Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 327 of 425
Found at i:101684114 original size:39 final size:39
Alignment explanation
Indices: 101684033--101684195 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
101684023 TATGGTAACC
* *
101684033 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
***
101684073 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATGGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
101684112 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
101684151 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
101684190 CGCACA
1 CGCACA
101684196 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:101689323 original size:26 final size:26
Alignment explanation
Indices: 101689284--101689391 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
101689274 TGATACAAAT
101689284 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
101689310 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
101689336 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
101689362 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
101689388 TGAT
1 TGAT
101689392 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:101697412 original size:45 final size:45
Alignment explanation
Indices: 101697348--101697437 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
101697338 TGTTACCTCA
* *
101697348 CATAGTCTTTTATGTGCTTATTAGATTTAATTAATCGTTTGAATT
1 CATAGTCTTTTATATGCTTATTAGATTTAATTAATCATTTGAATT
*
101697393 CATAGTCTTTTATATGCTTATTCGATTTAATTAATCATTTGAATT
1 CATAGTCTTTTATATGCTTATTAGATTTAATTAATCATTTGAATT
101697438 AACATAGGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.28, C:0.10, G:0.11, T:0.51
Consensus pattern (45 bp):
CATAGTCTTTTATATGCTTATTAGATTTAATTAATCATTTGAATT
Found at i:101707134 original size:45 final size:45
Alignment explanation
Indices: 101706987--101707119 Score: 132
Period size: 45 Copynumber: 3.0 Consensus size: 45
101706977 CTTACTTCAC
* * * * * *
101706987 ATATCGATGCCACTATCCAAGACAGGGTCTTACACG-AATCA-A-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAACACAT
* * *
101707029 ATA-CGATGTCGATGTCCCAGACATGGTCTTACATGTAACCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAACACAT
*
101707073 ATATCGATGCCAATGTCCCAGACGTGGTCTTACATG-AGAACACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACATGTA-AACACAT
101707118 AT
1 AT
101707120 TGGAAATCCT
Statistics
Matches: 74, Mismatches: 12, Indels: 7
0.80 0.13 0.08
Matches are distributed among these distances:
41 25 0.34
42 7 0.09
43 1 0.01
44 4 0.05
45 37 0.50
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACATGTAAACACAT
Found at i:101708872 original size:47 final size:47
Alignment explanation
Indices: 101708740--101708873 Score: 196
Period size: 47 Copynumber: 2.9 Consensus size: 47
101708730 TGATTTTCAT
* * *
101708740 ATAAGACCATAGCTGGGCTATGGCATCGGTGTGATATGAGCTTCCGC
1 ATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCCGC
* *
101708787 ATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCTGT
1 ATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCCGC
* * *
101708834 GTAAGACTATATCTGGGATATGGCATCAGTGTGATATGTG
1 ATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTG
101708874 ATCCGTGTAA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 79 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (47 bp):
ATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCCGC
Found at i:101708912 original size:46 final size:46
Alignment explanation
Indices: 101708741--101708922 Score: 166
Period size: 47 Copynumber: 3.9 Consensus size: 46
101708731 GATTTTCATA
* * * * **
101708741 TAAGACCATAGCTGGGCTATGGCATCGGTGTGATATGAGCTTCCGCA
1 TAAGACAATAGCTGGGATATGGCATCGGTGTGATATGTG-ATCCGTG
* * * *
101708788 TAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGCTTCTGTG
1 TAAGACAATAGCTGGGATATGGCATCGGTGTGATATGTG-ATCCGTG
* * *
101708835 TAAGACTATATCTGGGATATGGCATCAGTGTGATATGTGATCCGTG
1 TAAGACAATAGCTGGGATATGGCATCGGTGTGATATGTGATCCGTG
* * * * *
101708881 TAAGGCAATGGCTGGGCTATGGCTTTGGTGTGTGATATGTGA
1 TAAGACAATAGCTGGGATATGGC-ATCG-GTGTGATATGTGA
101708923 CTATGTGCAA
Statistics
Matches: 115, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
46 23 0.20
47 79 0.69
48 13 0.11
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (46 bp):
TAAGACAATAGCTGGGATATGGCATCGGTGTGATATGTGATCCGTG
Found at i:101711020 original size:14 final size:15
Alignment explanation
Indices: 101711003--101711031 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
101710993 TCACGAAAAT
101711003 TTCACACAT-ATAAA
1 TTCACACATAATAAA
101711017 TTCACACATAATAAA
1 TTCACACATAATAAA
101711032 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:101715214 original size:2 final size:2
Alignment explanation
Indices: 101715207--101715237 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
101715197 TGTACATGTG
101715207 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
101715238 GAGAGTCAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:101719628 original size:72 final size:71
Alignment explanation
Indices: 101719518--101719651 Score: 189
Period size: 72 Copynumber: 1.9 Consensus size: 71
101719508 TGTTAATGCG
** *
101719518 TTGGGGTCTGGGTACTGACTTTGTGTATAAACCTGTGAGTAGCTC-AATGAGCGGGCATTACATG
1 TTGGGGTCCAGGTACTGACTTTGTGTACAAACCTGTGAGTAGCTCAAAT--GCGGGCATTACATG
101719582 ATAATGTT
64 ATAATGTT
* * *
101719590 TTGGGGTCCAGGTGCTGACTTTGTGTACAGACTTGTGAGTAGCTCAAATGCGGGCATTACAT
1 TTGGGGTCCAGGTACTGACTTTGTGTACAAACCTGTGAGTAGCTCAAATGCGGGCATTACAT
101719652 AATATGTGGT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
71 13 0.24
72 39 0.71
73 3 0.05
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (71 bp):
TTGGGGTCCAGGTACTGACTTTGTGTACAAACCTGTGAGTAGCTCAAATGCGGGCATTACATGAT
AATGTT
Found at i:101722475 original size:31 final size:31
Alignment explanation
Indices: 101722440--101722501 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
101722430 CCCTTTTCAT
101722440 ATTTCATA-TCTCATAACACTGGGCCGAAGCC
1 ATTTCA-AGTCTCATAACACTGGGCCGAAGCC
* **
101722471 ATTTCAAGTTTCATATTACTGGGCCGAAGCC
1 ATTTCAAGTCTCATAACACTGGGCCGAAGCC
101722502 TTTACTGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
ATTTCAAGTCTCATAACACTGGGCCGAAGCC
Found at i:101722749 original size:23 final size:23
Alignment explanation
Indices: 101722719--101722838 Score: 177
Period size: 23 Copynumber: 5.1 Consensus size: 23
101722709 CCTTGCCTCT
*
101722719 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
101722742 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
101722765 TTTTGATCACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
101722789 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
101722813 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101722836 TTT
1 TTT
101722839 TGCACTTCCT
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
23 46 0.52
24 43 0.48
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:101722785 original size:24 final size:24
Alignment explanation
Indices: 101722717--101722839 Score: 187
Period size: 24 Copynumber: 5.2 Consensus size: 24
101722707 GGCCTTGCCT
*
101722717 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
101722741 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
101722764 CTTTTGATCACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
101722788 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
101722812 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
101722835 CTTTT
1 CTTTT
101722840 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 43 0.48
24 47 0.52
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:101722911 original size:9 final size:9
Alignment explanation
Indices: 101722897--101722973 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
101722887 ATCTAATGTG
101722897 CATATCATA
1 CATATCATA
*
101722906 CATATCATGTG
1 CATATCA--TA
101722917 CATATCATA
1 CATATCATA
* *
101722926 CATGTCATGTG
1 CATATCA--TA
101722937 CATATCATA
1 CATATCATA
*
101722946 CATATCATGTG
1 CATATCA--TA
101722957 CATATCATA
1 CATATCATA
101722966 CATATCAT
1 CATATCAT
101722974 GTGCATACCA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:101722915 original size:20 final size:20
Alignment explanation
Indices: 101722892--101722989 Score: 178
Period size: 20 Copynumber: 4.9 Consensus size: 20
101722882 TGAACATCTA
101722892 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
*
101722912 ATGTGCATATCATACATGTC
1 ATGTGCATATCATACATATC
101722932 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
101722952 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
*
101722972 ATGTGCATACCATACATA
1 ATGTGCATATCATACATA
101722990 AACCCTAGGG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 75 1.00
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:101730778 original size:31 final size:31
Alignment explanation
Indices: 101730743--101730804 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
101730733 CCCTTTTCAT
101730743 ATTTCATA-TCTCATAACACTGGGCCGAAGCC
1 ATTTCA-AGTCTCATAACACTGGGCCGAAGCC
* **
101730774 ATTTCAAGTTTCATATTACTGGGCCGAAGCC
1 ATTTCAAGTCTCATAACACTGGGCCGAAGCC
101730805 TTTACTGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
ATTTCAAGTCTCATAACACTGGGCCGAAGCC
Found at i:101731080 original size:47 final size:47
Alignment explanation
Indices: 101731020--101731166 Score: 258
Period size: 47 Copynumber: 3.1 Consensus size: 47
101731010 GGCCTTGCCT
* * *
101731020 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
101731067 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
