Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 324 of 425
Found at i:100839521 original size:25 final size:26
Alignment explanation
Indices: 100839488--100839544 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
100839478 TTGTTGTTAG
*
100839488 TTATTATTATTGTTAGT-AAAAACCA
1 TTATTATTATTATTAGTAAAAAACCA
*
100839513 TTATTATTATTATTAGTAAAAAACTA
1 TTATTATTATTATTAGTAAAAAACCA
100839539 TTATTA
1 TTATTA
100839545 GGATTGTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 16 0.55
26 13 0.45
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (26 bp):
TTATTATTATTATTAGTAAAAAACCA
Found at i:100839598 original size:39 final size:37
Alignment explanation
Indices: 100839513--100839604 Score: 98
Period size: 39 Copynumber: 2.4 Consensus size: 37
100839503 GTAAAAACCA
*
100839513 TTATTATTATTATTAGTAAAAAACTATTATTAGGATTG
1 TTATTATTATTGTTAGTAAAAAACTATTATTA-GATTG
*
100839551 TTGGTTATTATTGTTAGTAAAAAACCCTAATTATT-G-TTAG
1 TT-ATTATTATTGTTAGTAAAAAA--CT-ATTATTAGATT-G
100839591 TTATTATTATTGTT
1 TTATTATTATTGTT
100839605 GATTTATATT
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
38 2 0.04
39 32 0.70
40 4 0.09
41 2 0.04
42 6 0.13
ACGTcount: A:0.34, C:0.04, G:0.12, T:0.50
Consensus pattern (37 bp):
TTATTATTATTGTTAGTAAAAAACTATTATTAGATTG
Found at i:100844342 original size:17 final size:17
Alignment explanation
Indices: 100844320--100844358 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
100844310 CGGTAATAGT
*
100844320 ATGTTCCAATTTA-ATTA
1 ATGTTCC-AGTTAGATTA
100844337 ATGTTCCAGTTAGATTA
1 ATGTTCCAGTTAGATTA
100844354 ATGTT
1 ATGTT
100844359 GTAATGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (17 bp):
ATGTTCCAGTTAGATTA
Found at i:100847105 original size:139 final size:138
Alignment explanation
Indices: 100846941--100847268 Score: 559
Period size: 138 Copynumber: 2.4 Consensus size: 138
100846931 TATTTCTAAA
* * *
100846941 ATTTTTAAAATATTCAGATTCTATTTTTTAAAATATACTATTTTTGTATTTTATTTTTTTATCTT
1 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTGTATTTTA-TTTTTTATCTT
*
100847006 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTATCCC
65 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTATCAC
100847071 TTTGTTTGT
130 TTTGTTTGT
*
100847080 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATCTTA
1 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTGTATTTTATTTTTTATCTTA
*
100847145 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTGTCACT
66 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTATCACT
100847210 TTGTTTGT
131 TTGTTTGT
* * *
100847218 ATTTCTAAAATTTTCGAATTTTATTTTTTAAAATATACT-TTTTTTTATTTT
1 ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTGTATTTT
100847269 TATATTATTT
Statistics
Matches: 179, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
137 10 0.06
138 120 0.67
139 49 0.27
ACGTcount: A:0.27, C:0.08, G:0.07, T:0.57
Consensus pattern (138 bp):
ATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTTGTATTTTATTTTTTATCTTA
TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTAAATAACCCTGATTTTATCACT
TTGTTTGT
Found at i:100847300 original size:36 final size:36
Alignment explanation
Indices: 100847260--100847368 Score: 96
Period size: 36 Copynumber: 2.9 Consensus size: 36
100847250 ATATACTTTT
100847260 TTTTATTTTTATATTATTTTTTATACTATTTTCGTA
1 TTTTATTTTTATATTATTTTTTATACTATTTTCGTA
* * * *
100847296 TTTTATTGTTT-TTTTCATATTTTAT-TTCTTTTCGTA
1 TTTTATT-TTTATATT-ATTTTTTATACTATTTTCGTA
*
100847332 TTTTATTTTTTCATATTTTCTTTTTCTATACTATTTT
1 TTTTA-TTTTT-ATA--TTATTTTT-TATACTATTTT
100847369 TCTAAAATAG
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
36 27 0.49
37 13 0.24
38 1 0.02
39 4 0.07
40 5 0.09
41 5 0.09
ACGTcount: A:0.17, C:0.08, G:0.03, T:0.72
Consensus pattern (36 bp):
TTTTATTTTTATATTATTTTTTATACTATTTTCGTA
Found at i:100847310 original size:19 final size:18
Alignment explanation
Indices: 100847288--100847342 Score: 76
Period size: 17 Copynumber: 3.1 Consensus size: 18
100847278 TTTTATACTA
100847288 TTTTCGTATTTTATTGTTT
1 TTTTCGTATTTTATT-TTT
* *
100847307 TTTTCATATTTTA-TTTC
1 TTTTCGTATTTTATTTTT
100847324 TTTTCGTATTTTATTTTT
1 TTTTCGTATTTTATTTTT
100847342 T
1 T
100847343 CATATTTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 14 0.45
18 5 0.16
19 12 0.39
ACGTcount: A:0.13, C:0.07, G:0.05, T:0.75
Consensus pattern (18 bp):
TTTTCGTATTTTATTTTT
Found at i:100847327 original size:17 final size:16
Alignment explanation
Indices: 100847304--100847356 Score: 72
Period size: 17 Copynumber: 3.3 Consensus size: 16
100847294 TATTTTATTG
100847304 TTTTTTTCATATTTTA
1 TTTTTTTCATATTTTA
*
100847320 TTTCTTTTCGTATTTTA
1 TTT-TTTTCATATTTTA
*
100847337 -TTTTTTCATATTTTC
1 TTTTTTTCATATTTTA
100847352 TTTTT
1 TTTTT
100847357 CTATACTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 11 0.34
16 9 0.28
17 12 0.38
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTTTTTCATATTTTA
Found at i:100847348 original size:15 final size:15
Alignment explanation
Indices: 100847305--100847356 Score: 68
Period size: 15 Copynumber: 3.3 Consensus size: 15
100847295 ATTTTATTGT
100847305 TTTTTTCATATTTTA
1 TTTTTTCATATTTTA
*
100847320 TTTCTTTTCGTATTTTA
1 -TT-TTTTCATATTTTA
*
100847337 TTTTTTCATATTTTC
1 TTTTTTCATATTTTA
100847352 TTTTT
1 TTTTT
100847357 CTATACTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 16 0.50
16 4 0.12
17 12 0.38
ACGTcount: A:0.13, C:0.10, G:0.02, T:0.75
Consensus pattern (15 bp):
TTTTTTCATATTTTA
Found at i:100847696 original size:11 final size:11
Alignment explanation
Indices: 100847664--100847697 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
100847654 ATAAATTTAT
*
100847664 AAATTAAATCT
1 AAATTAAATCA
100847675 AAATTAAATCA
1 AAATTAAATCA
*
100847686 AAATCAAATCA
1 AAATTAAATCA
100847697 A
1 A
100847698 GAATAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.26
Consensus pattern (11 bp):
AAATTAAATCA
Found at i:100847799 original size:14 final size:13
Alignment explanation
Indices: 100847777--100847812 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
100847767 CTTCCCTCCG
100847777 TTTTCTTCTCTTTC
1 TTTT-TTCTCTTTC
100847791 TCTTTTTCTCTTTC
1 T-TTTTTCTCTTTC
100847805 TTTTTTCT
1 TTTTTTCT
100847813 TCCCTTCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.33
14 11 0.52
15 3 0.14
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTTTCTCTTTC
Found at i:100847865 original size:14 final size:15
Alignment explanation
Indices: 100847836--100847874 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
100847826 CGTCTGCTTG
100847836 CTCC-TTCTTCTTCT
1 CTCCTTTCTTCTTCT
*
100847850 CTTCTTTCTT-TTCT
1 CTCCTTTCTTCTTCT
100847864 CTCCTTTCTTC
1 CTCCTTTCTTC
100847875 CCCAAATGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (15 bp):
CTCCTTTCTTCTTCT
Found at i:100848045 original size:16 final size:16
Alignment explanation
Indices: 100848019--100848058 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
100848009 CAATCTACTT
*
100848019 CAGCTTTTTTTTTTCAG
1 CAGC-TTTTTTTTTAAG
100848036 CAGCTTTTTTTTTAAG
1 CAGCTTTTTTTTTAAG
*
100848052 CATCTTT
1 CAGCTTT
100848059 CTACTATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.15, C:0.17, G:0.10, T:0.57
Consensus pattern (16 bp):
CAGCTTTTTTTTTAAG
Found at i:100848084 original size:23 final size:23
Alignment explanation
Indices: 100848054--100848100 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
100848044 TTTTTAAGCA
100848054 TCTTTCTACTATTTCTTTTTTTT
1 TCTTTCTACTATTTCTTTTTTTT
*
100848077 TCTTTCTACTGTTTCTTTTTTTT
1 TCTTTCTACTATTTCTTTTTTTT
100848100 T
1 T
100848101 TTACTGTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.74
Consensus pattern (23 bp):
TCTTTCTACTATTTCTTTTTTTT
Found at i:100848095 original size:19 final size:19
Alignment explanation
Indices: 100848073--100848110 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
100848063 TATTTCTTTT
100848073 TTTTTCTTTCTACTGTTTC
1 TTTTTCTTTCTACTGTTTC
* *
100848092 TTTTTTTTTTTACTGTTTC
1 TTTTTCTTTCTACTGTTTC
100848111 ATGTCAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTTTCTTTCTACTGTTTC
Found at i:100848285 original size:3 final size:3
Alignment explanation
Indices: 100848277--100848321 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
100848267 CAAAACAGTA
100848277 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
100848322 GATTTAAAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:100849906 original size:15 final size:13
Alignment explanation
Indices: 100849877--100849902 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
100849867 GTAATAATAA
100849877 AATATATTATATT
1 AATATATTATATT
100849890 AATATATTATATT
1 AATATATTATATT
100849903 TTAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AATATATTATATT
Found at i:100851275 original size:32 final size:32
Alignment explanation
Indices: 100851234--100851296 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
100851224 TGATAAAATT
100851234 GAAAATATGAAATTTATAATGTGTTTGGTTTA
1 GAAAATATGAAATTTATAATGTGTTTGGTTTA
*
100851266 GAAACTATGAAATTTATAATGTGTTTGGTTT
1 GAAAATATGAAATTTATAATGTGTTTGGTTT
100851297 TACTTTTTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (32 bp):
GAAAATATGAAATTTATAATGTGTTTGGTTTA
Found at i:100852862 original size:15 final size:15
Alignment explanation
Indices: 100852842--100852902 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 15
100852832 CAAGTTTAAC
100852842 ATGAATTAAACCTAA
1 ATGAATTAAACCTAA
**
100852857 ATGAATTTTACAAGTTTAA
1 ATGAA--TTA-AA-CCTAA
100852876 CATGAATTAAACCTAA
1 -ATGAATTAAACCTAA
*
100852892 ATGAATGAAAC
1 ATGAATTAAAC
100852903 AATCATTTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
15 15 0.42
16 3 0.08
17 5 0.14
18 5 0.14
19 3 0.08
20 5 0.14
ACGTcount: A:0.49, C:0.11, G:0.10, T:0.30
Consensus pattern (15 bp):
ATGAATTAAACCTAA
Found at i:100852867 original size:35 final size:35
Alignment explanation
Indices: 100852828--100852897 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
100852818 TGGCCTTAGA
100852828 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
1 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
100852863 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
1 TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
100852898 GAAACAATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (35 bp):
