Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 331 of 425
Found at i:102830713 original size:16 final size:15
Alignment explanation
Indices: 102830678--102830774 Score: 69
Period size: 16 Copynumber: 6.5 Consensus size: 15
102830668 ATATATTAGT
* *
102830678 TAATAATATTAATAA
1 TAATAATAATAATTA
102830693 TAATAATAATACATTA
1 TAATAATAATA-ATTA
* *
102830709 TAATAGTAATATAATA
1 TAATAATAATA-ATTA
*
102830725 TAAT-TTAATAATT-
1 TAATAATAATAATTA
*
102830738 TAATAAT-TTAA-TA
1 TAATAATAATAATTA
102830751 TAA-AACTAATAATTA
1 TAATAA-TAATAATTA
102830766 TAAATAATA
1 T-AATAATA
102830775 TCTATTTAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
12 3 0.05
13 11 0.17
14 6 0.09
15 18 0.28
16 24 0.38
17 2 0.03
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:102830737 original size:8 final size:8
Alignment explanation
Indices: 102830724--102830750 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
102830714 GTAATATAAT
102830724 ATAATTTA
1 ATAATTTA
102830732 ATAATTTA
1 ATAATTTA
102830740 ATAATTTA
1 ATAATTTA
102830748 ATA
1 ATA
102830751 TAAAACTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATAATTTA
Found at i:102830976 original size:31 final size:31
Alignment explanation
Indices: 102830940--102831002 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
102830930 TTTTAAGTAA
102830940 ATAAATAATTATAATACAAGTGTATGTATAT
1 ATAAATAATTATAATACAAGTGTATGTATAT
102830971 ATAAATAATTATAATACAAGTGTATGTATAT
1 ATAAATAATTATAATACAAGTGTATGTATAT
102831002 A
1 A
102831003 CATTATTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (31 bp):
ATAAATAATTATAATACAAGTGTATGTATAT
Found at i:102831119 original size:37 final size:37
Alignment explanation
Indices: 102831065--102831165 Score: 177
Period size: 37 Copynumber: 2.7 Consensus size: 37
102831055 TCAAAATATA
102831065 ATAAT-ATTAATAATAATATTTAAATAGAAAACCATG
1 ATAATAATTAATAATAATATTTAAATAGAAAACCATG
102831101 ATAATAATTAATAATAATATTTAAATAGAAAACCATG
1 ATAATAATTAATAATAATATTTAAATAGAAAACCATG
*
102831138 ATAATAATTAATAATAATAATTATAATA
1 ATAATAATTAATAATAATATTTA-AATA
102831166 ATAGATTAAT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
36 5 0.08
37 53 0.85
38 4 0.06
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (37 bp):
ATAATAATTAATAATAATATTTAAATAGAAAACCATG
Found at i:102832078 original size:14 final size:13
Alignment explanation
Indices: 102832039--102832089 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
102832029 TAGAATTGCC
*
102832039 ATTATAAAAATAA
1 ATTAAAAAAATAA
102832052 ATTAAAAAAATAA
1 ATTAAAAAAATAA
* *
102832065 ATTACGAAATATAAA
1 ATTA-AAAAAAT-AA
102832080 ATTAAAAAAA
1 ATTAAAAAAA
102832090 ACAAGATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 16 0.52
14 9 0.29
15 6 0.19
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (13 bp):
ATTAAAAAAATAA
Found at i:102832504 original size:25 final size:23
Alignment explanation
Indices: 102832465--102832522 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
102832455 CAAGACCCAC
**
102832465 AAAATTATAAATTTAGGGTGTTTGA
1 AAAATTA-AAATTTA-ACTGTTTGA
*
102832490 TAAATTAAAATTTTAACTGTTTGA
1 AAAATTAAAA-TTTAACTGTTTGA
102832514 AAAATTAAA
1 AAAATTAAA
102832523 GTTATTGTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 18 0.64
25 10 0.36