101731114 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
101731161 CTTTTG
1 CTTTTG
101731167 CACTTCCTCC
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 95 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:101731088 original size:24 final size:24
Alignment explanation
Indices: 101731020--101731165 Score: 226
Period size: 23 Copynumber: 6.2 Consensus size: 24
101731010 GGCCTTGCCT
*
101731020 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
101731044 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
101731067 CTTTTGATCACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
101731091 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
101731114 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
101731138 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
101731161 CTTTT
1 CTTTT
101731166 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
23 64 0.58
24 46 0.42
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:101731237 original size:9 final size:9
Alignment explanation
Indices: 101731223--101731299 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
101731213 ATCTCATGTG
101731223 CATATCATA
1 CATATCATA
*
101731232 CATATCATGTG
1 CATATCA--TA
101731243 CATATCATA
1 CATATCATA
* *
101731252 CATGTCATGTG
1 CATATCA--TA
101731263 CATATCATA
1 CATATCATA
*
101731272 CATATCATGTG
1 CATATCA--TA
101731283 CATATCATA
1 CATATCATA
101731292 CATATCAT
1 CATATCAT
101731300 GTGCATACCA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:101731239 original size:20 final size:20
Alignment explanation
Indices: 101731211--101731315 Score: 183
Period size: 20 Copynumber: 5.2 Consensus size: 20
101731201 ACATTTATGA
*
101731211 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
101731231 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
101731251 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
101731271 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
101731291 ACATATCATGTGCATACCAT
1 ACATATCATGTGCATATCAT
101731311 ACATA
1 ACATA
101731316 AACCCTAGGG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 81 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.33
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:101738286 original size:45 final size:43
Alignment explanation
Indices: 101738237--101738412 Score: 153
Period size: 45 Copynumber: 4.1 Consensus size: 43
101738227 AGGATTTTTG
* *
101738237 ATATGTGTTCTCATGTAAGACCACGTCTAGGACATTGGCATCGAT
1 ATATGTGAT-TCATGTAAGACCACGTCTGGGACATTGGCATCG-T
* * * ** *
101738282 ATATGTGGTTACGTGTAAGACCATGTCTGGGACACCGGTATCGT
1 ATATGTGATT-CATGTAAGACCACGTCTGGGACATTGGCATCGT
* *
101738326 AT-T-TGATTCGTGTAAGACC-CTGTCTGGGACAATGGCATCG-
1 ATATGTGATTCATGTAAGACCAC-GTCTGGGACATTGGCATCGT
* * * *
101738366 ATATGTGATAGCATGTAAGACCACGTCTGAGACGTTGGCATTGT
1 ATATGTGAT-TCATGTAAGACCACGTCTGGGACATTGGCATCGT
101738410 ATA
1 ATA
101738413 ATATGCATGA
Statistics
Matches: 106, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
40 2 0.02
41 28 0.26
42 8 0.08
43 26 0.25
44 8 0.08
45 34 0.32
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
ATATGTGATTCATGTAAGACCACGTCTGGGACATTGGCATCGT
Found at i:101744442 original size:40 final size:40
Alignment explanation
Indices: 101744386--101744480 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
101744376 TTGAACACTA
* * *
101744386 GCTATGACACGGGCATGTCTAGGCCGTGTGAGGGACATGG
1 GCTATGACACGAGCATGTCTAGGCCATGTGAGGGACACGG
*
101744426 GCTATGACACGAGCATGTTTAGGCCATGTGAGGGACACGG
1 GCTATGACACGAGCATGTCTAGGCCATGTGAGGGACACGG
*
101744466 GCTAGGGACACGAGC
1 GCTA-TGACACGAGC
101744481 GTGTGTTCAG
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 40 0.82
41 9 0.18
ACGTcount: A:0.23, C:0.21, G:0.38, T:0.18
Consensus pattern (40 bp):
GCTATGACACGAGCATGTCTAGGCCATGTGAGGGACACGG
Found at i:101744592 original size:23 final size:23
Alignment explanation
Indices: 101744560--101744616 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
101744550 GGTCCCAATG
*
101744560 CACACTGGCGTGTGAATTACTTC
1 CACACAGGCGTGTGAATTACTTC
* *
101744583 CACACGGGCGTGTGCATTACTTC
1 CACACAGGCGTGTGAATTACTTC
*
101744606 TACACAGGCGT
1 CACACAGGCGT
101744617 ATGAGACTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (23 bp):
CACACAGGCGTGTGAATTACTTC
Found at i:101745609 original size:13 final size:13
Alignment explanation
Indices: 101745587--101745619 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
101745577 TTTCAAACCA
101745587 AAATAC-ATAAGT
1 AAATACAATAAGT
101745599 AAATACAATAAGT
1 AAATACAATAAGT
*
101745612 AATTACAA
1 AAATACAA
101745620 CTTCAACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.61, C:0.09, G:0.06, T:0.24
Consensus pattern (13 bp):
AAATACAATAAGT
Found at i:101746671 original size:27 final size:27
Alignment explanation
Indices: 101746598--101746684 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
101746588 ATGGAGGAAA
*
101746598 TCCTTTCATGATTA-GCC-CAAAAGCGT
1 TCCTTTCAT-ATTATGCCACAAAGGCGT
* ** *
101746624 TCCTTTCATATTGTGGTACAAAGGCTT
1 TCCTTTCATATTATGCCACAAAGGCGT
*
101746651 TCCTTTCATATTATGCCACAAAGTCGT
1 TCCTTTCATATTATGCCACAAAGGCGT
101746678 TCCTTTC
1 TCCTTTC
101746685 CTGACTTGTT
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
25 3 0.06
26 10 0.20
27 36 0.73
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (27 bp):
TCCTTTCATATTATGCCACAAAGGCGT
Found at i:101750093 original size:23 final size:23
Alignment explanation
Indices: 101750015--101750099 Score: 84
Period size: 23 Copynumber: 3.7 Consensus size: 23
101750005 ATGAAGCTAT
* *
101750015 CACCCTCCAATCACAATCGAT-TA
1 CACCCTCCAAACACAA-CCATATA
* *
101750038 TACCCTCCAAACACAACCAAATA
1 CACCCTCCAAACACAACCATATA
* *
101750061 -TCTCTACCAAACACAACCATATA
1 CACCCT-CCAAACACAACCATATA
101750084 CACCCTCCAAACACAA
1 CACCCTCCAAACACAA
101750100 ACAAGTATAG
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
22 5 0.10
23 42 0.84
24 3 0.06
ACGTcount: A:0.42, C:0.40, G:0.01, T:0.16
Consensus pattern (23 bp):
CACCCTCCAAACACAACCATATA
Found at i:101751577 original size:13 final size:13
Alignment explanation
Indices: 101751541--101751583 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
101751531 CCCGAACACC
*
101751541 TAATTTTAATTTCT
1 TAATTCTAATTT-T
101751555 TAA-TCTTAATTTT
1 TAATTC-TAATTTT
101751568 TAATTCTAATTTT
1 TAATTCTAATTTT
101751581 TAA
1 TAA
101751584 CATTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (13 bp):
TAATTCTAATTTT
Found at i:101755892 original size:40 final size:40
Alignment explanation
Indices: 101755847--101755936 Score: 119
Period size: 40 Copynumber: 2.2 Consensus size: 40
101755837 CGGAATACAA
* *
101755847 CCGGATATAACCACGT-GCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TCGCACGAATGCCTTCGGGTCTTAAC
* **
101755887 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTCGCACGAATGCCTTCGGGTCTTAAC
101755927 CCGGATATAA
1 CCGGATATAA
101755937 TTTCCAGCAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.02
40 42 0.98
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTCGCACGAATGCCTTCGGGTCTTAAC
Found at i:101761056 original size:28 final size:27
Alignment explanation
Indices: 101760988--101761102 Score: 152
Period size: 24 Copynumber: 4.4 Consensus size: 27
101760978 GATATGACAT
*
101760988 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
101761015 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
101761040 TGTGCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
101761067 --T-CTAAGTGAAATTAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
101761091 TTGTGCTAAGTG
1 -TGTGCTAAGTG
101761103 CGAAATTTCT
Statistics
Matches: 78, Mismatches: 2, Indels: 15
0.82 0.02 0.16
Matches are distributed among these distances:
24 43 0.55
25 3 0.04
27 3 0.04
28 29 0.37
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:101761057 original size:52 final size:52
Alignment explanation
Indices: 101760988--101761102 Score: 203
Period size: 52 Copynumber: 2.2 Consensus size: 52
101760978 GATATGACAT
101760988 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* * *
101761040 TGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATTAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
101761092 TGTGCTAAGTG
1 TGTGCTAAGTG
101761103 CGAAATTTCT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:101761251 original size:51 final size:51
Alignment explanation
Indices: 101761126--101761374 Score: 360
Period size: 51 Copynumber: 4.9 Consensus size: 51
101761116 TGAACCTTAG
* * * * *
101761126 GAATAAAATAGATTTGGACACAAGTGCGGTATTATGTGAAGGTCACTTT-T
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
101761176 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGTCACTTTAT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
101761227 GAATATAATATCTTTAGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
101761278 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
101761329 GAATAAAATAGCTTTGG-CTACAAG-GATGGAACTATGTGAAGGCCAC
1 GAATATAATAGCTTTGGAC-ACAAGTG-TGGTACTATGTGAAGGCCAC
101761375 CGTGTATCCG
Statistics
Matches: 184, Mismatches: 12, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
50 47 0.26
51 137 0.74
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.31
Consensus pattern (51 bp):
GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:101763102 original size:28 final size:27
Alignment explanation
Indices: 101763071--101763132 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
101763061 TCATTTACCG
*
101763071 TGTCCCATCGAACTTACCTCGTGTTTAC