TTTACAAGTTTAACATGAATTAAACCTAAATGAAT
Found at i:100852882 original size:20 final size:20
Alignment explanation
Indices: 100852828--100852883 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
100852818 TGGCCTTAGA
100852828 TTTACAAGTTTAACATGAA-
1 TTTACAAGTTTAACATGAAT
**
100852847 -TTA-AA-CCTAA-ATGAAT
1 TTTACAAGTTTAACATGAAT
100852863 TTTACAAGTTTAACATGAAT
1 TTTACAAGTTTAACATGAAT
100852883 T
1 T
100852884 AAACCTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 9
0.68 0.10 0.22
Matches are distributed among these distances:
15 5 0.18
16 3 0.11
17 5 0.18
18 5 0.18
19 3 0.11
20 7 0.25
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.38
Consensus pattern (20 bp):
TTTACAAGTTTAACATGAAT
Found at i:100854568 original size:21 final size:21
Alignment explanation
Indices: 100854523--100854572 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
100854513 TGCAGGACTC
*
100854523 ACACGCCTGTGTGGTCTAAGGG
1 ACACGCCTGTGTGGCCT-AGGG
100854545 ACACGCCTGTGTGAGCCT-GGG
1 ACACGCCTGTGTG-GCCTAGGG
100854566 ACACGCC
1 ACACGCC
100854573 GTACTGTAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 10 0.38
22 13 0.50
23 3 0.12
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.18
Consensus pattern (21 bp):
ACACGCCTGTGTGGCCTAGGG
Found at i:100857322 original size:45 final size:44
Alignment explanation
Indices: 100857237--100857322 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 44
100857227 TATGTAATCT
*
100857237 GAACTCATTGAGTTGTGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCC
* *
100857281 GAACTCATTGAGTTGTGGTCTGAGTTCGTGATATGTATGACA
1 GAACTCATTGAGTTGT-GTCTGAGTTCATGATATATATGACA
100857323 CATGTTTTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 16 0.42
45 22 0.58
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (44 bp):
GAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCC
Found at i:100860652 original size:20 final size:19
Alignment explanation
Indices: 100860616--100860657 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
100860606 AATATATGTA
100860616 TTATATTTTATATTATTTAC
1 TTATATTTTATATTA-TTAC
100860636 TTATATTTTAT-TATATTAC
1 TTATATTTTATAT-TATTAC
100860655 TTA
1 TTA
100860658 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATATTTTATATTATTAC
Found at i:100860672 original size:23 final size:18
Alignment explanation
Indices: 100860616--100860657 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
100860606 AATATATGTA
100860616 TTATATTTTATATTATTTAC
1 TTATA-TTT-TATTATTTAC
100860636 TTATATTTTATTATATTAC
1 TTATATTTTATTAT-TTAC
100860655 TTA
1 TTA
100860658 ATATCTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATTTTATTATTTAC
Found at i:100860800 original size:28 final size:28
Alignment explanation
Indices: 100860763--100860816 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
100860753 GTATTAACCA
* *
100860763 TATATTTTTTCATATTATTATTATTTAT
1 TATATATTTTCAAATTATTATTATTTAT
*
100860791 TATATATTTTTAAATTATTATTATTT
1 TATATATTTTCAAATTATTATTATTT
100860817 TACATTATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (28 bp):
TATATATTTTCAAATTATTATTATTTAT
Found at i:100860830 original size:28 final size:28
Alignment explanation
Indices: 100860735--100860888 Score: 79
Period size: 28 Copynumber: 5.4 Consensus size: 28
100860725 CATAATGTTT
* * * * *
100860735 ATATATCTTTAAACTATT-GTATTAACC
1 ATATATTTTTAAATTATTATTATTTATC
* *
100860762 ATATATTTTTTCATATTATTATTATTTATT
1 ATATA-TTTTT-AAATTATTATTATTTATC
100860792 ATATATTTTTAAATTATTATTATTT-TAC
1 ATATATTTTTAAATTATTATTATTTAT-C
* *
100860820 AT-TATTATTTATATTATT-TTACTTGTATT
1 ATATATT-TTTAAATTATTATTA-TT-TATC
*
100860849 ATATCTTTATT-AATTATT-TATATATTATAC
1 ATATATTT-TTAAATTATTAT-TAT-TTAT-C
100860879 AT-TATTTTTA
1 ATATATTTTTA
100860889 CATATATACT
Statistics
Matches: 98, Mismatches: 15, Indels: 26
0.71 0.11 0.19
Matches are distributed among these distances:
27 13 0.13
28 34 0.35
29 30 0.31
30 21 0.21
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (28 bp):
ATATATTTTTAAATTATTATTATTTATC
Found at i:100860858 original size:22 final size:22
Alignment explanation
Indices: 100860762--100860876 Score: 66
Period size: 22 Copynumber: 5.4 Consensus size: 22
100860752 TGTATTAACC
*
100860762 ATATATT-TTTTCATATTATTAT
1 ATATATTATTTT-ACATTATTAT
* * * *
100860784 -TAT-TTATTATATATTTTTAA
1 ATATATTATTTTACATTATTAT
100860804 ATTATTATTATTTTACATTATTAT
1 A-TA-TATTATTTTACATTATTAT
* *
100860828 TTATATTATTTTACTTGTATTAT
1 ATATATTATTTTACAT-TATTAT
*
100860851 ATCT-TTA--TTA-ATTATT-T
1 ATATATTATTTTACATTATTAT
100860868 ATATATTAT
1 ATATATTAT
100860877 ACATTATTTT
Statistics
Matches: 72, Mismatches: 13, Indels: 19
0.69 0.12 0.18
Matches are distributed among these distances:
17 4 0.06
18 7 0.10
19 1 0.01
20 13 0.18
21 6 0.08
22 17 0.24
23 11 0.15
24 13 0.18
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (22 bp):
ATATATTATTTTACATTATTAT
Found at i:100860954 original size:22 final size:22
Alignment explanation
Indices: 100860929--100860973 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
100860919 TATTTTATAT
100860929 TATGTCATTT-TTTATACTATTA
1 TATGTCATTTATTTATAC-ATTA
**
100860951 TATGTTTTTTATTTATACATTA
1 TATGTCATTTATTTATACATTA
100860973 T
1 T
100860974 TATCATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.62
Consensus pattern (22 bp):
TATGTCATTTATTTATACATTA
Found at i:100864378 original size:80 final size:80
Alignment explanation
Indices: 100864245--100864394 Score: 232
Period size: 80 Copynumber: 1.9 Consensus size: 80
100864235 GATGATAACC
* * * *
100864245 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTCGAG
100864310 TGAGTTACTAATTCT
66 TGAGTTACTAATTCT
100864325 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCATTCG
1 GGGCTAAGTCCCGAAGGCATTTGTGC-AACTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTCG
100864388 AGTGAGT
64 AGTGAGT
100864395 GGCTATATCC
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
79 2 0.03
80 60 0.94
81 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCCGAAGGCATTCGAG
TGAGTTACTAATTCT
Found at i:100864406 original size:40 final size:40
Alignment explanation
Indices: 100864243--100864395 Score: 204
Period size: 40 Copynumber: 3.8 Consensus size: 40
100864233 CGGATGATAA
100864243 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTGACTAATT
*
100864283 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTGACTAATT
* * *
100864323 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTG-AGTGACTAAT-T
* *
100864363 CCGGGCTAAGTCCCGAAGGCATTCGAGTGAGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTG
100864396 GCTATATCCG
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 5 0.05
40 93 0.93
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTGACTAATT
Found at i:100873090 original size:47 final size:47
Alignment explanation
Indices: 100873036--100873208 Score: 265
Period size: 47 Copynumber: 3.7 Consensus size: 47
100873026 ATGATGAAAT
100873036 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* * *
100873083 TGATGAATGTGAATGTGTATATATGTGATAAGGCTGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* * * *
100873130 TGATGGATGTGAAGGTGTATATATGTGATAAGGCCAAATGACCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
100873177 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
100873209 TCCCGAAGGG
Statistics
Matches: 115, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 115 1.00
ACGTcount: A:0.34, C:0.06, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:100873096 original size:22 final size:22
Alignment explanation
Indices: 100873071--100873142 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
100873061 TGATAAGGCC
100873071 GAATGGCCAATGTGATGAATGT
1 GAATGGCCAATGTGATGAATGT
** *
100873093 GAATGTGTATATATGTGAT-AAGGCT
1 GAATG-G-CCA-ATGTGATGAATG-T
* *
100873118 GAATGGCCGATGTGATGGATGT
1 GAATGGCCAATGTGATGAATGT
100873140 GAA
1 GAA
100873143 GGTGTATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
22 16 0.43
23 3 0.08
24 5 0.14
25 13 0.35
ACGTcount: A:0.31, C:0.07, G:0.33, T:0.29
Consensus pattern (22 bp):
GAATGGCCAATGTGATGAATGT
Found at i:100873109 original size:25 final size:25
Alignment explanation
Indices: 100873036--100873158 Score: 73
Period size: 25 Copynumber: 5.2 Consensus size: 25
100873026 ATGATGAAAT
*
100873036 TGATGAATGTGAAAGTGTATATATG
1 TGATGAATGTGAATGTGTATATATG
* * **
100873061 TGAT-AAGGCCGAATG-G-CCA-ATG
1 TGATGAATG-TGAATGTGTATATATG
100873083 TGATGAATGTGAATGTGTATATATG
1 TGATGAATGTGAATGTGTATATATG
* ***
100873108 TGAT-AAGGCTGAATG-G--CCGATG
1 TGATGAATG-TGAATGTGTATATATG
* *
100873130 TGATGGATGTGAAGGTGTATATATG
1 TGATGAATGTGAATGTGTATATATG
100873155 TGAT
1 TGAT
100873159 AAGGCCAAAT
Statistics
Matches: 69, Mismatches: 19, Indels: 20
0.64 0.18 0.19
Matches are distributed among these distances:
22 24 0.35
23 8 0.12
24 9 0.13
25 28 0.41
ACGTcount: A:0.31, C:0.06, G:0.32, T:0.32
Consensus pattern (25 bp):
TGATGAATGTGAATGTGTATATATG
Found at i:100874444 original size:27 final size:27
Alignment explanation
Indices: 100874406--100874581 Score: 226
Period size: 27 Copynumber: 6.5 Consensus size: 27
100874396 CAACTTTAGT
* *
100874406 TTACCAAAATACCACTAGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * * *
100874433 TTACTAGAATACCCTTGGTTTATAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
*
100874460 TCACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
100874487 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* *
100874514 TTATCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * *
100874541 TTACCAAAATATCCCTGATTTGTGAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
**
100874568 TTACTGAAATACCC
1 TTACCAAAATACCC
100874582 TCGACCTGTA
Statistics
Matches: 127, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TTACCAAAATACCCCTGGTTTGTAAAA
Found at i:100874563 original size:54 final size:53
Alignment explanation
Indices: 100874406--100874691 Score: 250
Period size: 54 Copynumber: 5.3 Consensus size: 53
100874396 CAACTTTAGT
* * * * *
100874406 TTACCAAAATACCACTAGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-TGATTTGTAAAA
* * *
100874460 TCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCCTGATTTGTAAAA
* *
100874514 TTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATATCCCTGATTTGTGAAA
