Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 329 of 425
Found at i:102198097 original size:26 final size:26
Alignment explanation
Indices: 102198021--102198097 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 26
102198011 ACACTTAAAT
* * *
102198021 TTTTCCAAAGCACTTCTCAAAAGTAC
1 TTTTCAAAAGCACTTTTCAAAAGCAC
* * * *
102198047 TTCTCAAATA-CATTTTTCCACAGCAC
1 TTTTCAAA-AGCACTTTTCAAAAGCAC
102198073 TTTTCAAAAGCACTTTTCAAAAGCA
1 TTTTCAAAAGCACTTTTCAAAAGCA
102198098 ATGAAGAACT
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
25 1 0.03
26 36 0.95
27 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
TTTTCAAAAGCACTTTTCAAAAGCAC
Found at i:102200807 original size:37 final size:38
Alignment explanation
Indices: 102200768--102200840 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 38
102200758 TTGAAAGATC
* * *
102200768 AAATTTTTATAATATGTGTATATATAATTA-ATGATTCA
1 AAATTTTAAT-ATATATATATATATAATTATATGATTCA
*
102200806 AAATTTTAATATATATATATATATATTTATATGAT
1 AAATTTTAATATATATATATATATAATTATATGAT
102200841 ATGGGTAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 16 0.53
38 14 0.47
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (38 bp):
AAATTTTAATATATATATATATATAATTATATGATTCA
Found at i:102202048 original size:23 final size:23
Alignment explanation
Indices: 102202000--102202052 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
102201990 AAAAAATAAT
* * *
102202000 TTCAAGTTAATCGAATCGAGTTA
1 TTCAAGTAAATCGAATCAAGTAA
102202023 TTCAAGTCAAATCGAAT-AAGTAA
1 TTCAAGT-AAATCGAATCAAGTAA
102202046 TTCAAGT
1 TTCAAGT
102202053 TTCGAGTTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (23 bp):
TTCAAGTAAATCGAATCAAGTAA
Found at i:102202211 original size:19 final size:19
Alignment explanation
Indices: 102202189--102202239 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
102202179 AAATTACAAA
102202189 AAAAATT-AAAATAAATTTT
1 AAAAATTCAAAAT-AATTTT
*
102202208 -AAAATTCAAAATATTTTT
1 AAAAATTCAAAATAATTTT
102202226 AAAAATTCTAAAAT
1 AAAAATTC-AAAAT
102202240 TTATATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 11 0.39
19 12 0.43
20 5 0.18
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:102202289 original size:44 final size:44
Alignment explanation
Indices: 102202204--102202290 Score: 106
Period size: 44 Copynumber: 1.9 Consensus size: 44
102202194 TTAAAATAAA
* *
102202204 TTTTAAAATTCAAAATATTTTTAAAAATTCTAAAATTTATATTT
1 TTTTAAAATTCAAAATAATTTTAAAAATTCTAAAATATATATTT
102202248 TTTTAAAATT-ATAAA-AATTTTAAAAATTTCTAAAGAATATATA
1 TTTTAAAATTCA-AAATAATTTTAAAAA-TTCT-AA-AATATATA
102202291 AAAAAGGTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
43 11 0.30
44 17 0.46
45 2 0.05
46 7 0.19
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (44 bp):
TTTTAAAATTCAAAATAATTTTAAAAATTCTAAAATATATATTT
Found at i:102202312 original size:9 final size:9
Alignment explanation
Indices: 102202201--102202323 Score: 58
Period size: 9 Copynumber: 13.4 Consensus size: 9
102202191 AAATTAAAAT
102202201 AAATTTT-A
1 AAATTTTAA
*
102202209 AAA-TTCAA
1 AAATTTTAA
102202217 AATATTTTTAA
1 AA-A-TTTTAA
*
102202228 AAATTCT-A
1 AAATTTTAA
*
102202236 AAA-TTTAT
1 AAATTTTAA
** *
102202244 ATTTTTTTA
1 AAATTTTAA
*
102202253 AAATTATAA
1 AAATTTTAA
102202262 AAATTTTAA
1 AAATTTTAA
102202271 AAATTTCTAA
1 AAATTT-TAA
*
102202281 AGAATATATAAA
1 A-AAT-T-TTAA
**
102202293 AAAGGTT-A
1 AAATTTTAA
102202301 AAATTTTAA
1 AAATTTTAA
102202310 AAATTTTATA
1 AAATTTTA-A
102202320 AAAT
1 AAAT
102202324 AATAATTTTG
Statistics
Matches: 83, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
7 4 0.05
8 17 0.20
9 36 0.43
10 10 0.12
11 11 0.13
12 4 0.05
13 1 0.01
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (9 bp):
AAATTTTAA
Found at i:102214431 original size:30 final size:30
Alignment explanation
Indices: 102214395--102214452 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
102214385 TTATATATAT
*
102214395 ATAGCCGAAGCTATCTCAAATTGCACACCA
1 ATAGCCGAAGCTATCTCAAACTGCACACCA
* *
102214425 ATAGCCGAAGCTATTTCGAACTGCACAC
1 ATAGCCGAAGCTATCTCAAACTGCACAC
102214453 TAAGTGTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (30 bp):
ATAGCCGAAGCTATCTCAAACTGCACACCA
Found at i:102223031 original size:48 final size:48
Alignment explanation
Indices: 102222882--102223202 Score: 207
Period size: 48 Copynumber: 6.8 Consensus size: 48
102222872 ACCACATATT
* * * * *
102222882 GATGCCATATCCCAGATATGGTCTTATAC-GAAGTCTCAT-GTCGGTGCC
1 GATGCCATGTCCCAGATATGGTCTTACACGGGA-TCTCATACT-GATGCC
* * * * * * *
102222930 GATGCCATGTCCCTA-ACATAGTCTTATACGAGACCTCACA-TCGATACC
1 GATGCCATGTCCC-AGATATGGTCTTACACGGGATCTCATACT-GATGCC
* * * *
102222978 AATGCCATATCCCAGATATGGTCTTACATGGGATCTCATACTGGTGCC
1 GATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATACTGATGCC
* *
102223026 GATGCCATGTCCCAGACATGGTCTTACACGGGATCTC-T--T-AT--T
1 GATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATACTGATGCC
* * * ** * *
102223068 GATGCCATGTCCTAGACATGGTCTTATACGAAATCACTTAAC-GATGCC
1 GATGCCATGTCCCAGATATGGTCTTACACGGGATCTCAT-ACTGATGCC
* * * * * * * *
102223116 GAAGCCATATCCCTGATATGGTATTATATGGGATCACAT-TTCGATGCC
1 GATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATACT-GATGCC
102223164 GATGCCATGTCCCAGATATGGTCTTACACGGGATCTCAT
1 GATGCCATGTCCCAGATATGGTCTTACACGGGATCTCAT
102223203 TAACTATGGT
Statistics
Matches: 209, Mismatches: 50, Indels: 28
0.73 0.17 0.10
Matches are distributed among these distances:
42 32 0.15
43 1 0.00
44 1 0.00
45 1 0.00
46 2 0.01
47 2 0.01
48 167 0.80
49 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGATATGGTCTTACACGGGATCTCATACTGATGCC
Found at i:102223073 original size:42 final size:45
Alignment explanation
Indices: 102222843--102223202 Score: 153
Period size: 48 Copynumber: 7.8 Consensus size: 45
102222833 GAGTGCCAAA
* * * *
102222843 GCCATGTCCCAGACATGGTCTTACATGAGACCACATA-T-T-GAT
1 GCCATGTCCCAGACATGGTCTTACACGGGATCTCATACTGTCGAT
* * * * * *
102222885 GCCATATCCCAGATATGGTCTTATAC-GAAGTCTCATGTCGGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACGGGA-TCTCAT-AC--TGTCGAT
* * * * * *
102222933 GCCATGTCCCTA-ACATAGTCTTATACGAGACCTCACA-TCGATACCAAT
1 GCCATGTCCC-AGACATGGTCTTACACGGGATCTCATACT-G-T--CGAT
* * *
102222981 GCCATATCCCAGATATGGTCTTACATGGGATCTCATACTGGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACGGGATCTCATACT-GT--CGAT
*
102223029 GCCATGTCCCAGACATGGTCTTACACGGGATCTCTTA-T-T-GAT
1 GCCATGTCCCAGACATGGTCTTACACGGGATCTCATACTGTCGAT
* * ** * * * *
102223071 GCCATGTCCTAGACATGGTCTTATACGAAATCACTTAACGATGCCGAA
1 GCCATGTCCCAGACATGGTCTTACACGGGATCTCAT-AC--TGTCGAT
* * * * * * * * *
102223119 GCCATATCCCTGATATGGTATTATATGGGATCACATTTCGATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACGGGATCTCA-TAC--TGTCGAT
*
102223167 GCCATGTCCCAGATATGGTCTTACACGGGATCTCAT
1 GCCATGTCCCAGACATGGTCTTACACGGGATCTCAT
102223203 TAACTATGGT
Statistics
Matches: 237, Mismatches: 59, Indels: 39
0.71 0.18 0.12
Matches are distributed among these distances:
41 1 0.00
42 60 0.25
43 1 0.00
44 1 0.00
45 2 0.01
46 2 0.01
47 3 0.01
48 162 0.68
49 5 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (45 bp):
GCCATGTCCCAGACATGGTCTTACACGGGATCTCATACTGTCGAT
Found at i:102223077 original size:138 final size:137
Alignment explanation
Indices: 102222930--102223200 Score: 361
Period size: 138 Copynumber: 2.0 Consensus size: 137
102222920 TGTCGGTGCC
* *
102222930 GATGCCATGTCCCTA-ACATAGTCTTATACGAGACCTCAC-ATCGATACC-AATGCCATATCCCA
1 GATGCCATGT-CCTAGACATAGTCTTATACGA-A-ATCACTAACGATACCGAA-GCCATATCCCA
* * *
102222992 GATATGGTCTTACATGGGATCTCATACT-GGTGCCGATGCCATGTCCCAGACATGGTCTTACACG
62 GATATGGTATTACATGGGATCACAT-CTCGATGCCGATGCCATGTCCCAGACATGGTCTTACACG
102223056 GGATCTCTTATT
126 GGATCTCTTATT
* * *
102223068 GATGCCATGTCCTAGACATGGTCTTATACGAAATCACTTAACGATGCCGAAGCCATATCCCTGAT
1 GATGCCATGTCCTAGACATAGTCTTATACGAAATCAC-TAACGATACCGAAGCCATATCCCAGAT
* * *
102223133 ATGGTATTATATGGGATCACATTTCGATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGAT
65 ATGGTATTACATGGGATCACATCTCGATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGAT
102223198 CTC
130 CTC
102223201 ATTAACTATG
Statistics
Matches: 117, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
136 4 0.03
137 6 0.05
138 105 0.90
139 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (137 bp):
GATGCCATGTCCTAGACATAGTCTTATACGAAATCACTAACGATACCGAAGCCATATCCCAGATA
TGGTATTACATGGGATCACATCTCGATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATC
TCTTATT
Found at i:102223171 original size:186 final size:185
Alignment explanation
Indices: 102222843--102223202 Score: 452
Period size: 186 Copynumber: 1.9 Consensus size: 185
102222833 GAGTGCCAAA
* *
102222843 GCCATGTCCCAGACATGGTCTTACATGAGACCACATATTGATGCCATATCCCAGATATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTACACGAGACCACATATTGATGCCATATCCCAGACATGGTCTTA
* * ** * * * *
102222908 TACGAAGTCTCATGTCGGTGCCGATGCCATGTCCCTAACATAGTCTTATACGAGACCTCACATCG
66 TACGAAATCACATAACGATGCCGAAGCCATATCCCTAACATAGTATTATACGAGA-CTCACATCG
*
102222973 ATACCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATACTGGTGCCGAT
130 ATACCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATACTGGTGCCGAT
* * * * * *
102223029 GCCATGTCCCAGACATGGTCTTACACGGGATCTCTTATTGATGCCATGTCCTAGACATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTACACGAGACCACATATTGATGCCATATCCCAGACATGGTCTTA
* * * * * *
102223094 TACGAAATCACTTAACGATGCCGAAGCCATATCCCTGATATGGTATTATATGGGA-TCACATTTC
66 TACGAAATCACATAACGATGCCGAAGCCATATCCCTAACATAGTATTATACGAGACTCACA--TC
* * *
102223158 GATGCCGATGCCATGTCCCAGATATGGTCTTACACGGGATCTCAT
129 GATACCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCAT
102223203 TAACTATGGT
Statistics
Matches: 146, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
184 5 0.03
186 141 0.97
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (185 bp):
GCCATGTCCCAGACATGGTCTTACACGAGACCACATATTGATGCCATATCCCAGACATGGTCTTA
TACGAAATCACATAACGATGCCGAAGCCATATCCCTAACATAGTATTATACGAGACTCACATCGA
TACCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATACTGGTGCCGAT
Found at i:102223732 original size:16 final size:16
Alignment explanation
Indices: 102223711--102223743 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102223701 TTTTTATCAA
102223711 TCAATTTA-TACCTTTT
1 TCAATTTAGT-CCTTTT
102223727 TCAATTTAGTCCTTTT
1 TCAATTTAGTCCTTTT
102223743 T
1 T
102223744 AGGTGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.21, C:0.18, G:0.03, T:0.58
Consensus pattern (16 bp):
TCAATTTAGTCCTTTT
Found at i:102225007 original size:86 final size:86
Alignment explanation
Indices: 102224868--102225111 Score: 375
Period size: 86 Copynumber: 2.8 Consensus size: 86
102224858 AACCAAAATG
*
102224868 AGAATCAGAATCAGAATCAGTAACAGATTCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
* *
102224933 TCAGAATTA-AGTGACAG-AATC
66 TCAGAATCAGAATGA-AGTAA-C
102224954 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
* * *
102225019 TCAGAATCAGAATTAGGTGAC
66 TCAGAATCAGAATGAAGTAAC
* *
102225040 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
*
102225105 TTAGAAT