1 TGTCCCATCGAA-TTACCTCGTGTGTAC
** *
101763099 TGTCTTGATGGAATTACCTCGTGTGTAC
1 TGTC-CCATCGAATTACCTCGTGTGTAC
101763127 TGTCCC
1 TGTCCC
101763133 CGCAGACTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
28 22 0.81
29 5 0.19
ACGTcount: A:0.16, C:0.27, G:0.19, T:0.37
Consensus pattern (27 bp):
TGTCCCATCGAATTACCTCGTGTGTAC
Found at i:101764994 original size:40 final size:40
Alignment explanation
Indices: 101764939--101765108 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
101764929 AACATTGGAA
101764939 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
101764979 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
101765019 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
101765058 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
101765099 CTATATCCGG
1 ATATATCCGG
101765109 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:101773089 original size:40 final size:40
Alignment explanation
Indices: 101773034--101773203 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
101773024 GAACATTGAA
101773034 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
101773074 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
101773114 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
101773153 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
101773194 CTATATCCGG
1 ATATATCCGG
101773204 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:101776305 original size:27 final size:28
Alignment explanation
Indices: 101776249--101776318 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
101776239 AAACTTGTAC
101776249 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
101776277 AGCACTAAGTGTGCGAG-TTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
101776304 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
101776319 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:101807047 original size:26 final size:26
Alignment explanation
Indices: 101807011--101807063 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
101807001 AGAAAACAAG
101807011 TACGATTAACTTTGTCCTTATTTATA
1 TACGATTAACTTTGTCCTTATTTATA
101807037 TACGATTAACTTTGTCCTTATTTATA
1 TACGATTAACTTTGTCCTTATTTATA
101807063 T
1 T
101807064 CAATGCGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.08, T:0.51
Consensus pattern (26 bp):
TACGATTAACTTTGTCCTTATTTATA
Found at i:101818310 original size:2 final size:2
Alignment explanation
Indices: 101818298--101818340 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
101818288 TTATATTAAG
101818298 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101818339 AT
1 AT
101818341 CATAAAGCAC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:101820796 original size:27 final size:27
Alignment explanation
Indices: 101820776--101820878 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
101820766 ATTACCAAAG
* *
101820776 TACCCCCGATTTATAGAATTACCGTTC
1 TACCCTCGATTTATAGAATTACCATTC
* *
101820803 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTC
*** *
101820830 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCATTC
* *
101820857 TACCCTCGATTTAAAAAATTAC
1 TACCCTCGATTTATAGAATTAC
101820879 TAAAATACCC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTC
Found at i:101820887 original size:27 final size:27
Alignment explanation
Indices: 101820803--101820987 Score: 149
Period size: 27 Copynumber: 6.8 Consensus size: 27
101820793 ATTACCGTTC
* ***
101820803 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * ****
101820830 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
101820857 TACCCTCGATTTAAAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
101820884 TACCC-CTGGTTTGTAAAGTTACTAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* *
101820911 TACCCCCTGATTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
101820939 TACCCTTGACTTGTA-AAAATTACCAAAG
1 TACCCTCGA-TT-TATAAAATTACTAAAA
101820967 TACCCTCGATTTATAAAATTA
1 TACCCTCGATTTATAAAATTA
101820988 TTGTTTTACC
Statistics
Matches: 130, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.02
27 80 0.62
28 46 0.35
29 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:101820888 original size:54 final size:54
Alignment explanation
Indices: 101820764--101820889 Score: 162
Period size: 54 Copynumber: 2.3 Consensus size: 54
101820754 TTAGTTTACC
* *
101820764 AAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTCTACCCTCGATTTATA
1 AAATTACCAAAATACCCCCGATTTATAGAATTACCGTTCTACCCTCGATTTAAA
*** * ** *
101820818 AAATTACCATTTTACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTAAA
1 AAATTACCAAAATACCCCCGATTTATAGAATTACCGTTCTACCCTCGATTTAAA
*
101820872 AAATTACTAAAATACCCC
1 AAATTACCAAAATACCCC
101820890 TGGTTTGTAA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (54 bp):
AAATTACCAAAATACCCCCGATTTATAGAATTACCGTTCTACCCTCGATTTAAA
Found at i:101820926 original size:28 final size:28
Alignment explanation
Indices: 101820871--101820987 Score: 132
Period size: 28 Copynumber: 4.2 Consensus size: 28
101820861 CTCGATTTAA
*
101820871 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
*
101820898 AAAGTTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
* *
101820926 AAAATTACTAAAATA-CCCTTGACTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
* * * *
101820953 AAAAATTACCAAAGTACCCTC-GATTTAT
1 -AAAATTACTAAAATACCCCCTGATTTGT
101820981 AAAATTA
1 AAAATTA
101820988 TTGTTTTACC
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
27 31 0.41
28 43 0.57
29 2 0.03
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:101820932 original size:55 final size:55
Alignment explanation
Indices: 101820857--101820987 Score: 156
Period size: 55 Copynumber: 2.4 Consensus size: 55
101820847 ATTATTGTTT
* * ** * *
101820857 TACCCTCGATTTAAAAAATTACTAAAATACCCCTGGTTTGT-AAAGTTACTAAAA
1 TACCCCCGATTTATAAAATTACTAAAATACCCCTGACTTGTAAAAATTACCAAAA
* * *
101820911 TACCCCCTGATTTGTAAAATTACTAAAATACCCTTGACTTGTAAAAATTACCAAAG
1 TACCCCC-GATTTATAAAATTACTAAAATACCCCTGACTTGTAAAAATTACCAAAA
*
101820967 TACCCTCGATTTATAAAATTA
1 TACCCCCGATTTATAAAATTA
101820988 TTGTTTTACC
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
54 6 0.09
55 42 0.66
56 16 0.25
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (55 bp):
TACCCCCGATTTATAAAATTACTAAAATACCCCTGACTTGTAAAAATTACCAAAA
Found at i:101820997 original size:27 final size:27
Alignment explanation
Indices: 101820967--101821058 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
101820957 ATTACCAAAG
*
101820967 TACCCTCGATTTATAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTATTGTTT
*
101820994 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTATTGTTT
* * ***
101821021 TACCCTTGATTTGCAAAATTACCATTT
1 TACCCTCGATTTACAAAATTATTGTTT
101821048 TACCCTCGATT
1 TACCCTCGATT
101821059 ATGAAATTAC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATTGTTT
Found at i:101821052 original size:137 final size:135
Alignment explanation
Indices: 101820830--101821080 Score: 306
Period size: 137 Copynumber: 1.8 Consensus size: 135
101820820 ATTACCATTT
* *
101820830 TACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTAAAAAATTACTAAAATACCCCTGGTT
1 TACCCTCGATTTATAAAATTATTGTTTTACCCTCGATTTAAAAAATTACTAAAATACCCCTGATT
* * *
101820895 TGTAAAGTTACTAAAATACCCCCTGATT-TGTAAAATTACTAAAATACCCTTGACTTGTAAAAAT
66 TGCAAAATTACCAAAATACCCCC-GATTATG--AAATTACTAAAATACCCTTGACTTGTAAAAAT
101820959 TACCAAAG
128 TACCAAAG
* * * **** *
101820967 TACCCTCGATTTATAAAATTATTGTTTTACCCTCGATTTACAGAATTATTGTTTTACCCTTGATT
1 TACCCTCGATTTATAAAATTATTGTTTTACCCTCGATTTAAAAAATTACTAAAATACCCCTGATT
*** * *
101821032 TGCAAAATTACCATTTTACCCTCGATTATGAAATTACTGAAATACCCTT
66 TGCAAAATTACCAAAATACCCCCGATTATGAAATTACTAAAATACCCTT
101821081 ATAGGGTAGA
Statistics
Matches: 95, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
135 18 0.19
136 4 0.04
137 73 0.77
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (135 bp):
TACCCTCGATTTATAAAATTATTGTTTTACCCTCGATTTAAAAAATTACTAAAATACCCCTGATT
TGCAAAATTACCAAAATACCCCCGATTATGAAATTACTAAAATACCCTTGACTTGTAAAAATTAC
CAAAG
Found at i:101821193 original size:27 final size:27
Alignment explanation
Indices: 101821090--101821240 Score: 110
Period size: 27 Copynumber: 5.6 Consensus size: 27
101821080 TATAGGGTAG
101821090 AATTACCAAAACACCCCT-AGTTTGTAA
1 AATTACCAAAACACCCCTGA-TTTGTAA
* * * * *
101821117 AATTGCCAAAATACCACTGGTTTGTGA
1 AATTACCAAAACACCCCTGATTTGTAA
* * *
101821144 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAACACCCCT-GATTTGTAA
**
101821171 AATTACCAAAACACCCCTGATTTACAA
1 AATTACCAAAACACCCCTGATTTGTAA
* * ** *
101821198 AATTA-TAGAAATACCTTTGATTTGTAG
1 AATTACCA-AAACACCCCTGATTTGTAA
*
101821225 ATTTACCAAAACACCC
1 AATTACCAAAACACCC
101821241 TTGTAGGATG
Statistics
Matches: 92, Mismatches: 27, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
26 4 0.04
27 83 0.90
28 5 0.05
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTACCAAAACACCCCTGATTTGTAA
Found at i:101821201 original size:54 final size:54
Alignment explanation
Indices: 101821110--101821240 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 54
101821100 ACACCCCTAG
* * * * *** *
101821110 TTTGTAAAATTGCCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAACACCCCTGATTTACAAAATTACAGAAATACCCTCAA
* * **
101821164 TTTGTAAAATTACCAAAACACCCCTGATTTACAAAATTATAGAAATACCTTTGA
1 TTTGTAAAATTACCAAAACACCCCTGATTTACAAAATTACAGAAATACCCTCAA
* *
101821218 TTTGTAGATTTACCAAAACACCC
1 TTTGTAAAATTACCAAAACACCC
101821241 TTGTAGGATG
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAACACCCCTGATTTACAAAATTACAGAAATACCCTCAA