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.40
Consensus pattern (23 bp):
AAAATTAAAATTTAACTGTTTGA
Found at i:102834402 original size:28 final size:27
Alignment explanation
Indices: 102834371--102834424 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
102834361 ATAACTCCTT
102834371 TAATTATATAAATAAAATAATAAATATG
1 TAATTATAT-AATAAAATAATAAATATG
* *
102834399 TAATTATATAATGAAATAATATATAT
1 TAATTATATAATAAAATAATAAATAT
102834425 TTTATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (27 bp):
TAATTATATAATAAAATAATAAATATG
Found at i:102834537 original size:101 final size:101
Alignment explanation
Indices: 102834351--102834537 Score: 259
Period size: 100 Copynumber: 1.9 Consensus size: 101
102834341 TTTTTTTATT
*
102834351 TTTTTAATTAATAACTCCTTTAATTATATAAATAAAATAATAAATATGTAATTATATAATGAAAT
1 TTTTTAATTAATAACTCCTTTAATTATATAAATAAAATAATAAATATATAATTATATAATGAAAT
**
102834416 AATATATATTTTATTTTTATGATTATGTTAAAAATA
66 AATATATATTTTATCATTATGATTATGTTAAAAATA
** * * *
102834452 TTTTTAATTAATAACTCCTTTGTTTATA-AAATAAATTACTAAATATATAATTATATAATGAATT
1 TTTTTAATTAATAACTCCTTTAATTATATAAATAAAATAATAAATATATAATTATATAATGAAAT
** *
102834516 TTTTTATATATTTATCATTATG
66 AATATATAT-TTTATCATTATG
102834538 TTAAATATAT
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 38 0.51
101 36 0.49
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (101 bp):
TTTTTAATTAATAACTCCTTTAATTATATAAATAAAATAATAAATATATAATTATATAATGAAAT
AATATATATTTTATCATTATGATTATGTTAAAAATA
Found at i:102834582 original size:27 final size:27
Alignment explanation
Indices: 102834542--102834603 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
102834532 ATTATGTTAA
*
102834542 ATATATTTTATTTTTAAATAAATTTTTT
1 ATATA-TTTATTTTTAAATAAAATTTTT
*
102834570 GATATATTT-TTTTTATATAAAATTTTT
1 -ATATATTTATTTTTAAATAAAATTTTT
102834597 ATATATT
1 ATATATT
102834604 AAATAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 7 0.23
27 16 0.52
28 3 0.10
29 5 0.16
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (27 bp):
ATATATTTATTTTTAAATAAAATTTTT
Found at i:102834595 original size:15 final size:14
Alignment explanation
Indices: 102834552--102834607 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
102834542 ATATATTTTA
*
102834552 TTTTTAAATAAATT
1 TTTTTATATAAATT
* *
102834566 TTTTGATAT-ATTT
1 TTTTTATATAAATT
102834579 TTTTTATATAAAATT
1 TTTTTATAT-AAATT
*
102834594 TTTATATATTAAAT
1 TTTTTATA-TAAAT
102834608 AATTATTTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
13 11 0.33
14 7 0.21
15 14 0.42
16 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (14 bp):
TTTTTATATAAATT
Found at i:102837413 original size:16 final size:16
Alignment explanation
Indices: 102837378--102837424 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
102837368 ATGAACCCTA
102837378 AACATAAACTATAAAACG
1 AACATAAA--ATAAAACG
*
102837396 AACATAAAATATAACG
1 AACATAAAATAAAACG
102837412 AA-ATAAAATAAAA
1 AACATAAAATAAAA
102837425 AAAACTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 10 0.37
16 9 0.33
18 8 0.30
ACGTcount: A:0.68, C:0.11, G:0.04, T:0.17
Consensus pattern (16 bp):
AACATAAAATAAAACG
Found at i:102837419 original size:15 final size:16
Alignment explanation
Indices: 102837378--102837421 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