1 TTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCCTGATTTGTAAAA
** * ** *** *
100874568 TTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATACCCTCGAATTGTAAAA
1 TTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCT-GATTTGTAAAA
* * * * **** **
100874622 TTACCAAAGTACCCCTAATTTATAGAATTACCGTTTTACCCTCGATTTACAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCT-GATTTGTAAAA
100874676 TTACCAAAATACCCCT
1 TTACCAAAATACCCCT
100874692 GTAGGGTAGA
Statistics
Matches: 187, Mismatches: 41, Indels: 8
0.79 0.17 0.03
Matches are distributed among these distances:
53 9 0.05
54 171 0.91
55 7 0.04
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (53 bp):
TTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTGATTTGTAAAA
Found at i:100874634 original size:27 final size:27
Alignment explanation
Indices: 100874406--100874689 Score: 202
Period size: 27 Copynumber: 10.5 Consensus size: 27
100874396 CAACTTTAGT
*
100874406 TTACCAAAATACCACTAG-TTTGTAAAA
1 TTACCAAAATACC-CTCGATTTGTAAAA
* * * * *
100874433 TTACTAGAATACCCTTGGTTTATAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
* *
100874460 TCACCAAAATACCC-CTGGTTTGTAAAA
1 TTACCAAAATACCCTC-GATTTGTAAAA
*
100874487 TTACCAAAATACCC-CTGGTTTGTAAAA
1 TTACCAAAATACCCTC-GATTTGTAAAA
* *
100874514 TTATCAAAATACCC-CTAGTTTGTAAAA
1 TTACCAAAATACCCTCGA-TTTGTAAAA
*
100874541 TTACCAAAATATCCCT-GATTTGTGAAA
1 TTACCAAAATA-CCCTCGATTTGTAAAA
** **
100874568 TTACTGAAATACCCTCGACCTGTAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
*** *
100874595 TTATTGAAATACCCTCGAATTGTAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
* * * *
100874622 TTACCAAAGTACCC-CTAATTTATAGAA
1 TTACCAAAATACCCTC-GATTTGTAAAA
**** **
100874649 TTACCGTTTTACCCTCGATTTACAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
100874676 TTACCAAAATACCC
1 TTACCAAAATACCC
100874690 CTGTAGGGTA
Statistics
Matches: 206, Mismatches: 43, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 8 0.04
27 193 0.94
28 5 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TTACCAAAATACCCTCGATTTGTAAAA
Found at i:100874704 original size:27 final size:27
Alignment explanation
Indices: 100874674--100874842 Score: 198
Period size: 27 Copynumber: 6.3 Consensus size: 27
100874664 CGATTTACAA
100874674 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
**
100874701 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
100874728 AATTACCGAAATACCCCTGTCGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
100874755 AATTA-CAGAAATACTCATGTAGGGTAG
1 AATTACCA-AAATACCCCTGTAGGGTAG
* * *
100874782 AATTACTAAAATACCCCTGTACGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * *
100874809 AATTACCGAGATA-CCTTGTAGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
100874835 AATTACCA
1 AATTACCA
100874843 TTTTGTCCCT
Statistics
Matches: 119, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
26 17 0.14
27 101 0.85
28 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:100874759 original size:81 final size:81
Alignment explanation
Indices: 100874672--100874842 Score: 220
Period size: 81 Copynumber: 2.1 Consensus size: 81
100874662 CTCGATTTAC
* ** *
100874672 AAAATTACCA-AAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCG
1 AAAATTACCAGAAATACCCATGTAGGGTAGAATTACCAAAATACCCCTGTACGGTAGAATTACCG
*
100874736 AAATACCCCTGTCGGGT
66 AAATA-CCCTGTAGGGT
* * * *
100874753 AGAATTA-CAGAAATACTCATGTAGGGTAGAATTACTAAAATACCCCTGTACGGTGGAATTACCG
1 AAAATTACCAGAAATACCCATGTAGGGTAGAATTACCAAAATACCCCTGTACGGTAGAATTACCG
* *
100874817 AGATACCTTGTAGGGT
66 AAATACCCTGTAGGGT
100874833 AAAATTACCA
1 AAAATTACCA
100874843 TTTTGTCCCT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 17 0.22
81 59 0.78
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (81 bp):
AAAATTACCAGAAATACCCATGTAGGGTAGAATTACCAAAATACCCCTGTACGGTAGAATTACCG
AAATACCCTGTAGGGT
Found at i:100876776 original size:27 final size:27
Alignment explanation
Indices: 100876738--100876913 Score: 217
Period size: 27 Copynumber: 6.5 Consensus size: 27
100876728 ATACTTTAGT
* *
100876738 TTACCAAAATACCACTAGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * * *
100876765 TTACTAGAATACCCTTGGTTTATAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
*
100876792 TCACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
*
100876819 TTACCAAAATACCCCGGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* *
100876846 TTATCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* * *
100876873 TTACCAAAATATCCCTGATTTGTGAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
**
100876900 TTACTGAAATACCC
1 TTACCAAAATACCC
100876914 TCGACCTATA
Statistics
Matches: 125, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TTACCAAAATACCCCTGGTTTGTAAAA
Found at i:100876926 original size:81 final size:81
Alignment explanation
Indices: 100876772--100876974 Score: 203
Period size: 81 Copynumber: 2.5 Consensus size: 81
100876762 AAATTACTAG
* * * * * *
100876772 AATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCGGG
1 AATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGGA
** *
100876837 TTTGTAAAATTATCAA
66 CCTATAAAATTATCAA
* * **
100876853 AATACCCCTAGTTTGTAAAATTACCAAAATATCCCTGATTTGTGAAATTACTGAAATACCCTC-G
1 AATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGG
**
100876917 ACCTATAAAATTATTGA
65 ACCTATAAAATTATCAA
* * * *
100876934 AATA-CCCTCGAATTGTAAAATTACCAAAGTACCCCTAATTT
1 AATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTGATTT
100876975 ACAGAATTAC
Statistics
Matches: 100, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
80 5 0.05
81 94 0.94
82 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
AATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGGA
CCTATAAAATTATCAA
Found at i:100876952 original size:27 final size:27
Alignment explanation
Indices: 100876738--100876967 Score: 182
Period size: 27 Copynumber: 8.5 Consensus size: 27
100876728 ATACTTTAGT
*
100876738 TTACCAAAATACCACTAG-TTTGTAAAA
1 TTACCAAAATACC-CTCGATTTGTAAAA
* * * * *
100876765 TTACTAGAATACCCTTGGTTTATAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
* *
100876792 TCACCAAAATACCC-CTGGTTTGTAAAA
1 TTACCAAAATACCCTC-GATTTGTAAAA
*
100876819 TTACCAAAATACCC-CGGGTTTGTAAAA
1 TTACCAAAATACCCTC-GATTTGTAAAA
* *
100876846 TTATCAAAATACCC-CTAGTTTGTAAAA
1 TTACCAAAATACCCTCGA-TTTGTAAAA
*
100876873 TTACCAAAATATCCCT-GATTTGTGAAA
1 TTACCAAAATA-CCCTCGATTTGTAAAA
** ** *
100876900 TTACTGAAATACCCTCGACCTATAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
*** *
100876927 TTATTGAAATACCCTCGAATTGTAAAA
1 TTACCAAAATACCCTCGATTTGTAAAA
*
100876954 TTACCAAAGTACCC
1 TTACCAAAATACCC
100876968 CTAATTTACA
Statistics
Matches: 166, Mismatches: 31, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
26 7 0.04
27 155 0.93
28 4 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
TTACCAAAATACCCTCGATTTGTAAAA
Found at i:100877020 original size:27 final size:27
Alignment explanation
Indices: 100876738--100877022 Score: 136
Period size: 27 Copynumber: 10.6 Consensus size: 27
100876728 ATACTTTAGT
* * *
100876738 TTACCAAAATACCACTAG-TTTGTAAAA
1 TTACCGAAATACC-CTCGATTTATAAAA
* * *
100876765 TTA-CTAGAATACCCTTGGTTTATAAAA
1 TTACCGA-AATACCCTCGATTTATAAAA
* * * *
100876792 TCACCAAAATACCC-CTGGTTTGTAAAA
1 TTACCGAAATACCCTC-GATTTATAAAA
* * *
100876819 TTACCAAAATACCC-CGGGTTTGTAAAA
1 TTACCGAAATACCCTC-GATTTATAAAA
* * * *
100876846 TTATCAAAATACCC-CTAGTTTGTAAAA
1 TTACCGAAATACCCTCGA-TTTATAAAA
* * *
100876873 TTACCAAAATATCCCT-GATTTGTGAAA
1 TTACCGAAATA-CCCTCGATTTATAAAA
* **
100876900 TTACTGAAATACCCTCGACCTATAAAA
1 TTACCGAAATACCCTCGATTTATAAAA
** * *
100876927 TTATTGAAATACCCTCGAATTGTAAAA
1 TTACCGAAATACCCTCGATTTATAAAA
* * *
100876954 TTACC-AAAGTACCC-CTAATTTACAGAA
1 TTACCGAAA-TACCCTC-GATTTATAAAA
*** *
100876981 TTACCGTTTTACCCTCGATTTACAAAA
1 TTACCGAAATACCCTCGATTTATAAAA
100877008 TTACCGAAATACCCT
1 TTACCGAAATACCCT
100877023 TGTAGGGTAG
Statistics
Matches: 206, Mismatches: 40, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
26 13 0.06
27 186 0.90
28 7 0.03
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
TTACCGAAATACCCTCGATTTATAAAA
Found at i:100877036 original size:27 final size:27
Alignment explanation
Indices: 100877006--100877254 Score: 347
Period size: 27 Copynumber: 9.3 Consensus size: 27
100876996 CGATTTACAA
*
100877006 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
100877033 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
100877060 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
100877087 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
100877114 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
100877141 AATTACCGAAATACCCCTGTCGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
100877168 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** * *
100877195 AATTTCTAAAATACCCCTGTACGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
100877222 AATTACTGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
100877248 AATTACC
1 AATTACC
100877255 ATTTTGTCCC
Statistics
Matches: 201, Mismatches: 21, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
26 14 0.07
27 187 0.93
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:100890388 original size:22 final size:22
Alignment explanation
Indices: 100890350--100890400 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 22
100890340 TACTTTAGCC
100890350 TTTTTTTTATTGCAATT-TAAT
1 TTTTTTTTATTGCAATTATAAT
**
100890371 TTTTTTTTATTTTTAATTACTAAT
1 TTTTTTTTA-TTGCAATTA-TAAT
100890395 TTTTTT
1 TTTTTT
100890401 ATTTGCTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 9 0.36
22 6 0.24
24 10 0.40
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (22 bp):
TTTTTTTTATTGCAATTATAAT
Found at i:100894308 original size:3 final size:3
Alignment explanation
Indices: 100894300--100894385 Score: 172
Period size: 3 Copynumber: 28.7 Consensus size: 3
100894290 TTGTCCTCAT
100894300 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
100894348 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
100894386 TCTGAATTTA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 83 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:100905231 original size:12 final size:13
Alignment explanation