Found at i:101821312 original size:27 final size:27
Alignment explanation
Indices: 101821282--101821333 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
101821272 TAGGTAAAAA
101821282 GACCGTAA-AGCCCTTGTAGGGTAAAGT
1 GACCGTAATA-CCCTTGTAGGGTAAAGT
*
101821309 GACCGTAATACCCTTGTATGGTAAA
1 GACCGTAATACCCTTGTAGGGTAAA
101821334 ATGATGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (27 bp):
GACCGTAATACCCTTGTAGGGTAAAGT
Found at i:101822183 original size:52 final size:50
Alignment explanation
Indices: 101822121--101822256 Score: 206
Period size: 52 Copynumber: 2.7 Consensus size: 50
101822111 GAGGAAGTGC
101822121 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCC-AGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
101822173 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATG-CCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
101822224 AAAAGGGCTT-TGTCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATG-CCCAGTTTATTGAAAAG-GGCT
101822257 AGGCCTCTAG
Statistics
Matches: 81, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 7 0.09
51 25 0.31
52 32 0.40
53 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:101822218 original size:25 final size:26
Alignment explanation
Indices: 101822121--101822256 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
101822111 GAGGAAGTGC
*
101822121 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
101822147 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
101822173 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
101822199 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
101822224 AAAAGGGCTT-TGTCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
101822247 AAAAGAGGCT
1 AAAAG-GGCT
101822257 AGGCCTCTAG
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 30 0.30
26 57 0.58
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:101822448 original size:42 final size:42
Alignment explanation
Indices: 101822389--101822482 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
101822379 TGGTCTCCCC
* * ** *
101822389 AAATGGGTTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
101822431 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
101822473 AAATGGGCTT
1 AAATGGGCTT
101822483 ATGGGCCATA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:101822539 original size:31 final size:31
Alignment explanation
Indices: 101822504--101822582 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
101822494 CGTTTACAGT
101822504 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
101822535 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
101822566 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
101822583 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:101827406 original size:27 final size:27
Alignment explanation
Indices: 101827309--101827419 Score: 89
Period size: 27 Copynumber: 4.1 Consensus size: 27
101827299 AGGTTATCCC
* *
101827309 TTCATGATT-CGCCACAAAGGCATTCCT
1 TTCAT-ATTACGCCACATAGGCGTTCCT
* * * *
101827336 TTCACATTGCACCGCATAGGCGTTCCT
1 TTCATATTACGCCACATAGGCGTTCCT
** * *
101827363 TTCATATTGTGCGACATAGGTGTTCCT
1 TTCATATTACGCCACATAGGCGTTCCT
* * *
101827390 TTTATATTACGCCACATAGGCATTCTT
1 TTCATATTACGCCACATAGGCGTTCCT
101827417 TTC
1 TTC
101827420 TTGATGTGTT
Statistics
Matches: 64, Mismatches: 19, Indels: 2
0.75 0.22 0.02
Matches are distributed among these distances:
26 3 0.05
27 61 0.95
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (27 bp):
TTCATATTACGCCACATAGGCGTTCCT
Found at i:101832200 original size:13 final size:14
Alignment explanation
Indices: 101832182--101832212 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
101832172 TAGTAATAAT
101832182 TAAATAACT-AAAA
1 TAAATAACTGAAAA
101832195 TAAATAACTGAAAA
1 TAAATAACTGAAAA
101832209 TAAA
1 TAAA
101832213 ACACAAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (14 bp):
TAAATAACTGAAAA
Found at i:101836101 original size:21 final size:21
Alignment explanation
Indices: 101836077--101836119 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
101836067 AAGAAAGCCC
101836077 TCAATATAAATAACAATGGTT
1 TCAATATAAATAACAATGGTT
101836098 TCAATATAAATAACAATGGTT
1 TCAATATAAATAACAATGGTT
101836119 T
1 T
101836120 TAATGGAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (21 bp):
TCAATATAAATAACAATGGTT
Found at i:101843002 original size:40 final size:39
Alignment explanation
Indices: 101842837--101843020 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
101842827 AAATTGATTG
* * *
101842837 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
101842877 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
101842917 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
101842957 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
101842996 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
101843021 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:101843045 original size:80 final size:81
Alignment explanation
Indices: 101842877--101843065 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
101842867 GCTGGAAATT
* * * *
101842877 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
101842942 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
101842958 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
101843021 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
101843037 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
101843066 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:101844478 original size:11 final size:11
Alignment explanation
Indices: 101844462--101844490 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
101844452 AGGGAATAAA
101844462 GAGAGAAAAGT
1 GAGAGAAAAGT
101844473 GAGAGAAAAGT
1 GAGAGAAAAGT
101844484 GA-AGAAA
1 GAGAGAAA
101844491 TGAATGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.59, C:0.00, G:0.34, T:0.07
Consensus pattern (11 bp):
GAGAGAAAAGT
Found at i:101848127 original size:6 final size:6
Alignment explanation
Indices: 101848116--101848145 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
101848106 AGAGCCATAC
101848116 TAGTAA TAGTAA TAGTAA TAGTAA TTAGTA
1 TAGTAA TAGTAA TAGTAA TAGTAA -TAGTA
101848146 TATTGTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (6 bp):
TAGTAA
Found at i:101848523 original size:10 final size:10
Alignment explanation
Indices: 101848482--101848514 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
101848472 AGCCTCTCCC
101848482 CCATCCAAAT
1 CCATCCAAAT
*
101848492 CCATCCGAAT
1 CCATCCAAAT
101848502 CCATCCAAAT
1 CCATCCAAAT
101848512 CCA
1 CCA
101848515 AATCCATCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.36, C:0.42, G:0.03, T:0.18
Consensus pattern (10 bp):
CCATCCAAAT
Found at i:101872468 original size:21 final size:21
Alignment explanation
Indices: 101872444--101872505 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
101872434 TAAAAAATTA
*
101872444 TGTATCAAAATGGTACATTTT
1 TGTATTAAAATGGTACATTTT
* *
101872465 TGTATTAAAAT-GAAAATTTT
1 TGTATTAAAATGGTACATTTT
*
101872485 TAT-TTAAAATGGTACATTTT
1 TGTATTAAAATGGTACATTTT
101872505 T
1 T
101872506 TAAAGTAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 7 0.21
20 17 0.50
21 10 0.29
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (21 bp):
TGTATTAAAATGGTACATTTT
Found at i:101872507 original size:21 final size:20
Alignment explanation
Indices: 101872450--101872507 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 20
101872440 ATTATGTATC
101872450 AAAATGGTACATTTTTGTATT
1 AAAATGGTACATTTTT-TATT
* *
101872471 AAAAT-G-AAAATTTTTATTT
1 AAAATGGTACATTTTTTA-TT
101872490 AAAATGGTACATTTTTTA
1 AAAATGGTACATTTTTTA
101872508 AAGTAAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
18 2 0.07
19 13 0.43
20 2 0.07
21 13 0.43
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (20 bp):
AAAATGGTACATTTTTTATT
Found at i:101874598 original size:13 final size:13
Alignment explanation
Indices: 101874582--101874606 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101874572 TATATAAATT
101874582 TTAAAAGTAAAAG
1 TTAAAAGTAAAAG
101874595 TTAAAAGTAAAA
1 TTAAAAGTAAAA
101874607 TTGAGAGAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
TTAAAAGTAAAAG
Found at i:101881553 original size:5 final size:5
Alignment explanation
Indices: 101881539--101881578 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
101881529 AATTAAAGAG
* * *
101881539 AATAA AATAA TATAA AATAA AATAA TATAA AATAG AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
101881579 TAACCCAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (5 bp):
AATAA
Found at i:101881557 original size:15 final size:15
Alignment explanation
Indices: 101881539--101881580 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
101881529 AATTAAAGAG
101881539 AATAAAATAATATAA
1 AATAAAATAATATAA
101881554 AATAAAATAATATAA
1 AATAAAATAATATAA
*
101881569 AATAGAATAATA
1 AATAAAATAATA
101881581 ACCCAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (15 bp):
AATAAAATAATATAA
Found at i:101885951 original size:56 final size:56
Alignment explanation
Indices: 101885865--101885979 Score: 185
Period size: 56 Copynumber: 2.1 Consensus size: 56
101885855 GGGCTTTTTC
* * * *
101885865 CATTTAACATAACTTGTATAGGAGACAAGTGTAAGGCATGAATGACTTAATCATAT
1 CATTTAACATAACTTGTACAGAAGAAAAGTGCAAGGCATGAATGACTTAATCATAT
*
101885921 CATTTAACATAGCTTGTACAGAAGAAAAGTGCAAGGCATGAATGACTTAATCATAT
1 CATTTAACATAACTTGTACAGAAGAAAAGTGCAAGGCATGAATGACTTAATCATAT
101885977 CAT
1 CAT
101885980 GATGTTCTAG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (56 bp):