102837368 ATGAACCCTA
*
102837378 AACATAAACTATAAAACG
1 AACATAAA--ATATAACG
102837396 AACATAAAATATAACG
1 AACATAAAATATAACG
102837412 AA-ATAAAATA
1 AACATAAAATA
102837422 AAAAAAACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 8 0.32
16 9 0.36
18 8 0.32
ACGTcount: A:0.66, C:0.11, G:0.05, T:0.18
Consensus pattern (16 bp):
AACATAAAATATAACG
Found at i:102838052 original size:16 final size:15
Alignment explanation
Indices: 102838012--102838057 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
102838002 TTAGTGAATA
* *
102838012 AAATAAATTAAATAT
1 AAATAAAATATATAT
102838027 AAAT-AAATATATAT
1 AAATAAAATATATAT
102838041 GAAATAAAATATATAT
1 -AAATAAAATATATAT
102838057 A
1 A
102838058 GAATGATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 8 0.30
15 9 0.33
16 10 0.37
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (15 bp):
AAATAAAATATATAT
Found at i:102838382 original size:16 final size:16
Alignment explanation
Indices: 102838361--102838394 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102838351 TTGAGAGTAA
*
102838361 AAGAGTTTCAGTGTGT
1 AAGAGTATCAGTGTGT
*
102838377 AAGAGTATGAGTGTGT
1 AAGAGTATCAGTGTGT
102838393 AA
1 AA
102838395 ATTTTTGTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.32
Consensus pattern (16 bp):
AAGAGTATCAGTGTGT
Found at i:102843303 original size:16 final size:17
Alignment explanation
Indices: 102843277--102843315 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
102843267 CAAAAATTCC
102843277 ATGATGAATTAAATTG-A
1 ATGA-GAATTAAATTGAA
*
102843294 ATGAGAATTACATTGAA
1 ATGAGAATTAAATTGAA
102843311 ATGAG
1 ATGAG
102843316 TTAAATTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.46, C:0.03, G:0.21, T:0.31
Consensus pattern (17 bp):
ATGAGAATTAAATTGAA
Found at i:102844912 original size:24 final size:24
Alignment explanation
Indices: 102844885--102844952 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
102844875 AGAGCGCCCT
102844885 GTTATAAGCTCTTGGGAGCTTCCC
1 GTTATAAGCTCTTGGGAGCTTCCC
* * *
102844909 GTTATATGATTCTTGCGAGCTTCCC
1 GTTATAAG-CTCTTGGGAGCTTCCC
*
102844934 GTTA-ATAGCTCTTCGGAGC
1 GTTATA-AGCTCTTGGGAGC
102844953 ATCCTGATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
24 16 0.46
25 19 0.54
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (24 bp):
GTTATAAGCTCTTGGGAGCTTCCC
Found at i:102845084 original size:24 final size:25
Alignment explanation
Indices: 102845033--102845086 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
102845023 CCTTTTCATG
*
102845033 AGCTTCTCGATTAAAGGCTCTTGTA
1 AGCTTCTCGATTAAAGGCTCTCGTA
*
102845058 AGCTTCTCG-TTAATGGCTCTCCG-A
1 AGCTTCTCGATTAAAGGCTCT-CGTA
102845082 AGCTT
1 AGCTT
102845087 TTAGATATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (25 bp):
AGCTTCTCGATTAAAGGCTCTCGTA
Found at i:102847942 original size:16 final size:16
Alignment explanation
Indices: 102847921--102847951 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102847911 GTAAAAAATA
102847921 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
*
102847937 ATATAACATTTATAA
1 ATATAAAATTTATAA
102847952 GAAAAGGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:102848848 original size:14 final size:15
Alignment explanation