Indices: 100905211--100905243 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
100905201 AATCGTAGAC
100905211 CATAAAAATATAA
1 CATAAAAATATAA
100905224 CA-AAAAATATAA
1 CATAAAAATATAA
100905236 CATAAAAA
1 CATAAAAA
100905244 ATCAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (13 bp):
CATAAAAATATAA
Found at i:100912311 original size:2 final size:2
Alignment explanation
Indices: 100912304--100912341 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
100912294 TCAAATATTC
100912304 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100912342 GAATATACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:100914522 original size:24 final size:24
Alignment explanation
Indices: 100914494--100914541 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
100914484 TTGCATGAAT
*
100914494 CGCTTCGCTCTTTCTTTGATAATG
1 CGCTTCGCTCTTTCTTCGATAATG
*
100914518 CGCTTCGCTGTTTCTTCGATAATG
1 CGCTTCGCTCTTTCTTCGATAATG
100914542 GAGTCTATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (24 bp):
CGCTTCGCTCTTTCTTCGATAATG
Found at i:100923915 original size:33 final size:31
Alignment explanation
Indices: 100923837--100923919 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
100923827 CTTCCTGCAT
* * *
100923837 TAAAATCCAACCAAATACAACAAATATAGCA
1 TAAAATACAACCAAAAACAACAAATATAACA
* * * *
100923868 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATACAACCAAAAACAACAAATATAACA
100923899 TAAAAAATACAACCAAAAACA
1 T--AAAATACAACCAAAAACA
100923920 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.60, C:0.20, G:0.05, T:0.14
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAACAAATATAACA
Found at i:100924179 original size:21 final size:21
Alignment explanation
Indices: 100924151--100924221 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
100924141 TTTGTTGCCA
*
100924151 TCGCTGCTACCTCTGCCTCCC
1 TCGCTGCTACCACTGCCTCCC
*
100924172 TTGCTGCTACCACTGCCTCCC
1 TCGCTGCTACCACTGCCTCCC
* *
100924193 TCGCTGCTGCAACTGCCTCCC
1 TCGCTGCTACCACTGCCTCCC
*
100924214 TCTCTGCT
1 TCGCTGCT
100924222 GCCTCCGCTC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.07, C:0.48, G:0.15, T:0.30
Consensus pattern (21 bp):
TCGCTGCTACCACTGCCTCCC
Found at i:100928734 original size:40 final size:40
Alignment explanation
Indices: 100928678--100928775 Score: 99
Period size: 40 Copynumber: 2.5 Consensus size: 40
100928668 GGGTATAGCG
* * * *
100928678 ACTCGCTCAAAAGCCTTCAGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCAGGACATAACCCGGATT-TAAGA
* * * **
100928718 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCAGGACATAACCCGGATTTAAGA
100928758 ACTCGCACAAATGCCTTC
1 ACTCGCACAAATGCCTTC
100928776 GGATCTTAGT
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
40 45 0.96
41 2 0.04
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCAGGACATAACCCGGATTTAAGA
Found at i:100928824 original size:40 final size:40
Alignment explanation
Indices: 100928722--100928827 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 40
100928712 ATAATAGCTC
* * *
100928722 GCACAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTA
* **
100928762 GCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTA
1 GCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGAAC-TA
100928803 GCACAAA-GCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGACTTAGCCC
100928828 AGACATCATT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 3 0.05
40 42 0.75
41 11 0.20
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTA
Found at i:100933351 original size:49 final size:49
Alignment explanation
Indices: 100933130--100933736 Score: 972
Period size: 47 Copynumber: 12.7 Consensus size: 49
100933120 CCCTTCGGGA
* * * * *
100933130 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
100933177 CCTATCACATATATAT--ACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100933224 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATCAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100933271 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100933318 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100933367 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100933414 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100933463 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
100933512 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100933559 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
100933606 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100933655 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100933704 CTTATCTCATATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
100933737 GCATAAAATC
Statistics
Matches: 532, Mismatches: 18, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
45 6 0.01
47 264 0.50
48 1 0.00
49 261 0.49
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:100933360 original size:96 final size:96
Alignment explanation
Indices: 100933130--100933736 Score: 992
Period size: 96 Copynumber: 6.3 Consensus size: 96
100933120 CCCTTCGGGA
* * * * * * *
100933130 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
100933193 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
100933224 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATCAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
100933287 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
100933318 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
100933383 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
100933414 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
100933479 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
100933512 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
100933575 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
100933606 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--
*
100933671 ACACTTTCACATTCATCACATCGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
100933704 CTTATCTCATATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
100933737 GCATAAAATC
Statistics
Matches: 483, Mismatches: 20, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
93 1 0.00
94 134 0.28
96 240 0.50
98 108 0.22
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:100936990 original size:9 final size:9
Alignment explanation
Indices: 100936976--100937386 Score: 397
Period size: 9 Copynumber: 46.4 Consensus size: 9
100936966 TATTTAAGTA
*
100936976 TTATGTAAG
1 TTATATAAG
*
100936985 TTATGTAAG
1 TTATATAAG
*
100936994 TTATGTAAG
1 TTATATAAG
* *
100937003 TTAGGATATG
1 TTA-TATAAG
* *
100937013 ATATAT-AT
1 TTATATAAG
*
100937021 TTATGTAAG
1 TTATATAAG
*
100937030 TTATAT-AT
1 TTATATAAG
*
100937038 TTATCTAAG
1 TTATATAAG
*
100937047 TTGTATAAG
1 TTATATAAG
*
100937056 TTATGTAAG
1 TTATATAAG
*
100937065 TTATGTAAG
1 TTATATAAG
* *
100937074 TTGTAT-AT
1 TTATATAAG
*
100937082 TTATCTAAG
1 TTATATAAG
100937091 TTATATAAG
1 TTATATAAG
100937100 TTATATAAG
1 TTATATAAG
*
100937109 TTATGTAAG
1 TTATATAAG
*
100937118 TTCTATAAG
1 TTATATAAG
100937127 TTATATAAG
1 TTATATAAG
*
100937136 TTATAT-AT
1 TTATATAAG
*
100937144 TTATCTAAG
1 TTATATAAG
100937153 TTATATAAG
1 TTATATAAG
*
100937162 TTATGTAAG
1 TTATATAAG
*
100937171 TTATAT-AT
1 TTATATAAG
*
100937179 TTATCTAAG
1 TTATATAAG
100937188 TTATATAAG
1 TTATATAAG
100937197 TTATATAAG
1 TTATATAAG
*
100937206 TTATGTAAG
1 TTATATAAG
*
100937215 TTATATAAT
1 TTATATAAG
100937224 TTATATAAG
1 TTATATAAG
*
100937233 TTATAT-AT
1 TTATATAAG
*
100937241 TTATCTAAG
1 TTATATAAG
*
100937250 TTATATAGG
1 TTATATAAG
*
100937259 TTATAT-AT
1 TTATATAAG
*
100937267 TTATCTAAG
1 TTATATAAG
*
100937276 TTATATAAA
1 TTATATAAG
*
100937285 TTATGTAAG
1 TTATATAAG
*
100937294 TTATGTAAG
1 TTATATAAG
*
100937303 TTATAT-AT
1 TTATATAAG
*
100937311 TTATCTAAG
1 TTATATAAG
*
100937320 TAATATAAG
1 TTATATAAG
100937329 TTATATAAG
1 TTATATAAG
*
100937338 TTATGTAAG
1 TTATATAAG
100937347 TTATATAAG
1 TTATATAAG
100937356 TTATATAAG
1 TTATATAAG
*
100937365 TTATGTAAG
1 TTATATAAG
* *
100937374 TTTTGTAAG
1 TTATATAAG
100937383 TTAT
1 TTAT
100937387 GCTAAATATT
Statistics
Matches: 325, Mismatches: 68, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
8 44 0.14
9 276 0.85
10 5 0.02
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATATAAG
Found at i:100937070 original size:44 final size:44
Alignment explanation
Indices: 100936976--100937387 Score: 459
Period size: 44 Copynumber: 9.1 Consensus size: 44
100936966 TATTTAAGTA
* * * * * * *
100936976 TTATGTAAGTTATGTAAGTTATGTAAGTTAGGATATGATATAT-AT
1 TTATGTAAGTTATAT-ATTTATCTAAGTTA-TATAAGTTATATAAG
* *
100937021 TTATGTAAGTTATATATTTATCTAAGTTGTATAAGTTATGTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAG
*
100937065 TTATGTAAGTTGTATATTTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAG
* * *
100937109 TTATGTAAGTTCTATAAGTTATATAAGTTATATATTTATCTAAGTTATATAAG
1 TTATGTAAGTTATAT-ATTTATCTAAG---T-TA--TA--TAAGTTATATAAG
100937162 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAG
* * *
100937206 TTATGTAAGTTATATAATTTATATAAGTTATAT-ATTTATCTAAG
1 TTATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTTATATAAG
* * * *
100937250 TTATATAGGTTATATATTTATCTAAGTTATATAAATTATGTAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAG
*
100937294 TTATGTAAGTTATATATTTATCTAAGTAATATAAGTTATATAAG
1 TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAG
* * * * *
100937338 TTATGTAAGTTATATAAGTTATATAAGTTATGTAAGTTTTGTAAG
1 TTATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTTATATAAG
100937383 TTATG
1 TTATG
100937388 CTAAATATTT
Statistics
Matches: 317, Mismatches: 37, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
43 24 0.08
44 180 0.57
45 67 0.21
46 2 0.01
48 3 0.01
49 3 0.01
51 2 0.01
52 9 0.03
53 27 0.09
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (44 bp):
TTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAG
Found at i:100937156 original size:97 final size:97
Alignment explanation
Indices: 100937052--100937386 Score: 447
Period size: 97 Copynumber: 3.5 Consensus size: 97
100937042 CTAAGTTGTA
*
100937052 TAAGTTATGTAAGTTATGTAAGTTGTATATTTATCTAAGTTATATAAGTTATATAAGTTATGTAA
1 TAAGTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAGTTATGTAA
* *
100937117 GTTCTATAAGTTATATAAGTTATATATTTATC
66 GTTATATAATTTATATAAGTTATATATTTATC
