Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 330 of 425
Found at i:102513331 original size:28 final size:28
Alignment explanation
Indices: 102513273--102513331 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
102513263 AATATGGTAC
* * * *
102513273 TATTGAGAATGGCACTTAGTGTGCGAGA
1 TATTGAGAATGACACTTAATGTGCAAAA
102513301 TATTGAGAATGACACTTAATGTGCAAAA
1 TATTGAGAATGACACTTAATGTGCAAAA
102513329 TAT
1 TAT
102513332 CAAATGATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.31
Consensus pattern (28 bp):
TATTGAGAATGACACTTAATGTGCAAAA
Found at i:102513544 original size:43 final size:43
Alignment explanation
Indices: 102513443--102513571 Score: 129
Period size: 44 Copynumber: 3.0 Consensus size: 43
102513433 TTTATAATGG
* * * *
102513443 TGATATTCGGGCTTTGAGCCTAGCACGCTTTAA-GCTGGTGAATAA
1 TGATA-TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTG-A-AA
*
102513488 T-ATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
102513531 TGATATCGGGCTTCAAGCCTAACAGGCGA-AATGCCGGTGAA
1 TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
102513572 TGAGTTCAGA
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
42 12 0.17
43 25 0.35
44 26 0.36
45 9 0.12
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (43 bp):
TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:102513598 original size:41 final size:43
Alignment explanation
Indices: 102513504--102513598 Score: 106
Period size: 41 Copynumber: 2.3 Consensus size: 43
102513494 CGGGCTTCGG
* * * *
102513504 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
*
102513547 GCCTAACAGGCGA-AATGCCGGTG-AATGAGT-TCAGACTTAAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGA-TATCAGACTTAAA
*
102513588 GTCTAGCAGGC
1 GCCTAGCAGGC
102513599 TTCGTGCCGG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
41 22 0.50
42 11 0.25
43 11 0.25
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.21
Consensus pattern (43 bp):
GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
Found at i:102517968 original size:21 final size:22
Alignment explanation
Indices: 102517926--102517968 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
102517916 TTGTTGTGAA
**
102517926 ATTATTATGGTTAATTTGTTTGG
1 ATTATTAT-GTTAATTACTTTGG
102517949 ATTATTAT-TTAATTACTTTG
1 ATTATTATGTTAATTACTTTG
102517969 TTATTTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.56
23 8 0.44
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.58
Consensus pattern (22 bp):
ATTATTATGTTAATTACTTTGG
Found at i:102518222 original size:13 final size:15
Alignment explanation
Indices: 102518197--102518235 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
102518187 TTGTTTCATT
102518197 GAAAATGACTTTCGA
1 GAAAATGACTTTCGA
*
102518212 -AAAATGA-TTTCTA
1 GAAAATGACTTTCGA
102518225 GAAAATGACTT
1 GAAAATGACTT
102518236 GCTTTTCTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 5 0.24
14 14 0.67
15 2 0.10
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (15 bp):
GAAAATGACTTTCGA
Found at i:102520130 original size:22 final size:22
Alignment explanation
Indices: 102520111--102520160 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
102520101 ACAAAAATAT
102520111 AATAAAATATTTTTATAAATTA
1 AATAAAATATTTTTATAAATTA
*
102520133 AATATAATATTTTT-T--ATTA
1 AATAAAATATTTTTATAAATTA
102520152 AA-AAAATAT
1 AATAAAATAT
102520161 CTTCTTTGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 6 0.23
19 6 0.23
21 1 0.04
22 13 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
AATAAAATATTTTTATAAATTA
Found at i:102520158 original size:23 final size:22
Alignment explanation
Indices: 102520105--102520160 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
102520095 TAACATACAA
* *
102520105 AAATATAATAAAATATTTTTAT
1 AAATAAAATATAATATTTTTAT
*
102520127 AAATTAAATATAATATTTTTTATT
1 AAATAAAATATAATA-TTTTTA-T
102520151 AAA-AAAATAT
1 AAATAAAATAT
102520161 CTTCTTTGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 12 0.43
23 12 0.43
24 4 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATAAAATATAATATTTTTAT
Found at i:102522706 original size:10 final size:9
Alignment explanation
Indices: 102522677--102522766 Score: 69
Period size: 10 Copynumber: 9.4 Consensus size: 9
102522667 GATATATTAT
102522677 AATTATTAAA
1 AATTA-TAAA
102522687 AA-TATAAA
1 AATTATAAA
102522695 AATTATTAAA
1 AATTA-TAAA
*
102522705 AATCATAAA
1 AATTATAAA
102522714 AACTTATAAAAA
1 AA-TTAT--AAA
102522726 AATTCATAAA
1 AATT-ATAAA
*
102522736 AATTAATAACT
1 AATT-ATAA-A
102522747 AA-TATAAA
1 AATTATAAA
102522755 AATTA-AAA
1 AATTATAAA
102522763 AATT
1 AATT
102522767 TTATAGAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
8 15 0.22
9 16 0.24
10 25 0.37
11 4 0.06
12 7 0.10
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (9 bp):
AATTATAAA
Found at i:102522732 original size:22 final size:19
Alignment explanation
Indices: 102522677--102522764 Score: 83
Period size: 19 Copynumber: 4.6 Consensus size: 19
102522667 GATATATTAT
*
102522677 AATTATTAAAAAT-ATAAA
1 AATTATAAAAAATCATAAA
*
102522695 AATTATTAAAAATCATAAA
1 AATTATAAAAAATCATAAA
102522714 AACTTATAAAAAAATTCATAAA
1 AA-TTAT-AAAAAA-TCATAAA
**
102522736 AATTAATAACTAAT-ATAAA
1 AATT-ATAAAAAATCATAAA
102522755 AATTA-AAAAA
1 AATTATAAAAA
102522765 TTTTATAGAA
Statistics
Matches: 60, Mismatches: 5, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
17 3 0.05
18 14 0.23
19 16 0.27
20 5 0.08
21 11 0.18
22 11 0.18
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
AATTATAAAAAATCATAAA
Found at i:102522756 original size:29 final size:28
Alignment explanation
Indices: 102522687--102522766 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 28
102522677 AATTATTAAA
102522687 AATATAAAAATTATTAAAAATCATAAAAACT
1 AATATAAAAATTA-TAAAAAT--TAAAAACT
* * *
102522718 TATAAAAAAATTCATAAAAATTAATAACT
1 AATATAAAAATT-ATAAAAATTAAAAACT
102522747 AATATAAAAATTA-AAAAATT
1 AATATAAAAATTATAAAAATT
102522767 TTATAGAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
27 7 0.16
28 1 0.02
29 17 0.40
31 17 0.40
32 1 0.02
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (28 bp):
AATATAAAAATTATAAAAATTAAAAACT
Found at i:102522771 original size:19 final size:19
Alignment explanation
Indices: 102522720--102522776 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
102522710 TAAAAACTTA
* *
102522720 TAAAAAAATTCATAAAAAT
1 TAAAAAATTTTATAAAAAT
* * **
102522739 TAATAACTAATATAAAAAT
1 TAAAAAATTTTATAAAAAT
102522758 TAAAAAATTTTATAGAAAA
1 TAAAAAATTTTATA-AAAA
102522777 ATTCATTTAA
Statistics
Matches: 27, Mismatches: 10, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (19 bp):
TAAAAAATTTTATAAAAAT
Found at i:102523637 original size:10 final size:8
Alignment explanation
Indices: 102523601--102523659 Score: 57
Period size: 9 Copynumber: 7.0 Consensus size: 8
102523591 GTTATAAATG
102523601 TTTTTAATA
1 TTTTT-ATA
* *
102523610 TGTTTATC
1 TTTTTATA
102523618 TTTATTAT-
1 TTT-TTATA
102523626 TTTTTATAA
1 TTTTTAT-A
102523635 TTTTTATA
1 TTTTTATA
102523643 GTTTTTATA
1 -TTTTTATA
102523652 TTTTTATA
1 TTTTTATA
102523660 AGTTTATGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
7 4 0.09
8 16 0.37
9 23 0.53
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.69
Consensus pattern (8 bp):
TTTTTATA
Found at i:102523654 original size:17 final size:19
Alignment explanation
Indices: 102523626--102523664 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
102523616 TCTTTATTAT
102523626 TTTTTATAATTTTTAT-AG
1 TTTTTATAATTTTTATAAG
102523644 TTTTTAT-ATTTTTATAAG
1 TTTTTATAATTTTTATAAG
102523662 TTT
1 TTT
102523665 ATGTAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (19 bp):
TTTTTATAATTTTTATAAG
Found at i:102529154 original size:16 final size:16
Alignment explanation
Indices: 102529133--102529203 Score: 115
Period size: 16 Copynumber: 4.4 Consensus size: 16
102529123 GTTTGGTTCA
*
102529133 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
102529149 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
102529165 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
102529181 CTGTAATAGAATAGAG
1 CTGTAATGGAATAGAG
102529197 CTGTAAT
1 CTGTAAT
102529204 CAGTAATTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.37, C:0.07, G:0.28, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:102529268 original size:44 final size:46
Alignment explanation
Indices: 102529189--102529278 Score: 132
Period size: 44 Copynumber: 2.0 Consensus size: 46
102529179 AGCTGTAATA
*
102529189 GAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
1 GAATAAAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
*
102529235 GAATAAAGCTGTAAT-AG-AATTCTTA-TGTTTGGTTGAATGGAATG
1 GAATAAAGCTGTAATCAGTAATTC-AACTGTTTGGTTGAATGGAATG
102529279 ATGTTGTAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
44 24 0.59
45 3 0.07
46 14 0.34
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.34
Consensus pattern (46 bp):
GAATAAAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGGAATG
Found at i:102529441 original size:61 final size:56
Alignment explanation
Indices: 102529359--102529514 Score: 151
Period size: 61 Copynumber: 2.7 Consensus size: 56
102529349 GATTATTGTT
102529359 ATTAAATTTTAATA-AGATTATTGATACATATATTTTAATAAAAATAAAAATAAATAATTTA
1 ATTAAATTTTAATATA-ATTATT-ATACATATA-TTTAATAAAAAT---AATAAATAATTTA
* * * *
102529420 ATTATATTTTAATATAATTATTATTAAATATAATTTAAT-AAAATAATATATATTTTA
1 ATTAAATTTTAATATAATTATTA-TACATAT-ATTTAATAAAAATAATAAATAATTTA