Indices: 102848829--102848857 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
102848819 ACCATGTGTC
102848829 TTTTTTTAA-ATTTT
1 TTTTTTTAATATTTT
102848843 TTTTTTTAATATTTT
1 TTTTTTTAATATTTT
102848858 ACTATATCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTTAATATTTT
Found at i:102848933 original size:2 final size:2
Alignment explanation
Indices: 102848921--102848957 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
102848911 GTATAAGATA
102848921 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102848958 TAATAAAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:102850248 original size:24 final size:25
Alignment explanation
Indices: 102850208--102850254 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
102850198 ATTAAATTGA
102850208 TAATATTTAGTCATAACTATAAATT
1 TAATATTTAGTCATAACTATAAATT
*
102850233 TAAT-TTTAG-CACTAACTTTAAA
1 TAATATTTAGTCA-TAACTATAAA
102850255 GAGGATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 14 0.70
25 4 0.20
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (25 bp):
TAATATTTAGTCATAACTATAAATT
Found at i:102854211 original size:2 final size:2
Alignment explanation
Indices: 102854204--102854229 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
102854194 ATGTCCAAAT
102854204 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
102854230 ACATCAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:102855832 original size:22 final size:22
Alignment explanation
Indices: 102855789--102855834 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
102855779 AAAATATAAA
*
102855789 TTTTAAAATATTTTAAAGATTT
1 TTTTAAAATATTTGAAAGATTT
*
102855811 TTTTAAATATATTTGATA-ATTT
1 TTTTAAA-ATATTTGAAAGATTT
102855833 TT
1 TT
102855835 AAAATTAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (22 bp):
TTTTAAAATATTTGAAAGATTT
Found at i:102870810 original size:14 final size:14
Alignment explanation
Indices: 102870791--102870854 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
102870781 TAAAGATAAC
*
102870791 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
102870805 AAGAAATCCAAGATA
1 AAGAAATCCGA-ATA
*
102870820 GAA-AAACCCAGAATA
1 -AAGAAATCC-GAATA
*
102870835 AAGAAATCAGAATA
1 AAGAAATCCGAATA
102870849 AAGAAA
1 AAGAAA
102870855 CCCAAGATAC
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
14 22 0.55
15 15 0.38
16 3 0.08
ACGTcount: A:0.64, C:0.12, G:0.14, T:0.09
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:102871714 original size:6 final size:6
Alignment explanation
Indices: 102871703--102871735 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
102871693 ATTCAACTCT
102871703 CATATA CATATA CATATA CATATA CATATA CAT
1 CATATA CATATA CATATA CATATA CATATA CAT
102871736 GTAACACAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:102877089 original size:35 final size:35
Alignment explanation
Indices: 102877043--102877111 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
102877033 ACCAGCACCC
102877043 GAAACTTGGTAACCCTAATAACATATCATTTGTAA
1 GAAACTTGGTAACCCTAATAACATATCATTTGTAA
102877078 GAAACTTGGTAACCCTAATAACATATCATTTGTA
1 GAAACTTGGTAACCCTAATAACATATCATTTGTA
102877112 TCCTATATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (35 bp):
GAAACTTGGTAACCCTAATAACATATCATTTGTAA
Found at i:102890815 original size:40 final size:41