*
100937149 TAAGTTATATAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAGTTATGTAA
1 TAAGTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAGTTATGTAA
100937214 GTTATATAATTTATATAAGTTATATATTTATC
66 GTTATATAATTTATATAAGTTATATATTTATC
* *
100937246 TAAGTTA--T-A--TA-G---GTTATATATTTATCTAAGTTATATAAATTATGTAAGTTATGTAA
1 TAAGTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAGTTATGTAA
* * * *
100937302 GTTATAT-ATTTATCTAAGTAATATAAGTTATA
66 GTTATATAATTTATATAAGTTATAT-ATTTATC
* * * * *
100937334 TAAGTTATGTAAGTTATATAAGTTATATAAGTTATGTAAGTTTTGTAAGTTAT
1 TAAGTTATGTAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATATAAGTTAT
100937387 GCTAAATATT
Statistics
Matches: 211, Mismatches: 16, Indels: 21
0.85 0.06 0.08
Matches are distributed among these distances:
87 15 0.07
88 61 0.29
90 1 0.00
91 2 0.01
92 2 0.01
93 2 0.01
94 1 0.00
95 1 0.00
97 107 0.51
98 19 0.09
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (97 bp):
TAAGTTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAGTTATGTAA
GTTATATAATTTATATAAGTTATATATTTATC
Found at i:100937519 original size:15 final size:15
Alignment explanation
Indices: 100937499--100937580 Score: 77
Period size: 15 Copynumber: 5.6 Consensus size: 15
100937489 TAAGTTGCGG
100937499 ATTAAATAATATTTA
1 ATTAAATAATATTTA
100937514 ATTAAATAATATTT-
1 ATTAAATAATATTTA
100937528 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
100937543 ATTAAATAATATTGA
1 ATTAAATAATATTTA
100937558 A--AAA-AATTACTTTA
1 ATTAAATAA-TA-TTTA
100937572 ATTAAATAA
1 ATTAAATAA
100937581 AATACATGTG
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
12 4 0.07
13 11 0.20
14 8 0.15
15 19 0.35
16 9 0.16
17 4 0.07
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:100937547 original size:29 final size:29
Alignment explanation
Indices: 100937510--100937580 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
100937500 TTAAATAATA
* * *
100937510 TTTAATTAAATAATATTTATAAAAATTAT
1 TTTAATTAAATAATATTGAAAAAAATTAC
100937539 TTTAATTAAATAATATTGAAAAAAATTAC
1 TTTAATTAAATAATATTGAAAAAAATTAC
100937568 TTTAATTAAATAA
1 TTTAATTAAATAA
100937581 AATACATGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (29 bp):
TTTAATTAAATAATATTGAAAAAAATTAC
Found at i:100937789 original size:24 final size:24
Alignment explanation
Indices: 100937757--100937827 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
100937747 TTAACTTAAA
100937757 TGATAAAACAGACGATAATATTTG
1 TGATAAAACAGACGATAATATTTG
*
100937781 TGATAAAACAGACAATAATATTTG
1 TGATAAAACAGACGATAATATTTG
* *
100937805 TGATAAAACGGACGAGAATATTT
1 TGATAAAACAGACGATAATATTT
100937828 CAATAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.28
Consensus pattern (24 bp):
TGATAAAACAGACGATAATATTTG
Found at i:100937944 original size:64 final size:64
Alignment explanation
Indices: 100937875--100938008 Score: 250
Period size: 64 Copynumber: 2.1 Consensus size: 64
100937865 ATATTTTATT
**
100937875 AAATATTTGTATATTAGATGGGACATATTATATTAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACATATTATAGCAATAAATAAATTTATTAAAAATCGTGATAG
100937939 AAATATTTGTATATTAGATGGGACATATTATAGCAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACATATTATAGCAATAAATAAATTTATTAAAAATCGTGATAG
100938003 AAATAT
1 AAATAT
100938009 AGATATATTA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.46, C:0.04, G:0.13, T:0.37
Consensus pattern (64 bp):
AAATATTTGTATATTAGATGGGACATATTATAGCAATAAATAAATTTATTAAAAATCGTGATAG
Found at i:100940876 original size:23 final size:24
Alignment explanation
Indices: 100940832--100940879 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
100940822 TCAATATAAG
*
100940832 AAAAATTGTAATCACAAGATTGTA
1 AAAAATTGTAATCACAACATTGTA
100940856 AAAAATTGTAA-CATC-ACATTGTA
1 AAAAATTGTAATCA-CAACATTGTA
100940879 A
1 A
100940880 TCACAAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.29
Consensus pattern (24 bp):
AAAAATTGTAATCACAACATTGTA
Found at i:100941891 original size:6 final size:6
Alignment explanation
Indices: 100941870--100941948 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
100941860 TAGCAGAACT
* * *
100941870 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
100941919 AGTATC AGGTAA-C AGAACC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
100941949 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
5 3 0.05
6 47 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.16
Consensus pattern (6 bp):
AGAATC
Found at i:100941915 original size:25 final size:25
Alignment explanation
Indices: 100941882--100941948 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
100941872 AATCAAAATG
*
100941882 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
100941907 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
100941932 AGAACCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
100941949 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.16
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:100942171 original size:27 final size:26
Alignment explanation
Indices: 100942066--100942173 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
100942056 AGCATGGCTG
* * * * *
100942066 CCAGAATAGATATTGTGACAGAGTCT
1 CCAGAACAGATATTGTGGCAAAGCCA
*
100942092 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAAAGCCA
* *
100942119 CTAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAAAGCCA
* *
100942146 CCAGAATCAGATAATGTTGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAAAGCCA
100942173 C
1 C
100942174 TTAACAAAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.17
27 51 0.74
28 6 0.09
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:100942379 original size:22 final size:22
Alignment explanation
Indices: 100942331--100942389 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
100942321 GTAAATACGT
*
100942331 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
100942353 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
100942375 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
100942390 CGATAATGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:100942459 original size:20 final size:20
Alignment explanation
Indices: 100942409--100942453 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
100942399 GTCTATAATT
*
100942409 GACACGAAGCCCACAATATC
1 GACACGAAGCCCACAATAAC
*
100942429 GATACGAAGCCCACAATAAC
1 GACACGAAGCCCACAATAAC
100942449 GACAC
1 GACAC
100942454 ACAGCCTTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.33, G:0.16, T:0.09
Consensus pattern (20 bp):
GACACGAAGCCCACAATAAC
Found at i:100942767 original size:27 final size:27
Alignment explanation
Indices: 100942737--100942868 Score: 122
Period size: 27 Copynumber: 4.9 Consensus size: 27
100942727 GGGGCAAAAT
*
100942737 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCCACAG-GGGTATCTC
* * *
100942764 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCCACAGGGGTATCTC
** *
100942791 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCCACAGGGGTATCTC
* * * *
100942818 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCCACAGGGGTATCTC
** *
100942845 AATAATTCTACCCTACAGGGGTAT
1 GGTAATTCTACCCCACAGGGGTAT
100942869 TTCAATAATT
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 92 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCCACAGGGGTATCTC
Found at i:100942795 original size:54 final size:54
Alignment explanation
Indices: 100942736--100942878 Score: 162
Period size: 54 Copynumber: 2.6 Consensus size: 54
100942726 AGGGGCAAAA
* * *
100942736 TGGTAATTTTACCCCAC-GAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCCACAG-GGGTATCTCAGTAATTCTACCCTACAAGGGTATTT
** *
100942790 TGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCCACAGGGGTATCTCAGTAATTCTACCCTACAAGGGTATTT
*** * * *
100942844 CAATAATTCTACCCTACAGGGGTATTTCAATAATT
1 TGGTAATTCTACCCCACAGGGGTATCTCAGTAATT
100942879 TTGTAAATCG
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 76 0.99
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
TGGTAATTCTACCCCACAGGGGTATCTCAGTAATTCTACCCTACAAGGGTATTT
Found at i:100942869 original size:27 final size:27
Alignment explanation
Indices: 100942766--100942878 Score: 172
Period size: 27 Copynumber: 4.2 Consensus size: 27
100942756 GGTATCTCGG
***
100942766 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAA
* *
100942793 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAA
*
100942820 TAATTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
100942847 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
100942874 TAATT
1 TAATT
100942879 TTGTAAATCG
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:100942893 original size:27 final size:27
Alignment explanation
Indices: 100942863--100943100 Score: 128
Period size: 27 Copynumber: 8.9 Consensus size: 27
100942853 TACCCTACAG
*
100942863 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTGTAAATCGA
** * *
100942890 GGGTAAAAT-AGTAATTCTGTAAATCAA
1 GGGT-ATTTCAGTAATTTTGTAAATCGA
* **
100942917 GGGTACTTGGGTAATTTTGCT-AATCGA
1 GGGTATTTCAGTAATTTTG-TAAATCGA
* * **
100942944 GGGTATTTTAGTAATTTTATAGGTCGA
1 GGGTATTTCAGTAATTTTGTAAATCGA
***
100942971 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTCAGTAATTTTGTAAATCGA
** ** *
100942997 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTCAGTAATTTTGTAAATCGA
** ** *
100943024 GGGATATTTTGGTAATTTTACAAA-CCA
1 GGG-TATTTCAGTAATTTTGTAAATCGA
* **
100943051 GGATATTTTGGTAATTTTGCT-AATCGA
1 GGGTATTTCAGTAATTTTG-TAAATCGA
*
100943078 GGGTATTTCAGTAATTTGGTAAA
1 GGGTATTTCAGTAATTTTGTAAA
100943101 CTAAAGTATT
Statistics
Matches: 168, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
26 26 0.15
27 139 0.83
28 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTGTAAATCGA
Found at i:100943061 original size:26 final size:27
Alignment explanation
Indices: 100942981--100943068 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
100942971 GGGTATTTCA
* * *
100942981 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGATATTTTG
*
100943008 GTAATTTTACAAACTAGGGATATTTTG
1 GTAATTTTACAAACCAGGGATATTTTG
100943035 GTAATTTTACAAACCA-GGATATTTTG
1 GTAATTTTACAAACCAGGGATATTTTG
100943061 GTAATTTT
1 GTAATTTT
100943069 GCTAATCGAG
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 18 0.32
27 38 0.68