102529477 A-TAACATTATTAATATAATTATTA-ACA-ATATTTAATAA
1 ATTAA-ATT-TTAATATAATTATTATACATATATTTAATAA
102529515 TAATTTTAAT
Statistics
Matches: 83, Mismatches: 6, Indels: 18
0.78 0.06 0.17
Matches are distributed among these distances:
54 7 0.08
55 3 0.04
56 4 0.05
57 15 0.18
58 15 0.18
60 6 0.07
61 31 0.37
62 2 0.02
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (56 bp):
ATTAAATTTTAATATAATTATTATACATATATTTAATAAAAATAATAAATAATTTA
Found at i:102539048 original size:2 final size:2
Alignment explanation
Indices: 102539041--102539071 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
102539031 ATCATTCAAT
102539041 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
102539072 CATTCTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:102539280 original size:18 final size:18
Alignment explanation
Indices: 102539259--102539293 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102539249 AATCAGTAAT
* *
102539259 CAGTAACGATAGCAGTAG
1 CAGTAACAATAACAGTAG
102539277 CAGTAACAATAACAGTA
1 CAGTAACAATAACAGTA
102539294 TTCAATACAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (18 bp):
CAGTAACAATAACAGTAG
Found at i:102539327 original size:45 final size:45
Alignment explanation
Indices: 102539277--102539383 Score: 133
Period size: 45 Copynumber: 2.4 Consensus size: 45
102539267 ATAGCAGTAG
** * ** *
102539277 CAGTAACAATAACAGTATTCAATACACAAAGTGTTGAATCTGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCAAATCGGTAA
* * *
102539322 CAGTAATGGTAACAATATTCGACACACAAAGTGTCAAATCGGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCAAATCGGTAA
102539367 CAGTAACGGTAACAGTA
1 CAGTAACGGTAACAGTA
102539384 ACAGTAATCG
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (45 bp):
CAGTAACGGTAACAGTATTCAACACACAAAGTGTCAAATCGGTAA
Found at i:102539378 original size:12 final size:12
Alignment explanation
Indices: 102539361--102539390 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
102539351 AGTGTCAAAT
102539361 CGGTAACAGTAA
1 CGGTAACAGTAA
102539373 CGGTAACAGTAA
1 CGGTAACAGTAA
*
102539385 CAGTAA
1 CGGTAA
102539391 TCGGCACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:102539671 original size:40 final size:40
Alignment explanation
Indices: 102539595--102539675 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
102539585 CTTCATTAGA
* ** *
102539595 AATTTTACAGTTCAATGCAATATACGTAACATTATTCAGT
1 AATTTCACAGTTCAATGCAATATACAAAACAATATTCAGT
* * *
102539635 AATTTCACAGTTCAATTCGATATTCAAAACAATATTCAGT
1 AATTTCACAGTTCAATGCAATATACAAAACAATATTCAGT
102539675 A
1 A
102539676 TCCCATAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (40 bp):
AATTTCACAGTTCAATGCAATATACAAAACAATATTCAGT
Found at i:102540471 original size:8 final size:8
Alignment explanation
Indices: 102540458--102540514 Score: 64
Period size: 8 Copynumber: 7.0 Consensus size: 8
102540448 TTTCTTTTAT
102540458 ATATAATA
1 ATATAATA
102540466 ATATAAT-
1 ATATAATA
102540473 ATA-ATATA
1 ATATA-ATA
*
102540481 ATGTAATATA
1 ATAT-A-ATA
102540491 ATATAATA
1 ATATAATA
102540499 ATATAATA
1 ATATAATA
102540507 ATATAATA
1 ATATAATA
102540515 TACTTAATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
6 1 0.02
7 5 0.12
8 28 0.65
9 1 0.02
10 8 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (8 bp):
ATATAATA
Found at i:102540473 original size:5 final size:5
Alignment explanation
Indices: 102540463--102540516 Score: 74
Period size: 5 Copynumber: 10.6 Consensus size: 5
102540453 TTTATATATA
*
102540463 ATAAT ATAAT ATAAT ATAAT GTAAT ATAAT ATAAT A-ATAT AATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT -ATAAT ATAAT
102540514 ATA
1 ATA
102540517 CTTAATTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
4 1 0.02
5 39 0.89
6 3 0.07
7 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:102541613 original size:34 final size:36
Alignment explanation
Indices: 102541552--102541618 Score: 86
Period size: 34 Copynumber: 1.9 Consensus size: 36
102541542 TACATAGTAA
*
102541552 TATAAAATAATAAGTGATGATAGTGAAACTAATGGG
1 TATAAAATAATAAGTGATGATAGTGAAAATAATGGG
*
102541588 TATAATAATTATAA-TGAT-ATA-TGAAAATAAT
1 TATAA-AATAATAAGTGATGATAGTGAAAATAAT
102541619 ACTATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 9 0.32
35 3 0.11
36 9 0.32
37 7 0.25
ACGTcount: A:0.51, C:0.01, G:0.15, T:0.33
Consensus pattern (36 bp):
TATAAAATAATAAGTGATGATAGTGAAAATAATGGG
Found at i:102541749 original size:29 final size:30
Alignment explanation
Indices: 102541709--102541770 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
102541699 TGTAATAATG
* * *
102541709 ATATATACACAATGTGGTA-TTAAGAATAT
1 ATATATACACAATATAGTATTTAAAAATAT
*
102541738 ATATATATACAATATAGTATTTAAAAATAT
1 ATATATACACAATATAGTATTTAAAAATAT
102541768 ATA
1 ATA
102541771 CATAAGATGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (30 bp):
ATATATACACAATATAGTATTTAAAAATAT
Found at i:102541786 original size:24 final size:23
Alignment explanation
Indices: 102541759--102541819 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
102541749 ATATAGTATT
102541759 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
102541783 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
102541807 TAAGAAATATATA
1 TAA-AAATATATA
102541820 TAATTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 20 0.62
25 10 0.31
26 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.30
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:102541947 original size:16 final size:17
Alignment explanation
Indices: 102541916--102541950 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
102541906 AACTACTTTG
102541916 TACACTACACAAATATA
1 TACACTACACAAATATA
*
102541933 TACAC-ACACATATATA
1 TACACTACACAAATATA
102541949 TA
1 TA
102541951 TATATATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (17 bp):
TACACTACACAAATATA
Found at i:102542074 original size:16 final size:15
Alignment explanation
Indices: 102542029--102542080 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 15
102542019 TATATAACTA
102542029 ATAATATTAAAATATAT
1 ATAATATTAAAA-A-AT
102542046 ATAATATATAAAAAAT
1 ATAATAT-TAAAAAAT
*
102542062 ATAATATTGAAAACAT
1 ATAATATT-AAAAAAT
102542078 ATA
1 ATA
102542081 TACGTAACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
15 1 0.03
16 18 0.56
17 8 0.25
18 5 0.16
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (15 bp):
ATAATATTAAAAAAT
Found at i:102542292 original size:17 final size:16
Alignment explanation
Indices: 102542266--102542297 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
102542256 CTATATATAA
102542266 ATATATATACATACAT
1 ATATATATACATACAT
102542282 ATATAATATACATACA
1 ATAT-ATATACATACA
102542298 CTAGTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:102542335 original size:3 final size:3
Alignment explanation
Indices: 102542327--102542462 Score: 50
Period size: 3 Copynumber: 45.3 Consensus size: 3
102542317 TAGAACTAGA
* * * *
102542327 AAT AAT AAT AATT AGT AAT AAT AAT ACGT TAG AA- AAT AATT AAT -AT
1 AAT AAT AAT AA-T AAT AAT AAT AAT A-AT AAT AAT AAT AA-T AAT AAT
** * * * * *
102542373 GTT AAT AAA AAT AAT AGT AAT GAA- AAT AAT ATT AAC AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* * *
102542418 AA- AGAT AAA AAT AGA- AAT AA- AAT AAT AGT AAT AAT ATT AAT AAT
1 AAT A-AT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
102542462 A
1 A
102542463 TGTAAAAAAA
Statistics
Matches: 95, Mismatches: 26, Indels: 24
0.66 0.18 0.17
Matches are distributed among these distances:
2 10 0.11
3 75 0.79
4 10 0.11
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:102545434 original size:15 final size:16
Alignment explanation
Indices: 102545403--102545433 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102545393 AAGCCTAGGG
102545403 GCAAAAATATAATTTT
1 GCAAAAATATAATTTT
*
102545419 GCAAAAATATGATTT
1 GCAAAAATATAATTT
102545434 GTGGATCACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.35
Consensus pattern (16 bp):
GCAAAAATATAATTTT
Found at i:102554841 original size:15 final size:15
Alignment explanation
Indices: 102554821--102554854 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
102554811 TATATTCATC
102554821 ATTTCAACTACCATA
1 ATTTCAACTACCATA
*
102554836 ATTTCAACTACCATC
1 ATTTCAACTACCATA
102554851 ATTT
1 ATTT
102554855 AAGTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.38
Consensus pattern (15 bp):
ATTTCAACTACCATA
Found at i:102556475 original size:101 final size:101
Alignment explanation
Indices: 102556352--102556548 Score: 304
Period size: 101 Copynumber: 2.0 Consensus size: 101
102556342 CTTACATTCG
* * **
102556352 TAGTGCCATAACCCAGTTATGGTCTTATCGTCAAAATGTCATAGCCCAGCTATGGTCTTACATAT
1 TAGTGCCATAACCCAATTATGGTCTTATCATCAAAATACCATAGCCCAGCTATGGTCTTACATAT
*
102556417 AAACATTGCCATAGTCCAACCATAGTCTTACGTCCA
66 AAACACTGCCATAGTCCAACCATAGTCTTACGTCCA
* * *
102556453 TAGTGTCATAACTCAATTATGGTCTTATCATCAGAATACCATAGCCCAGCTATGGTCTTACATAT
1 TAGTGCCATAACCCAATTATGGTCTTATCATCAAAATACCATAGCCCAGCTATGGTCTTACATAT
* *
102556518 AAACACTGCCATGGTCCAACCATGGTCTTAC
66 AAACACTGCCATAGTCCAACCATAGTCTTAC
102556549 ATTTGAATAA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 86 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (101 bp):
TAGTGCCATAACCCAATTATGGTCTTATCATCAAAATACCATAGCCCAGCTATGGTCTTACATAT
AAACACTGCCATAGTCCAACCATAGTCTTACGTCCA
Found at i:102558438 original size:110 final size:111
Alignment explanation
Indices: 102558211--102558428 Score: 348
Period size: 110 Copynumber: 2.0 Consensus size: 111
102558201 CCATCCCGAA