CATTTAACATAACTTGTACAGAAGAAAAGTGCAAGGCATGAATGACTTAATCATAT
Found at i:101887491 original size:122 final size:121
Alignment explanation
Indices: 101887327--101887556 Score: 388
Period size: 122 Copynumber: 1.9 Consensus size: 121
101887317 GTGGCATAAC
* * * *
101887327 CTATATGTTAATGTATATTTTACTATATATATCATGCTTTAAGATTCACTCATTACTTTTCTATC
1 CTATATGCTAATGTATATTTTACCATATATATCATGCGTTAAGATTCACTCATTACTTTTCCATC
101887392 CATTAATATTCAATACAATAATCATCACCATTTAAAATGTGTAAAACCCATGGAAAT
66 CATTAATATTCAATACAATAATCATCACCATTT-AAATGTGTAAAACCCATGGAAAT
* * *
101887449 CTATATGCTAATGTATATTTTACCATATATATTATGGGTTAAGATTTACTCATTACTTTTCCATC
1 CTATATGCTAATGTATATTTTACCATATATATCATGCGTTAAGATTCACTCATTACTTTTCCATC
101887514 CATTAATATTCAATACAATAATCATCACCATTTAAATGTGTAA
66 CATTAATATTCAATACAATAATCATCACCATTTAAATGTGTAA
101887557 TATCATGGGT
Statistics
Matches: 101, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
121 10 0.10
122 91 0.90
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.41
Consensus pattern (121 bp):
CTATATGCTAATGTATATTTTACCATATATATCATGCGTTAAGATTCACTCATTACTTTTCCATC
CATTAATATTCAATACAATAATCATCACCATTTAAATGTGTAAAACCCATGGAAAT
Found at i:101887613 original size:79 final size:79
Alignment explanation
Indices: 101887477--101887635 Score: 300
Period size: 79 Copynumber: 2.0 Consensus size: 79
101887467 TTTACCATAT
* *
101887477 ATATTATGGGTTAAGATTTACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
1 ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
101887542 CATTTAAATGTGTA
66 CATTTAAATGTGTA
101887556 ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
1 ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
101887621 CATTTAAATGTGTA
66 CATTTAAATGTGTA
101887635 A
1 A
101887636 GACCCATGGA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.39
Consensus pattern (79 bp):
ATATCATGGGTTAAGATTCACTCATTACTTTTCCATCCATTAATATTCAATACAATAATCATCAC
CATTTAAATGTGTA
Found at i:101891168 original size:24 final size:24
Alignment explanation
Indices: 101891139--101891206 Score: 127
Period size: 24 Copynumber: 2.8 Consensus size: 24
101891129 GCTAATAATA
101891139 GTAAGCTTTATTGAGCTGAAAACG
1 GTAAGCTTTATTGAGCTGAAAACG
101891163 GTAAGCTTTATTGAGCTGAAAACG
1 GTAAGCTTTATTGAGCTGAAAACG
*
101891187 GTAAGCTCTATTGAGCTGAA
1 GTAAGCTTTATTGAGCTGAA
101891207 CAATAAGCTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (24 bp):
GTAAGCTTTATTGAGCTGAAAACG
Found at i:101891239 original size:23 final size:22
Alignment explanation
Indices: 101891138--101891272 Score: 85
Period size: 24 Copynumber: 5.8 Consensus size: 22
101891128 GGCTAATAAT
* *
101891138 AGTAAGCTTTATTGAGCTGAAAAC
1 AGTAAGCTCT-TTGAGCT-AAATC
* * *
101891162 GGTAAGCTTTATTGAGCTGAAAAC
1 AGTAAGCTCT-TTGAGCT-AAATC
* *
101891186 GGTAAGCTCTATTGAGCTGAA-C
1 AGTAAGCTCT-TTGAGCTAAATC
*
101891208 AATAAGCTCTTTCGAGCTAAATC
1 AGTAAGCTCTTT-GAGCTAAATC
**
101891231 AGTAAGCTCCAATGAGCTGAAAT-
1 AGTAAGCT-CTTTGAGCT-AAATC
101891254 AGTAAGCTCTTATGAGCTA
1 AGTAAGCTCTT-TGAGCTA
101891273 TGGTGAGTCC
Statistics
Matches: 95, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
21 2 0.02
22 18 0.19
23 29 0.31
24 46 0.48
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.28
Consensus pattern (22 bp):
AGTAAGCTCTTTGAGCTAAATC
Found at i:101898479 original size:24 final size:24
Alignment explanation
Indices: 101898447--101898492 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
101898437 GCTAATAACA
101898447 GTAAGCTCTATTAAACTGAATACG
1 GTAAGCTCTATTAAACTGAATACG
* *
101898471 GTAAGCTCTATTGAGCTGAATA
1 GTAAGCTCTATTAAACTGAATA
101898493 GTAATCTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (24 bp):
GTAAGCTCTATTAAACTGAATACG
Found at i:101898524 original size:23 final size:23
Alignment explanation
Indices: 101898445--101898570 Score: 139
Period size: 23 Copynumber: 5.5 Consensus size: 23
101898435 GAGCTAATAA
* *
101898445 CAGTAAGCTCTATTAAACTGAAT
1 CAGTAAGCTCTATTGAGCTGAAT
*
101898468 ACGGTAAGCTCTATTGAGCTGAAT
1 -CAGTAAGCTCTATTGAGCTGAAT
*
101898492 -AGTAATCTCT-TTCGAGCTGAAT
1 CAGTAAGCTCTATT-GAGCTGAAT
*
101898514 CAGTAAGCTCTAATGAGCTGAAT
1 CAGTAAGCTCTATTGAGCTGAAT
* * * *
101898537 CAGTAGGCTCCAATGAGCTGAAA
1 CAGTAAGCTCTATTGAGCTGAAT
101898560 CAGTAAGCTCT
1 CAGTAAGCTCT
101898571 TACGAGCTAT
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.02
22 17 0.20
23 47 0.54
24 21 0.24
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (23 bp):
CAGTAAGCTCTATTGAGCTGAAT
Found at i:101898524 original size:69 final size:69
Alignment explanation
Indices: 101898423--101898578 Score: 163
Period size: 69 Copynumber: 2.2 Consensus size: 69
101898413 ACATGGTGGA
* * * * *
101898423 TAAGCTCTTCATGAGCT-AATAACAGTAAGCTCTATTAAACTGAATACGGTAAGCTCTATTGAGC
1 TAAGCTCTT-ACGAGCTGAAT--CAGTAAGCTCTAATAAACTGAAT-CAGTAAGCTCCAATGAGC
*
101898487 TG-AATAG
62 TGAAACAG
* * * * *
101898494 TAATCTCTTTCGAGCTGAATCAGTAAGCTCTAATGAGCTGAATCAGTAGGCTCCAATGAGCTGAA
1 TAAGCTCTTACGAGCTGAATCAGTAAGCTCTAATAAACTGAATCAGTAAGCTCCAATGAGCTGAA
101898559 ACAG
66 ACAG
101898563 TAAGCTCTTACGAGCT
1 TAAGCTCTTACGAGCT
101898579 ATGGTGAGTC
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
68 16 0.23
69 38 0.54
70 5 0.07
71 11 0.16
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (69 bp):
TAAGCTCTTACGAGCTGAATCAGTAAGCTCTAATAAACTGAATCAGTAAGCTCCAATGAGCTGAA
ACAG
Found at i:101898577 original size:23 final size:23
Alignment explanation
Indices: 101898423--101898578 Score: 113
Period size: 23 Copynumber: 6.7 Consensus size: 23
101898413 ACATGGTGGA
*
101898423 TAAGCTCTTCATGAGCTAATAACAG
1 TAAGCTCTT-ATGAGCTGA-AACAG
* * *
101898448 TAAGCTC-TATTAAACTGAATACGG
1 TAAGCTCTTA-TGAGCTGAA-ACAG
*
101898472 TAAGCTC-TATTGAGCTG-AATAG
1 TAAGCTCTTA-TGAGCTGAAACAG
* *
101898494 TAATCTCTT-TCGAGCTGAATCAG
1 TAAGCTCTTAT-GAGCTGAAACAG
* *
101898517 TAAGCTCTAATGAGCTGAATCAG
1 TAAGCTCTTATGAGCTGAAACAG
* **
101898540 TAGGCTCCAATGAGCTGAAACAG
1 TAAGCTCTTATGAGCTGAAACAG
*
101898563 TAAGCTCTTACGAGCT
1 TAAGCTCTTATGAGCT
101898579 ATGGTGAGTC
Statistics
Matches: 105, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
21 1 0.01
22 14 0.13
23 58 0.55
24 25 0.24
25 7 0.07
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (23 bp):
TAAGCTCTTATGAGCTGAAACAG
Found at i:101907688 original size:96 final size:96
Alignment explanation
Indices: 101907524--101907704 Score: 335
Period size: 96 Copynumber: 1.9 Consensus size: 96
101907514 GAAAACTAAC
* *
101907524 ATAAAATCAAGAAAAATAGAACACATAATACTATGTGCAACCTCACATTTAGACTACACATTTTC
1 ATAAAAGCAAGAAAAATAGAACACATAATACTATGTGCAACCTCACACTTAGACTACACATTTTC
101907589 CCCAATGTGTCCCAAGAAAATAAAAATAAAA
66 CCCAATGTGTCCCAAGAAAATAAAAATAAAA
*
101907620 ATAAAAGCAAGAAAAATAGAACACATAATACTATGTGCACCCTCACACTTAGACTACACATTTTC
1 ATAAAAGCAAGAAAAATAGAACACATAATACTATGTGCAACCTCACACTTAGACTACACATTTTC
101907685 CCCAATGTGTCCCAAGAAAA
66 CCCAATGTGTCCCAAGAAAA
101907705 AAGATTGGAG
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 82 1.00
ACGTcount: A:0.46, C:0.22, G:0.09, T:0.22
Consensus pattern (96 bp):
ATAAAAGCAAGAAAAATAGAACACATAATACTATGTGCAACCTCACACTTAGACTACACATTTTC
CCCAATGTGTCCCAAGAAAATAAAAATAAAA
Found at i:101913335 original size:58 final size:59
Alignment explanation
Indices: 101913258--101913370 Score: 160
Period size: 58 Copynumber: 1.9 Consensus size: 59
101913248 TATGACACCC
* * *
101913258 TGTTAGAGGGGTCTAGATCTCAA-ATTTAGGGGATAAGA-ATTTTTTTTTTAAGTTTACCA
1 TGTTAGAGGGGTCTAGATCT-AAGATCTAGGGGAGAAGAGA-TTTTTGTTTAAGTTTACCA
101913317 TGTT-GAGGGGTCTAGATCTAAGATCTAGGGGAGAAGAGATTTTTGTTTAAGTTT
1 TGTTAGAGGGGTCTAGATCTAAGATCTAGGGGAGAAGAGATTTTTGTTTAAGTTT
101913371 TCTCATAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
57 2 0.04
58 42 0.86
59 5 0.10
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.39
Consensus pattern (59 bp):
TGTTAGAGGGGTCTAGATCTAAGATCTAGGGGAGAAGAGATTTTTGTTTAAGTTTACCA
Found at i:101919873 original size:39 final size:39
Alignment explanation
Indices: 101919827--101919989 Score: 265
Period size: 39 Copynumber: 4.2 Consensus size: 39
101919817 GCTCTGATGA
*
101919827 GCTTCAGTTAGCCTTCGAGCTTCCGATTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
* *
101919866 GCTTCAGTTAGCCTTCGGGATTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
*
101919905 GCTTCAGCTAGCCTTC-AGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGA-GCTTCCGTTTAGCACTTATGT
*
101919944 GCTTTAGTTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
101919983 GCTTCAG
1 GCTTCAG
101919990 CTAGACTTTG
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 112 0.99
40 1 0.01
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
Found at i:101926255 original size:30 final size:30
Alignment explanation
Indices: 101926219--101926349 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
101926209 GACAAGATTG
* * * * *
101926219 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
101926249 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
101926277 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
101926307 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
101926336 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
101926350 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:101926310 original size:58 final size:58
Alignment explanation
Indices: 101926219--101926349 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
101926209 GACAAGATTG
* * * * * *
101926219 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
101926277 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
101926336 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