66 TCAGAAT
102225112 GTGAATGCAA
Statistics
Matches: 147, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
86 143 0.97
87 4 0.03
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (86 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAA
TCAGAATCAGAATGAAGTAAC
Found at i:102225105 original size:6 final size:6
Alignment explanation
Indices: 102224868--102225086 Score: 191
Period size: 6 Copynumber: 35.8 Consensus size: 6
102224858 AACCAAAATG
* *
102224868 AGAATC AGAATC AGAATC AGTAA-C AGATTC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* * *
102224916 AG-GTGAC AGAATC AGAATC AGAATT A-AGTGAC AGAATC AGAATC AGAATC
1 AGAAT--C AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
102224966 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * *
102225015 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
102225064 AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT
102225087 TAGGTGACAG
Statistics
Matches: 173, Mismatches: 22, Indels: 36
0.75 0.10 0.16
Matches are distributed among these distances:
5 10 0.06
6 146 0.84
7 12 0.07
8 5 0.03
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:102225277 original size:27 final size:26
Alignment explanation
Indices: 102225233--102225302 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 26
102225223 TGGCTGCCAA
* * *
102225233 AACAGATATCGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
102225259 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
102225286 AATCAGATAATGTGGCA
1 AA-CAGATATTGTGGCA
102225303 AACCCACCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 2 0.05
27 36 0.95
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:102225309 original size:27 final size:27
Alignment explanation
Indices: 102225253--102225310 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
102225243 GTGACAGAGT
* * *
102225253 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
102225280 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
102225307 CACC
1 CACC
102225311 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:102225515 original size:22 final size:22
Alignment explanation
Indices: 102225467--102225525 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
102225457 GTAAATACGT
*
102225467 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
102225489 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
102225511 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
102225526 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:102225652 original size:27 final size:26
Alignment explanation
Indices: 102225613--102225695 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
102225603 TCGATCGGTC
* *
102225613 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
*
102225639 ATACAGATATTGTGGCAGAGCCACCAT
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
102225666 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
102225693 AAC
1 AAC
102225696 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:102225924 original size:27 final size:27
Alignment explanation
Indices: 102225894--102226089 Score: 266
Period size: 27 Copynumber: 7.3 Consensus size: 27
102225884 GGGGCAAAAT
* ** *
102225894 GGTAATTTTACCCTACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
102225921 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
102225948 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
102225975 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
102226002 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
102226029 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
102226056 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
102226083 AGTAATT
1 GGTAATT
102226090 TCACAATCAA
Statistics
Matches: 148, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:102226708 original size:27 final size:27
Alignment explanation
Indices: 102226094--102226691 Score: 753
Period size: 27 Copynumber: 22.2 Consensus size: 27
102226084 GTAATTTCAC
*
102226094 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
102226121 AATCGAGGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
102226148 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * * **
102226175 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
102226202 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
102226229 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
102226256 AA-CTAAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
102226283 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
102226310 AA-CTAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
102226337 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
102226364 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
102226391 AATTGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
102226418 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
102226445 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
102226472 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
102226499 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
102226526 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
102226553 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
102226580 AA-CTGAAGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
102226607 AATCGA-GGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
102226633 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
102226660 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
102226687 AATCG
1 AATCG
102226692 GGAGTACTTT
Statistics
Matches: 500, Mismatches: 56, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
26 32 0.06
27 458 0.92
28 10 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:102231967 original size:51 final size:51
Alignment explanation
Indices: 102231890--102231991 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
102231880 AGTCTCGAAG
*
102231890 TGATAGGTAAAGTTAGGCAATTGGATACCTCGGGCT-ACTAAGTAATGTACC
1 TGATAGGTAAAGTTAGGCAATCGGATACCTCGGGCTGAC-AAGTAATGTACC
* * *
102231941 TGATAGGTAAAGTTAGGCAGTCGGATACCTCGGGTTGGCAAGTAATGTACC
1 TGATAGGTAAAGTTAGGCAATCGGATACCTCGGGCTGACAAGTAATGTACC
102231992 ATCTCCTCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 45 0.98
52 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (51 bp):
TGATAGGTAAAGTTAGGCAATCGGATACCTCGGGCTGACAAGTAATGTACC
Found at i:102232551 original size:18 final size:18
Alignment explanation
Indices: 102232528--102232563 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
102232518 AAAGCAGGAA
102232528 TGTTTGCTAGAGCTGGTC
1 TGTTTGCTAGAGCTGGTC
*
102232546 TGTTTGCTAGAGTTGGTC
1 TGTTTGCTAGAGCTGGTC
102232564 ATTTATCGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.14, G:0.33, T:0.42
Consensus pattern (18 bp):
TGTTTGCTAGAGCTGGTC
Found at i:102236030 original size:47 final size:45
Alignment explanation
Indices: 102235980--102236237 Score: 248
Period size: 47 Copynumber: 5.5 Consensus size: 45
102235970 GTGCCAATGC
* **
102235980 CATGTCCCAGACATGGTCTTACATTGGCTCACATCTCAAGTTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCAAGCCGATG
** *
102236026 CCATGTCCCAGACATGGTCTTACACTTACT-ATCATCTCGTAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTC-AAGCCGATG
* * * *
102236074 CATGTCCCAGACATGTCTTACACTGGTTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCACATCTC-AAGCCGATG
* * *
102236120 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCACATCTCAA-GCCGATG
* * *** *
102236166 TCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCACAT-CTCAAGCCGATG
102236214 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
102236238 AGCCAACAAT
Statistics
Matches: 178, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 72 0.40
47 75 0.42
48 29 0.16
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGCCGATG
Found at i:102236227 original size:94 final size:92
Alignment explanation
Indices: 102235980--102236240 Score: 305
Period size: 94 Copynumber: 2.8 Consensus size: 92
102235970 GTGCCAATGC
* * * * *
102235980 CATGTCCCAGACATGGTCTTACATTGGCTCACATCTCAAGTTGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTGAGGCTGATG-CATGTCCCAGACAT-GTC
*
102236045 TTACACTTA-CTATCATCTCGTAGCCGATG
64 TTACAC-TAGCTATCATCTCATAGCCGATG
* * *
102236074 CATGTCCCAGACAT-GTCTTACACTGG-TTTACGTCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTCT-CATCT-GAGGCTGATGCATGTCCCAGACATGTC
* *
102236137 TTACACTAGCTCTCATCTCA-ATGTCGATG
64 TTACACTAGCTATCATCTCATA-GCCGATG
* *
102236166 TCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAGACATGTC
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CTGAGGCTGATGCATGTCCCAGACATGTC
102236231 TTACACTAGC
64 TTACACTAGC
102236241 CAACAATAAC
Statistics
Matches: 143, Mismatches: 16, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
91 3 0.02
92 25 0.17
93 43 0.30
94 69 0.48
95 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (92 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTGAGGCTGATGCATGTCCCAGACATGTCTT
ACACTAGCTATCATCTCATAGCCGATG
Found at i:102236232 original size:140 final size:140
Alignment explanation
Indices: 102235980--102236237 Score: 385
Period size: 140 Copynumber: 1.8 Consensus size: 140
102235970 GTGCCAATGC
* * *
102235980 CATGTCCCAGACATGGTCTTACATTGGCTCACATCTCAAGTTGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGACATGGTC
* *
102236045 TTACACTTACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGTTTACGTCTC
66 TTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGTTTACGTCTC
102236110 GAGGCCGATG
131 GAGGCCGATG
* *
102236120 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAATGTCGATGTCATGTCCCAGACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA-GTCGATGCCATGTCCCAGACATGGT
* * * *
102236184 CTTACACTGGCTCTCATAAT-GTGGCTGATGCATGTCCCAGACATGTCTTACACT
65 CTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
102236238 AGCCAACAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
139 21 0.20
140 83 0.79
141 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAGTCGATGCCATGTCCCAGACATGGTC
TTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGTTTACGTCTC
GAGGCCGATG
Found at i:102236618 original size:30 final size:30
Alignment explanation
Indices: 102236578--102236634 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
102236568 AATTCACATC
* *
102236578 TTTGGTAAAATGACCATTTTGCCCCTAGAA
1 TTTGGCAAAATGACCATTTTACCCCTAGAA
*
102236608 TTTGGCAAAATGGCCATTTTACCCCTA
1 TTTGGCAAAATGACCATTTTACCCCTA
102236635 TGCTTGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAA
Found at i:102238413 original size:34 final size:34
Alignment explanation
Indices: 102238375--102238444 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
102238365 CATCACATAT
* *
102238375 TAGTCAATGTGTATTATTCCAAATTCATATATCA
1 TAGTCAATGTGCATCATTCCAAATTCATATATCA
102238409 TAGTCAATGTGCATCATTCCAAATTCATATATCA
1 TAGTCAATGTGCATCATTCCAAATTCATATATCA
102238443 TA
1 TA
102238445 TATAACATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.39
Consensus pattern (34 bp):
TAGTCAATGTGCATCATTCCAAATTCATATATCA