*
102558211 AGCTTTATAACCAATACTTCTCCCTAATAGTCTAAATACCACTACATTCTCCATACTCTTGTCAA
1 AGCTTTATAACCAATACTTCTCCCTAATAGTCTAAATACCACTACATTCTCCAAACTCTTGTCAA
* * *
102558276 TCAAACTGTGAACTTTATCAAGAAACCTAATCTCGAGATATGGGAC
66 TCAAACTATGAACTCTATCAAGAAACATAATCTCGAGATATGGGAC
* *
102558322 AGCTTTATAACCAATACTTCTCCCTAA-AGTCTAAATACTACTACATTTTCCAAACTCTTGTCAA
1 AGCTTTATAACCAATACTTCTCCCTAATAGTCTAAATACCACTACATTCTCCAAACTCTTGTCAA
* * *
102558386 TCAAACTATGAACTCTCTTAGGAAACATAATCTCGAGATATGG
66 TCAAACTATGAACTCTATCAAGAAACATAATCTCGAGATATGG
102558429 TCCCTCTTTA
Statistics
Matches: 98, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
110 71 0.72
111 27 0.28
ACGTcount: A:0.35, C:0.24, G:0.10, T:0.31
Consensus pattern (111 bp):
AGCTTTATAACCAATACTTCTCCCTAATAGTCTAAATACCACTACATTCTCCAAACTCTTGTCAA
TCAAACTATGAACTCTATCAAGAAACATAATCTCGAGATATGGGAC
Found at i:102562518 original size:26 final size:25
Alignment explanation
Indices: 102562488--102562541 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
102562478 TATAATATAA
102562488 TTAATA-ATATTTATGTTTTATTATTT
1 TTAATATATATTTAT-TTTT-TTATTT
*
102562514 TTAATATATGTTTATTTTTTTATTT
1 TTAATATATATTTATTTTTTTATTT
102562539 TTA
1 TTA
102562542 TTTATTATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 9 0.35
26 10 0.38
27 7 0.27
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.69
Consensus pattern (25 bp):
TTAATATATATTTATTTTTTTATTT
Found at i:102562522 original size:25 final size:25
Alignment explanation
Indices: 102562488--102562541 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 25
102562478 TATAATATAA
102562488 TTAATAATA-TTTATGTTTTATTATTT
1 TTAATAATAGTTTAT-TTTT-TTATTT
102562514 TTAAT-ATATGTTTATTTTTTTATTT
1 TTAATAATA-GTTTATTTTTTTATTT
102562539 TTA
1 TTA
102562542 TTTATTATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 12 0.46
26 9 0.35
27 5 0.19
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.69
Consensus pattern (25 bp):
TTAATAATAGTTTATTTTTTTATTT
Found at i:102570778 original size:23 final size:23
Alignment explanation
Indices: 102570752--102570796 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
102570742 AGTTACTACA
*
102570752 AGAAAATTTTGAGATGGGGATAG
1 AGAAAAATTTGAGATGGGGATAG
102570775 AGAAAAATTTGAGATGGGGATA
1 AGAAAAATTTGAGATGGGGATA
102570797 AAGCGGGCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.24
Consensus pattern (23 bp):
AGAAAAATTTGAGATGGGGATAG
Found at i:102576694 original size:36 final size:34
Alignment explanation
Indices: 102576616--102576690 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
102576606 TAGGGTTTTA
*
102576616 TTAAAATAATTTAAGGTTAAGTTTGTAGTATTTG
1 TTAAAATAATTTAAGGTTAAGTTTGTAGAATTTG
*
102576650 TTAAAATAATTTAGGGTTCTAAGTTT-TAGGAATTT-
1 TTAAAATAATTTAAGG-T-TAAGTTTGTA-GAATTTG
102576685 TTAAAA
1 TTAAAA
102576691 ATAAATCAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
34 15 0.42
35 9 0.25
36 12 0.33
ACGTcount: A:0.37, C:0.01, G:0.16, T:0.45
Consensus pattern (34 bp):
TTAAAATAATTTAAGGTTAAGTTTGTAGAATTTG
Found at i:102576975 original size:126 final size:126
Alignment explanation
Indices: 102576844--102577237 Score: 549
Period size: 126 Copynumber: 3.1 Consensus size: 126
102576834 GATTTTGGTT
* * * *
102576844 TTTTTCTATAATAGTTCCTAAAAAAATAATTTTTAGAAGATGGTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAGATGGTTCTAAACAAATAGTGTCAAAA
* * *
102576909 ACGCTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAACTCCCACATGGACGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* *
102576970 TTTTTCTACAATAGTTTCTGAAAAAATAATTTTGAGAAGATAGTTCTAAACAAATAGTGTCAAAA
1 TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAGATGGTTCTAAACAAATAGTGTCAAAA
* * * *
102577035 ACGCTTCAAGCAGGATGCACTGTTAGCAAAATTGA-TGAAAAAAGCTCCTACGTAGAC-ATAC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATT-ACTGAAAAAAGCTCCCACGTGGACGCT-C
* * * * *
102577096 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTAAATAAATAGTGTAAAAA
1 TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAGATGGTTCTAAACAAATAGTGTCAAAA
* * * *
102577161 ATGCTTCAAACAGGATGCACTGTCAGCAAAATTACAGAAAAAAGCTCCCATGTGGACGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
*
102577222 TTTTTCTACAGTAGTT
1 TTTTTCTACAATAGTT
102577238 TATGTTTGGC
Statistics
Matches: 236, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
125 2 0.01
126 232 0.98
127 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAGATGGTTCTAAACAAATAGTGTCAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
Found at i:102580328 original size:18 final size:18
Alignment explanation
Indices: 102580302--102580344 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
102580292 GACTGGGAAA
* *
102580302 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
102580320 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
102580338 AGGATAC
1 AGGATAC
102580345 GCACCTGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:102581219 original size:24 final size:24
Alignment explanation
Indices: 102581192--102581240 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
102581182 ATCATAGAAA
102581192 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
*
102581216 GTGTAGTATGGCACTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
102581240 G
1 G
102581241 AGTTGAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.16, C:0.14, G:0.37, T:0.33
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:102581253 original size:24 final size:24
Alignment explanation
Indices: 102581202--102581261 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
102581192 GTGTACATTG
* * *
102581202 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTAGAATA
*
102581226 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTAGAATA
*
102581250 GCACTATATGTG
1 GCACTATGTGTG
102581262 TTGATTTGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.22, C:0.13, G:0.33, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTAGAATA
Found at i:102585823 original size:21 final size:21
Alignment explanation
Indices: 102585794--102585835 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
102585784 ACGAGACAGG
*
102585794 TGACGTGGCCTGTTAACTAGC
1 TGACGTGGCCAGTTAACTAGC
*
102585815 TGACTTGGCCAGTTAACTAGC
1 TGACGTGGCCAGTTAACTAGC
102585836 CACGATGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (21 bp):
TGACGTGGCCAGTTAACTAGC
Found at i:102586419 original size:24 final size:23
Alignment explanation
Indices: 102586372--102586430 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 23
102586362 TACTCTAGAA
102586372 TTTTTCTCTTCTTCTTCTCATCTTC
1 TTTTTCT-TT-TTCTTCTCATCTTC
* *
102586397 TTTTTCTTTTTCTTCCTCTTCTTT
1 TTTTTCTTTTTCTT-CTCATCTTC
102586421 TTTTTCTTTT
1 TTTTTCTTTT
102586431 ACTGCCCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 5 0.16
24 19 0.61
25 7 0.23
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTTTCTTTTTCTTCTCATCTTC
Found at i:102589134 original size:2 final size:2
Alignment explanation
Indices: 102589127--102589153 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
102589117 GGAGAAACAT
102589127 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
102589154 GAATTTAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:102595199 original size:43 final size:43
Alignment explanation
Indices: 102595112--102595235 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 43
102595102 CAACAACTTA
* *
102595112 TGATTTACGTGTAAGACCACGTCTGGGACGCTGGCATTGCATT
1 TGATTTACGTGTAAGACCACGTCTGGGAAGCTGGCATTACATT
*
102595155 TGATTT-CGTGTAAGACC-CTGTCTGGGATAG-TGGCATCTATATT
1 TGATTTACGTGTAAGACCAC-GTCTGGGA-AGCTGGCAT-TACATT
* * * *
102595198 TG-TTTACATGTAAGACCACGTCTGCGACGTTGGCATTA
1 TGATTTACGTGTAAGACCACGTCTGGGAAGCTGGCATTA
102595236 TACGAGCTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
41 1 0.01
42 31 0.45
43 36 0.52
44 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (43 bp):
TGATTTACGTGTAAGACCACGTCTGGGAAGCTGGCATTACATT
Found at i:102599310 original size:462 final size:462
Alignment explanation
Indices: 102598442--102599374 Score: 1526
Period size: 462 Copynumber: 2.0 Consensus size: 462
102598432 AATTTCGACT
* * * *
102598442 TATT-CTATGATGTGTTTTCTATTACTAAGAACTTTGTGTGATGAACTGGAATCTATTATTGCAA
1 TATTACTATGATATGTTTTCTATTACCAAGAACTTTGTGTGATGAACTAGAATCTATTATTACAA
**
102598506 AGTACTGGTGGCAAAAAGGACATGGTCAGAAAGGAATACATTGGTGTAGCTGGAAGAAAACATGT
66 AGTACTGGTGGCAAAAAGGACATGGTCAGAAAGGAATACATTGGTGTAGCTAAAAGAAAACATGT
* *
102598571 GAACTAAAACATGTAGAAGGGTTGGGTTTTCAAAATTTCGCAAAGTTTAATGTGGCTCTCCTTGC
131 GAACTAAAACATGTAGAAGGGTTGGGTTTTCAAAATTTCACAAAGTTTAATGGGGCTCTCCTTGC
* *
102598636 TAAACAGGGCTGGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGTGAAAT
196 TAAACAGGGCTAGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGCGAAAT
* * *
102598701 ACTACCCGACTACTAATTTCCTACAAGTAGAGCTCAGACATCATCCATCTTATACGTGGAAAAGT
261 ACTACCCAACTACTAATTTCCTACAAGTAGAACTCAGACATAATCCATCTTATACGTGGAAAAGT
** * * ** * *
102598766 ATTTGGGCAGTGAAAGGTATTTTGAAAGAGGGATTGGGGTGGCTAGTTGGCATAGGCGAAAATAT
326 ATTTGGGCAACGAAAGATATTTTGAAAGAGGGACTGGGGTGGAGAGTTGGCACAAGCGAAAATAT
* * * * *
102598831 TATAATTAACGATGATGCATGGCTACCCGGGGTAGATAATTTTAGAGTTTGTCACTATATCTCTA
391 TATAATTAACGATGATGCATGGCTACCCGAGGCAGATAATTGTAAAGTTCGTCACTATATCTCTA
102598896 ATGATAA
456 ATGATAA
102598903 TATTACTATGATATGTTTTCTATTACCAAGAACTTTGTGTGATGAACTAGAATCTATTATTACAA
1 TATTACTATGATATGTTTTCTATTACCAAGAACTTTGTGTGATGAACTAGAATCTATTATTACAA
*
102598968 AGTATTGGTGGCAAAAAGGACATGGTCAGAAAGGAATACATTGGTGTAGCTAAAAGAAAACATGT