Alignment explanation
Indices: 102890761--102890866 Score: 112
Period size: 40 Copynumber: 2.6 Consensus size: 41
102890751 CCGCACCAAG
*
102890761 GCCTACGGGACTTAACCCGGATATCACGATTTGCA-CA-AA-T
1 GCCTTCGGGACTTAACCCGGATATCA--ATTTGCAGCATAATT
* *
102890801 GCCTTCGGGTCTTAACCCGGATAT-AATTTTCAGCATAATT
1 GCCTTCGGGACTTAACCCGGATATCAATTTGCAGCATAATT
* * *
102890841 GTCTTCGGGGCTTAGCCCGGATATCA
1 GCCTTCGGGACTTAACCCGGATATCA
102890867 TTCAATTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
37 6 0.11
38 2 0.04
39 3 0.05
40 44 0.79
41 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (41 bp):
GCCTTCGGGACTTAACCCGGATATCAATTTGCAGCATAATT
Found at i:102893933 original size:44 final size:45
Alignment explanation
Indices: 102893843--102893971 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
102893833 GACAGAACGA
*
102893843 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
102893889 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
102893933 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
102893972 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:102901469 original size:40 final size:42
Alignment explanation
Indices: 102901415--102901521 Score: 114
Period size: 40 Copynumber: 2.6 Consensus size: 42
102901405 CCGCACCAAG
* *
102901415 GCCTACGGGACTTAACCCGGATATCACGATTTGCA-CA-AA-T
1 GCCTTCGGGACTTAACCCGGATATCA-AATTTGCAGCATAATT
* *
102901455 GCCTTCGGGTCTTAACCCGGATAT-AAATTTTCAGCATAATT
1 GCCTTCGGGACTTAACCCGGATATCAAATTTGCAGCATAATT
* * *
102901496 GTCTTCGGGGCTTAGCCCGGATATCA
1 GCCTTCGGGACTTAACCCGGATATCA
102901522 TTCAATTTCT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
38 6 0.11
39 3 0.05
40 24 0.43
41 22 0.39
42 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (42 bp):
GCCTTCGGGACTTAACCCGGATATCAAATTTGCAGCATAATT
Found at i:102909721 original size:20 final size:20
Alignment explanation
Indices: 102909698--102909735 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
102909688 AGGAGCACAA
102909698 GAGTGCAATTAGGGGCATCG
1 GAGTGCAATTAGGGGCATCG
*
102909718 GAGTGCAGTTAGGGGCAT
1 GAGTGCAATTAGGGGCAT
102909736 GAATATGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.13, G:0.42, T:0.21
Consensus pattern (20 bp):
GAGTGCAATTAGGGGCATCG
Found at i:102912731 original size:46 final size:46
Alignment explanation
Indices: 102912664--102912891 Score: 341
Period size: 46 Copynumber: 5.0 Consensus size: 46
102912654 AGTGTGCTCT
102912664 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
102912710 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
102912756 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
102912802 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
102912848 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
102912892 TCATGTCAAA
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 167 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:102915158 original size:224 final size:224
Alignment explanation
Indices: 102914768--102915215 Score: 790
Period size: 224 Copynumber: 2.0 Consensus size: 224
102914758 CTATATAAGT
*
102914768 AACCTTAGGGTTATCGGAATAAGGGGTTAGACATTAGACCTAGACTTAGATAGTTTTATTTTACT
1 AACCTTAGGGTCATCGGAATAAGGGGTTAGACATTAGACCTAGACTTAGATAGTTTTATTTTACT