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAACCAGGGATATTTTG
Found at i:100943085 original size:53 final size:53
Alignment explanation
Indices: 100942943--100943094 Score: 164
Period size: 54 Copynumber: 2.8 Consensus size: 53
100942933 TTGCTAATCG
* * * *
100942943 AGGG-TATTTTAGTAATTTTATAGGTCGAGGGTATTTCAGTAATTTCACAAATC
1 AGGGATATTTTGGTAATTTTACA-ATCGAGGGTATTTCAGTAATTTCACAAACC
* * * ** *
100942996 AGGGGTATTTTGGTAATTTTACAAACTAGGGATATTTTGGTAATTTTACAAACC
1 AGGGATATTTTGGTAATTTTACAATCGAGGG-TATTTCAGTAATTTCACAAACC
*
100943050 A-GGATATTTTGGTAATTTTGCTAATCGAGGGTATTTCAGTAATTT
1 AGGGATATTTTGGTAATTTTAC-AATCGAGGGTATTTCAGTAATTT
100943095 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
53 39 0.48
54 42 0.52
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
AGGGATATTTTGGTAATTTTACAATCGAGGGTATTTCAGTAATTTCACAAACC
Found at i:100944423 original size:187 final size:187
Alignment explanation
Indices: 100944161--100944627 Score: 774
Period size: 187 Copynumber: 2.5 Consensus size: 187
100944151 ATGACACAGT
* *
100944161 TTTTGCAATCTGTTAATAGATTTTTGTGGCGTTTCTAGAGAAAATGCCGGTATTTCACACATTTT
1 TTTTGCAATCTGTTAATAGATTTTTGTGGCATTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
* * * *
100944226 GTGGCGTTTATAAAAGTGCCACTAATAATAGACTATAAAGCGACGACGTTTTGAAATCTCTTTAA
66 GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
* * *
100944291 ATGTTTTGTGGCATTTTTATAGAAAGCGCCACTAATAACAAGGTAATAACGATGTCG
131 ATATTTTGTGGCATTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGTCG
* *
100944348 TTTTGCAATCTGTTAATCGATTTTTGTGGCATTTCTAGAGAAAACGCCGGTATTTCACACCTTTT
1 TTTTGCAATCTGTTAATAGATTTTTGTGGCATTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
100944413 GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
66 GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
*
100944478 ATATTTTGTGGCGTTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGTCG
131 ATATTTTGTGGCATTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGTCG
* * *
100944535 TTTTGCAATCTGTTAATAGATTTTTGTGG-AGTTTCTATAGAAAATGCCGGTAATTCTCACCTTT
1 TTTTGCAATCTGTTAATAGATTTTTGTGGCA-TTTCTAGAGAAAATGCCGGTATTTCACACCTTT
*
100944599 TGTGGCGTTTATAGAAGCGCCACTAATAA
65 TGTGGCGTTTATAAAAGCGCCACTAATAA
100944628 CAAGGATGTA
Statistics
Matches: 261, Mismatches: 18, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
186 1 0.00
187 260 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (187 bp):
TTTTGCAATCTGTTAATAGATTTTTGTGGCATTTCTAGAGAAAATGCCGGTATTTCACACCTTTT
GTGGCGTTTATAAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCTCTTTAA
ATATTTTGTGGCATTTTAATAGAAAGCGCCACTAATAACAAGGTAATAACGACGTCG
Found at i:100944558 original size:74 final size:75
Alignment explanation
Indices: 100944409--100944577 Score: 188
Period size: 75 Copynumber: 2.3 Consensus size: 75
100944399 ATTTCACACC
100944409 TTTTGTGGCG-TTTATA-AAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCT
1 TTTTGTGGCGTTTTATAGAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCT
* *
100944472 CTTTAAATA-
66 CGTTAAAGAT
* * ** *
100944481 TTTTGTGGCGTTTTAATAGAAAGCGCCACTAATAACAAG-GTA-ATAACGACGTCGTTTTGCAAT
1 TTTTGTGGCGTTTT-ATAGAAAGCGCCACTAATAA-AAGACTATAAAACGACAACGTTTTGAAAT
100944544 CT-GTTAATAGAT
64 CTCGTTAA-AGAT
*
100944556 TTTTGTGGAGTTTCTATAGAAA
1 TTTTGTGGCGTTT-TATAGAAA
100944578 ATGCCGGTAA
Statistics
Matches: 82, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
72 10 0.12
73 7 0.09
74 24 0.29
75 37 0.45
76 4 0.05
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (75 bp):
TTTTGTGGCGTTTTATAGAAAGCGCCACTAATAAAAGACTATAAAACGACAACGTTTTGAAATCT
CGTTAAAGAT
Found at i:100945103 original size:12 final size:12
Alignment explanation
Indices: 100945086--100945119 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
100945076 TTTTACATTA
100945086 ATATCTATATAT
1 ATATCTATATAT
100945098 ATATCTATATAT
1 ATATCTATATAT
*
100945110 ATATCCATAT
1 ATATCTATAT
100945120 GAAATTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATCTATATAT
Found at i:100945237 original size:22 final size:22
Alignment explanation
Indices: 100945168--100945230 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
100945158 TAATTAAGGG
* * *
100945168 TTTAAGGGTTTATTGTCTATAG-
1 TTTAAGGTTTTATAGT-TTTAGA
* *
100945190 TTTAAGGTTTTATGGTTTTGGA
1 TTTAAGGTTTTATAGTTTTAGA
100945212 TTTAAGG-TTTATAGTTTTA
1 TTTAAGGTTTTATAGTTTTA
100945231 AGTTTTATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 13 0.38
22 21 0.62
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.54
Consensus pattern (22 bp):
TTTAAGGTTTTATAGTTTTAGA
Found at i:100945367 original size:21 final size:21
Alignment explanation
Indices: 100945343--100945382 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
100945333 GGTTTTATGG
100945343 TTTAGGATTCAAGGTTTAATA
1 TTTAGGATTCAAGGTTTAATA
* *
100945364 TTTAGGGTTTAAGGTTTAA
1 TTTAGGATTCAAGGTTTAA
100945383 AATATAAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.45
Consensus pattern (21 bp):
TTTAGGATTCAAGGTTTAATA
Found at i:100945393 original size:21 final size:21
Alignment explanation
Indices: 100945353--100945395 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
100945343 TTTAGGATTC
* * *
100945353 AAGGTTTAATATTTAGGGTTT
1 AAGGTTTAAAATATAAGGTTT
100945374 AAGGTTTAAAATATAAGGTTT
1 AAGGTTTAAAATATAAGGTTT
100945395 A
1 A
100945396 TGACTAGAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (21 bp):
AAGGTTTAAAATATAAGGTTT
Found at i:100949752 original size:42 final size:41
Alignment explanation
Indices: 100949656--100949762 Score: 110
Period size: 42 Copynumber: 2.6 Consensus size: 41
100949646 TCGGGGTTTA
* * * *
100949656 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGATTGGTCTCGAAGGGCTTTTGAGCCAGAGTAAG
* *
100949697 AATCCGAGCTTGGTCTCGAAGGGCTTTTTGAGTCAGAGCTAAG
1 AATCCGAGATTGGTCTCGAAGGGC-TTTTGAGCCAGAG-TAAG
*
100949740 AAT-CGGGATTGGT-TCCGAAGGGC
1 AATCCGAGATTGGTCT-CGAAGGGC
100949763 GTCTGTGAAG
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 25 0.44
42 27 0.47
43 5 0.09
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (41 bp):
AATCCGAGATTGGTCTCGAAGGGCTTTTGAGCCAGAGTAAG
Found at i:100952289 original size:23 final size:22
Alignment explanation
Indices: 100952263--100952305 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
100952253 TTTTGAATCA
* *
100952263 TATGTTTTGGTATGACTTTGGCT
1 TATGATTTGGCATGA-TTTGGCT
100952286 TATGATTTGGCATGATTTGG
1 TATGATTTGGCATGATTTGG
100952306 TATAGATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.16, C:0.07, G:0.28, T:0.49
Consensus pattern (22 bp):
TATGATTTGGCATGATTTGGCT
Found at i:100955613 original size:38 final size:38
Alignment explanation
Indices: 100955562--100955637 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
100955552 ACCGAATTGA
100955562 TTGAAGTGAACCGATCAAAGATTGGGCAGCCCAAAATT
1 TTGAAGTGAACCGATCAAAGATTGGGCAGCCCAAAATT
100955600 TTGAAGTGAACCGATCAAAGATTGGGCAGCCCAAAATT
1 TTGAAGTGAACCGATCAAAGATTGGGCAGCCCAAAATT
100955638 GGCCATATGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (38 bp):
TTGAAGTGAACCGATCAAAGATTGGGCAGCCCAAAATT
Found at i:100962833 original size:93 final size:93
Alignment explanation
Indices: 100962721--100962892 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
100962711 CGCCCATAAG
* * * *
100962721 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAAGTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
100962786 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
* *
100962814 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
*
100962879 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
100962893 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:100962881 original size:46 final size:46
Alignment explanation
Indices: 100962722--100962889 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
100962712 GCCCATAAGC
* * *
100962722 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
* * * * ** *
100962768 GAAGTCAGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCCA-TAAAT
*
100962815 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
*
100962861 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
100962890 TGCTCAACCA
Statistics
Matches: 98, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 60 0.61
47 29 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAT
Found at i:100972193 original size:124 final size:126
Alignment explanation
Indices: 100972026--100972256 Score: 344
Period size: 126 Copynumber: 1.8 Consensus size: 126
100972016 TAGAATAAAT
*
100972026 GTTTTTAATTTAATAAAAAGATGATAATTATTAATTTATAATTATATCCATTATAA-TATATATT
1 GTTTTTAA-TTAATAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATTATATATT
*
100972090 AATTATTATCAATTTTAG-ATAGAGTTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAA
65 AATTATTATCAA-TTTAGCATAGAATTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAA
* *
100972152 GTTTTTAA-TAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATAT
1 GTTTTTAATTAATAAAAAGATGATAAT-TATTAATATATAATTATATCCATTATAA-TTATATAT
* *
100972215 TAATTTTTATCAATTTAGCATAGAATTAGGATTAGTTTTAAT
64 TAATTATTATCAATTTAGCATAGAATTAGGATTAGTGTTAAT
100972257 CATATCTCAT
Statistics
Matches: 95, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
124 41 0.43
125 6 0.06
126 48 0.51
ACGTcount: A:0.40, C:0.03, G:0.08, T:0.48
Consensus pattern (126 bp):
GTTTTTAATTAATAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATTATATATTA
ATTATTATCAATTTAGCATAGAATTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAA
Found at i:100972271 original size:124 final size:123
Alignment explanation
Indices: 100972026--100972261 Score: 322
Period size: 124 Copynumber: 1.9 Consensus size: 123
100972016 TAGAATAAAT
*
100972026 GTTTTTAATTTAATAAAAAGATGATAATTATTAATTTATAATTATATCCATTATAATATATATTA
1 GTTTTTAA-TTAATAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTA
*
100972091 ATTATTATCAATTTTAGATAGAGTTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAA
65 ATTATTATCAATTTTAGATAGAATTAGGATTAG-GTT-ATTTAATCATATTTTTTTGATAA
* *
100972152 GTTTTTAA-TAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATAT
1 GTTTTTAATTAATAAAAAGATGATAAT-TATTAATATATAATTATATCCATTATAA--TATATAT
*
100972215 TAATTTTTATCAA-TTTAGCATAGAATTAGGATTA-G-T-TTTAATCATAT
63 TAATTATTATCAATTTTAG-ATAGAATTAGGATTAGGTTATTTAATCATAT
100972262 CTCATTTTTG
Statistics