101926350 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:101931649 original size:20 final size:20
Alignment explanation
Indices: 101931624--101931664 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
101931614 AAAGAGAGAA
101931624 ACCATTGAACCCCAAGGACT
1 ACCATTGAACCCCAAGGACT
101931644 ACCATTGAACCCCAAGGACT
1 ACCATTGAACCCCAAGGACT
101931664 A
1 A
101931665 TGTCACAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.34, G:0.15, T:0.15
Consensus pattern (20 bp):
ACCATTGAACCCCAAGGACT
Found at i:101933337 original size:48 final size:47
Alignment explanation
Indices: 101933117--101933381 Score: 229
Period size: 47 Copynumber: 5.6 Consensus size: 47
101933107 GATATATTGC
* **
101933117 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAATATGCGTA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTATGCGTA
* * * *
101933166 CTGATGCATGTCCCAGACATGCCTTACACTAGCAC-AACTCT-T-AGT-
1 C-GATGCATGTCCCAGACATGTCTTACACTGGCACTCA-TCTATGCGTA
* * * *
101933211 CGATGCGTGTCCCAGACACGTCTTACACTGGCTA-TC-TCTATTGAGTC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCTA-TGCGTA
* * * *
101933258 CGATGCATGTCCCAGAAATGTCTTACTCTGGCACTCATCTCTGTGT-
1 CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTATGCGTA
* * *
101933304 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTTATGCGTG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTATGCGTA
*
101933353 CTGATGCATCTCCCAGACATGTCTTACAC
1 C-GATGCATGTCCCAGACATGTCTTACAC
101933382 AATCATAACT
Statistics
Matches: 177, Mismatches: 25, Indels: 29
0.77 0.11 0.13
Matches are distributed among these distances:
43 3 0.02
44 27 0.15
45 3 0.02
46 11 0.06
47 49 0.28
48 47 0.27
49 29 0.16
50 8 0.05
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTATGCGTA
Found at i:101934163 original size:12 final size:12
Alignment explanation
Indices: 101934146--101934170 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
101934136 TAAAAATGTA
101934146 AAAATCATCAAG
1 AAAATCATCAAG
101934158 AAAATCATCAAG
1 AAAATCATCAAG
101934170 A
1 A
101934171 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:101940911 original size:48 final size:44
Alignment explanation
Indices: 101940688--101941003 Score: 210
Period size: 44 Copynumber: 6.8 Consensus size: 44
101940678 TGGGATATAT
* *
101940688 TGCCGATGCCATGTCCCATACATGGTCTTACACTGGCTC-TCATATA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATC-TCTA
* * * *
101940734 TGCGTGCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTGT-
1 TGC---C-GATGCATGTCCCAGACATGTCTTACACTGGCTCATCTCTA
* * * *
101940781 TAGCCGATGCGTGTCCTAAACACGTCTTACACTGGCT-ATCTCTA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCATCTCTA
* *
101940825 TTGAGGCCGATGCATGTCCCAGAGATGTCTTACTCTGGCATTCATCTCTA
1 -T---GCCGATGCATGTCCCAGACATGTCTTACACTGGC--TCATCTCTA
*
101940875 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATTTA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATC-TCTA
* * * * *
101940921 TGCATGCTGATACATGTCCCAGACATGTCTTACAGTAGCACAACTCT-
1 TGC---C-GATGCATGTCCCAGACATGTCTTACACTGGCTCATCTCTA
* * *
101940968 TAGTCGATGCGTGTCCCAGACACGTCTTACACTGGC
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGC
101941004 GCACAAATCA
Statistics
Matches: 213, Mismatches: 35, Indels: 46
0.72 0.12 0.16
Matches are distributed among these distances:
43 4 0.02
44 52 0.24
45 5 0.02
46 18 0.08
47 43 0.20
48 44 0.21
49 33 0.15
50 14 0.07
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (44 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCATCTCTA
Found at i:101941705 original size:12 final size:12
Alignment explanation
Indices: 101941688--101941712 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
101941678 TAAAAATGTA
101941688 AAAATCATCAAG
1 AAAATCATCAAG
101941700 AAAATCATCAAG
1 AAAATCATCAAG
101941712 A
1 A
101941713 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:101946658 original size:29 final size:31
Alignment explanation
Indices: 101946615--101946695 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 31
101946605 GAATTGAATC
*
101946615 AAATAAAAATTTCATATATAAAATT-ACA-TA
1 AAAT-AAAAGTTCATATATAAAATTAACATTA
* *
101946645 AAATAAAAGTTCATGTATAAATTTACACATTA
1 AAATAAAAGTTCATATATAAAATTA-ACATTA
*
101946677 AAAT-AAAGTTTATATATAA
1 AAATAAAAGTTCATATATAA
101946696 TTTTAAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 17 0.40
30 4 0.09
31 16 0.37
32 6 0.14
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.35
Consensus pattern (31 bp):
AAATAAAAGTTCATATATAAAATTAACATTA
Found at i:101946695 original size:31 final size:30
Alignment explanation
Indices: 101946615--101946701 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 30
101946605 GAATTGAATC
* *
101946615 AAATAAAAATTTCATATATAAAATT-ACATA
1 AAAT-AAAAGTTCATATATAAATTTAACATA
*
101946645 AAATAAAAGTTCATGTATAAATTTACACATTA
1 AAATAAAAGTTCATATATAAATTTA-ACA-TA
* *
101946677 AAAT-AAAGTTTATATATAATTTTAA
1 AAATAAAAGTTCATATATAAATTTAA
101946702 AATTTATCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
29 17 0.35
30 5 0.10
31 20 0.42
32 6 0.12
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (30 bp):
AAATAAAAGTTCATATATAAATTTAACATA
Found at i:101947022 original size:13 final size:15
Alignment explanation
Indices: 101946998--101947029 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
101946988 ACGAAATAGT
101946998 TATTTAAAAATG-TA
1 TATTTAAAAATGATA
101947012 TATTT-AAAATGATA
1 TATTTAAAAATGATA
101947026 TATT
1 TATT
101947030 AAATTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (15 bp):
TATTTAAAAATGATA
Found at i:101949041 original size:11 final size:11
Alignment explanation
Indices: 101949022--101949056 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
101949012 CCCCTTCCCC
101949022 CTCCCTTCTCT
1 CTCCCTTCTCT
101949033 CTCCCTTCTCT
1 CTCCCTTCTCT
101949044 CTTCCC-TCTCT
1 C-TCCCTTCTCT
101949055 CT
1 CT
101949057 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:101949769 original size:2 final size:2
Alignment explanation
Indices: 101949758--101949790 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
101949748 TCCTAACACC
101949758 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101949791 GTATGTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:101950032 original size:24 final size:24
Alignment explanation
Indices: 101949995--101950102 Score: 73
Period size: 24 Copynumber: 4.4 Consensus size: 24
101949985 GTATATATTG
*
101949995 TATATGTTTTATA-TATGTTATGTA
1 TATAT-TTTTATACCATGTTATGTA
**
101950019 TATATTTTTAATATTACTAGTTA--TA
1 TATATTTTT-ATACCA-T-GTTATGTA
101950044 TATATTTCTTATA-CAT-TTCCATGTA
1 TATATTT-TTATACCATGTT--ATGTA
* *
101950069 CATATTTTTATACCATCTTATGTA
1 TATATTTTTATACCATGTTATGTA
101950093 TATATTTTTA
1 TATATTTTTA
101950103 AATACTATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 22
0.74 0.03 0.23
Matches are distributed among these distances:
21 2 0.03
23 6 0.09
24 28 0.40
25 25 0.36
26 5 0.07
27 4 0.06
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.56
Consensus pattern (24 bp):
TATATTTTTATACCATGTTATGTA
Found at i:101950123 original size:30 final size:31
Alignment explanation
Indices: 101950087--101950144 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
101950077 TATACCATCT
101950087 TATGTATATAT-TT-TTAAATACTATATTGTA
1 TATGTATATATATTCTT-AATACTATATTGTA
*
101950117 TATGTATATATATTCTTAGTACTATATT
1 TATGTATATATATTCTTAATACTATATT
101950145 ACGTATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 11 0.44
31 12 0.48
32 2 0.08
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.53
Consensus pattern (31 bp):
TATGTATATATATTCTTAATACTATATTGTA
Found at i:101951126 original size:64 final size:64
Alignment explanation
Indices: 101951053--101951263 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
101951043 CTGGGCCAGA
*
101951053 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
101951117 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
101951179 ACTGGGCCAGA-
54 A-TGGCCCATAG
* *
101951190 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCATTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
101951254 GCCCATTTCA
1 GCCCATTTCA
101951264 AAATACATGC
Statistics
Matches: 102, Mismatches: 28, Indels: 34
0.62 0.17 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.25
65 4 0.04
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:101951265 original size:137 final size:137
Alignment explanation
Indices: 101951031--101951305 Score: 532
Period size: 137 Copynumber: 2.0 Consensus size: 137
101951021 GCCCATTCAA
*
101951031 GTAACAGCGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTC
1 GTAACAGCGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCATTATTC
101951096 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
101951161 CATTTGG
131 CATTTGG
*
101951168 GTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCATTATTC
1 GTAACAGCGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCATTATTC
101951233 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
66 AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
101951298 CATTTGG
131 CATTTGG
101951305 G
1 G
101951306 GAGACTACTC
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 136 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
GTAACAGCGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCATTATTC
AGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCC
CATTTGG
Found at i:101951582 original size:26 final size:26
Alignment explanation
Indices: 101951553--101951605 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