102914833 TAGTTTTTATTTAGTTTTATTTTCATGTTCATGTAGTCAAAATTTTTCATGTTCCGATATGAAAA
66 TAGTTTTTATTTAGTTTTATTTTCATGTTCATGTAGTCAAAATTTTTCATGTTCCGATATGAAAA
* *
102914898 CAATTACGAGCAGAGATTGCTCCAAAGTCGCGTCTATATTTATTTAAGAGGTTTCTTCCACTTTC
131 CAATGACGAGCAGAGATTGCTCCAAAGTCGCGTCTATATTTATTCAAGAGGTTTCTTCCACTTTC
*
102914963 CTTGTTCTTTTATTTATATTTTCGTTAGC
196 CTTGTTCTTTTATTTATATTTTCATTAGC
102914992 AACCTTAGGGTCATCGGAATAAGGGGTTAGACATTAGACCTAGACTTAGATAGTTTTATTTTACT
1 AACCTTAGGGTCATCGGAATAAGGGGTTAGACATTAGACCTAGACTTAGATAGTTTTATTTTACT
* **
102915057 TAGTTTTTATTTAGTTTTATTTTTATGTTTGTGTAGTCAAAATTTTTCATGTTCCGATATGAAAA
66 TAGTTTTTATTTAGTTTTATTTTCATGTTCATGTAGTCAAAATTTTTCATGTTCCGATATGAAAA
* * *
102915122 CGATCGA-GAGCAGAGATTGCTCTAGAGTCGCGTCTATATTTATTCAAGAGGTTTCTTCCACTTT
131 CAAT-GACGAGCAGAGATTGCTCCAAAGTCGCGTCTATATTTATTCAAGAGGTTTCTTCCACTTT
102915186 CCTTGTTCTTTTATTTATATTTTCATTAGC
195 CCTTGTTCTTTTATTTATATTTTCATTAGC
102915216 CTGATCAACT
Statistics
Matches: 213, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
224 212 1.00
225 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (224 bp):
AACCTTAGGGTCATCGGAATAAGGGGTTAGACATTAGACCTAGACTTAGATAGTTTTATTTTACT
TAGTTTTTATTTAGTTTTATTTTCATGTTCATGTAGTCAAAATTTTTCATGTTCCGATATGAAAA
CAATGACGAGCAGAGATTGCTCCAAAGTCGCGTCTATATTTATTCAAGAGGTTTCTTCCACTTTC
CTTGTTCTTTTATTTATATTTTCATTAGC
Found at i:102915801 original size:24 final size:26
Alignment explanation
Indices: 102915768--102915815 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
102915758 ATTTGTAACT
*
102915768 TAATTATATTTAA-AATTATTTTTAG
1 TAATTATATTTAATAATAATTTTTAG
102915793 TAATT-TATTTAATAATAATTTTT
1 TAATTATATTTAATAATAATTTTT
102915816 TTCAATCCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (26 bp):
TAATTATATTTAATAATAATTTTTAG
Found at i:102915808 original size:12 final size:13
Alignment explanation
Indices: 102915768--102915808 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
102915758 ATTTGTAACT
102915768 TAATTATATTTAA
1 TAATTATATTTAA
* *
102915781 -AATTATTTTTAG
1 TAATTATATTTAA
102915793 TAATT-TATTTAA
1 TAATTATATTTAA
102915805 TAAT
1 TAAT
102915809 AATTTTTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 19 0.83
13 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (13 bp):
TAATTATATTTAA
Found at i:102919629 original size:26 final size:26
Alignment explanation
Indices: 102919593--102919643 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
102919583 TTTTCAAATC
102919593 GAGTCGAGTGAGACGGAATTCGAATT
1 GAGTCGAGTGAGACGGAATTCGAATT
*
102919619 GAGTCGAGTGAGATGGAATTCGAAT
1 GAGTCGAGTGAGACGGAATTCGAAT
102919644 CGAATTGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.10, G:0.35, T:0.24
Consensus pattern (26 bp):
GAGTCGAGTGAGACGGAATTCGAATT
Found at i:102920233 original size:31 final size:32
Alignment explanation
Indices: 102920189--102920248 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
102920179 AAGTTTTAAA
*
102920189 GAGTAAGAGTTTG-AGGAAAAATAATAAAGGG
1 GAGTAAAAGTTTGAAGGAAAAATAATAAAGGG
* * *
102920220 GAGTAAAATTTTGAAGGGAAAATATTAAA
1 GAGTAAAAGTTTGAAGGAAAAATAATAAA
102920249 AAAATTAGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 11 0.46
32 13 0.54
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (32 bp):
GAGTAAAAGTTTGAAGGAAAAATAATAAAGGG