Found at i:102238659 original size:23 final size:23
Alignment explanation
Indices: 102238622--102238721 Score: 80
Period size: 23 Copynumber: 4.3 Consensus size: 23
102238612 TGATGAACAA
* *
102238622 TAAGCTCTATTGAGCTGAAACGG
1 TAAGCTTTATCGAGCTGAAACGG
*
102238645 TAAGCTTTATCGAGCTG-AACAG
1 TAAGCTTTATCGAGCTGAAACGG
* * *
102238667 TAAGC-TCATACGACCTGAAATGG
1 TAAGCTTTAT-CGAGCTGAAACGG
102238690 TAAGCTCTTAT-GAGCTGATATATCGG
1 TAAGCT-TTATCGAGCTGA-A-A-CGG
102238716 TAAGCT
1 TAAGCT
102238722 CATATGAGCT
Statistics
Matches: 60, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
21 3 0.05
22 15 0.25
23 29 0.48
24 1 0.02
25 4 0.07
26 8 0.13
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (23 bp):
TAAGCTTTATCGAGCTGAAACGG
Found at i:102238671 original size:45 final size:45
Alignment explanation
Indices: 102238615--102238707 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 45
102238605 TCTGAGATGA
* *
102238615 TGAACAATAAGCTC-TATTGAGCTGAAACGGTAAGCT-TTATCGAGC
1 TGAACAATAAGCTCATA-CGACCTGAAACGGTAAGCTCTTAT-GAGC
* *
102238660 TGAACAGTAAGCTCATACGACCTGAAATGGTAAGCTCTTATGAGC
1 TGAACAATAAGCTCATACGACCTGAAACGGTAAGCTCTTATGAGC
102238705 TGA
1 TGA
102238708 TATATCGGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
45 36 0.86
46 6 0.14
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (45 bp):
TGAACAATAAGCTCATACGACCTGAAACGGTAAGCTCTTATGAGC
Found at i:102242883 original size:31 final size:31
Alignment explanation
Indices: 102242800--102242885 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
102242790 TCAATCTCAG
*
102242800 CATAT-ACTGGGCTGAAGCCTTCACATTATT
1 CATATCACTGGGCTGAAGCCTTTACATTATT
* *
102242830 CATGTCACTGGGCTGAAGCCTTTTCATTATT
1 CATATCACTGGGCTGAAGCCTTTACATTATT
*
102242861 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCTGAAGCCTTTAC
102242886 TATAACGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCTGAAGCCTTTACATTATT
Found at i:102243118 original size:25 final size:25
Alignment explanation
Indices: 102243090--102243225 Score: 163
Period size: 26 Copynumber: 5.4 Consensus size: 25
102243080 CTGGAGGCCT
*
102243090 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTGATAAACTGGGGCAAA
102243115 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCC-TTTTGATAAACTGGGGCAAA
102243141 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCC-TTTTGATAAACTGGGGCAAA
*
102243167 AGCCCTTTTCGGTAAACTGGGGC-AA
1 AGCCCTTTT-GATAAACTGGGGCAAA
* *
102243192 AGCCCTTTTCGGT-AACTGGGGC-AT
1 AGCCCTTTT-GATAAACTGGGGCAAA
102243216 AGCCCTTTTG
1 AGCCCTTTTG
102243226 CACTTCTTCC
Statistics
Matches: 105, Mismatches: 3, Indels: 8
0.91 0.03 0.07
Matches are distributed among these distances:
23 1 0.01
24 20 0.19
25 29 0.28
26 55 0.52
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:102243139 original size:26 final size:26
Alignment explanation
Indices: 102243103--102243224 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
102243093 CTCTTTTAAT
*
102243103 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
102243129 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
102243155 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
102243181 AACTGGGGC-AAAGCCCTTTTCGGT-
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
102243205 AACTGGGGC-ATAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
102243225 GCACTTCTTC
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
24 19 0.20
25 15 0.16
26 59 0.63
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGATA
Found at i:102243302 original size:11 final size:11
Alignment explanation
Indices: 102243271--102243318 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
102243261 AAATGAATAC
102243271 ATCATGTGCAT
1 ATCATGTGCAT
*
102243282 ATCA--TACAT
1 ATCATGTGCAT
102243291 ATCATGTGCAT
1 ATCATGTGCAT
*
102243302 ATCATGT-CAA
1 ATCATGTGCAT
102243312 ATCATGT
1 ATCATGT
102243319 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:102250965 original size:31 final size:31
Alignment explanation
Indices: 102250882--102250967 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 31
102250872 TCAATCTCAA
*
102250882 CATAT-ACTGGGCCGAAGCCTTCACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
102250912 CATGTCACTGGGTCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
102250943 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
102250968 TATAACGATA
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 4 0.08
31 44 0.92
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:102251223 original size:26 final size:26
Alignment explanation
Indices: 102251177--102251305 Score: 167
Period size: 26 Copynumber: 5.1 Consensus size: 26
102251167 GCCTAGCCTC
*
102251177 TTTTAATAAA-TGGGGCAAAAGCCCT
1 TTTTGATAAACTGGGGCAAAAGCCCT
102251202 TTTTGATAAACTGGGGCAAAAGCCCT
1 TTTTGATAAACTGGGGCAAAAGCCCT
*
102251228 TTTTGATAAACTGGGGCAAAAGTCCT
1 TTTTGATAAACTGGGGCAAAAGCCCT
* *
102251254 TTTCGGTAAACTGGGGC-AAAGCCCT
1 TTTTGATAAACTGGGGCAAAAGCCCT
* * *
102251279 TTTCGGT-AACTGGGGC-ATAGCCCT
1 TTTTGATAAACTGGGGCAAAAGCCCT
102251303 TTT
1 TTT
102251306 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
24 19 0.20
25 23 0.24
26 55 0.57
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
TTTTGATAAACTGGGGCAAAAGCCCT
Found at i:102251464 original size:25 final size:25
Alignment explanation
Indices: 102251436--102251483 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102251426 ATAATTAAAC
* **
102251436 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
102251461 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
102251484 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:102254294 original size:2 final size:2
Alignment explanation
Indices: 102254287--102254321 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
102254277 TCGATCGGAG
102254287 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
102254322 GTACGCACAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:102254444 original size:29 final size:29
Alignment explanation
Indices: 102254420--102254513 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
102254410 TCGCACACCC
*
102254420 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
102254449 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
102254478 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
102254507 AGTGCCA
1 AGTGCCA
102254514 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:102254445 original size:58 final size:58
Alignment explanation
Indices: 102254383--102254513 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 58
102254373 ATTTAAGCCC
* * * *
102254383 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
102254441 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
102254499 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
102254514 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
58 63 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:102259232 original size:27 final size:27
Alignment explanation
Indices: 102259194--102259250 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
102259184 ATCCACAATA
*
102259194 TATGCATGATCTTAGCCACCGTTAATG
1 TATGCATGATCTTAGCCACCGGTAATG
102259221 TATGCATGATCTTAGCCACCGGTAATG
1 TATGCATGATCTTAGCCACCGGTAATG
102259248 TAT
1 TAT
102259251 CTATCATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
TATGCATGATCTTAGCCACCGGTAATG
Found at i:102262047 original size:28 final size:28
Alignment explanation
Indices: 102261984--102262048 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 28
102261974 CATATAAATT
* * * **
102261984 TGACCAAAAAAAACATTACGTGTTAAAG
1 TGACCAAAAAAAACATAAAGGGACAAAG
*
102262012 TGCTCCAAAAAAAACATAAAGGGACAAAG
1 TG-ACCAAAAAAAACATAAAGGGACAAAG
102262041 TGACCAAA
1 TGACCAAA
102262049 CAACCAAACG
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.52, C:0.17, G:0.15, T:0.15
Consensus pattern (28 bp):
TGACCAAAAAAAACATAAAGGGACAAAG
Found at i:102271252 original size:48 final size:48
Alignment explanation
Indices: 102271187--102271691 Score: 679
Period size: 48 Copynumber: 10.1 Consensus size: 48
102271177 GCTGAAATTG
*
102271187 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
102271235 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
102271283 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-AT
* * *
102271335 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-AT
* *
102271387 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
102271435 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTTAATGTGAAATATATATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--------A-A-AT
*
102271493 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
102271541 ATGTATGAGATATGCATATGTGATAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
102271591 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
102271639 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
102271687 ATGTA
1 ATGTA
102271692 GGCGGTGTGT
Statistics
Matches: 417, Mismatches: 22, Indels: 36
0.88 0.05 0.08
Matches are distributed among these distances:
47 1 0.00
48 227 0.54
49 6 0.01
50 43 0.10
51 2 0.00
52 93 0.22
56 1 0.00
57 1 0.00
58 43 0.10
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:102271384 original size:100 final size:98
Alignment explanation
Indices: 102271194--102271688 Score: 733
Period size: 98 Copynumber: 4.9 Consensus size: 98
102271184 TTGATGTATA
102271194 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
102271259 AAAGCCGAATGGCTAATGTG-AA-ATATGTATG
66 AAAGCCGAATGGTTAATGTGAAATATATATATG
* *
102271290 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTATATG
*
102271355 TGGTAAAGCTGAATGGTTAATGTGAAATATATATATATG
62 TGGTAAAGCCGAATGGTTAATGTG-AA-ATATATATATG
* *
102271394 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
102271459 AAAGCCGAATGGTTAATGTGAAATATATATATATATATATG
66 AAAGCCGAATGGTTAATGTG------A-A-ATATATATATG
* *
102271500 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
102271565 AAAGCCGAATGGTCAATGTGAAATATATATATG
66 AAAGCCGAATGGTTAATGTGAAATATATATATG
*
102271598 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
102271663 AAAGCCGAATGGCTAGTGTGAAATAT
66 AAAGCCGAATGGTTAATGTGAAATAT
102271689 GTAGGCGGTG
Statistics
Matches: 365, Mismatches: 20, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
96 36 0.10
98 97 0.27
99 2 0.01
100 87 0.24
101 1 0.00
102 2 0.01
103 1 0.00
104 43 0.12
105 1 0.00
106 95 0.26
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (98 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGTTAATGTGAAATATATATATG
Found at i:102271529 original size:106 final size:100
Alignment explanation
Indices: 102271194--102271688 Score: 732
Period size: 106 Copynumber: 4.9 Consensus size: 100
102271184 TTGATGTATA
*
102271194 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
* *
102271259 AAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
66 AAAGCCGAATGGTTAATGTGAAATATATATATATG
* * *
102271290 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATGCATATG
*
102271355 TGGTAAAGCTGAATGGTTAATGTGAAATATATATATATG