66 AGTACTGGTGGCAAAAAGGACATGGTCAGAAAGGAATACATTGGTGTAGCTAAAAGAAAACATGT
* **
102599033 GAACTTAAACATGTAGAAGGGTTGGGTTTTCGTAATTTCACAAAGTTTAATGGGGCTCTCCTTGC
131 GAACTAAAACATGTAGAAGGGTTGGGTTTTCAAAATTTCACAAAGTTTAATGGGGCTCTCCTTGC
*
102599098 TGAACAGGGCTAGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGCGAAAT
196 TAAACAGGGCTAGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGCGAAAT
* * * *
102599163 ACTACTCAACTACTAATTTTCTACAAGTAGAACTCGGACGTAATCCATCTTATACGTGGAAAAGT
261 ACTACCCAACTACTAATTTCCTACAAGTAGAACTCAGACATAATCCATCTTATACGTGGAAAAGT
*
102599228 ATTTGGGCAACGAAAGATATTTTGAAAGAGGGACTGGGGTGGAGAGTTGGCACAAGTGAAAATAT
326 ATTTGGGCAACGAAAGATATTTTGAAAGAGGGACTGGGGTGGAGAGTTGGCACAAGCGAAAATAT
*
102599293 TATAATTAACGATGATGCGTGGCTACCCGAGGCAGATAATTGTAAAGTTCGTCACTATATCTCTA
391 TATAATTAACGATGATGCATGGCTACCCGAGGCAGATAATTGTAAAGTTCGTCACTATATCTCTA
102599358 ATGATAA
456 ATGATAA
102599365 TATTACTATG
1 TATTACTATG
102599375 GTTGCATCAC
Statistics
Matches: 434, Mismatches: 37, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
461 4 0.01
462 430 0.99
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (462 bp):
TATTACTATGATATGTTTTCTATTACCAAGAACTTTGTGTGATGAACTAGAATCTATTATTACAA
AGTACTGGTGGCAAAAAGGACATGGTCAGAAAGGAATACATTGGTGTAGCTAAAAGAAAACATGT
GAACTAAAACATGTAGAAGGGTTGGGTTTTCAAAATTTCACAAAGTTTAATGGGGCTCTCCTTGC
TAAACAGGGCTAGAGGCTAATTGACCAACCAGATTCTTTATTAGCACAAGTATTAAAAGCGAAAT
ACTACCCAACTACTAATTTCCTACAAGTAGAACTCAGACATAATCCATCTTATACGTGGAAAAGT
ATTTGGGCAACGAAAGATATTTTGAAAGAGGGACTGGGGTGGAGAGTTGGCACAAGCGAAAATAT
TATAATTAACGATGATGCATGGCTACCCGAGGCAGATAATTGTAAAGTTCGTCACTATATCTCTA
ATGATAA
Found at i:102606727 original size:164 final size:164
Alignment explanation
Indices: 102606456--102606787 Score: 569
Period size: 164 Copynumber: 2.0 Consensus size: 164
102606446 TGACTTTTCC
*
102606456 AGAAAAGTTTAGCCATTCTTCCTAAAGCGAAAAAGTGATGTGTTTTTCGCGTTTAAGGCTTGGAA
1 AGAAAAGTTTAGCCATTCTTCCTAAAGCGAAAAAGTGATGTGTTTTTCGCATTTAAGGCTTGGAA
*
102606521 AACTATGATCGAGAAGTAGACAAGAAAATAGATAAAACACCTCCACACAG-ACAATGGCTTGGAG
66 AACTATGATCGAGAAGTAGACAAGAAAACAGATAAAACACCTCCACACAGCA-AATGGCTTGGAG
102606585 TTCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
130 TTCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
** *
102606620 AGAAAAGTTTAGTTATTCTTTCTAAAGC-AGAAAAGTGATGTGTTTTTCGCATTTAAGGCTTGGA
1 AGAAAAGTTTAGCCATTCTTCCTAAAGCGA-AAAAGTGATGTGTTTTTCGCATTTAAGGCTTGGA
* *
102606684 AAACTATGATCGAGAAGTAGACAAGAAAACATATAAAACACCTCCACATAGCAAATGGCTTGGAG
65 AAACTATGATCGAGAAGTAGACAAGAAAACAGATAAAACACCTCCACACAGCAAATGGCTTGGAG
102606749 TTCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
130 TTCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
102606784 AGAA
1 AGAA
102606788 GGGATCATAA
Statistics
Matches: 159, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
163 1 0.01
164 157 0.99
165 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (164 bp):
AGAAAAGTTTAGCCATTCTTCCTAAAGCGAAAAAGTGATGTGTTTTTCGCATTTAAGGCTTGGAA
AACTATGATCGAGAAGTAGACAAGAAAACAGATAAAACACCTCCACACAGCAAATGGCTTGGAGT
TCTGTTCTAGTGAGTTTAATGAAATATGCAAATT
Found at i:102609968 original size:41 final size:42
Alignment explanation
Indices: 102609923--102610061 Score: 124
Period size: 41 Copynumber: 3.4 Consensus size: 42
102609913 ATTGTTTTAT
* * * *
102609923 AGATAAA-ATGCCATTGGACTGTGGATGTATAACTTATTTGC
1 AGATAAAGATGCCACTGGACTGTGGATGCACAACATATTTGC
* * *
102609964 AGATAAAGCTGCCACTGGGCTGTGGGTGCACAACATATTTGC
1 AGATAAAGATGCCACTGGACTGTGGATGCACAACATATTTGC
* * * * *
102610006 AGAT-AAGCTGTCACTAGG-TTGTGGGTGAACAACATATTTGC
1 AGATAAAGATGCCACT-GGACTGTGGATGCACAACATATTTGC
*
102610047 AGATAAA-TTGCCACT
1 AGATAAAGATGCCACT
102610062 AGGCTCTGAA
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
41 48 0.58
42 35 0.42
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
AGATAAAGATGCCACTGGACTGTGGATGCACAACATATTTGC
Found at i:102610062 original size:41 final size:41
Alignment explanation
Indices: 102609957--102610066 Score: 157
Period size: 41 Copynumber: 2.7 Consensus size: 41
102609947 ATGTATAACT
* *
102609957 TATTTGCAGATAAAGCTGCCACTGGGCTGTGGGTGCACAACA
1 TATTTGCAGATAAA-CTGCCACTAGGCTGTGGGTGAACAACA
* * *
102609999 TATTTGCAGATAAGCTGTCACTAGGTTGTGGGTGAACAACA
1 TATTTGCAGATAAACTGCCACTAGGCTGTGGGTGAACAACA
*
102610040 TATTTGCAGATAAATTGCCACTAGGCT
1 TATTTGCAGATAAACTGCCACTAGGCT
102610067 CTGAATGCAT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
41 46 0.78
42 13 0.22
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (41 bp):
TATTTGCAGATAAACTGCCACTAGGCTGTGGGTGAACAACA
Found at i:102612101 original size:12 final size:13
Alignment explanation
Indices: 102612065--102612102 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
102612055 AAATATTTAA
102612065 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
102612078 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
102612092 CTTG-TCTTAAT
1 CTTGTTCTTAAT
102612103 ATTCCAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:102627041 original size:25 final size:25
Alignment explanation
Indices: 102627021--102627116 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
102627011 GACTTTCTAG
*
102627021 ATAATTCGCCATAAAGGCTTTCCAA
1 ATAATTCGCCACAAAGGCTTTCCAA
*
102627046 ATGATAT-GCCACAAAGGCTTTCCAA
1 ATAAT-TCGCCACAAAGGCTTTCCAA
* * * * * *
102627071 AAAATTCACTAAAAAGACTTTCCAG
1 ATAATTCGCCACAAAGGCTTTCCAA
*
102627096 ATAATACGCCACAAAGGCTTT
1 ATAATTCGCCACAAAGGCTTT
102627117 TTGAGAGAAT
Statistics
Matches: 54, Mismatches: 15, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
24 1 0.02
25 52 0.96
26 1 0.02
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.25
Consensus pattern (25 bp):
ATAATTCGCCACAAAGGCTTTCCAA
Found at i:102633844 original size:21 final size:24
Alignment explanation
Indices: 102633800--102633845 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 24
102633790 GCCCACCCCA
102633800 TTCTACTTAAAGTAGAATACTATT
1 TTCTACTTAAAGTAGAATACTATT
*
102633824 TTCTA-TTAAA-TA-AATATTATT
1 TTCTACTTAAAGTAGAATACTATT
102633845 T
1 T
102633846 GTGTTTTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 2 0.10
23 5 0.24
24 5 0.24
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (24 bp):
TTCTACTTAAAGTAGAATACTATT
Found at i:102639010 original size:57 final size:57
Alignment explanation
Indices: 102638910--102639049 Score: 142
Period size: 57 Copynumber: 2.4 Consensus size: 57
102638900 ATGTGTACAA
* ** * * *
102638910 CAGGATTACCAGTCCAAGCTAAATCCTTTTTATGACATATGCTCTA-AGGAGCT-TGAT
1 CAGGATTACCAGTCCGAGCTAAATCCAATCTATAACATATGCTCGAGAGGA-CTAT-AT
* * *
102638967 CTGGATTACCTGTCCGAGCTAAATCCAATCTATAACATGTGCTCGAGAGGACTCATAT
1 CAGGATTACCAGTCCGAGCTAAATCCAATCTATAACATATGCTCGAGAGGACT-ATAT
102639025 CAGGATTACCCA-TCCGAGCTAAATC
1 CAGGATTA-CCAGTCCGAGCTAAATC
102639050 TTTTTCTATG
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
57 39 0.57
58 26 0.38
59 3 0.04
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (57 bp):
CAGGATTACCAGTCCGAGCTAAATCCAATCTATAACATATGCTCGAGAGGACTATAT
Found at i:102639778 original size:20 final size:20
Alignment explanation
Indices: 102639753--102639791 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
102639743 TGTATTTATA
* *
102639753 AAATTTTATAATTTTTCATC
1 AAATTTTACAACTTTTCATC
102639773 AAATTTTACAACTTTTCAT
1 AAATTTTACAACTTTTCAT
102639792 TTTAGTCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.00, T:0.51
Consensus pattern (20 bp):
AAATTTTACAACTTTTCATC
Found at i:102640560 original size:2 final size:2
Alignment explanation
Indices: 102640555--102640620 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
102640545 TGTTAACAAA
102640555 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
102640597 AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG
102640621 GCCTATAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:102645267 original size:2 final size:2
Alignment explanation
Indices: 102645260--102645294 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
102645250 TTAAATTTAT
*
102645260 TA TA TA TA TA TA TA TA TA TA TA TA -A AA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102645295 AAAGACTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:102646048 original size:30 final size:31
Alignment explanation
Indices: 102646012--102646071 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
102646002 TACTTTTGTA
*
102646012 ATTTTTAAA-AAATTAAATTAAAATTTTATC
1 ATTTTTAAATAAATTAAAGTAAAATTTTATC
* *
102646042 ATTTTTAAATAAGTTAAAGTATAATTTTAT
1 ATTTTTAAATAAATTAAAGTAAAATTTTAT
102646072 TTTTATTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 9 0.35
31 17 0.65
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (31 bp):
ATTTTTAAATAAATTAAAGTAAAATTTTATC
Found at i:102649360 original size:13 final size:13
Alignment explanation
Indices: 102649342--102649367 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102649332 TCATCTTTTA
102649342 GAAATAGTGCATT
1 GAAATAGTGCATT
102649355 GAAATAGTGCATT
1 GAAATAGTGCATT
102649368 TAATTTTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
GAAATAGTGCATT
Found at i:102651037 original size:26 final size:26
Alignment explanation
Indices: 102651000--102651135 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
102650990 TGATACAAAT
*
102651000 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102651026 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
102651052 TGATAATAGGTAAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