101951543 TCAAACATGC
101951553 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
101951579 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
101951605 A
1 A
101951606 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:101952247 original size:11 final size:11
Alignment explanation
Indices: 101952231--101952255 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
101952221 CCAAATCAAG
101952231 TTTCGTTAATT
1 TTTCGTTAATT
101952242 TTTCGTTAATT
1 TTTCGTTAATT
101952253 TTT
1 TTT
101952256 GGTTTAGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTCGTTAATT
Found at i:101953088 original size:26 final size:26
Alignment explanation
Indices: 101953050--101953133 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
101953040 CATGAAATTC
* *
101953050 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
101953076 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
101953102 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
101953128 TTATCA
1 TTATCA
101953134 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:101955079 original size:29 final size:29
Alignment explanation
Indices: 101955036--101955115 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 29
101955026 CTTAATAATC
* *
101955036 AACCACGCGCACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
101955066 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
101955095 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
101955116 TCTCTCAACC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:101960188 original size:137 final size:136
Alignment explanation
Indices: 101959943--101960228 Score: 527
Period size: 137 Copynumber: 2.1 Consensus size: 136
101959933 TATTGGGCCT
**
101959943 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGACCCTTTTCAGATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGACCCTTTTCAGATTACAATAAACTGGGCCTTA
*
101960008 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
66 ACCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
101960073 ATATGC
131 ATATGC
101960079 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGA-CCCTTTTCAGATTACAATAAACTGGGCCTT
*
101960144 AACCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATTAGTAAA
65 AACCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
101960209 CATATGC
130 CATATGC
101960216 AAGCCCATTTGGG
1 AAGCCCATTTGGG
101960229 GAGACTACTC
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 32 0.22
137 113 0.78
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGACCCTTTTCAGATTACAATAAACTGGGCCTTA
ACCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
ATATGC
Found at i:101960505 original size:26 final size:26
Alignment explanation
Indices: 101960476--101960528 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
101960466 TCAAACATGC
101960476 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
101960502 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
101960528 A
1 A
101960529 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:101962051 original size:26 final size:26
Alignment explanation
Indices: 101962015--101962125 Score: 177
Period size: 26 Copynumber: 4.3 Consensus size: 26
101962005 CATGAAATTC
101962015 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
101962041 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
101962067 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
101962093 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
101962119 TTATCAT
1 TTATCAT
101962126 TATGTATCAA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:101967209 original size:42 final size:42
Alignment explanation
Indices: 101967162--101967312 Score: 257
Period size: 42 Copynumber: 3.6 Consensus size: 42
101967152 AGTATTGGTC
101967162 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
1 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
101967204 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
1 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
* *
101967246 TTGGCACTAAGTGTGCGGGTATAAATGGACACGGCGACAAGA
1 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
* * *
101967288 TTGGCACTACGTGTGCGGGTTTAAA
1 TCGGCACTAAGTGTGCGGGTATAAA
101967313 ATTGTACAGC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 105 1.00
ACGTcount: A:0.29, C:0.17, G:0.33, T:0.21
Consensus pattern (42 bp):
TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
Found at i:101967377 original size:27 final size:28
Alignment explanation
Indices: 101967320--101967389 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
101967310 AAAATTGTAC
**
101967320 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
101967348 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
101967375 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
101967390 GATTCATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:101973511 original size:40 final size:39
Alignment explanation
Indices: 101973347--101973529 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
101973337 AAATTGAATG
* *
101973347 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
101973386 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
101973426 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
101973466 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
101973505 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
101973530 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.13
40 92 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:101973554 original size:80 final size:81
Alignment explanation
Indices: 101973386--101973574 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
101973376 GCTGGAAATT
* * * *
101973386 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
101973451 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
101973467 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
101973530 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
101973546 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
101973575 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:101980170 original size:40 final size:39
Alignment explanation
Indices: 101980005--101980188 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
101979995 AAATTGAATG
* * *
101980005 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
101980045 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
101980085 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
101980125 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
101980164 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
101980189 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:101980213 original size:80 final size:81
Alignment explanation
Indices: 101980045--101980233 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
101980035 GCTGGAAATT
* * * *
101980045 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
101980110 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
101980126 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
101980189 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
101980205 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
101980234 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:101985185 original size:42 final size:42
Alignment explanation
Indices: 101985138--101985288 Score: 257
Period size: 42 Copynumber: 3.6 Consensus size: 42
101985128 AGTATTGGTC
101985138 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
1 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
101985180 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
1 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
* *
101985222 TTGGCACTAAGTGTGCGGGTATAAATGGACACGGCGACAAGA
1 TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
* * *
101985264 TTGGCACTACGTGTGCGGGTTTAAA
1 TCGGCACTAAGTGTGCGGGTATAAA
101985289 ATTGTACAGC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 105 1.00
ACGTcount: A:0.29, C:0.17, G:0.33, T:0.21
Consensus pattern (42 bp):
TCGGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGA
Found at i:101985353 original size:27 final size:28
Alignment explanation
Indices: 101985296--101985365 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
101985286 AAAATTGTAC
**
101985296 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
101985324 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
101985351 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
101985366 GATTCATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:101995800 original size:73 final size:74
Alignment explanation
Indices: 101995676--101995832 Score: 212
Period size: 73 Copynumber: 2.1 Consensus size: 74
101995666 AGATTTCTGT
* * * *
101995676 TTTTCAATTTATGTTTCCAAAAATCAATTCATAGCGCTAAAGGTGAATTGAGCCTCGGGTCATAT
1 TTTTCAATTTATGTTTCCAAAAATCAACTCATAGCGCGAAAGGTGAATTGAGCCTCGGCTCACAT
101995741 AGC-GAGGTA
66 -GCTGAGGTA
* *
101995750 TTTTCAATTTATGTTT-CAAAAATCAACTCATA-CTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTTCAATTTATGTTTCCAAAAATCAACTCATAGC-GCGAAAGGTGAATTGAGCCTCGGCTCACA
*
101995813 TGCTGAGGTC
65 TGCTGAGGTA
101995823 TTTTCAATTT
1 TTTTCAATTT
101995833 CTATTTTTAT
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
72 3 0.04
73 55 0.74
74 16 0.22
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (74 bp):
TTTTCAATTTATGTTTCCAAAAATCAACTCATAGCGCGAAAGGTGAATTGAGCCTCGGCTCACAT
GCTGAGGTA
Found at i:101995969 original size:72 final size:73
Alignment explanation
Indices: 101995859--101996040 Score: 251