62 TGGTAAAGCCGAATGGTTAATGTGAAATATATATATATG
*
102271394 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
102271459 AAAGCCGAATGGTTAATGTGAAATATATATATATATATATG
66 AAAGCCGAATGGTTAATGTG----A-A-ATATATATATATG
*
102271500 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
*
102271565 AAAGCCGAATGGTCAATGTG-AA-ATATATATATG
66 AAAGCCGAATGGTTAATGTGAAATATATATATATG
* *
102271598 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
* *
102271663 AAAGCCGAATGGCTAGTGTGAAATAT
66 AAAGCCGAATGGTTAATGTGAAATAT
102271689 GTAGGCGGTG
Statistics
Matches: 364, Mismatches: 19, Indels: 28
0.89 0.05 0.07
Matches are distributed among these distances:
96 36 0.10
98 91 0.25
99 4 0.01
100 89 0.24
101 1 0.00
102 2 0.01
103 1 0.00
104 44 0.12
105 1 0.00
106 95 0.26
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (100 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
AAAGCCGAATGGTTAATGTGAAATATATATATATG
Found at i:102271707 original size:98 final size:97
Alignment explanation
Indices: 102271197--102271688 Score: 621
Period size: 100 Copynumber: 4.9 Consensus size: 97
102271187 ATGTATAAGA
102271197 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
1 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
* * *
102271262 GCCGAATGGCTAATGTGAAATATGTATGA-GA
66 GCCGAATGGCTAATGTGAAATATATAAGAGGG
* *
102271293 TATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATGAGATATGTATATGTGG
1 TATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAGATATGTATATGTGG
* * * *
102271358 TAAAGCTGAATGGTTAATGTGAAATATATATATATGAGA
62 TAAAGCCGAATGGCTAATGTGAAATATATA-AGA-G-GG
* *
102271397 TATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAA
1 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
* * *
102271462 GCCGAATGGTTAATGTGAAATATATATATATATATATGAGA
66 GCCGAATGGCTAATGTG----A-A-ATATATA-AGA-G-GG
* *
102271503 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGATAAA
1 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
*
102271568 GCCGAATGG-TCAATGTGAAATATATATATGA-GA
66 GCCGAATGGCT-AATGTGAAATATATA-A-GAGGG
*
102271601 TATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAA
1 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
*
102271666 GCCGAATGGCTAGTGTGAAATAT
66 GCCGAATGGCTAATGTGAAATAT
102271689 GTAGGCGGTG
Statistics
Matches: 360, Mismatches: 19, Indels: 32
0.88 0.05 0.08
Matches are distributed among these distances:
96 33 0.09
98 85 0.24
99 2 0.01
100 103 0.29
101 4 0.01
102 2 0.01
104 35 0.10
105 2 0.01
106 94 0.26
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (97 bp):
TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
GCCGAATGGCTAATGTGAAATATATAAGAGGG
Found at i:102271946 original size:37 final size:37
Alignment explanation
Indices: 102271838--102271946 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
102271828 GGAAATATAT
*
102271838 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
102271875 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
102271912 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
102271947 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:102277044 original size:56 final size:56
Alignment explanation
Indices: 102276966--102277086 Score: 224
Period size: 56 Copynumber: 2.2 Consensus size: 56
102276956 AAAAAAAGAA
*
102276966 AAAGAAAGAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAG
1 AAAGAAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAG
102277022 AAAGAAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAG
1 AAAGAAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAG
*
102277078 AAGGAAAAA
1 AAAGAAAAA
102277087 GAGCTTTGAG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.53, C:0.10, G:0.21, T:0.17
Consensus pattern (56 bp):
AAAGAAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAAAAAG
Found at i:102277981 original size:40 final size:40
Alignment explanation
Indices: 102277876--102278092 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
102277866 GGATTGATAA
* **
102277876 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
102277916 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
102277955 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
102277995 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
102278035 CCGGGCTATGTCCCGAAGGTATTCGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
102278075 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
102278093 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 49 0.31
40 109 0.69
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:102278048 original size:80 final size:79
Alignment explanation
Indices: 102277876--102278053 Score: 293
Period size: 79 Copynumber: 2.2 Consensus size: 79
102277866 GGATTGATAA
* *
102277876 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
102277941 GCGAGTTACCATAT
66 GCGAGTTACCATAT
* *
102277955 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
*
102278020 TGCGAGTTACTATAT
65 TGCGAGTTACCATAT
*
102278035 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
102278054 TATTCGAGTG
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 46 0.50
80 46 0.50
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
GCGAGTTACCATAT
Found at i:102288853 original size:13 final size:13
Alignment explanation
Indices: 102288837--102288869 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
102288827 TCTTTAAACT
*
102288837 TTTTCTTATCAAG
1 TTTTCTTACCAAG
102288850 TTTTCTTACCAAG
1 TTTTCTTACCAAG
102288863 TTTTCTT
1 TTTTCTT
102288870 TCTTGGAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.58
Consensus pattern (13 bp):
TTTTCTTACCAAG
Found at i:102290021 original size:21 final size:20
Alignment explanation
Indices: 102289990--102290029 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
102289980 CCCTTGAAAT
*
102289990 AGGGCACACGCCTGTGTGGA
1 AGGGCACACGCCCGTGTGGA
102290010 AGGGCAACACGCCCGTGTGG
1 AGGGC-ACACGCCCGTGTGG
102290030 CCACTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGA
Found at i:102291335 original size:48 final size:46
Alignment explanation
Indices: 102291169--102291391 Score: 179
Period size: 48 Copynumber: 4.7 Consensus size: 46
102291159 AGGATATAAT
* * *
102291169 GCCGATGCCATGTCCCAGACATGGTTTTACACT-AGCTCATC-CATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACATCTC--CTA
* * * * * *
102291216 GTCAATGCTATGTCCCAGACGTGGTCTTACACTAGCTCTTACATATCC-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-AC--ACATCTCCTA
* * *
102291265 TGCCGATGCAATGTCCCAGACATGGTCTTAAACTGACACCTCTATACCT-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC--T-CCTA
* *
102291314 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCCTA
102291360 GCCGATG-CATGTCCCAGACAT-GTCTTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
102291392 GCTTACATAT
Statistics
Matches: 142, Mismatches: 22, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 10 0.07
47 28 0.20
48 39 0.27
49 5 0.04
50 29 0.20
51 3 0.02
52 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCCTA
Found at i:102291434 original size:46 final size:46
Alignment explanation
Indices: 102291363--102291468 Score: 124
Period size: 46 Copynumber: 2.3 Consensus size: 46
102291353 TCTCGTAGCC
* * * *
102291363 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATATCGAGGCT
1 GATGCATGTCCCAAACATGTATTACACTAGCTCT-CATATCAAGGCT
* * *
102291409 GATGCATGTCCCAAATATGTATTACACTAGCTCTCATCTCAATGCT
1 GATGCATGTCCCAAACATGTATTACACTAGCTCTCATATCAAGGCT
102291455 GATGCCATGTCCCA
1 GATG-CATGTCCCA
102291469 GACTTGGTCT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
46 41 0.80
47 10 0.20
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAAACATGTATTACACTAGCTCTCATATCAAGGCT
Found at i:102291508 original size:94 final size:92
Alignment explanation
Indices: 102291363--102291533 Score: 211
Period size: 94 Copynumber: 1.8 Consensus size: 92
102291353 TCTCGTAGCC
** *
102291363 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCTGATGCATGTCCCAAATATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAACATG
102291428 TATTACACTAGCTCTCATCTCAATGCT
66 TATTACACTAGCTCTCATCTCAATGCT
* * * *
102291455 GATGCCATGTCCCAGACTTGGTCTTACAGTGGCTCT-CATAAT-GTGGCCAATGCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCATGTCCCAAA
* *
102291518 CATGTCTTGCACTAGC
62 CATGTATTACACTAGC
102291534 ACACAAATAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
92 4 0.06
93 13 0.20
94 46 0.70
95 3 0.05
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCAATGCATGTCCCAAACATG
TATTACACTAGCTCTCATCTCAATGCT
Found at i:102295254 original size:46 final size:45
Alignment explanation
Indices: 102295122--102295382 Score: 208
Period size: 46 Copynumber: 5.6 Consensus size: 45
102295112 GGTATAATGT
* * *
102295122 CGATGCCATGTCCCAAACATGGTCTTACACTGACACCTC-TATACGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTTCTA-G-GC
*
102295170 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTTCTAGGC
* * * * *
102295216 CGATGCATGGCTCAGACATGTCTTACACTGGCTTACATCAT-GAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTTCTAGGC
* * * * * * *
102295262 TGAGGCATTTCCCAGACATGTCTTACACTAGCTCTCATC-TCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACT-G-ACACATCTTCTAGGC
* * *
102295308 TGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCCTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTTCTAGGC
102295354 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
102295383 AGCTCTCGTC
Statistics
Matches: 177, Mismatches: 26, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
44 22 0.12
45 27 0.15
46 61 0.34
47 16 0.09
48 48 0.27
49 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACACATCTTCTAGGC
Found at i:102295313 original size:92 final size:92
Alignment explanation
Indices: 102295117--102295434 Score: 283
Period size: 92 Copynumber: 3.4 Consensus size: 92
102295107 CATAGGGTAT
* * * * * * *
102295117 AATGTCGATGCCATGTCCCAAACATGGTCTTACACTGAC-ACCTCTATACGTGCCGATGCCATGT
1 AATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTACATC--T-CGAGCCGA-GGCATGT
* *
102295181 CCCAGACATGGTCTTACACT-G-ACACATCT-
62 CCCAGACAT-GTCTTACACTAGCTCTCATCTC
** * * *
102295210 TGTAGCCGATG-CATGGCTCAGACAT-GTCTTACACTGGCTTACATCAT-GAGGCTGAGGCATTT
1 AAT-GCCGATGCCATGTCTCAGACATGGTCTTACACTGGC-TACATC-TCGA-GCCGAGGCATGT
102295272 CCCAGACATGTCTTACACTAGCTCTCATCTC
62 CCCAGACATGTCTTACACTAGCTCTCATCTC
* * * * * *
102295303 AATGCTGATGCCATGTCCCAAACATGGTCTTACACTGAC-ACATCTCCTAGCCGATGCATGTCCC
1 AATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTACATCT-CGAGCCGAGGCATGTCCC
*
102295367 AGACATGTCTTACACTAGCTCTCGTCTC
65 AGACATGTCTTACACTAGCTCTCATCTC
* *
102295395 AATTCCGATGCCATGTCTCAGACATGGGCTTACACTGGCT
1 AATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCT
102295435 CTTATAATGT
Statistics
Matches: 181, Mismatches: 32, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
90 10 0.06
91 17 0.09
92 105 0.58
93 27 0.15
94 22 0.12
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
AATGCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTACATCTCGAGCCGAGGCATGTCCCA