Matches: 101, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
121 11 0.11
123 1 0.01
124 42 0.42
125 6 0.06
126 41 0.41
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (123 bp):
GTTTTTAATTAATAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTAA
TTATTATCAATTTTAGATAGAATTAGGATTAGGTTATTTAATCATATTTTTTTGATAA
Found at i:100972286 original size:126 final size:123
Alignment explanation
Indices: 100972036--100972287 Score: 298
Period size: 126 Copynumber: 2.0 Consensus size: 123
100972026 GTTTTTAATT
*
100972036 TAATAAAAAGATGATAATTATTAATTTATAATTATATCCATTATAATATATATTAATTATTATCA
1 TAATAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCA
* * * **
100972101 ATTTTAGATAGAGTTAGGATTAGTGTTAATTTAATCATATTTTTTTGATAAGTTTTTAA
66 ATTTTAGATAGAATTAGGATTAGTGTTAATATAATCATATTTTTTT-ATAAATAATTAA
* * *
100972160 TAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATATTAATTTTTA
1 TAATAAAAAGATGATAAT-TATTAATATATAATTATATCCATTATAA--TATATATTAATTATTA
*
100972224 TCAA-TTTAGCATAGAATTAGGATTAGTTTTAATCAT-ATC-TCATTTTTGTT-TAAATAAATTA
63 TCAATTTTAG-ATAGAATTAGGATTAGTGTTAAT-ATAATCAT-ATTTTT-TTATAAAT-AATTA
100972285 A
123 A
100972286 TA
1 TA
100972288 GCATTAATAA
Statistics
Matches: 110, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
124 41 0.37
125 11 0.10
126 55 0.50
127 3 0.03
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (123 bp):
TAATAAAAAGATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCA
ATTTTAGATAGAATTAGGATTAGTGTTAATATAATCATATTTTTTTATAAATAATTAA
Found at i:100972302 original size:17 final size:18
Alignment explanation
Indices: 100972276--100972309 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
100972266 TTTTTGTTTA
100972276 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
100972293 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
100972310 ATAGTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:100974167 original size:54 final size:54
Alignment explanation
Indices: 100974083--100974188 Score: 203
Period size: 54 Copynumber: 2.0 Consensus size: 54
100974073 GCAAAGAAAA
*
100974083 TTGGTGCATTGAGGGTGATTATTTCGAAGGTCCGATACAAGCTAAGTCTAGGCT
1 TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGGCT
100974137 TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGG
1 TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGG
100974189 GTTTAAAAGC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (54 bp):
TTGGTGCATTGAGGGTGATTATTTCAAAGGTCCGATACAAGCTAAGTCTAGGCT
Found at i:100980280 original size:23 final size:22
Alignment explanation
Indices: 100980249--100980291 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
100980239 TTGTGAATCA
* *
100980249 TATGTTTTGGTATGACTTTGGCT
1 TATGGTTTGGCATGA-TTTGGCT
100980272 TATGGTTTGGCATGATTTGG
1 TATGGTTTGGCATGATTTGG
100980292 TATGGATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.14, C:0.07, G:0.30, T:0.49
Consensus pattern (22 bp):
TATGGTTTGGCATGATTTGGCT
Found at i:100988084 original size:31 final size:31
Alignment explanation
Indices: 100988046--100988106 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
100988036 TTCATATTTA
*
100988046 ATATTTCATAACACTGGGCCGAAGCCTTTTC
1 ATATTTCATAACACTGGGCCAAAGCCTTTTC
** *
100988077 ATATTTCATATTATTGGGCCAAAGCCTTTT
1 ATATTTCATAACACTGGGCCAAAGCCTTTT
100988107 ACTGTAAACG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCCAAAGCCTTTTC
Found at i:100988375 original size:23 final size:23
Alignment explanation
Indices: 100988321--100988463 Score: 250
Period size: 23 Copynumber: 6.1 Consensus size: 23
100988311 CCTAGCCTCT
*
100988321 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
100988344 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
100988368 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
100988391 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
100988414 TTTTAATAACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
100988438 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
100988461 TTT
1 TTT
100988464 TTCACTTCCT
Statistics
Matches: 115, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
23 71 0.62
24 44 0.38
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:100988401 original size:70 final size:70
Alignment explanation
Indices: 100988321--100988463 Score: 268
Period size: 70 Copynumber: 2.0 Consensus size: 70
100988311 CCTAGCCTCT
*
100988321 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATA
100988386 AGCCC
66 AGCCC
*
100988391 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATA
100988456 AGCCC
66 AGCCC
100988461 TTT
1 TTT
100988464 TTCACTTCCT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (70 bp):
TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATA
AGCCC
Found at i:100988464 original size:47 final size:47
Alignment explanation
Indices: 100988300--100988464 Score: 262
Period size: 47 Copynumber: 3.5 Consensus size: 47
100988290 GCTTTATCAT
* *
100988300 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTA
100988349 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
*
100988395 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
100988442 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
100988465 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 6
0.93 0.03 0.05
Matches are distributed among these distances:
46 23 0.21
47 71 0.64
48 5 0.05
49 12 0.11
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:100988541 original size:20 final size:20
Alignment explanation
Indices: 100988516--100988580 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
100988506 ATGAATACAG
100988516 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
100988536 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
100988556 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
100988576 CATGT
1 CATGT
100988581 TTTTCAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:100988547 original size:11 final size:11
Alignment explanation
Indices: 100988516--100988569 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
100988506 ATGAATACAG
100988516 CATGTGCATAT
1 CATGTGCATAT
*
100988527 CA--TACATAT
1 CATGTGCATAT
100988536 CATGTGCATAT
1 CATGTGCATAT
* *
100988547 CA--TACATGT
1 CATGTGCATAT
100988556 CATGTGCATAT
1 CATGTGCATAT
100988567 CAT
1 CAT
100988570 ACATACCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:100991277 original size:44 final size:44
Alignment explanation
Indices: 100991214--100991302 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
100991204 AAAAGTGTAC
100991214 ATAGAGTAGAATTTTTCTAGGTTTTTCAGCAATTTCTGTGTCAA
1 ATAGAGTAGAATTTTTCTAGGTTTTTCAGCAATTTCTGTGTCAA
100991258 ATAGAGTAGAATTTTTCTAGGTTTTTCAGCAATTTCTGTGTCAA
1 ATAGAGTAGAATTTTTCTAGGTTTTTCAGCAATTTCTGTGTCAA
100991302 A
1 A
100991303 CTTGCAGGCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (44 bp):
ATAGAGTAGAATTTTTCTAGGTTTTTCAGCAATTTCTGTGTCAA
Found at i:100991734 original size:23 final size:23
Alignment explanation
Indices: 100991704--100991750 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
100991694 TTAGAATTAG
*
100991704 ATAGTTTTGAAGTTAAGTTTAAT
1 ATAGTTTTGAAATTAAGTTTAAT
100991727 ATAGTTTTGAAATTAAGTTTAAT
1 ATAGTTTTGAAATTAAGTTTAAT
100991750 A
1 A
100991751 AATTAAACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (23 bp):
ATAGTTTTGAAATTAAGTTTAAT
Found at i:100992961 original size:13 final size:13
Alignment explanation
Indices: 100992945--100992979 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
100992935 TAAAACTAAA
100992945 AATTAACTAAATT
1 AATTAACTAAATT
100992958 AATTAACTAAATT
1 AATTAACTAAATT
100992971 AATTAACTA
1 AATTAACTA
100992980 TGAACATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (13 bp):
AATTAACTAAATT
Found at i:100997940 original size:10 final size:10
Alignment explanation
Indices: 100997925--100997955 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
100997915 GGGTAATCTG
*
100997925 ATATATATAT
1 ATATATTTAT
100997935 ATATATTTAT
1 ATATATTTAT
100997945 ATATATTTAT
1 ATATATTTAT
100997955 A
1 A
100997956 CTTAGCTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (10 bp):
ATATATTTAT
Found at i:100998837 original size:21 final size:20
Alignment explanation
Indices: 100998813--100998858 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
100998803 TGTCCAAAAT
100998813 GAAGTGGATAGATTAGTTTTG
1 GAAGTGGA-AGATTAGTTTTG
* *
100998834 GAAGTTGAATATTAGTTTTG
1 GAAGTGGAAGATTAGTTTTG
100998854 GAAGT
1 GAAGT
100998859 TGAATGGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.39
Consensus pattern (20 bp):
GAAGTGGAAGATTAGTTTTG
Found at i:100998849 original size:20 final size:20
Alignment explanation
Indices: 100998824--100998863 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
100998814 AAGTGGATAG
100998824 ATTAGTTTTGGAAGTTGAAT
1 ATTAGTTTTGGAAGTTGAAT
100998844 ATTAGTTTTGGAAGTTGAAT
1 ATTAGTTTTGGAAGTTGAAT
100998864 GGCATGACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (20 bp):
ATTAGTTTTGGAAGTTGAAT
Found at i:101015346 original size:15 final size:14
Alignment explanation
Indices: 101015326--101015381 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 14
101015316 GATATGGTAT
101015326 CTTGGATTTCTGTA
1 CTTGGATTTCTGTA
* *
101015340 CCTTGGATATCTTTA
1 -CTTGGATTTCTGTA
101015355 TCTTGGATTCCTCTGT-
1 -CTTGGATT--TCTGTA
101015371 CTTGGATTTCT
1 CTTGGATTTCT
101015382 TTATTCTAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 3 0.09
15 27 0.79
17 4 0.12
ACGTcount: A:0.12, C:0.20, G:0.18, T:0.50
Consensus pattern (14 bp):
CTTGGATTTCTGTA
Found at i:101015357 original size:30 final size:29
Alignment explanation
Indices: 101015323--101015385 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 29
101015313 TATGATATGG
101015323 TATCTTGGATT-TCTGTACCTTGGATATCTT
1 TATCTTGGATTCTCTGT--CTTGGATATCTT
*
101015353 TATCTTGGATTCCTCTGTCTTGGATTTCTT
1 TATCTTGGATT-CTCTGTCTTGGATATCTT
101015383 TAT
1 TAT
101015386 TCTAGTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 25 0.83
32 5 0.17
ACGTcount: A:0.14, C:0.17, G:0.16, T:0.52
Consensus pattern (29 bp):
TATCTTGGATTCTCTGTCTTGGATATCTT
Found at i:101017938 original size:31 final size:31
Alignment explanation
Indices: 101017903--101017969 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
101017893 GGACCATAGC