Period size: 72 Copynumber: 2.5 Consensus size: 73
101995849 TTGTTTTTTT
**
101995859 AAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTGACCTCC
1 AAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAACCTCC
*
101995924 GT-T-TTCGA
65 GTCTGTT-AA
* ** *
101995932 AAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAACCTCCG
101995997 TCTGTTAA
66 TCTGTTAA
**
101996005 AAATCAACTCATATCACGAGAGGTGAGTTGAGCCTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
101996041 GGCTCACATG
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
72 48 0.49
73 47 0.48
74 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAACCTCCG
TCTGTTAA
Found at i:101996213 original size:90 final size:88
Alignment explanation
Indices: 101996003--101996267 Score: 295
Period size: 90 Copynumber: 2.9 Consensus size: 88
101995993 TCTGTCTGTT
* *
101996003 AAAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG---ACATGCTGAGGT-ATTTCAAT
* *
101996067 TTTTATTTTT-AATTTCTG-TTTTTCAAA
62 TTCTATTTTTCAATTTATGTTTTTTC--A
* * *
101996094 AAAAATCAACTCATACTACGAGAGGTGAGTTGAGCCTCAGGACATGTTGAGGTAATTTCAATCTC
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGT-ATTTCAATTTC
101996159 TATTTTCTCCAATTTATGTTTTTTC-
65 TATTTT-T-CAATTTATGTTTTTTCA
* * * * *
101996184 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTCTCGATTTC
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATT-TCAATTTC
*
101996249 TGTTTTTCAATTTATGTTT
65 TATTTTTCAATTTATGTTT
101996268 CCAAAAATCA
Statistics
Matches: 151, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
88 12 0.08
89 29 0.19
90 59 0.39
91 36 0.24
92 9 0.06
93 6 0.04
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (88 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTCAATTTCT
ATTTTTCAATTTATGTTTTTTCA
Found at i:101996457 original size:76 final size:75
Alignment explanation
Indices: 101996252--101996566 Score: 342
Period size: 73 Copynumber: 4.2 Consensus size: 75
101996242 CGATTTCTGT
* * ** *
101996252 TTTTCAATTTATG-TTTCCAAAAATCAATTCATAGAGCTAAAGGTGAATTGAGCCTCGGGTCACA
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAATTGAGCCTCGGGTCACA
* *
101996316 TAGC-AAGGTA
66 -CGCTGAGGTA
*
101996326 TTTTCAATTTATG--TTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCACA
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAATTGAGCCTCGGGTCACA
*
101996389 CGCTGAGGTG
66 CGCTGAGGTA
* *
101996399 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGT-AAGTTGAGCCTCGGG--G
1 TTTTCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAAAGGTGAA-TTGAGCCTCGGGTCA
101996461 CACGCTGAGGTA
64 CACGCTGAGGTA
* * * * * * *
101996473 TTTTCAA-TCATTGTTTTTCAAGAATTAATTCATATTGCTAGAGGTGAATTGAGCCTCAGGATCA
1 TTTTCAATTTA-TGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAATTGAGCCTC-GGGTCA
101996537 CACG-TCGAGGTA
64 CACGCT-GAGGTA
*
101996549 TTTTCAATTAATGTTTTT
1 TTTTCAATTTATGTTTTT
101996567 TTCAATTTAT
Statistics
Matches: 208, Mismatches: 21, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
72 2 0.01
73 94 0.45
74 43 0.21
75 6 0.03
76 61 0.29
77 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (75 bp):
TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAATTGAGCCTCGGGTCACA
CGCTGAGGTA
Found at i:101996525 original size:149 final size:148
Alignment explanation
Indices: 101996252--101996566 Score: 354
Period size: 149 Copynumber: 2.1 Consensus size: 148
101996242 CGATTTCTGT
* * * *
101996252 TTTTCAATTTATG--TTTCCAAAAATCAATTCATAGAGCTAAAGGTGAATTGAGCCTCGGGTCAC
1 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATAGAGCGAAAGGTGAATTGAGCCTCGGGGCAC
*
101996315 ATAGCAAGGTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT
66 --AGCAAGGTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAAAGGTGAATTGAGCCT
* *
101996380 C-GGGTCACACG-CTGAGGTG
129 CAGGATCACACGTC-GAGGTA
** *
101996399 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGT-AAGTTGAGCCTCGGGGCA
1 TTTTCAATTTATGTTTTTCAAAAAATCAACTCATAGAGCGAAAGGTGAA-TTGAGCCTCGGGGCA
* * * * * * * *
101996463 C-GCTGAGGTATTTTCAATCATTGTTTTTCAAGAATTAATTCATATTGCTAGAGGTGAATTGAGC
65 CAGC-AAGGTATTTTCAAT--TTATGTTTCAAAAATCAACTCATATTGCGAAAGGTGAATTGAGC
101996527 CTCAGGATCACACGTCGAGGTA
127 CTCAGGATCACACGTCGAGGTA
*
101996549 TTTTCAATTAATGTTTTT
1 TTTTCAATTTATGTTTTT
101996567 TTCAATTTAT
Statistics
Matches: 141, Mismatches: 19, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
146 2 0.01
147 26 0.18
148 2 0.01
149 79 0.56
150 31 0.22
151 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (148 bp):
TTTTCAATTTATGTTTTTCAAAAAATCAACTCATAGAGCGAAAGGTGAATTGAGCCTCGGGGCAC
AGCAAGGTATTTTCAATTTATGTTTCAAAAATCAACTCATATTGCGAAAGGTGAATTGAGCCTCA
GGATCACACGTCGAGGTA
Found at i:101996582 original size:16 final size:16
Alignment explanation
Indices: 101996549--101996582 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
101996539 CGTCGAGGTA
*
101996549 TTTTCAATTAATGTTT
1 TTTTCAATTAATGCTT
*
101996565 TTTTCAATTTATGCTT
1 TTTTCAATTAATGCTT
101996581 TT
1 TT
101996583 CAAGAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTTCAATTAATGCTT
Found at i:101997229 original size:25 final size:25
Alignment explanation
Indices: 101997195--101997242 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
101997185 AAAAGTCTTT
*
101997195 ACTCTATTCTCGTTACACGACAACA
1 ACTCTATTCTCGTTACACAACAACA
*
101997220 ACTCTGTTCTCGTTACACAACAA
1 ACTCTATTCTCGTTACACAACAA
101997243 TGAGTAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.29
Consensus pattern (25 bp):
ACTCTATTCTCGTTACACAACAACA
Found at i:101998002 original size:11 final size:11
Alignment explanation
Indices: 101997986--101998019 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
101997976 CCTTCCCCCT
101997986 TCCCTTCTCTC
1 TCCCTTCTCTC
101997997 TCCCTTCTCTC
1 TCCCTTCTCTC
101998008 TTCCC-TCTCTC
1 -TCCCTTCTCTC
101998019 T
1 T
101998020 TTTTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 17 0.77
12 4 0.18
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:101998003 original size:23 final size:22
Alignment explanation
Indices: 101997975--101998019 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
101997965 GGCCGGATTC
101997975 CCCTTCCCCCTTCCCTTCTCTCT
1 CCCTTCCCCCTTCCC-TCTCTCT
* *
101997998 CCCTTCTCTCTTCCCTCTCTCT
1 CCCTTCCCCCTTCCCTCTCTCT
101998020 TTTTTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (22 bp):
CCCTTCCCCCTTCCCTCTCTCT
Found at i:101999033 original size:11 final size:11
Alignment explanation
Indices: 101998932--101999044 Score: 72
Period size: 11 Copynumber: 10.1 Consensus size: 11
101998922 ATTTTTAATG
101998932 TATGTATATA-
1 TATGTATATAT
*
101998942 T-TGTATATGT
1 TATGTATATAT
* * *
101998952 TTTATATATGT
1 TATGTATATAT
101998963 TATGTATATAT
1 TATGTATATAT
* *
101998974 T-TTTAAATACT
1 TATGTATATA-T
*
101998985 ATATTGTATATGT
1 -TA-TGTATATAT
*
101998998 ATATGTATATTCT
1 -TATGTATA-TAT
101999011 TA-GTACTATAT
1 TATGTA-TATAT
101999022 TATGTATATAT
1 TATGTATATAT
101999033 TATGTATATAT
1 TATGTATATAT
101999044 T
1 T
101999045 TATTTTTACC
Statistics
Matches: 82, Mismatches: 12, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
9 7 0.09
10 8 0.10
11 42 0.51
12 14 0.17
13 6 0.07
14 5 0.06
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.55
Consensus pattern (11 bp):
TATGTATATAT
Found at i:102003029 original size:47 final size:46
Alignment explanation
Indices: 102002907--102003037 Score: 174
Period size: 46 Copynumber: 2.8 Consensus size: 46
102002897 ATAATTTCAC
* * *
102002907 CCATAATGAACTCGAAACGCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGTTCGCAT
* **
102002953 CCATAATAAACTCGGAATACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATG-TTCGCAT
*
102002999 CCATAAGTGAACTTGGAACGCAACTCAACGAGTTCGGAT
1 CCATAA-TGAACTCGGAACGCAACTCAACGAGTTCGGAT
102003038 CTCAATTTCC
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
46 43 0.59
47 30 0.41
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:102005784 original size:3 final size:3
Alignment explanation
Indices: 102005776--102005834 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
102005766 TATTTTAATT
* *
102005776 TTA TTA TTA -TA TTTA TTA TTA TTG TTA TTA TTA TTA TTA GTA -TA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
102005820 TTT TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA
102005835 GAATTATTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
2 4 0.09
3 40 0.87
4 2 0.04
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:102005790 original size:12 final size:11
Alignment explanation
Indices: 102005763--102005833 Score: 65
Period size: 12 Copynumber: 6.2 Consensus size: 11
102005753 TTTTTACCAT
102005763 TTTTATT-TTAA
1 TTTTATTATT-A
102005774 TTTTATTATTA
1 TTTTATTATTA
102005785 TATTTATTATTA
1 T-TTTATTATTA
102005797 TTGTTATTATTA
1 TT-TTATTATTA
*
102005809 TTATTAGTA-TA
1 TT-TTATTATTA
*
102005820 TTTTTACTATTA
1 -TTTTATTATTA
102005832 TT
1 TT
102005834 AGAATTATTT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
11 19 0.37
12 33 0.63
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.68
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:102005964 original size:24 final size:24
Alignment explanation
Indices: 102005937--102005994 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
102005927 ATATGTTATG
*
102005937 TATACATATTTAAATACTATATTA
1 TATACATATTTAAATACTACATTA
* * *
102005961 TATACATATTTTAATGCTACGTTA
1 TATACATATTTAAATACTACATTA
102005985 TATACATATT
1 TATACATATT
102005995 ATTATTATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (24 bp):
TATACATATTTAAATACTACATTA
Done.