GACATGTCTTACACTAGCTCTCATCTC
Found at i:102295457 original size:47 final size:46
Alignment explanation
Indices: 102295122--102295477 Score: 143
Period size: 46 Copynumber: 7.7 Consensus size: 46
102295112 GGTATAATGT
* * **
102295122 CGATGCCATGTCCCAAACATGGTCTTACACT-GACACCTCTAT-ACGTGC
1 CGATG-CATGTCCCAGACATGG-CTTACACTAG-C-TCTCTATCAATTGC
* * *
102295170 CGATGCCATGTCCCAGACATGGTCTTACACT-GACACATCT-T--GTAGC
1 CGATG-CATGTCCCAGACATGG-CTTACACTAG-CTC-TCTATCAATTGC
* * * * *
102295216 CGATGCATGGCTCAGACATGTCTTACACTGGCT-TAC-ATC-ATGAGGC
1 CGATGCATGTCCCAGACATGGCTTACACTAGCTCT-CTATCAAT--TGC
* * * * *
102295262 TGAGGCATTTCCCAGACATGTCTTACACTAGCTCTCATCTCAA-TGC
1 CGATGCATGTCCCAGACATGGCTTACACTAGCTCTC-TATCAATTGC
* * * * *
102295308 TGATGCCATGTCCCAAACATGGTCTTACACT-GACACATC--TC-CTAGC
1 CGATG-CATGTCCCAGACATGG-CTTACACTAG-CTC-TCTATCAATTGC
* *
102295354 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATT-C
1 CGATGCATGTCCCAGACATGGCTTACACTAGCTCTC-TATCAATTGC
* *
102295400 CGATGCCATGTCTCAGACATGGGCTTACACTGGCTCT-TAT-AATGTGGC
1 CGATG-CATGTCCCAGACAT-GGCTTACACTAGCTCTCTATCAAT-T-GC
* * *
102295448 CGATGCATGTCCTAGGCATGTCTTACACTA
1 CGATGCATGTCCCAGACATGGCTTACACTA
102295478 TCACACAAAT
Statistics
Matches: 241, Mismatches: 41, Indels: 54
0.72 0.12 0.16
Matches are distributed among these distances:
42 1 0.00
43 4 0.02
44 20 0.08
45 32 0.13
46 71 0.29
47 42 0.17
48 68 0.28
49 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGGCTTACACTAGCTCTCTATCAATTGC
Found at i:102295470 original size:186 final size:184
Alignment explanation
Indices: 102295123--102295477 Score: 434
Period size: 186 Copynumber: 1.9 Consensus size: 184
102295113 GTATAATGTC
*
102295123 GATGCCATGTCCCAAACATGGTCTTACACTGACACCTCTATACGTGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGACACATCTATAC--GCCGATGCCATGTCCCAGAC
** *
102295188 ATGGTCTTACACTGACACATCTTGTAGCCGATGCATGGCTCAGACATGTCTTACACTGGCTTACA
64 ATGGTCTTACACTGACACATCTTCAAGCCGATGCATGGCTCAGACATGGCTTACACTGGCTTACA
* * *
102295253 TCATGAGGCTGAGGCATTTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCT
129 TAATGAGGCCGAGGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCT
*
102295309 GATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCCTA-GCCGATG-CATGTCCCAGACA
1 GATGCCATGTCCCAAACATGGTCTTACACTGACACATCT-ATACGCCGATGCCATGTCCCAGACA
* * *
102295372 T-GTCTTACACT-AGCTC-TCGTCTCAATTCCGATGCCATGTCTCAGACATGGGCTTACACTGGC
65 TGGTCTTACACTGA-CACATC-T-TCAA-GCCGATG-CATGGCTCAGACAT-GGCTTACACTGGC
* * * * *
102295434 TCT-TATAATGTGGCCGATGCATGTCCTAGGCATGTCTTACACTA
124 T-TACATAATGAGGCCGAGGCATGTCCCAGACATGTCTTACACTA
102295478 TCACACAAAT
Statistics
Matches: 145, Mismatches: 16, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
181 3 0.02
182 13 0.09
183 16 0.11
184 13 0.09
185 13 0.09
186 84 0.58
187 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (184 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGACACATCTATACGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGACACATCTTCAAGCCGATGCATGGCTCAGACATGGCTTACACTGGCTTACATA
ATGAGGCCGAGGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCT
Found at i:102295471 original size:138 final size:139
Alignment explanation
Indices: 102295122--102295476 Score: 375
Period size: 138 Copynumber: 2.6 Consensus size: 139
102295112 GGTATAATGT
* * * *
102295122 CGATGCCATGTCCCAAACATGGTCTTACACTGACACCTCTATACGTGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCTATAAGTGCCGATGCCATGTCCCAGA
** * *
102295187 CATGGTCTTACACTGACACATCTTGTAGCCGATGCATGGCTCAGACATGTCTTACACTGGCTTAC
65 CATGGTCTTACACTGACACATCTCCTAGCCGATGCATGGCCCAGACATGTCTTACACTAGCTTAC
*
102295252 ATCATGAGGC
130 ATCATAAGGC
* * * * * * *
102295262 TGA-GGCATTTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAA-TGCTGATGCCATGTCCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TAT-AAGTGCCGATGCCATGTCCCAG
*
102295324 ACATGGTCTTACACTGACACATCTCCTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
64 ACATGGTCTTACACTGACACATCTCCTAGCCGATGCATGGCCCAGACATGTCTTACACTAGCT-T
* **
102295389 -CGTC-TCAATTC
128 ACATCAT-AAGGC
* * *
102295400 CGATGCCATGTCTCAGACATGGGCTTACACTGGCTCT-TATAATGTGGCCGATG-CATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTATAA-GT-GCCGATGCCATGTCCCAG
*
102295463 GCAT-GTCTTACACT
64 ACATGGTCTTACACT
102295477 ATCACACAAA
Statistics
Matches: 175, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
137 6 0.03
138 107 0.61
139 40 0.23
140 22 0.13
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (139 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTATAAGTGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACACATCTCCTAGCCGATGCATGGCCCAGACATGTCTTACACTAGCTTACA
TCATAAGGC
Found at i:102299878 original size:20 final size:20
Alignment explanation
Indices: 102299853--102299896 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
102299843 AACAGGGGTC
102299853 ACACACCCGTGTGGTTTGGA
1 ACACACCCGTGTGGTTTGGA
*
102299873 ACACACCCGTGTGGTTTGGG
1 ACACACCCGTGTGGTTTGGA
102299893 ACAC
1 ACAC
102299897 GCATGTATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (20 bp):
ACACACCCGTGTGGTTTGGA
Found at i:102321107 original size:39 final size:40
Alignment explanation
Indices: 102321009--102321110 Score: 120
Period size: 39 Copynumber: 2.6 Consensus size: 40
102320999 AGCTCGCATA
* * *
102321009 AGGAACTTCTCTAATACACAAATTACCCTTAGCTCTCAGG
1 AGGAGCTTTTCTAATACACAACTTACCCTTAGCTCTCAGG
* *
102321049 -GGAGCTTTGTC-GATACACAACTTATCCTTAGCTCTC-GG
1 AGGAGCTTT-TCTAATACACAACTTACCCTTAGCTCTCAGG
*
102321087 AGGAGCTTTTCTAATGCACAACTT
1 AGGAGCTTTTCTAATACACAACTT
102321111 TTAGAATAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
38 4 0.08
39 46 0.88
40 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (40 bp):
AGGAGCTTTTCTAATACACAACTTACCCTTAGCTCTCAGG
Found at i:102327652 original size:42 final size:42
Alignment explanation
Indices: 102327593--102327676 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
102327583 AAGAAGAAGA
*
102327593 TAAAAAGTTATCCTAGAAATGGCGCGTCAATGCTTTGAAATC
1 TAAAAAGTTATCCTAGAAATGGCGCATCAATGCTTTGAAATC
*
102327635 TAAAAAGTTATCCTAGAAATGGTGCATCAATGCTTTGAAATC
1 TAAAAAGTTATCCTAGAAATGGCGCATCAATGCTTTGAAATC
102327677 ACTATTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (42 bp):
TAAAAAGTTATCCTAGAAATGGCGCATCAATGCTTTGAAATC
Found at i:102342601 original size:11 final size:11
Alignment explanation
Indices: 102342565--102342592 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
102342555 AATTTACATA
102342565 TTATAAAATTT
1 TTATAAAATTT
102342576 TTATAAAATTT
1 TTATAAAATTT
102342587 TTATAA
1 TTATAA
102342593 TATATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TTATAAAATTT
Found at i:102344613 original size:13 final size:13
Alignment explanation
Indices: 102344595--102344619 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102344585 CTCACTTAAC
102344595 CATTAAATTTTTG
1 CATTAAATTTTTG
102344608 CATTAAATTTTT
1 CATTAAATTTTT
102344620 AATAATATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (13 bp):
CATTAAATTTTTG
Found at i:102348095 original size:47 final size:47
Alignment explanation
Indices: 102348035--102348302 Score: 196
Period size: 49 Copynumber: 5.7 Consensus size: 47
102348025 ACAATAGCCT
* *
102348035 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATGAGTA-CCA
1 GTGTAAGACCATGTCTGGGACAT-GCATCGGCCTA-AGATGAGTAGCTA
* *
102348083 GTGTAAGA-CATGTCTGAGACATACATCGGCCTCAATGATG-GTAGCTA
1 GTGTAAGACCATGTCTGGGACATGCATCGGCCT-AA-GATGAGTAGCTA
* * * * * *
102348130 GTGTAA-AACGTGTCTTGGACATGCATC-GACTAAGCTTCA-T-GCTA
1 GTGTAAGACCATGTCTGGGACATGCATCGGCCTAAG-ATGAGTAGCTA
* * * *
102348174 GTGTAAGA-CATGTCTAGGACATGCATCAGCTCTTATACACGAG-AGCTA
1 GTGTAAGACCATGTCTGGGACATGCATCGGC-C-TA-AGATGAGTAGCTA
* * * *
102348222 ATGTAAGACCATGTCTGAGACATGGCATCGGCCT-CGATGAAGATAGCCA
1 GTGTAAGACCATGTCTGGGACAT-GCATCGGCCTAAGATG-AG-TAGCTA
102348271 GTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GTGTAAGACCATGTCTGGGACAT-GCATCGGC
102348303 AACTTAACCC
Statistics
Matches: 174, Mismatches: 28, Indels: 35
0.73 0.12 0.15
Matches are distributed among these distances:
44 28 0.16
45 6 0.03
46 19 0.11
47 46 0.26
48 21 0.12
49 47 0.27
50 7 0.04
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGCATCGGCCTAAGATGAGTAGCTA
Found at i:102351263 original size:14 final size:15
Alignment explanation
Indices: 102351246--102351276 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
102351236 AAGTGACTTG
102351246 GATAA-ATCGTCTAT
1 GATAATATCGTCTAT
102351260 GATAATATCGTCTAT
1 GATAATATCGTCTAT
102351275 GA
1 GA
102351277 ACGCTGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (15 bp):
GATAATATCGTCTAT
Found at i:102355625 original size:47 final size:44
Alignment explanation
Indices: 102355455--102355724 Score: 168
Period size: 47 Copynumber: 5.8 Consensus size: 44
102355445 ATGGGGTTAT
* *
102355455 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAG
1 ATGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--TAAG
* * * * ** * *
102355503 ATGAGGGCTAGTGTAAGACGTGTCTAGGACATGCATAAGCCACATT
1 ATGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTA-A-G
* * * *
102355549 ACT-A-TAGCCTGTGTAAAACCATGTTTGGGACATGGCATCGGTGTAGAG
1 A-TGAGT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTA-AG
*
102355597 ATGAGTGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCCTCAATG
1 ATGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CT-AA-G
* * *
102355644 ATG-GTAGCCAGTGTAGGACGTGCCTGGGACATGCATCGGCTAAG
1 ATGAGT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAG
* ** * *
102355688 CTTCGTGCTAGTGTAAGACATGACTGGGACATGCATC
1 ATGAGTGCCAGTGTAAGACATGTCTGGGACATGCATC
102355725 AGCTCTTATA
Statistics
Matches: 173, Mismatches: 36, Indels: 30
0.72 0.15 0.13
Matches are distributed among these distances:
44 29 0.17
45 5 0.03
46 30 0.17
47 73 0.42
48 33 0.19
49 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (44 bp):
ATGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAG
Found at i:102355672 original size:94 final size:93
Alignment explanation
Indices: 102355460--102355776 Score: 291
Period size: 94 Copynumber: 3.4 Consensus size: 93
102355450 GTTATATGAG
* *
102355460 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-ATAGAGATGAGTGCTAGTGTAAGACGTG
* * *
102355525 TCTAGGACATGCATAAGCCACATTACTAT
65 TCTGGGACATGCATCAGCCACATGACTAT
* * * * *
102355554 AGCCTGTGTAAAACCATGTTTGGGACATGGCATCGGTGTAGAGATGAGTGCCAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-ATAGAGATGAGTGCTAGTGTAAGACGTG
* * *
102355619 TCTGGGACATGCATCGGCCTCAATGA-TGGT
65 TCTGGGACATGCATCAGCCAC-ATGACT-AT
* * * * * ** * *
102355649 AGCCAGTGTAGGA-CGTGCCTGGGACAT-GCATCGGCTA-AGCTTCGTGCTAGTGTAAGACATGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGATAGAGATGAGTGCTAGTGTAAGACGTGT
** * * *
102355711 CTGGGACATGCATCAGCTCTTATACACGAG
66 CTGGGACATGCATCAGC-CACAT-GACTAT
* *
102355741 AGCTAATGTAAGACCATGTCTGGGACATGGCATCGG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
102355777 TAACTTAACC
Statistics
Matches: 178, Mismatches: 38, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
91 37 0.21