102651078 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
102651104 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
102651130 TGATAA
1 TGATAA
102651136 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:102653165 original size:137 final size:137
Alignment explanation
Indices: 102652918--102653204 Score: 513
Period size: 137 Copynumber: 2.1 Consensus size: 137
102652908 GAGTAGTCTC
102652918 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
102652983 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAAGGGCTTTGGCCCAGTAT
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTG-AAAAGGGCTCTGGCCCAGTAC
102653048 CACTGTTA
130 CACTGTTA
*
102653056 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
102653120 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
102653185 ACTGTTA
131 ACTGTTA
**
102653192 CCTGAATGGGCTT
1 CCCAAATGGGCTT
102653205 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
136 38 0.26
137 86 0.60
138 20 0.14
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:102665258 original size:17 final size:17
Alignment explanation
Indices: 102665232--102665266 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
102665222 GGAAGCTTGG
102665232 ATCAGCACTCAAGTCAC
1 ATCAGCACTCAAGTCAC
*
102665249 ATCAGTACTCAAGTCAC
1 ATCAGCACTCAAGTCAC
102665266 A
1 A
102665267 CTATCCATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.31, G:0.11, T:0.20
Consensus pattern (17 bp):
ATCAGCACTCAAGTCAC
Found at i:102665401 original size:17 final size:17
Alignment explanation
Indices: 102665379--102665419 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
102665369 GTATTTACCT
102665379 TGTTAATATTAGAT-TGA
1 TGTTAATATTA-ATGTGA
102665396 TGTTAATATTAATGTGA
1 TGTTAATATTAATGTGA
*
102665413 TGATAAT
1 TGTTAAT
102665420 TACATGGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (17 bp):
TGTTAATATTAATGTGA
Found at i:102665556 original size:39 final size:39
Alignment explanation
Indices: 102665513--102665592 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
102665503 ACTTATGGTA
102665513 TATGTTGTTCTCAATTTGGCTAGTATAAGGCTAGGTAAT
1 TATGTTGTTCTCAATTTGGCTAGTATAAGGCTAGGTAAT
*
102665552 TATGTTGTTCTCAATTTGGCTAGTATAAGGTTAGGTAAT
1 TATGTTGTTCTCAATTTGGCTAGTATAAGGCTAGGTAAT
102665591 TA
1 TA
102665593 GCTTAAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.42
Consensus pattern (39 bp):
TATGTTGTTCTCAATTTGGCTAGTATAAGGCTAGGTAAT
Found at i:102665980 original size:42 final size:42
Alignment explanation
Indices: 102665900--102665980 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
102665890 CGATACGGCC
* * *
102665900 GTGTGTATCAAGTCAGTGAGTCACACGGTCTGAGACACGACA
1 GTGTGTATCAAGTCAGAGAGTCACACAGTCTGACACACGACA
* * *
102665942 GTGTTTATCAAGTCAGAGAGTTACACAGTTTGACACACG
1 GTGTGTATCAAGTCAGAGAGTCACACAGTCTGACACACG
102665981 GCCTACGACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (42 bp):
GTGTGTATCAAGTCAGAGAGTCACACAGTCTGACACACGACA
Found at i:102675900 original size:27 final size:28
Alignment explanation
Indices: 102675870--102675927 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
102675860 AATAGGGATC
102675870 TTTACTTTACT-TTTCTTT-TAGGATATT
1 TTTACTTT-CTATTTCTTTATAGGATATT
* * *
102675897 TTTAGTTTTTATTTCTTTATAGGTTATT
1 TTTACTTTCTATTTCTTTATAGGATATT
102675925 TTT
1 TTT
102675928 TACTAAGTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.04
27 14 0.54
28 11 0.42
ACGTcount: A:0.17, C:0.07, G:0.09, T:0.67
Consensus pattern (28 bp):
TTTACTTTCTATTTCTTTATAGGATATT
Found at i:102678574 original size:33 final size:32
Alignment explanation
Indices: 102678523--102678849 Score: 131
Period size: 33 Copynumber: 9.8 Consensus size: 32
102678513 AGATTCGTAG
* *
102678523 TGCCATAACCCAGTTATGGTCTTATCATT-AGAA
1 TGCCAT-AGCCAGCTATGGTCTTA-CATTCAGAA
* *
102678556 TGCCATAGCCTAGCTATGGTCTTACATATGAAAA
1 TGCCATAGCC-AGCTATGGTCTTACAT-TCAGAA
* * * * * *
102678590 CTGCCATGGTCCAACCATGGTCTTACGTTCATAG
1 -TGCCATAG-CCAGCTATGGTCTTACATTCAGAA
* *
102678624 TGCCATAACCAGTTATGGTCTTATCATT-AGAA
1 TGCCATAGCCAGCTATGGTCTTA-CATTCAGAA
* *
102678656 TGCCAGAGCCTAGCTATGGTCTTACATAT-AAACA
1 TGCCATAGCC-AGCTATGGTCTTACAT-TCAGA-A
* * * * * * *
102678690 CTGCTATGGTCCAACCATGGTCTTACATCCATAG
1 -TGCCATAG-CCAGCTATGGTCTTACATTCAGAA
* * * *
102678724 TGCCATAACTCAGTTATGGTCTTTTCATT-AAAA
1 TGCCATAGC-CAGCTATGGTC-TTACATTCAGAA
* * *
102678757 TGTCATAGCCCAGCTATGGTCTTACATATAAACAA
1 TGCCATAG-CCAGCTATGGTCTTACAT-T-CAGAA
* * * * *
102678792 TGCCATGGTCCAACCATGGTCTTACATTCATAG
1 TGCCATAG-CCAGCTATGGTCTTACATTCAGAA
* * *
102678825 TGTCATAACCCAGTTATGGTCTTAC
1 TGCCAT-AGCCAGCTATGGTCTTAC
102678850 CCGTCAATTC
Statistics
Matches: 216, Mismatches: 59, Indels: 38
0.69 0.19 0.12
Matches are distributed among these distances:
32 37 0.17
33 95 0.44
34 14 0.06
35 66 0.31
36 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (32 bp):
TGCCATAGCCAGCTATGGTCTTACATTCAGAA
Found at i:102678788 original size:101 final size:101
Alignment explanation
Indices: 102678515--102678848 Score: 537
Period size: 101 Copynumber: 3.3 Consensus size: 101
102678505 CATTCTTTAG
*
102678515 ATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
1 ATTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
102678580 CATATGAAA-ACTGCCATGGTCCAACCATGGTCTTAC
66 CATAT-AAACACTGCCATGGTCCAACCATGGTCTTAC
* *
102678616 GTTCATAGTGCCATAA-CCAGTTATGGTCTTATCATTAGAATGCCAGAGCCTAGCTATGGTCTTA
1 ATTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
*
102678680 CATATAAACACTGCTATGGTCCAACCATGGTCTTAC
66 CATATAAACACTGCCATGGTCCAACCATGGTCTTAC
* * * * * *
102678716 ATCCATAGTGCCATAACTCAGTTATGGTCTTTTCATTAAAATGTCATAGCCCAGCTATGGTCTTA
1 ATTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
*
102678781 CATATAAACAATGCCATGGTCCAACCATGGTCTTAC
66 CATATAAACACTGCCATGGTCCAACCATGGTCTTAC
*
102678817 ATTCATAGTGTCATAACCCAGTTATGGTCTTA
1 ATTCATAGTGCCATAACCCAGTTATGGTCTTA
102678849 CCCGTCAATT
Statistics
Matches: 213, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
99 3 0.01
100 92 0.43
101 118 0.55
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (101 bp):
ATTCATAGTGCCATAACCCAGTTATGGTCTTATCATTAGAATGCCATAGCCTAGCTATGGTCTTA
CATATAAACACTGCCATGGTCCAACCATGGTCTTAC
Found at i:102690436 original size:54 final size:54
Alignment explanation
Indices: 102690368--102690477 Score: 166
Period size: 54 Copynumber: 2.0 Consensus size: 54
102690358 GAGCTTGGCA
* *
102690368 AGTTGCGATCGTTGGCTTGGGCCAAGAGAACTGGGGTCGCCAGTGGGCTTGGTG
1 AGTTGCGATCGTTGGATTGGGCCAAGAGAACTGGGGTCACCAGTGGGCTTGGTG
* * * *
102690422 AGTTGCGATTGTTGGATTGGGCCTAGAGAATTGGGGTCACTAGTGGGCTTGGTG
1 AGTTGCGATCGTTGGATTGGGCCAAGAGAACTGGGGTCACCAGTGGGCTTGGTG
102690476 AG
1 AG
102690478 CTGTAATCGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.16, C:0.15, G:0.42, T:0.27
Consensus pattern (54 bp):
AGTTGCGATCGTTGGATTGGGCCAAGAGAACTGGGGTCACCAGTGGGCTTGGTG
Found at i:102690499 original size:54 final size:54
Alignment explanation
Indices: 102690375--102690533 Score: 144
Period size: 54 Copynumber: 2.9 Consensus size: 54
102690365 GCAAGTTGCG
* * * * *
102690375 ATCGTTGGC-TTGGGCCAAGAGAACTGGGGTCGCCAGTGGGCTTGGTGAGTTGCG
1 ATCGTT-GCATTGGGCCTAGAGAAATGGGGTCGCTAGTGGGCTTGGTGAGCTGCA
* * * * *
102690429 ATTGTTGGATTGGGCCTAGAGAATTGGGGTCACTAGTGGGCTTGGTGAGCTGTA
1 ATCGTTGCATTGGGCCTAGAGAAATGGGGTCGCTAGTGGGCTTGGTGAGCTGCA
* * * *
102690483 ATCGTT-CATTTTGGCCTAGCA-AAATAGGGTCGCTAGAGGGCCTGGTGAGCT
1 ATCGTTGCA-TTGGGCCTAG-AGAAATGGGGTCGCTAGTGGGCTTGGTGAGCT
102690534 ACAGTCATTG
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
53 2 0.02
54 82 0.96
55 1 0.01
ACGTcount: A:0.18, C:0.16, G:0.38, T:0.28
Consensus pattern (54 bp):
ATCGTTGCATTGGGCCTAGAGAAATGGGGTCGCTAGTGGGCTTGGTGAGCTGCA
Found at i:102705686 original size:43 final size:43
Alignment explanation
Indices: 102705649--102705796 Score: 192
Period size: 43 Copynumber: 3.4 Consensus size: 43
102705639 CCCAGATACA
*
102705649 GTCTTACATGTTATCACATATCGATGCCAATGTCCCAGACATG
1 GTCTTACATGTAATCACATATCGATGCCAATGTCCCAGACATG
* * * * *
102705692 GTCTTACACGAAATCATATAACGATGACAATGTCCCAGACATG
1 GTCTTACATGTAATCACATATCGATGCCAATGTCCCAGACATG
* *
102705735 GTCTTACACT-TAATCACA-ATACAATGCCAATGTCCTAGACATG
1 GTCTTACA-TGTAATCACATAT-CGATGCCAATGTCCCAGACATG
102705778 GTCTTACATGTAATCACAT
1 GTCTTACATGTAATCACAT
102705797 CTCAGTAATC
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
42 2 0.02
43 86 0.98
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
GTCTTACATGTAATCACATATCGATGCCAATGTCCCAGACATG
Found at i:102712136 original size:47 final size:47
Alignment explanation
Indices: 102712040--102712208 Score: 168
Period size: 47 Copynumber: 3.6 Consensus size: 47
102712030 ATTCGTACTA
* *
102712040 ATGCCATGTCCCAGACATGGTCTTACACTGAC--ACCTCT-ATACGTGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCA-A-G-GCCG
*
102712088 ATGCCATGTCCCAGACATGTCTTACGCTGGCTTACATCTCAAGGCCG
1 ATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGCCG
* * * * **
102712135 ATG-CATGTCCTAGAAATGTCTTACACTAGCTCT-TATCTCAATACCG
1 ATGCCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCAAGGCCG
*
102712181 ATGCCATCTCCCAGACATGTCTTACACT
1 ATGCCATGTCCCAGACATGTCTTACACT
102712209 AGCACACAAA
Statistics
Matches: 103, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
46 37 0.36
47 40 0.39
48 19 0.18
49 6 0.06
50 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGCCG
Found at i:102712210 original size:47 final size:47
Alignment explanation
Indices: 102712085--102712211 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 47