101017903 CCTTTTCACAATTCATAACACTGGGCCGAAG
1 CCTTTTCACAATTCATAACACTGGGCCGAAG
* * ** *
101017934 CCTTTTCATATTTCATATTACTGGGCTGAAG
1 CCTTTTCACAATTCATAACACTGGGCCGAAG
101017965 CCTTT
1 CCTTT
101017970 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (31 bp):
CCTTTTCACAATTCATAACACTGGGCCGAAG
Found at i:101018052 original size:42 final size:42
Alignment explanation
Indices: 101017993--101018084 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
101017983 TGGCCCATAG
**
101017993 GCCCATTTCAATATCACAT-ATAATGTCAATGAAAGAATGCAA
1 GCCCATTTCAATATCACATGA-AATACCAATGAAAGAATGCAA
* *
101018035 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAAAGAATGCAA
*
101018077 ACCCATTT
1 GCCCATTT
101018085 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAAAGAATGCAA
Found at i:101018284 original size:47 final size:47
Alignment explanation
Indices: 101018224--101018416 Score: 307
Period size: 47 Copynumber: 4.1 Consensus size: 47
101018214 GGCCTTGCCT
* * *
101018224 CTTTTAATAACTGGGGCAAAAGCCGTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* *
101018271 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* *
101018318 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCC
101018366 C-TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
101018412 CTTTT
1 CTTTT
101018417 TGCACTTCCT
Statistics
Matches: 135, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
46 22 0.16
47 91 0.67
48 22 0.16
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (47 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:101018286 original size:24 final size:24
Alignment explanation
Indices: 101018224--101018416 Score: 295
Period size: 23 Copynumber: 8.2 Consensus size: 24
101018214 GGCCTTGCCT
*
101018224 CTTTTAATAACTGGGGCAAAAG-C
1 CTTTTAATAACTGGGGCATAAGCC
* *
101018247 CGTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
101018271 CTTTTGATCACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
101018295 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
101018318 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
101018342 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
101018366 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
101018389 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
101018412 CTTTT
1 CTTTT
101018417 TGCACTTCCT
Statistics
Matches: 156, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
23 85 0.54
24 71 0.46
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:101018492 original size:20 final size:20
Alignment explanation
Indices: 101018467--101018527 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
101018457 TTATGATTAC
101018467 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
101018487 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
101018507 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
101018527 A
1 A
101018528 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:101018602 original size:25 final size:25
Alignment explanation
Indices: 101018570--101018617 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
101018560 ATACATAAAC
* * *
101018570 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
101018595 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
101018618 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:101019809 original size:27 final size:27
Alignment explanation
Indices: 101019779--101019843 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
101019769 GGGCATATTC
*
101019779 GTCATTTTACCATACAGGGG-TATCACG
1 GTCACTTTACCATACAGGGGCT-TCACG
* *
101019806 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTCACG
101019833 GTCACTTTACC
1 GTCACTTTACC
101019844 TAATAGGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTCACG
Found at i:101019933 original size:27 final size:27
Alignment explanation
Indices: 101019912--101020202 Score: 233
Period size: 27 Copynumber: 10.8 Consensus size: 27
101019902 AAGGGTATTT
*
101019912 CAGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
101019939 CAGTAATTCTGTAAATC-AAGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
101019965 C-GATAATTATGTAAATC-AGGGGTAAAA
1 CAG-TAATTCTGTAAATCGA-GGGTAAAA
* * *
101019992 CGGTAATTATGTAAAT-TAGGGGTAAAA
1 CAGTAATTCTGTAAATCGA-GGGTAAAA
* *
101020019 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
101020046 C-GATAATTATATAAATC-AGGGGTAAAA
1 CAG-TAATTCTGTAAATCGA-GGGTAAAA
* * *
101020073 CGGTAATTATGTAAAT-TAGGGGTAAAA
1 CAGTAATTCTGTAAATCGA-GGGTAAAA
* * *
101020100 CGGTAATTCTGTAAGTCAAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
101020127 C-GATAATTATGTAAATC-AGAGGTAAAA
1 CAG-TAATTCTGTAAATCGAG-GGTAAAA
*
101020154 C-GATAATTATGTAAATCGAGGGTAAAA
1 CAG-TAATTCTGTAAATCGAGGGTAAAA
* * **
101020181 CGGTAATTTTACAAATCGAGGG
1 CAGTAATTCTGTAAATCGAGGG
101020203 CATTTCAGTA
Statistics
Matches: 231, Mismatches: 19, Indels: 28
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.00
26 28 0.12
27 195 0.84
28 7 0.03
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (27 bp):
CAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:101020042 original size:54 final size:53
Alignment explanation
Indices: 101019914--101020188 Score: 338
Period size: 54 Copynumber: 5.1 Consensus size: 53
101019904 GGGTATTTCA
* * * *
101019914 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCA-AGGTAAAACG
1 GTAATTATGTAAATC-AGGGTAAAACGGTAATTATGTAAATCAGGGGTAAAACG
* *
101019967 ATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCA-GGGTAAAACGGTAATTATGTAAATCAGGGGTAAAACG
* * * *
101020021 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATATAAATCAGGGGTAAAACG
1 GTAATTATGTAAATC-AGGGTAAAACGGTAATTATGTAAATCAGGGGTAAAACG
* * * *
101020075 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCAAGGGTAAAACG
1 GTAATTATGTAAATCA-GGGTAAAACGGTAATTATGTAAATCAGGGGTAAAACG
* *
101020129 ATAATTATGTAAATCAGAGGTAAAACGATAATTATGTAAATC-GAGGGTAAAACG
1 GTAATTATGTAAATCAG-GGTAAAACGGTAATTATGTAAATCAG-GGGTAAAACG
101020183 GTAATT
1 GTAATT
101020189 TTACAAATCG
Statistics
Matches: 189, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
52 1 0.01
53 38 0.20
54 149 0.79
55 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.28
Consensus pattern (53 bp):
GTAATTATGTAAATCAGGGTAAAACGGTAATTATGTAAATCAGGGGTAAAACG
Found at i:101020215 original size:81 final size:81
Alignment explanation
Indices: 101019914--101020188 Score: 421
Period size: 81 Copynumber: 3.4 Consensus size: 81
101019904 GGGTATTTCA
* * * * *
101019914 GTAATTTTGTAAA-TCGAGGGTAAAACAGTAATTCTGTAAATC-AAGGTAAAACGATAATTATGT
1 GTAATTATGTAAATTAG-GGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGT
101019977 AAATCAGGGGTAAAACG
65 AAATCAGGGGTAAAACG
*
101019994 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATATA
1 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
101020059 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
*
101020075 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCAAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
*
101020140 AATCAGAGGTAAAACG
66 AATCAGGGGTAAAACG
* *
101020156 ATAATTATGTAAA-TCGAGGGTAAAACGGTAATT
1 GTAATTATGTAAATTAG-GGGTAAAACGGTAATT
101020189 TTACAAATCG
Statistics
Matches: 181, Mismatches: 11, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
80 37 0.20
81 144 0.80
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
AATCAGGGGTAAAACG
Found at i:101023104 original size:41 final size:41
Alignment explanation
Indices: 101023059--101023176 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
101023049 TGAAAGATAA
101023059 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
101023100 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
101023130 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
101023171 ATGTAG
1 ATGTAG
101023177 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:101023115 original size:71 final size:71
Alignment explanation
Indices: 101023027--101023190 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
101023017 GAGATGTATC
101023027 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101023092 AGGACA
66 AGGACA
101023098 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101023163 AGGACA
66 AGGACA
101023169 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
101023191 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:101030680 original size:41 final size:41
Alignment explanation
Indices: 101030635--101030752 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
101030625 TGAAAGATAA
101030635 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
101030676 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
101030706 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
101030747 ATGTAG
1 ATGTAG
101030753 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:101030691 original size:71 final size:71
Alignment explanation
Indices: 101030603--101030766 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
101030593 GAGATGTATC
101030603 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101030668 AGGACA
66 AGGACA
101030674 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
101030739 AGGACA
66 AGGACA
101030745 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
101030767 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:101033381 original size:31 final size:31
Alignment explanation
Indices: 101033346--101033412 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
101033336 GGACCATAGC
*
101033346 CCTTTTCACAATTCATAACACTGGGCCGAAG
1 CCTTTTCACAATTCATAACACTAGGCCGAAG
* * ** *
101033377 CCTTTTCATATTTCATATTACTAGGCTGAAG
1 CCTTTTCACAATTCATAACACTAGGCCGAAG
101033408 CCTTT
1 CCTTT
101033413 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.36
Consensus pattern (31 bp):
CCTTTTCACAATTCATAACACTAGGCCGAAG
Found at i:101033495 original size:42 final size:42
Alignment explanation
Indices: 101033436--101033527 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
101033426 TGGCCCATAG
**
101033436 GCCCATTTCAATATCACAT-ATAATGTCAATGAAAGAATGCAA
1 GCCCATTTCAATATCACATGA-AATACCAATGAAAGAATGCAA
* *
101033478 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAAAGAATGCAA
*
101033520 ACCCATTT
1 GCCCATTT
101033528 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAAAGAATGCAA
Done.