92 15 0.08
93 19 0.11
94 93 0.52
95 14 0.08
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGATAGAGATGAGTGCTAGTGTAAGACGTGT
CTGGGACATGCATCAGCCACATGACTAT
Found at i:102356621 original size:55 final size:54
Alignment explanation
Indices: 102356516--102356635 Score: 159
Period size: 55 Copynumber: 2.2 Consensus size: 54
102356506 ACTTAAAATT
* *
102356516 TTAAGTTAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGTC
1 TTAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCC
* * ** *
102356570 TATAAGTCAGTTTTGTCCACGGGTAGGCCACACGGGTGTGTGTTATGGCCGTGCC
1 T-TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCC
102356625 TTAAAGTCAGT
1 TT-AAGTCAGT
102356636 GTTGCACAAG
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
54 2 0.04
55 55 0.96
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (54 bp):
TTAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCC
Found at i:102357623 original size:13 final size:13
Alignment explanation
Indices: 102357607--102357636 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
102357597 AAAATAGTTG
*
102357607 ATAAATAAATACA
1 ATAAAGAAATACA
102357620 ATAAAGAAATACA
1 ATAAAGAAATACA
102357633 ATAA
1 ATAA
102357637 TAATAGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (13 bp):
ATAAAGAAATACA
Found at i:102357674 original size:11 final size:11
Alignment explanation
Indices: 102357627--102357684 Score: 57
Period size: 11 Copynumber: 5.2 Consensus size: 11
102357617 ACAATAAAGA
*
102357627 AATACAATAAT
1 AATATAATAAT
*
102357638 AATAGTAATAGT
1 AATA-TAATAAT
102357650 AATATAA-AATT
1 AATATAATAA-T
102357661 AATGAT-ATAAT
1 AAT-ATAATAAT
102357672 AATATAATAAT
1 AATATAATAAT
102357683 AA
1 AA
102357685 GAATAAAAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 3 0.08
11 23 0.59
12 13 0.33
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (11 bp):
AATATAATAAT
Found at i:102359211 original size:40 final size:40
Alignment explanation
Indices: 102359167--102359276 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
102359157 TTCACAATTT
* *
102359167 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
102359207 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
102359247 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
102359277 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:102363227 original size:46 final size:46
Alignment explanation
Indices: 102363062--102363330 Score: 171
Period size: 46 Copynumber: 5.7 Consensus size: 46
102363052 TCATTTGTGT
* * *
102363062 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCATATTATG--G-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-AGCAT-TGA-GACGA
*
102363108 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATTGAGACGA
* * * *
102363156 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGGGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACG-A
* * * *
102363203 -AGCCAGTATTAGACATGTCTGGGACATGTATCGGC--T-ACGA-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGA-GACGA
* * * *
102363245 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGTT-ATG-TGA
1 -GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAG--CA-TTGA-GACGA
*
102363296 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
102363331 GGTCTCGAAG
Statistics
Matches: 181, Mismatches: 25, Indels: 30
0.77 0.11 0.13
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 12 0.07
45 15 0.08
46 64 0.35
47 34 0.19
48 17 0.09
50 32 0.18
51 5 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACGA
Found at i:102365793 original size:27 final size:27
Alignment explanation
Indices: 102365763--102365958 Score: 196
Period size: 27 Copynumber: 7.3 Consensus size: 27
102365753 CTTGGTTTAC
*
102365763 AAAATTACCAAAATACCCTCAATTAGT
1 AAAATTACCAAAATACCCTCAATTTGT
**
102365790 AAAATTACCAAAATATCCCT-GGTTTGT
1 AAAATTACCAAAATA-CCCTCAATTTGT
**
102365817 AAAATTACCAAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCTCAATTTGT
* * ** **
102365844 GAAATTATCAAAATACCCTTGACCTGT
1 AAAATTACCAAAATACCCTCAATTTGT
* * *
102365871 AAAATTACCGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCAATTTGT
* * *
102365898 GAAATTACTAAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCAATTTGT
* **
102365925 AAAATTACCAAAATACCCTTAATTTAC
1 AAAATTACCAAAATACCCTCAATTTGT
102365952 AAAATTA
1 AAAATTA
102365959 TAGAAATACC
Statistics
Matches: 144, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
26 4 0.03
27 136 0.94
28 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCAATTTGT
Found at i:102365824 original size:54 final size:52
Alignment explanation
Indices: 102365763--102365948 Score: 219
Period size: 54 Copynumber: 3.5 Consensus size: 52
102365753 CTTGGTTTAC
* *
102365763 AAAATTACCAAAATACCCTCAATTAGTAAAATTACCAAAATATCCCTGGTTTGT
1 AAAATTACCAAAATACCCTCAATT-GTGAAATTACCAAAATA-CCCTGATTTGT
* * * **
102365817 AAAATTACCAAAATACCCTTGATTTGTGAAATTATCAAAATACCCTTGACCTGT
1 AAAATTACCAAAATACCC-TCAATTGTGAAATTACCAAAATACCC-TGATTTGT
* * *
102365871 AAAATTACCGAAATACCCTCGACTTGTGAAATTACTAAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCTC-AATTGTGAAATTACCAAAATACCCT-GATTTGT
*
102365925 AAAATTACCAAAATACCCTTAATT
1 AAAATTACCAAAATACCCTCAATT
102365949 TACAAAATTA
Statistics
Matches: 111, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
53 8 0.07
54 99 0.89
55 4 0.04
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTCAATTGTGAAATTACCAAAATACCCTGATTTGT
Found at i:102365956 original size:81 final size:79
Alignment explanation
Indices: 102365737--102366025 Score: 251
Period size: 81 Copynumber: 3.6 Consensus size: 79
102365727 TTTGGCTTAC
* * * ** * *
102365737 AAAATTACT-GAATTCCCTTGGTTTACAAAATTACCAAAATACCCTCAATTAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTTAATTA-TAAAATTACCGA
**
102365801 AATATCCCTGGTTTGT
65 AATA-CCCTGACTTGT
* * * ** *
102365817 AAAATTACCAAAATACCCTTGATTTGTGAAATTATCAAAATACCCTTGACCTGTAAAATTACCGA
1 AAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTT-AATTATAAAATTACCGA
102365882 AATACCCTCGACTTGT
65 AATACCCT-GACTTGT
* * * **
102365898 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTTAATTTACAAAATTATAGA
1 AAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTTAA-TTATAAAATTACCGA
* **
102365963 AATACCTTTGACTTCCA
65 AATACC-CTGACTT-GT
* * *
102365980 AAAATTA-TAGAAATACCATTGGTTTGCAAAATTACC-AAATACCCTT
1 AAAATTACTA-AAATACCCTTGATTTGTAAAATTACCAAAATACCCTT
102366026 GGTTTGTAGA
Statistics
Matches: 168, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
80 13 0.08
81 124 0.74
82 31 0.18
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (79 bp):
AAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTTAATTATAAAATTACCGAA
ATACCCTGACTTGT
Found at i:102365965 original size:27 final size:28
Alignment explanation
Indices: 102365935--102365996 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
102365925 AAAATTACCA
*
102365935 AAATACCCTTAATTTAC-AAAATTATAG
1 AAATACCCTTAACTTACAAAAATTATAG
* * *
102365962 AAATACCTTTGACTTCCAAAAATTATAG
1 AAATACCCTTAACTTACAAAAATTATAG
102365990 AAATACC
1 AAATACC
102365997 ATTGGTTTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 13 0.43
28 17 0.57
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.31
Consensus pattern (28 bp):
AAATACCCTTAACTTACAAAAATTATAG
Found at i:102366009 original size:28 final size:27
Alignment explanation
Indices: 102365951--102366031 Score: 83
Period size: 28 Copynumber: 3.0 Consensus size: 27
102365941 CCTTAATTTA
* ** *
102365951 CAAAATTATAGAAATACCTTTGACTTC
1 CAAAATTATAGAAATACCATTGGTTTG
102365978 CAAAAATTATAGAAATACCATTGGTTTG
1 C-AAAATTATAGAAATACCATTGGTTTG
** *
102366006 CAAAATTA-CCAAATACCCTTGGTTTG
1 CAAAATTATAGAAATACCATTGGTTTG
102366032 TAGATTTACC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 15 0.33
27 8 0.17
28 23 0.50
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (27 bp):
CAAAATTATAGAAATACCATTGGTTTG
Found at i:102366040 original size:26 final size:27
Alignment explanation
Indices: 102365751--102366053 Score: 191
Period size: 27 Copynumber: 11.2 Consensus size: 27
102365741 TTACTGAATT
*
102365751 CCCTTGGTTTACAAAATTACCAAAATA
1 CCCTTGGTTTGCAAAATTACCAAAATA
*** * *
102365778 CCCTCAATTAGTAAAATTACCAAAATA
1 CCCTTGGTTTGCAAAATTACCAAAATA
*
102365805 TCCC-TGGTTTGTAAAATTACCAAAATA
1 -CCCTTGGTTTGCAAAATTACCAAAATA
* ** *
102365832 CCCTTGATTTGTGAAATTATCAAAATA
1 CCCTTGGTTTGCAAAATTACCAAAATA
*** * *
102365859 CCCTTGACCTGTAAAATTACCGAAATA
1 CCCTTGGTTTGCAAAATTACCAAAATA
* ** ** *
102365886 CCCTCGACTTGTGAAATTACTAAAATA
1 CCCTTGGTTTGCAAAATTACCAAAATA
* * *
102365913 CCCTCGATTTGTAAAATTACCAAAATA
1 CCCTTGGTTTGCAAAATTACCAAAATA
** * *
102365940 CCCTTAATTTACAAAATTA-TAGAAATA
1 CCCTTGGTTTGCAAAATTACCA-AAATA
* ** * *
102365967 CCTTTGACTTCCAAAAATTA-TAGAAATA
1 CCCTTGGTTTGC-AAAATTACCA-AAATA
*
102365995 CCATTGGTTTGCAAAATTACC-AAATA
1 CCCTTGGTTTGCAAAATTACCAAAATA
* * * *
102366021 CCCTTGGTTTGTAGATTTACCAAAACA
1 CCCTTGGTTTGCAAAATTACCAAAATA
102366048 CCCTTG
1 CCCTTG
102366054 TAGGGTGAAA
Statistics
Matches: 225, Mismatches: 45, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
26 26 0.12
27 173 0.77
28 26 0.12
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
CCCTTGGTTTGCAAAATTACCAAAATA
Found at i:102366372 original size:40 final size:41
Alignment explanation
Indices: 102366291--102366412 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
102366281 GGAGGAAGAA
*
102366291 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCAACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
102366332 ATTGAGGATCACATGATTGCTTG-CGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * *
102366372 ATTAAGGATTGCATGGTTGCTTGACGACCATGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
102366413 GTGGCTTGTA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 35 0.49
41 37 0.51
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:102366604 original size:22 final size:22
Alignment explanation
Indices: 102366552--102366616 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
102366542 GCCAATTATT
* *
102366552 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
102366574 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
102366596 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
102366617 ACGTATTTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:102368358 original size:44 final size:45
Alignment explanation
Indices: 102368231--102368360 Score: 169
Period size: 44 Copynumber: 2.9 Consensus size: 45
102368221 AGGACTTGTC
* *
102368231 GCTTCAATCTACTCCACTACAACTTCATA-GAGATAAGA-TC-TGTA
1 GCTTTAATCTACTCCACTGCAACTTCA-AGGAGATAAGATTCATG-A
* *
102368275 GCTTTAATCTACTCCACTGTAACTTCAGGGAGATAAGATTCATG-
1 GCTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGATTCATGA
*
102368319 GCTTTAGTCTACTCCACTGCAACTTCAAGGAGATAAGATTCA
1 GCTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGATTCA
102368361 CCATGATAAC
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
44 72 0.95
45 2 0.03
46 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (45 bp):
GCTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGATTCATGA
Found at i:102382233 original size:4 final size:4
Alignment explanation
Indices: 102382226--102382261 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
102382216 TTTAGAAAGA
*
102382226 AATT AATT AACT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT
102382262 TCAATATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (4 bp):
AATT
Found at i:102382993 original size:27 final size:27
Alignment explanation
Indices: 102382963--102383036 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
102382953 ATAGGTGGTG
*
102382963 CCTATCTGGTAGGCGCCACTGGTGACT
1 CCTATCTGATAGGCGCCACTGGTGACT
* **
102382990 CCTATCTAATAGGCATCACTGGTGACT
1 CCTATCTGATAGGCGCCACTGGTGACT
*
102383017 CCTATCTGATAGGCGGCACT
1 CCTATCTGATAGGCGCCACT
102383037 AATGTTTAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.27
Consensus pattern (27 bp):
CCTATCTGATAGGCGCCACTGGTGACT
Found at i:102383225 original size:19 final size:19
Alignment explanation
Indices: 102383203--102383257 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
102383193 AATTGAGAGT
102383203 TTTGTTAGTAATTTTGTTA
1 TTTGTTAGTAATTTTGTTA
** *
102383222 TTTGAAAGTTATTTTGTTA
1 TTTGTTAGTAATTTTGTTA
* *
102383241 --GGTTATTAATTTTGTTA
1 TTTGTTAGTAATTTTGTTA
102383258 GCTTCTGAAT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 12 0.43
19 16 0.57
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (19 bp):
TTTGTTAGTAATTTTGTTA
Found at i:102386874 original size:75 final size:74
Alignment explanation
Indices: 102386751--102386926 Score: 232
Period size: 75 Copynumber: 2.4 Consensus size: 74
102386741 TTATATAAAT
* * * * * **
102386751 AATACAAATTTTACTATTTAAATTGCAAAAAACCCCTAAAATTAATAACTAAAATGGCGAAAAAG
1 AATACAAAGTTGA-TATTTAAATTACAAAAAAACCCTAAAATTAATAACTAAAATCGAAAAAAAG
102386816 TCATTACATA
65 TCATTACATA
102386826 AATACAAAGTTGATTATTTAAATTACAAAAAAACCCTAAAATTAATAACTAAAATCGAAAAAAAG
1 AATACAAAGTTGA-TATTTAAATTACAAAAAAACCCTAAAATTAATAACTAAAATCGAAAAAAAG
*
102386891 TCATTATATA
65 TCATTACATA
*
102386901 AATATAAAGTTG---TTTAAATTACAAAA
1 AATACAAAGTTGATATTTAAATTACAAAA
102386927 CCCCCTGAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
71 14 0.15
75 77 0.85
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.29
Consensus pattern (74 bp):
AATACAAAGTTGATATTTAAATTACAAAAAAACCCTAAAATTAATAACTAAAATCGAAAAAAAGT
CATTACATA
Found at i:102387049 original size:33 final size:33
Alignment explanation
Indices: 102387007--102387214 Score: 163
Period size: 33 Copynumber: 6.3 Consensus size: 33
102386997 TGGTCCTAGG
*
102387007 CGGTGGATACTGGCCGGGAGGAGTAGAGTACAA
1 CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
* * ** * * * *
102387040 CGGTGGATACAGACCAAGAGGAGTGGAATATGG
1 CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
* *
102387073 CGGTGGATA-TGGGTCTGGAGGAGTAGAGTACGA
1 CGGTGGATACT-GGCCGGGAGGAGTAGAGTACGA
* *
102387106 CGGTGGATACGGGCCTGGAGGAGTAGAGTACGA
1 CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
* * * * * * *
102387139 CGATAGATACAGTCCGAGAGGAGTGGAGTA-TA
1 CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
*
102387171 GCAGTGGATA-TGGGCCGGGAGGAGTAGAGTACTGA
1 -CGGTGGATACT-GGCCGGGAGGAGTAGAGTAC-GA
102387206 -GGTGGATAC
1 CGGTGGATAC
102387215 GAGTCGAAAT
Statistics
Matches: 131, Mismatches: 37, Indels: 13
0.72 0.20 0.07
Matches are distributed among these distances:
32 1 0.01
33 129 0.98
35 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.42, T:0.17
Consensus pattern (33 bp):
CGGTGGATACTGGCCGGGAGGAGTAGAGTACGA
Found at i:102387178 original size:99 final size:100
Alignment explanation
Indices: 102387007--102387215 Score: 296
Period size: 99 Copynumber: 2.1 Consensus size: 100
102386997 TGGTCCTAGG
* * * *
102387007 CGGTGGATACTGGCCGGGAGGAGTAGAGTACAACGGTGGATACAGACCAAGAGGAGTGGAATATG
1 CGGTGGATACGGGCCGGGAGGAGTAGAGTACAACGATAGATACAGACCAAGAGGAGTGGAATATA
* * *
102387072 GCGGTGGATATGGGTCTGGAGGAGTAGAGTAC-GA
66 GCAGTGGATATGGGCCGGGAGGAGTAGAGTACTGA
* * * * *
102387106 CGGTGGATACGGGCCTGGAGGAGTAGAGTACGACGATAGATACAGTCCGAGAGGAGTGGAGTATA
1 CGGTGGATACGGGCCGGGAGGAGTAGAGTACAACGATAGATACAGACCAAGAGGAGTGGAATATA
102387171 GCAGTGGATATGGGCCGGGAGGAGTAGAGTACTGA
66 GCAGTGGATATGGGCCGGGAGGAGTAGAGTACTGA
102387206 -GGTGGATACG
1 CGGTGGATACG
102387216 AGTCGAAATG
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 95 0.98
100 2 0.02
ACGTcount: A:0.28, C:0.12, G:0.43, T:0.17
Consensus pattern (100 bp):
CGGTGGATACGGGCCGGGAGGAGTAGAGTACAACGATAGATACAGACCAAGAGGAGTGGAATATA
GCAGTGGATATGGGCCGGGAGGAGTAGAGTACTGA
Found at i:102387234 original size:66 final size:66
Alignment explanation
Indices: 102387108--102387234 Score: 150
Period size: 66 Copynumber: 1.9 Consensus size: 66
102387098 GAGTACGACG
* * * *
102387108 GTGGATACGGGCCTGGAGGAGTAGAGTACGACGATAGATACAGTCCGAGAGGAGTGGAGTATAGC
1 GTGGATACGGGCCGGGAGGAGTAGAGTACGACGATAGATACAGTCCGAAAGGACTAGAGTATAGC
102387173 A
66 A
* * * *
102387174 GTGGATATGGGCCGGGAGGAGTAGAGTACTGA-GGTGGATACGAGT-CGAAATGACTAGAGTA
1 GTGGATACGGGCCGGGAGGAGTAGAGTAC-GACGATAGATAC-AGTCCGAAAGGACTAGAGTA
102387235 CTGAGATGGT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
66 46 0.90
67 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.40, T:0.18
Consensus pattern (66 bp):
GTGGATACGGGCCGGGAGGAGTAGAGTACGACGATAGATACAGTCCGAAAGGACTAGAGTATAGC
A
Found at i:102387657 original size:13 final size:13
Alignment explanation
Indices: 102387639--102387669 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
102387629 TAATTTTAAA
102387639 ACACGGCCATGAC
1 ACACGGCCATGAC
102387652 ACACGGCCATGAC
1 ACACGGCCATGAC
102387665 ACACG
1 ACACG
102387670 CCAGTGTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.39, G:0.23, T:0.06
Consensus pattern (13 bp):
ACACGGCCATGAC
Found at i:102392496 original size:14 final size:16
Alignment explanation
Indices: 102392462--102392500 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
102392452 AAAATCAAAT
*
102392462 AAAATTACATTATATA
1 AAAATCACATTATATA
102392478 AAAATCACATTA-A-A
1 AAAATCACATTATATA
102392492 AAAATCACA
1 AAAATCACA
102392501 AAACACTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.45
15 1 0.05
16 11 0.50
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATCACATTATATA
Found at i:102395645 original size:11 final size:11
Alignment explanation
Indices: 102395629--102395657 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
102395619 CATAGGGTTG
102395629 AGTAGTGGACC
1 AGTAGTGGACC
102395640 AGTAGTGGACC
1 AGTAGTGGACC
102395651 AGTAGTG
1 AGTAGTG
102395658 ACCTTGGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.14, G:0.38, T:0.21
Consensus pattern (11 bp):
AGTAGTGGACC
Found at i:102397605 original size:97 final size:98
Alignment explanation
Indices: 102397342--102397621 Score: 298
Period size: 97 Copynumber: 2.8 Consensus size: 98
102397332 TTTATGAAAT
* *
102397342 ACTCAT-AAC-ACTAACAAAATAACTACAAAATTATTATTTTTCTAAATTACATTACTAAAAAAT
1 ACTCATAAACTACTAACAAAATAACTATAAAATTATTATTATT-TAAATTACATTACTAAAAAAT
* * *
102397405 TACAAAACCCTAAACTAAACACTAACAATTTATAATCTA
65 AACAAAA--C---ACAAAACACTAACAATTTATAACCTA
* * * ***
102397444 ATCTCATAAATTACTAACAAAATAAATAACTATAACATT-TTTTTAAAAGAAATTACATTACTAA
1 A-CTCATAAACTACTAAC---A-AAATAACTATAAAATTATTATT-ATTTAAATTACATTACTAA
102397508 AAAATAACAAAACACAAAACACTAACAATTTATAACCTA
60 AAAATAACAAAACACAAAACACTAACAATTTATAACCTA
* * *
102397547 A-TCATAAACTACTAACAAAATAACTATAAAATTATTATTATTTAATTTACATTACTAAAAACTC
1 ACTCATAAACTACTAACAAAATAACTATAAAATTATTATTATTTAAATTACATTACTAAAAAATA
102397611 ACAAAACACAA
66 ACAAAACACAA
102397622 CAATTTATAA
Statistics
Matches: 149, Mismatches: 20, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
97 45 0.30
98 5 0.03
101 14 0.09
102 1 0.01
103 30 0.20
104 2 0.01
105 6 0.04
106 1 0.01
108 31 0.21
109 14 0.09
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (98 bp):
ACTCATAAACTACTAACAAAATAACTATAAAATTATTATTATTTAAATTACATTACTAAAAAATA
ACAAAACACAAAACACTAACAATTTATAACCTA
Found at i:102397936 original size:3 final size:3
Alignment explanation
Indices: 102397930--102397965 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
102397920 ATTACCTTTT
102397930 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT- TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
102397966 CCTTTCTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:102417112 original size:39 final size:38
Alignment explanation
Indices: 102417063--102417162 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 38
102417053 TGAATATAAT
* * *
102417063 AATTATAATTACCATAATTATAATAATGTTAGA-CCAAAA
1 AATTATAATTACAATAATTATAATAATATAAGATCC--AA
* *
102417102 AATTAAAATTACAATAATTATAATAATATAAGATCCTA
1 AATTATAATTACAATAATTATAATAATATAAGATCCAA
102417140 AATTATAATTACAATAATTATAA
1 AATTATAATTACAATAATTATAA
102417163 CAAAGATTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
38 23 0.43
39 29 0.54
40 2 0.04
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (38 bp):
AATTATAATTACAATAATTATAATAATATAAGATCCAA
Found at i:102423127 original size:15 final size:15
Alignment explanation
Indices: 102423107--102423137 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
102423097 ATGAGTAGAT
102423107 TTAATCTGTTTTAGC
1 TTAATCTGTTTTAGC
102423122 TTAATCTGTTTTAGC
1 TTAATCTGTTTTAGC
102423137 T
1 T
102423138 CCTTACCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55
Consensus pattern (15 bp):
TTAATCTGTTTTAGC
Found at i:102426112 original size:22 final size:23
Alignment explanation
Indices: 102426081--102426139 Score: 57
Period size: 26 Copynumber: 2.5 Consensus size: 23
102426071 AAAACAGAAT
*
102426081 ATAATGTTTAT-AATAAAGATAA
1 ATAATATTTATAAATAAAGATAA
*
102426103 ATAATATTTAATTAAAATAAAGTTAA
1 ATAATATTT-A-T-AAATAAAGATAA
*
102426129 ATAATAATTAT
1 ATAATATTTAT
102426140 CTTAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 8 0.27
23 1 0.03
24 2 0.07
25 1 0.03
26 18 0.60
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (23 bp):
ATAATATTTATAAATAAAGATAA
Found at i:102429145 original size:40 final size:40
Alignment explanation
Indices: 102428944--102429150 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 40
102428934 TGAATGATAC
* * *
102428944 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
102428984 CCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
102429023 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* ** *
102429063 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
102429103 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
102429143 CC-GGCTAA
1 CCGGGCTAA
102429151 ATTCCGAAGA
Statistics
Matches: 142, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 43 0.30
40 97 0.68
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:102437244 original size:40 final size:40
Alignment explanation
Indices: 102437042--102437249 Score: 233
Period size: 40 Copynumber: 5.2 Consensus size: 40
102437032 TGAATGATAC
* * *
102437042 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
102437082 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
102437122 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* ** *