102712075 TCTATACGTG
* * *
102712085 CCGATGCCATGTCCCAGACATGTCTTACGCTGGCTTACATCTCAAGG
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGA
* * * *
102712132 CCGATG-CATGTCCTAGAAATGTCTTACACTAGCTCT-TATCTCAATA
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCAAGA
*
102712178 CCGATGCCATCTCCCAGACATGTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGC
102712212 ACACAAATAA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 37 0.54
47 31 0.46
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGA
Found at i:102714029 original size:33 final size:33
Alignment explanation
Indices: 102713980--102714096 Score: 139
Period size: 33 Copynumber: 3.6 Consensus size: 33
102713970 ATGGACCTTT
* * *
102713980 CCTTTTCTAGTTGTACACCCGAGGTGCACACT-C
1 CCTTTTCAAGTTGTACACACGAAGTGCACA-TAC
* *
102714013 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTTGTACACACGAAGTGCACATAC
* * *
102714046 CCTTTTCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAAGTTGTACACACGAAGTGCACATAC
102714079 CCTTTTCAAG-TGTACACA
1 CCTTTTCAAGTTGTACACA
102714097 TACAGTGTAC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
32 9 0.12
33 63 0.88
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (33 bp):
CCTTTTCAAGTTGTACACACGAAGTGCACATAC
Found at i:102714151 original size:33 final size:33
Alignment explanation
Indices: 102714108--102714220 Score: 181
Period size: 33 Copynumber: 3.4 Consensus size: 33
102714098 ACAGTGTACT
*
102714108 TTTCATTTTCAAATGGTATACACAAAGTATACC
1 TTTCCTTTTCAAATGGTATACACAAAGTATACC
*
102714141 TTTCCTTTTCAAATGGTATACACAAAATATACC
1 TTTCCTTTTCAAATGGTATACACAAAGTATACC
*
102714174 TTTCCTTTTCATATGGTATACACAAAGTATACC
1 TTTCCTTTTCAAATGGTATACACAAAGTATACC
**
102714207 TAACCTTTTCAAAT
1 TTTCCTTTTCAAAT
102714221 TGTACCATTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 73 1.00
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (33 bp):
TTTCCTTTTCAAATGGTATACACAAAGTATACC
Found at i:102714953 original size:21 final size:22
Alignment explanation
Indices: 102714907--102714949 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
102714897 TGTAAAAGTG
*
102714907 ATTTCTCTATTCATAACCTTTC
1 ATTTCTCTATTCATAAACTTTC
102714929 ATTT-TCTA-TCATAAACTTTC
1 ATTTCTCTATTCATAAACTTTC
102714949 A
1 A
102714950 ATTTACAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 4 0.20
22 4 0.20
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTTCTCTATTCATAAACTTTC
Found at i:102726893 original size:43 final size:43
Alignment explanation
Indices: 102726825--102726972 Score: 165
Period size: 43 Copynumber: 3.4 Consensus size: 43
102726815 CCTAGATACA
* * * **
102726825 GTCTTACATATTATCACATATCGATGCCAATGTTTCAGACATG
1 GTCTTACACATAATCACATAACGATGCCAATGTCCCAGACATG
* *
102726868 GTCTTACACGA-AATCATATAACGATGCCAATGTCCCAGACATA
1 GTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAGACATG
* *
102726911 GTCTTGCACATAATCACA-ATACAATGCCAATGTCCCAGACATG
1 GTCTTACACATAATCACATA-ACGATGCCAATGTCCCAGACATG
**
102726954 GTCTTACATGTAATCACAT
1 GTCTTACACATAATCACAT
102726973 CTCAGTAATC
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 2 0.02
43 84 0.97
44 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
GTCTTACACATAATCACATAACGATGCCAATGTCCCAGACATG
Found at i:102728200 original size:16 final size:17
Alignment explanation
Indices: 102728141--102728210 Score: 56
Period size: 16 Copynumber: 4.1 Consensus size: 17
102728131 TGGTTCCAAA
102728141 AACACAAATTTGATAATT
1 AACACAAATTTGA-AATT
* **
102728159 AAACATAAAAAT-AAATTT
1 -AACACAAATTTGAAA-TT
*
102728177 AATA-AAATTT-AAATT
1 AACACAAATTTGAAATT
102728192 AACACAAATTTGAAATT
1 AACACAAATTTGAAATT
102728209 AA
1 AA
102728211 AATTCTTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
15 5 0.12
16 13 0.32
17 12 0.29
18 3 0.07
19 8 0.20
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (17 bp):
AACACAAATTTGAAATT
Found at i:102734986 original size:40 final size:39
Alignment explanation
Indices: 102734942--102735067 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
102734932 GGGACTCAAC
*
102734942 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * * *
102734982 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAAT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
102735022 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
102735062 CCGGAT
1 CCGGAT
102735068 ATCATTCGAA
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
40 62 0.89
41 8 0.11
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:102734998 original size:80 final size:80
Alignment explanation
Indices: 102734881--102735067 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
102734871 GCTACACATT
* * * *
102734881 CAAATGCCTTCGGGACATAGCCTGG-TTACAGTAACTCGCACGAATGCCTTCGGGA-CTCAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTC-GGATCTCAACCC
*
102734944 GGATTTAGT-AGCTT-GCT
63 GGATTTAGTCA-CTTAGCA
* * * *
102734961 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAATCCG
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGATCTCAACCCG
102735025 GATTTAGTCACTTAGCA
64 GATTTAGTCACTTAGCA
102735042 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
102735068 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGATCTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:102737225 original size:2 final size:2
Alignment explanation
Indices: 102737218--102737257 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
102737208 TTGTGTATTC
102737218 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102737258 TCAACCAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102737405 original size:14 final size:14
Alignment explanation
Indices: 102737386--102737413 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102737376 AAATGCTTAA
102737386 AACTTACTAAGCCT
1 AACTTACTAAGCCT
102737400 AACTTACTAAGCCT
1 AACTTACTAAGCCT
102737414 CGAAAGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.07, T:0.29
Consensus pattern (14 bp):
AACTTACTAAGCCT
Found at i:102738480 original size:119 final size:119
Alignment explanation
Indices: 102738269--102738508 Score: 444
Period size: 119 Copynumber: 2.0 Consensus size: 119
102738259 CTTACTCTGC
*
102738269 TTAGGTGGGAGTTCATTCAAATGCTTGGGTTGCTCATCCTTGTAATCATAACTCCATTGGTTTTT
1 TTAGGTGGGAGTTCATTCAAACGCTTGGGTTGCTCATCCTTGTAATCATAACTCCATTGGTTTTT
*
102738334 CGAATCTCCTTACAATTAACTCAATTTGGATTGTTCGTACATCAACCTATAAAA
66 CGAATCTCCTTACAATTAACTCAATTTGGATTGTCCGTACATCAACCTATAAAA
*
102738388 TTAGGTGGGAGTTCATTCAAACGCTTGGGTTGCTCGTCCTTGTAATCATAACTCCATTGGTTTTT
1 TTAGGTGGGAGTTCATTCAAACGCTTGGGTTGCTCATCCTTGTAATCATAACTCCATTGGTTTTT
*
102738453 CGAATCTCCTTACTATTAACTCAATTTGGATTGTCCGTACATCAACCTATAAAA
66 CGAATCTCCTTACAATTAACTCAATTTGGATTGTCCGTACATCAACCTATAAAA
102738507 TT
1 TT
102738509 TCAAATTCAT
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
119 117 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (119 bp):
TTAGGTGGGAGTTCATTCAAACGCTTGGGTTGCTCATCCTTGTAATCATAACTCCATTGGTTTTT
CGAATCTCCTTACAATTAACTCAATTTGGATTGTCCGTACATCAACCTATAAAA
Found at i:102738599 original size:37 final size:37
Alignment explanation
Indices: 102738530--102738631 Score: 161
Period size: 37 Copynumber: 2.7 Consensus size: 37
102738520 ATTAAATCTG
*
102738530 ATAATCAACAAGGTAAGTAAAAAAAATCAAAAATAAAAA
1 ATAATCAACAAGGTAAG--AAAAAAATAAAAAATAAAAA
102738569 ATAATCAACAAGGTAAGAAAAAAATAAAAAATAAAAA
1 ATAATCAACAAGGTAAGAAAAAAATAAAAAATAAAAA
*
102738606 ATAATCAACAAGGTAA-AAAATAATAA
1 ATAATCAACAAGGTAAGAAAAAAATAA
102738632 TAATCGTAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
36 9 0.15
37 35 0.57
39 17 0.28
ACGTcount: A:0.70, C:0.07, G:0.08, T:0.16
Consensus pattern (37 bp):
ATAATCAACAAGGTAAGAAAAAAATAAAAAATAAAAA
Found at i:102738640 original size:19 final size:19
Alignment explanation
Indices: 102738546--102738629 Score: 70
Period size: 19 Copynumber: 4.6 Consensus size: 19
102738536 AACAAGGTAA
102738546 GTAAAAAA-AATCAA-AA-
1 GTAAAAAATAATCAACAAC
* *
102738562 ATAAAAAATAATCAACAAG
1 GTAAAAAATAATCAACAAC
* *
102738581 GTAAGAAAAAAAT-AA-AAA
1 GTAA-AAAATAATCAACAAC
* *
102738599 ATAAAAAATAATCAACAAG
1 GTAAAAAATAATCAACAAC
102738618 GTAAAAAATAAT
1 GTAAAAAATAAT
102738630 AATAATCGTA
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
16 7 0.13
17 13 0.24
18 9 0.17
19 18 0.33
20 7 0.13
ACGTcount: A:0.71, C:0.06, G:0.07, T:0.15
Consensus pattern (19 bp):
GTAAAAAATAATCAACAAC
Found at i:102739061 original size:14 final size:14
Alignment explanation
Indices: 102739042--102739081 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
102739032 ATAATATTTT
102739042 AATTAAACTAATTA
1 AATTAAACTAATTA
102739056 AATT-AACTAACTTA
1 AATTAAACTAA-TTA
*
102739070 AATTAACCTAAT
1 AATTAAACTAAT
102739082 GGATTTTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 6 0.26
14 12 0.52
15 5 0.22
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (14 bp):
AATTAAACTAATTA
Found at i:102740170 original size:23 final size:22
Alignment explanation
Indices: 102740140--102740182 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
102740130 CAGAAACATG
**
102740140 TCCACCAACCCTGCACACCAAC
1 TCCACCAACCCAACACACCAAC
102740162 TCCATCCAACCCAACACACCA
1 TCCA-CCAACCCAACACACCA
102740183 TGTGGGGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.35, C:0.53, G:0.02, T:0.09
Consensus pattern (22 bp):
TCCACCAACCCAACACACCAAC
Found at i:102740232 original size:40 final size:40
Alignment explanation