Found at i:102920662 original size:23 final size:21
Alignment explanation
Indices: 102920636--102920681 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 21
102920626 ATTCAAAAAA
102920636 AATTAAGTTAACTCGAATAATTT
1 AATTAAGTTAACTC-AA-AATTT
*
102920659 AATTAATTTAACTCAAAATTT
1 AATTAAGTTAACTCAAAATTT
102920680 AA
1 AA
102920682 ATTTTTTTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.32
22 2 0.09
23 13 0.59
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (21 bp):
AATTAAGTTAACTCAAAATTT
Found at i:102922187 original size:90 final size:90
Alignment explanation
Indices: 102922053--102922289 Score: 404
Period size: 90 Copynumber: 2.6 Consensus size: 90
102922043 GATCTCTACT
* * *
102922053 TCTTTCTCATCC-CGTGCACCGTTGTTTGATTTTGCTTCAAGTAAATGCTCATCAATTACTCCAG
1 TCTTTCTCATCCTC-TACACCGTTGTTTGGTTCTGCTTCAAGTAAATGCTCATCAATTACTCCAG
*
102922117 CTGGCAACTCTTTGAACAAGTCGATC
65 CTGGCAACTCTTTGAACAAGTCAATC
102922143 TCTTTCTCATCCTCTACACCGTTGTTTGGTTCTGCTTCAAGTAAATGCTCATCAATTACTCCAGC
1 TCTTTCTCATCCTCTACACCGTTGTTTGGTTCTGCTTCAAGTAAATGCTCATCAATTACTCCAGC
102922208 TGGCAACTCTTTGAACAAGTCAATC
66 TGGCAACTCTTTGAACAAGTCAATC
* *
102922233 TCTTTCTCATCCTCTACACTGTAGTTTGGTTCTGCTTCAAGTAAATGCTCATCAATT
1 TCTTTCTCATCCTCTACACCGTTGTTTGGTTCTGCTTCAAGTAAATGCTCATCAATT
102922290 TTGGAAATGG
Statistics
Matches: 140, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
90 139 0.99
91 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.37
Consensus pattern (90 bp):
TCTTTCTCATCCTCTACACCGTTGTTTGGTTCTGCTTCAAGTAAATGCTCATCAATTACTCCAGC
TGGCAACTCTTTGAACAAGTCAATC
Found at i:102922993 original size:21 final size:22
Alignment explanation
Indices: 102922960--102923001 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
102922950 TCAGTCCACC
102922960 TTCTTGTTAGAGA-ATCAAGCTT
1 TTCTTGTTAGAGACA-CAAGCTT
102922982 TTCTTG-TAGAGACACAAGCT
1 TTCTTGTTAGAGACACAAGCT
102923002 CCTTGACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (22 bp):
TTCTTGTTAGAGACACAAGCTT
Found at i:102926924 original size:33 final size:33
Alignment explanation
Indices: 102926859--102926929 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
102926849 ACGGGCAGCA
* **
102926859 TGGTGATGGTGGTGGAAGCTTTTTATGTGGTGG
1 TGGTGATGGTGGTGGAAGCTCTGGATGTGGTGG
*
102926892 TGGTGATGGTGGTTGAAGCTCTGGAT-TAGGTGG
1 TGGTGATGGTGGTGGAAGCTCTGGATGT-GGTGG
102926925 TGGTG
1 TGGTG
102926930 GAGGAGACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 1 0.03
33 32 0.97
ACGTcount: A:0.13, C:0.04, G:0.46, T:0.37
Consensus pattern (33 bp):
TGGTGATGGTGGTGGAAGCTCTGGATGTGGTGG
Found at i:102929112 original size:31 final size:31
Alignment explanation
Indices: 102929048--102929144 Score: 149
Period size: 31 Copynumber: 3.1 Consensus size: 31
102929038 TTTCCTAAGG
*
102929048 TAAAAAAGACGCCTTTAATTTGGGAAAATGTCT
1 TAAAAAAGAAGCCTTTAATTTGGG--AATGTCT
*
102929081 TAAAAAAGAAGCTTTTAATTTGGGAATGTCT
1 TAAAAAAGAAGCCTTTAATTTGGGAATGTCT
*
102929112 TAAAAAATAAGCCTTTAATTTGGGAATGTCT
1 TAAAAAAGAAGCCTTTAATTTGGGAATGTCT
102929143 TA
1 TA
102929145 CCTTCTTTAT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
31 38 0.63
33 22 0.37
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (31 bp):
TAAAAAAGAAGCCTTTAATTTGGGAATGTCT
Found at i:102938195 original size:8 final size:8