102437162 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
102437202 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
102437242 CC-GGCTAA
1 CCGGGCTAA
102437250 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 137 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:102439585 original size:3 final size:3
Alignment explanation
Indices: 102439577--102439633 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
102439567 GGGCAGTAGG
* *
102439577 AGA AGA AG- AGA AAA AGA AGA ATA AG- AGA AGA A-A CA-A AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA AGA
102439619 AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA
102439634 GAAAATGGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 6 0.13
3 40 0.87
ACGTcount: A:0.68, C:0.02, G:0.28, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:102439595 original size:11 final size:10
Alignment explanation
Indices: 102439579--102439631 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 10
102439569 GCAGTAGGAG
102439579 AAGAAGAGAAA
1 AAGAAGA-AAA
102439590 AAGAAGAATAA
1 AAGAAGAA-AA
*
102439601 GAGAAGAAACA
1 AAGAAGAAA-A
102439612 AAGAAGAAGAA
1 AAGAAGAA-AA
102439623 GAAGAAGAA
1 -AAGAAGAA
102439632 GAGAAAATGG
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
10 2 0.06
11 25 0.69
12 9 0.25
ACGTcount: A:0.70, C:0.02, G:0.26, T:0.02
Consensus pattern (10 bp):
AAGAAGAAAA
Found at i:102439605 original size:22 final size:23
Alignment explanation
Indices: 102439577--102439631 Score: 78
Period size: 22 Copynumber: 2.4 Consensus size: 23
102439567 GGGCAGTAGG
*
102439577 AGAAGAAGAGAA-AAAGAAGAATA
1 AGAAGAAGA-AACAAAGAAGAAGA
102439600 AG-AGAAGAAACAAAGAAGAAGA
1 AGAAGAAGAAACAAAGAAGAAGA
102439622 AGAAGAAGAA
1 AGAAGAAGAA
102439632 GAGAAAATGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 2 0.07
22 18 0.62
23 9 0.31
ACGTcount: A:0.69, C:0.02, G:0.27, T:0.02
Consensus pattern (23 bp):
AGAAGAAGAAACAAAGAAGAAGA
Found at i:102439618 original size:25 final size:25
Alignment explanation
Indices: 102439576--102439633 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
102439566 TGGGCAGTAG
* *
102439576 GAGAAGAAGAGAAAAAGAAGAATAA
1 GAGAAGAAGACAAAAAGAAGAAGAA
102439601 GAGAAGAA-ACAAAGAAGAAGAAGAA
1 GAGAAGAAGACAAA-AAGAAGAAGAA
102439626 GAAGAAGA
1 G-AGAAGA
102439634 GAAAATGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 4 0.14
25 19 0.66
26 6 0.21
ACGTcount: A:0.67, C:0.02, G:0.29, T:0.02
Consensus pattern (25 bp):
GAGAAGAAGACAAAAAGAAGAAGAA
Found at i:102440841 original size:11 final size:11
Alignment explanation
Indices: 102440827--102440870 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
102440817 AGATAAATAT
102440827 TATTTTATTAA
1 TATTTTATTAA
* *
102440838 TATTTAATAAGA
1 TATTTTATTA-A
*
102440850 TATTTTATTAT
1 TATTTTATTAA
102440861 TATTTTATTA
1 TATTTTATTA
102440871 GTATATAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:102443156 original size:46 final size:46
Alignment explanation
Indices: 102442989--102443260 Score: 406
Period size: 46 Copynumber: 6.0 Consensus size: 46
102442979 AGTGTGCTCT
102442989 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
102443035 CTG-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
102443080 CTGATATG-AATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
102443125 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
102443171 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
102443217 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
102443261 TCACGTCAAA
Statistics
Matches: 210, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
45 91 0.43
46 119 0.57
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:102446184 original size:23 final size:25
Alignment explanation
Indices: 102446146--102446213 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 25
102446136 GAGATATTTT
*
102446146 GATATTTTATAATTATTTAATTAGATAA
1 GATATTTTATTATTA--TAATTA-ATAA
*
102446174 -ATATTTT-TTATTAATATTTAATAA
1 GATATTTTATTATT-ATAATTAATAA
102446198 GATATTTTATTATTAT
1 GATATTTTATTATTAT
102446214 TTTATTAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 4 0.11
25 14 0.40
26 9 0.26
27 8 0.23
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (25 bp):
GATATTTTATTATTATAATTAATAA
Found at i:102448345 original size:38 final size:39
Alignment explanation
Indices: 102448295--102448460 Score: 181
Period size: 46 Copynumber: 3.9 Consensus size: 39
102448285 CTGATATGAA
102448295 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
102448334 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G
*
102448379 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
102448418 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
102448461 ATGACAGAAA
Statistics
Matches: 110, Mismatches: 2, Indels: 23
0.81 0.01 0.17
Matches are distributed among these distances:
38 36 0.33
39 1 0.01
41 4 0.04
43 1 0.01
44 1 0.01
45 1 0.01
46 66 0.60
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:102448401 original size:46 final size:46
Alignment explanation
Indices: 102448334--102448494 Score: 216
Period size: 46 Copynumber: 3.5 Consensus size: 46
102448324 TGGCAACCTG
* *
102448334 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
102448380 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** *
102448426 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
** *
102448472 TAAGTAAGACCATAGTTGAAAGA
1 TGTGTAAGACCATGGTTGAAAGA
102448495 CACTATGACA
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 102 0.99
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:102449449 original size:21 final size:21
Alignment explanation
Indices: 102449423--102449468 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
102449413 GTCCAACGTG
102449423 GCTAGTTAACTGGCCACATCA
1 GCTAGTTAACTGGCCACATCA
* *
102449444 GCTAGTTAACTGGTCACGTCA
1 GCTAGTTAACTGGCCACATCA
102449465 GCTA
1 GCTA
102449469 TCCCGTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (21 bp):
GCTAGTTAACTGGCCACATCA
Found at i:102455692 original size:2 final size:2
Alignment explanation
Indices: 102455685--102455718 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
102455675 TTAACTACAA
102455685 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102455719 TCAAAACATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102460408 original size:23 final size:23
Alignment explanation
Indices: 102460382--102460426 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
102460372 AAATTAAGTA
102460382 AGTGTTTTAAAACAAATGTTTTT
1 AGTGTTTTAAAACAAATGTTTTT
102460405 AGTGTTTTAAAACAAATGTTTT
1 AGTGTTTTAAAACAAATGTTTT
102460427 CTAAATCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (23 bp):
AGTGTTTTAAAACAAATGTTTTT
Found at i:102467202 original size:17 final size:16
Alignment explanation
Indices: 102467158--102467210 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
102467148 AATTCAACAG
* *
102467158 AGAACAAAGAAGAAG-
1 AGAAGAAAGAAAAAGA
102467173 AGAAAGAAAGAAAAAGA
1 AG-AAGAAAGAAAAAGA
102467190 AGAAGAAATGAAAAAGA
1 AGAAGAAA-GAAAAAGA
102467207 AGAA
1 AGAA
102467211 ATTGAGGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 2 0.06
16 17 0.52
17 14 0.42
ACGTcount: A:0.72, C:0.02, G:0.25, T:0.02
Consensus pattern (16 bp):
AGAAGAAAGAAAAAGA
Found at i:102472345 original size:16 final size:18
Alignment explanation
Indices: 102472324--102472361 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
102472314 CAGTCTCTAG
*
102472324 CAGTTT-ACTATA-TTTT
1 CAGTTTAACTACAGTTTT
102472340 CAGTTTAACTACAGTTTT
1 CAGTTTAACTACAGTTTT
102472358 CAGT
1 CAGT
102472362 ATATACTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 5 0.26
18 8 0.42
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.47
Consensus pattern (18 bp):
CAGTTTAACTACAGTTTT
Found at i:102472413 original size:24 final size:25
Alignment explanation
Indices: 102472362--102472413 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
102472352 AGTTTTCAGT
* *
102472362 ATATACTAACTAGAGTATTTTCACA
1 ATATACTAACTAGAGTATGTTCAAA
* *
102472387 ATATACTACCTATAGTA-GTTCAAA
1 ATATACTAACTAGAGTATGTTCAAA
102472411 ATA
1 ATA
102472414 GCATAGCATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (25 bp):
ATATACTAACTAGAGTATGTTCAAA
Found at i:102474413 original size:22 final size:22
Alignment explanation
Indices: 102474385--102474430 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
102474375 CAGAGAACAG
* *
102474385 AGAAAAAGAGAAAGAAAGAAGA
1 AGAAAAAAAGAAAAAAAGAAGA
*
102474407 AGAAAAAAATAAAAAAAGAAGA
1 AGAAAAAAAGAAAAAAAGAAGA
102474429 AG
1 AG
102474431 TAGAGGAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (22 bp):
AGAAAAAAAGAAAAAAAGAAGA
Found at i:102486401 original size:22 final size:22
Alignment explanation
Indices: 102486376--102486450 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
102486366 CGAAGTGTTG
* * *
102486376 AACAATAGGTACTGTAGTGCAA
1 AACAATAGGCACCGTAGTACAA
*
102486398 AACAGTAGGCACCGTAGTACAA
1 AACAATAGGCACCGTAGTACAA
* * * *
102486420 ATCAATAGGCATCGAAGTACTA
1 AACAATAGGCACCGTAGTACAA
*
102486442 AACAGTAGG
1 AACAATAGG
102486451 TATCGAAGTG
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (22 bp):
AACAATAGGCACCGTAGTACAA
Found at i:102486455 original size:22 final size:21
Alignment explanation
Indices: 102486397--102486459 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
102486387 CTGTAGTGCA
* *
102486397 AAACAGTAGGCACCGTAGTAC
1 AAACAGTAGGCATCGAAGTAC
*
102486418 AAATCAATAGGCATCGAAGTAC
1 AAA-CAGTAGGCATCGAAGTAC
*
102486440 TAAACAGTAGGTATCGAAGT
1 -AAACAGTAGGCATCGAAGT
102486460 GTGAATCCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 3 0.09
22 29 0.83
23 3 0.09
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.19
Consensus pattern (21 bp):
AAACAGTAGGCATCGAAGTAC
Found at i:102494865 original size:25 final size:25
Alignment explanation
Indices: 102494834--102494886 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
102494824 AAATGGTAAA
*
102494834 CTCCTCCGAGCTGAATAACAATAAG
1 CTCCTCCGAACTGAATAACAATAAG
* * *
102494859 CTCCTCCGAACTGAGTATCAGTAAG
1 CTCCTCCGAACTGAATAACAATAAG
102494884 CTC
1 CTC
102494887 ATATGAGCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (25 bp):
CTCCTCCGAACTGAATAACAATAAG
Found at i:102495876 original size:36 final size:36
Alignment explanation
Indices: 102495835--102495906 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
102495825 CTCATTAATG
102495835 GGCTATTTACCATATAAGGACTTGCACATTAAATTT
1 GGCTATTTACCATATAAGGACTTGCACATTAAATTT
102495871 GGCTATTTACCATATAAGGACTTGCACATTAAATTT
1 GGCTATTTACCATATAAGGACTTGCACATTAAATTT
102495907 CTATAGCTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (36 bp):
GGCTATTTACCATATAAGGACTTGCACATTAAATTT
Found at i:102511365 original size:5 final size:5
Alignment explanation
Indices: 102511355--102511388 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
102511345 AACAAAATAT
102511355 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
102511389 TCCCCAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Done.