Indices: 102740158--102740260 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
102740148 CCCTGCACAC
* * *
102740158 CAACTCCATCCAACCCAACACACC--ATGTGGGGATAAAAT
1 CAAC-CCACCCAACCCTACACACCAAATATGGGGATAAAAT
* *
102740197 CGACCCACCCATCCCTACACACCAAATATGGGGATAAAAT
1 CAACCCACCCAACCCTACACACCAAATATGGGGATAAAAT
*
102740237 CAACCCATCCAACCCTACACACCA
1 CAACCCACCCAACCCTACACACCA
102740261 TAGAGTACCG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
38 16 0.30
39 3 0.06
40 35 0.65
ACGTcount: A:0.38, C:0.39, G:0.10, T:0.14
Consensus pattern (40 bp):
CAACCCACCCAACCCTACACACCAAATATGGGGATAAAAT
Found at i:102747903 original size:35 final size:35
Alignment explanation
Indices: 102747876--102748041 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
102747866 CATGGAAAAG
*
102747876 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
102747911 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
102747946 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
102747986 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
102748021 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
102748042 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:102747995 original size:75 final size:75
Alignment explanation
Indices: 102747876--102748046 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
102747866 CATGGAAAAG
** *
102747876 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
102747935 CCATACTGAGC
65 CCATACCGAGC
102747946 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
102748011 CATACCGAGT
66 CATACCGAGC
**
102748021 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
102748047 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:102754765 original size:72 final size:72
Alignment explanation
Indices: 102754675--102754818 Score: 261
Period size: 72 Copynumber: 2.0 Consensus size: 72
102754665 ATTTTTCAAA
*
102754675 ACAACATGCATTAAACCAATCAAAGCATGCATATATTATACATTTATATATATAAATGAAACATA
1 ACAACATGCATTAAACCAATCAAAACATGCATATATTATACATTTATATATATAAATGAAACATA
102754740 CGAAACT
66 CGAAACT
* *
102754747 ACAACATGCATTAAACCAATCAAAACATGCATATATTATATATTTATGTATATAAATGAAACATA
1 ACAACATGCATTAAACCAATCAAAACATGCATATATTATACATTTATATATATAAATGAAACATA
102754812 CGAAACT
66 CGAAACT
102754819 GTGAACTTCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.49, C:0.16, G:0.07, T:0.28
Consensus pattern (72 bp):
ACAACATGCATTAAACCAATCAAAACATGCATATATTATACATTTATATATATAAATGAAACATA
CGAAACT
Found at i:102762222 original size:17 final size:17
Alignment explanation
Indices: 102762200--102762233 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
102762190 TGCCATTGCT
102762200 AAATCAATGGTAAGCGC
1 AAATCAATGGTAAGCGC
102762217 AAATCAATGGTAAGCGC
1 AAATCAATGGTAAGCGC
102762234 TAATGTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (17 bp):
AAATCAATGGTAAGCGC
Found at i:102776459 original size:46 final size:46
Alignment explanation
Indices: 102776392--102776558 Score: 231
Period size: 46 Copynumber: 3.8 Consensus size: 46
102776382 TGTAACCCGC
*
102776392 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
102776438 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* * *
102776481 -C-T--CTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
102776523 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
102776559 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
39 26 0.24
40 1 0.01
41 4 0.04
42 4 0.04
43 4 0.04
44 3 0.03
45 2 0.02
46 63 0.59
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:102776474 original size:20 final size:20
Alignment explanation
Indices: 102776449--102776514 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
102776439 CATAAGTGAA
102776449 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
* * * *
102776469 CTCGGATTACATCTC--TGAA
1 CTCGGACT-CAACTCAACGAG
102776488 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
*
102776508 TTCGGAC
1 CTCGGAC
102776515 ATTCGCATCC
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
18 5 0.15
19 9 0.26
20 15 0.44
21 5 0.15
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.21
Consensus pattern (20 bp):
CTCGGACTCAACTCAACGAG
Found at i:102776503 original size:85 final size:85
Alignment explanation
Indices: 102776399--102776560 Score: 288
Period size: 85 Copynumber: 1.9 Consensus size: 85
102776389 CGCCCATAAG
* *
102776399 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
102776464 ACGAGCTCGGATTACATCTC
66 ACGAGCTCGGATTACATCTC
*
102776484 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
102776549 ACGAGTTCGGAT
66 ACGAGCTCGGAT
102776561 GCCCAAATAT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (85 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATTACATCTC
Found at i:102778979 original size:30 final size:30
Alignment explanation
Indices: 102778935--102779023 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
102778925 CAAAGATAAT
102778935 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
102778964 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
102778994 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
102779024 CGATATTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:102778983 original size:15 final size:15
Alignment explanation
Indices: 102778935--102779014 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
102778925 CAAAGATAAT
*
102778935 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
102778949 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
102778964 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
102778979 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
102778994 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
102779009 AAGAAA
1 AAGAAA
102779015 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:102779023 original size:15 final size:15
Alignment explanation
Indices: 102778946--102779023 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
102778936 AGAAAACCGA
102778946 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
102778961 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
102778975 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
102778990 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
102779006 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
102779021 ATA
1 ATA
102779024 CGATATTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:102781884 original size:93 final size:93
Alignment explanation
Indices: 102781777--102781948 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
102781767 GCCCATAAGT
* *
102781777 GAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
102781841 ACAAGCTCGGATGCCTAGTTACATCTCTC
65 ACAAGCTCGGATGCCTAGTTACATCTCTC
* *
102781870 GAACTCGGACTCAACTTAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
102781935 CGAGTTCGGATGCC
66 CAAGCTCGGATGCC
102781949 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:102781944 original size:46 final size:45
Alignment explanation
Indices: 102781769--102781943 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
102781759 TGTAACCCGC
* *
102781769 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
102781815 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
102781861 ACATCTCTCGAACTCGGACTCAACTTAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
102781908 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
102781944 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 64 0.61
47 30 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:102781963 original size:46 final size:44
Alignment explanation
Indices: 102781820--102781963 Score: 98
Period size: 46 Copynumber: 3.1 Consensus size: 44
102781810 CGCATCCATA
* * *
102781820 AGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
102781869 --CGAACTCGGACTCAACTTAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
102781912 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
102781959 AGTGA
1 AGTGA
102781964 CATGTCACTT
Statistics
Matches: 74, Mismatches: 11, Indels: 23
0.69 0.10 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.43
47 26 0.35
48 4 0.05
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:102783691 original size:22 final size:22
Alignment explanation
Indices: 102783664--102783719 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
102783654 GAGTATGTGT
102783664 AAGAAGAAACAACACTGTAATG
1 AAGAAGAAACAACACTGTAATG
102783686 AAGAAGAAACAACACTGTAATG
1 AAGAAGAAACAACACTGTAATG
*
102783708 AACAAGAAACAA
1 AAGAAGAAACAA
102783720 AGCAAGATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.59, C:0.14, G:0.16, T:0.11
Consensus pattern (22 bp):
AAGAAGAAACAACACTGTAATG
Found at i:102786558 original size:18 final size:17
Alignment explanation
Indices: 102786535--102786568 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
102786525 TGTTAAAGGT
102786535 TTTAATAACTGAAAAAAA
1 TTTAATAA-TGAAAAAAA
*
102786553 TTTAATGATGAAAAAA
1 TTTAATAATGAAAAAA
102786569 TGTGTGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.59, C:0.03, G:0.09, T:0.29
Consensus pattern (17 bp):
TTTAATAATGAAAAAAA
Found at i:102787251 original size:5 final size:5
Alignment explanation
Indices: 102787241--102787266 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
102787231 ATTATGTGTG
102787241 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
102787267 CACACAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:102791706 original size:6 final size:5
Alignment explanation
Indices: 102791680--102791711 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
102791670 CCAATTTGTG
102791680 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT A
102791712 CACACAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:102793444 original size:55 final size:55
Alignment explanation
Indices: 102793281--102793445 Score: 233
Period size: 55 Copynumber: 3.0 Consensus size: 55
102793271 TCTTCTTAGT
* * * * *
102793281 TGTTGGAATATTGCTTCTTTAGAATTGATTTTTTATATGTTTAAATCCATTGTCA
1 TGTTGGAATACTGCTTCTTTTGAATTGATTATTTATATGTTTAAATCAATTGTTA
*
102793336 TGTTGGAATACTGCTTCTTTTGAATTGATTGTTTATATGTTT-AATCATATTGTTA
1 TGTTGGAATACTGCTTCTTTTGAATTGATTATTTATATGTTTAAATCA-ATTGTTA
** *
102793391 TGTTGGAATACTATTTCTTTTGAATCGATTATTTATATGTTTAAATCAATTGTTA
1 TGTTGGAATACTGCTTCTTTTGAATTGATTATTTATATGTTTAAATCAATTGTTA
102793446 CATAGCACAT
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
54 4 0.04
55 90 0.91
56 5 0.05
ACGTcount: A:0.26, C:0.08, G:0.15, T:0.52
Consensus pattern (55 bp):
TGTTGGAATACTGCTTCTTTTGAATTGATTATTTATATGTTTAAATCAATTGTTA
Found at i:102795592 original size:94 final size:94
Alignment explanation
Indices: 102795335--102795696 Score: 267
Period size: 94 Copynumber: 3.9 Consensus size: 94
102795325 GGATAAATTT
* * * *
102795335 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATATGCGTGCTGATGCATGTCCC
1 CCAATGCCATGTCCCAGACATGGCCTTACACTAGCTATCATAATAT--G-GCTGAAGCATGTCCC
* * *
102795399 AGACATGTCTTACACTAGCAC-AACTCT-TA-G
63 AGACATGTCTTACACTGGCACTCA-TCTGGATG
* * *** ** * * * * *
102795429 CCGATG-CGTGTCCCAGACA-CATCTTACGTTGGCTAT-AT-CTGTCGAGGCCGATGCATGTCCC
1 CCAATGCCATGTCCCAGACATGGCCTTACACTAGCTATCATAATAT---GGCTGAAGCATGTCCC
* * *
102795490 AGACATGTCTTACTCTGGCATTCATCTCTG-TG
63 AGACATGTCTTACACTGGCACTCATCT-GGATG
* * * *
102795522 TCAATGCCATGTCCCATACATGGCCTTACACTGGCTCTCATAATAT-GCTTGAAGCATGTCCCAG
1 CCAATGCCATGTCCCAGACATGGCCTTACACTAGCTATCATAATATGGC-TGAAGCATGTCCCAG
* * * *
102795586 ACATGTCTTACAGTAGCCCTCGTCTGGATG
65 ACATGTCTTACACTGGCACTCATCTGGATG
* ** *
102795616 CCGATGCCATGTCCCAGACATGGTTTTACACTAGCTATCATAATGTGGCTGAAGCATGTCCCAGA
1 CCAATGCCATGTCCCAGACATGGCCTTACACTAGCTATCATAATATGGCTGAAGCATGTCCCAGA
102795681 CATGTCTTACACTGGC
66 CATGTCTTACACTGGC
102795697 GCACAAATCA
Statistics
Matches: 209, Mismatches: 47, Indels: 24
0.75 0.17 0.09
Matches are distributed among these distances:
91 39 0.19
92 15 0.07
93 20 0.10
94 118 0.56
95 13 0.06
96 2 0.01
97 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
CCAATGCCATGTCCCAGACATGGCCTTACACTAGCTATCATAATATGGCTGAAGCATGTCCCAGA
CATGTCTTACACTGGCACTCATCTGGATG
Found at i:102800588 original size:11 final size:11
Alignment explanation
Indices: 102800572--102800622 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
102800562 TATACTTATT
102800572 AAATAATAATA
1 AAATAATAATA
102800583 AAATAATAA-A
1 AAATAATAATA
* ** *
102800593 ATATCTTATTA
1 AAATAATAATA
*
102800604 AAATATTAATA
1 AAATAATAATA
102800615 AAATAATA
1 AAATAATA
102800623 CTTATCTAAT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
10 6 0.19
11 25 0.81
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:102800637 original size:29 final size:26
Alignment explanation
Indices: 102800586--102800648 Score: 69
Period size: 29 Copynumber: 2.4 Consensus size: 26
102800576 AATAATAAAA
102800586 TAATAAAAT-ATCTTATTAAAAT-AT
1 TAATAAAATAATCTTATTAAAATAAT
102800610 TAATAAAATAATACTTATCTAATTAATAAT
1 TAATAAAATAAT-CTTAT-TAA--AATAAT
102800640 T-ATAAAATA
1 TAATAAAATA
102800649 TCATCAACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
24 9 0.27
25 2 0.06
26 5 0.15
27 3 0.09
29 11 0.33
30 3 0.09
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (26 bp):
TAATAAAATAATCTTATTAAAATAAT
Found at i:102805870 original size:2 final size:2
Alignment explanation
Indices: 102805858--102805893 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
102805848 CGACAATCAT
*
102805858 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102805894 CATGCATGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:102808060 original size:13 final size:13
Alignment explanation
Indices: 102808044--102808068 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102808034 TTTGTTAAAA
102808044 TTTTAATTAATAT
1 TTTTAATTAATAT
102808057 TTTTAATTAATA
1 TTTTAATTAATA
102808069 AATATATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAATTAATAT
Found at i:102811838 original size:18 final size:18
Alignment explanation
Indices: 102811815--102811850 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
102811805 TGCACCCTTA
102811815 CACTTATCA-TATTCATAT
1 CACTTATCACT-TTCATAT
102811833 CACTTATCACTTTCATAT
1 CACTTATCACTTTCATAT
102811851 AATGCACTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.44
Consensus pattern (18 bp):
CACTTATCACTTTCATAT
Found at i:102815436 original size:30 final size:30
Alignment explanation
Indices: 102815349--102815445 Score: 79
Period size: 29 Copynumber: 3.2 Consensus size: 30
102815339 AAACCCCGGC
* * **
102815349 ACATAGTGCCTGATATAATATGAACACTGGT
1 ACATAGTACCTGATA-AATATAAACACCAGT
* * * **
102815380 ATAAAGTACTTGAT-AATATAGTCACCAGT
1 ACATAGTACCTGATAAATATAAACACCAGT
**
102815409 ACATAGTACCTGATAAATATAAACACCAAC
1 ACATAGTACCTGATAAATATAAACACCAGT
102815439 ACATAGT
1 ACATAGT
102815446 GCTTAATACA
Statistics
Matches: 49, Mismatches: 16, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
29 21 0.43
30 18 0.37
31 10 0.20
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (30 bp):
ACATAGTACCTGATAAATATAAACACCAGT
Found at i:102825580 original size:2 final size:2
Alignment explanation
Indices: 102825573--102825608 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
102825563 TTATTTGATC
102825573 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102825609 TTGTGCATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102829149 original size:18 final size:20
Alignment explanation
Indices: 102829108--102829152 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
102829098 TATTTCAAGC
* *
102829108 TCAATATCAGTCAATATTTT
1 TCAATATCAATCAATATTTA
102829128 TCAATATCAATC-A-ATTTA
1 TCAATATCAATCAATATTTA
102829146 TCAATAT
1 TCAATAT
102829153 TATTCAGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 11 0.48
19 1 0.04
20 11 0.48
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.42
Consensus pattern (20 bp):
TCAATATCAATCAATATTTA
Found at i:102829158 original size:28 final size:28
Alignment explanation
Indices: 102829118--102829172 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
102829108 TCAATATCAG
* * *
102829118 TCAATATTTTTCAATATCAATCAATTTA
1 TCAATATTATTCAATAACAATAAATTTA
*
102829146 TCAATATTATTCAGTAACAATAAATTT
1 TCAATATTATTCAATAACAATAAATTT
102829173 TTCAGTAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.44
Consensus pattern (28 bp):
TCAATATTATTCAATAACAATAAATTTA
Found at i:102829178 original size:18 final size:18
Alignment explanation
Indices: 102829145--102829233 Score: 99
Period size: 18 Copynumber: 4.8 Consensus size: 18
102829135 CAATCAATTT
102829145 ATCAATATTATTCAGTAACA
1 ATCAAT-TT-TTCAGTAACA
*
102829165 ATAAATTTTTCAGTAACA
1 ATCAATTTTTCAGTAACA
* * *
102829183 ATCAGTTGTTCAATAACA
1 ATCAATTTTTCAGTAACA
102829201 ATCAATTATTT-AGTAACA
1 ATCAATT-TTTCAGTAACA
*
102829219 ATCAATTATTCAGTA
1 ATCAATTTTTCAGTA
102829234 CATTTATTCA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
17 2 0.03
18 47 0.81
19 4 0.07
20 5 0.09
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (18 bp):
ATCAATTTTTCAGTAACA
Found at i:102829442 original size:44 final size:44
Alignment explanation
Indices: 102829394--102829477 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
102829384 ACAGTAGCAG
102829394 TACGACACACATAGTGCCTCATCGACTCGAA-GTCGAAGTAACAA
1 TACGACACACATAGTGCCTCATCGACTC-AAGGTCGAAGTAACAA
* **
102829438 TACGACGCTTATAGTGCCTCATCGACTCAAGGTCGAAGTA
1 TACGACACACATAGTGCCTCATCGACTCAAGGTCGAAGTA
102829478 TCCCTGAACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (44 bp):
TACGACACACATAGTGCCTCATCGACTCAAGGTCGAAGTAACAA
Found at i:102830693 original size:3 final size:3
Alignment explanation
Indices: 102830678--102830774 Score: 55
Period size: 3 Copynumber: 33.7 Consensus size: 3
102830668 ATATATTAGT
* * *
102830678 TAA TAA TAT TAA TAA TAA TAA TAA TACA TTA TAA TAG TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* * *
102830723 T-A TAA T-T TAA TAA T-T TAA TAA T-T TAA T-A TAA -AA CTAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
*
102830763 TTA TAAA TAA TA
1 TAA T-AA TAA TA
102830775 TCTATTTAAT
Statistics
Matches: 70, Mismatches: 14, Indels: 20
0.67 0.13 0.19
Matches are distributed among these distances:
2 11 0.16
3 53 0.76
4 6 0.09
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:102830713 original size:13 final size:12
Alignment explanation
Indices: 102830687--102830774 Score: 53
Period size: 13 Copynumber: 7.4 Consensus size: 12
102830677 TTAATAATAT
*
102830687 TAATAATAATAA
1 TAATAATTATAA
102830699 TAATACATTATAA
1 TAATA-ATTATAA
*
102830712 TAGTAA-TATAA
1 TAATAATTATAA
102830723 T-ATAATT-TAA
1 TAATAATTATAA
102830733 TAAT--TTAATAA
1 TAATAATT-ATAA
* *
102830744 T-TTAATATAAAA
1 TAATAAT-TATAA
102830756 CTAATAATTATAAA
1 -TAATAATTAT-AA
102830770 TAATA
1 TAATA
102830775 TCTATTTAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 21
0.67 0.08 0.24
Matches are distributed among these distances:
9 2 0.03
10 8 0.14
11 13 0.22
12 10 0.17
13 19 0.33
14 6 0.10
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (12 bp):
TAATAATTATAA
Done.