Alignment explanation
Indices: 102938182--102938227 Score: 62
Period size: 8 Copynumber: 6.1 Consensus size: 8
102938172 GAGTTTATTC
102938182 AATATAAT
1 AATATAAT
102938190 AATATAAT
1 AATATAAT
*
102938198 ATTATAAT
1 AATATAAT
102938206 -A-AT-AT
1 AATATAAT
102938211 AATATAAT
1 AATATAAT
102938219 AATATAAT
1 AATATAAT
102938227 A
1 A
102938228 GATTATTATC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 2 0.06
6 3 0.09
7 2 0.06
8 26 0.79
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
AATATAAT
Found at i:102938204 original size:13 final size:13
Alignment explanation
Indices: 102938182--102938227 Score: 65
Period size: 13 Copynumber: 3.3 Consensus size: 13
102938172 GAGTTTATTC
102938182 AATATAATAATAT
1 AATATAATAATAT
102938195 AATATTATAATAATAT
1 -A-A-TATAATAATAT
102938211 AATATAATAATAT
1 AATATAATAATAT
102938224 AATA
1 AATA
102938228 GATTATTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
13 15 0.50
14 2 0.07
15 2 0.07
16 11 0.37
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AATATAATAATAT
Found at i:102938205 original size:16 final size:16
Alignment explanation
Indices: 102938184--102938222 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
102938174 GTTTATTCAA
102938184 TATAATAATATAATAT
1 TATAATAATATAATAT
102938200 TATAATAATATAATAT
1 TATAATAATATAATAT
*
102938216 AATAATA
1 TATAATA
102938223 TAATAGATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TATAATAATATAATAT
Found at i:102938845 original size:29 final size:31
Alignment explanation
Indices: 102938778--102938848 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 31
102938768 AATCTTAAAT
*
102938778 TTATACATA--AATTTTGATTTAATGTGTAA
1 TTATACATATGAATTTTAATTTAATGTGTAA
*
102938807 TT-TAATATATGAATTTTAATTT-A-GTGTAA
1 TTAT-ACATATGAATTTTAATTTAATGTGTAA
102938836 TTATACATATGAA
1 TTATACATATGAA
102938849 AACTTTGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
28 1 0.03
29 22 0.63
30 2 0.06
31 10 0.29
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.48
Consensus pattern (31 bp):
TTATACATATGAATTTTAATTTAATGTGTAA
Found at i:102943501 original size:20 final size:20
Alignment explanation
Indices: 102943476--102943526 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
102943466 AGAGGCACAC
* *
102943476 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTAGAACAT
102943496 GCCCGTGTGGCCTAGAACAT
1 GCCCGTGTGGCCTAGAACAT
*
102943516 GTCCGTGTGGC
1 GCCCGTGTGGC
102943527 TTGCCCGTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.29, G:0.37, T:0.22
Consensus pattern (20 bp):
GCCCGTGTGGCCTAGAACAT
Found at i:102944073 original size:13 final size:13
Alignment explanation
Indices: 102944055--102944090 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
102944045 GACAATTAGT
102944055 AAATCATACATAC
1 AAATCATACATAC
*
102944068 AAATCATACATAT
1 AAATCATACATAC
102944081 AAATTCATAC
1 AAA-TCATAC
102944091 CAAACTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATCATACATAC
Found at i:102944517 original size:37 final size:39
Alignment explanation
Indices: 102944423--102944519 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 39
102944413 CACACCTGAA
102944423 TGGCGACCAATGCCTCATCGGATAGTTCGAAGCAAATAAG
1 TGGCGACCAATGCCTCATCGGATAGTTCGAAGC-AATAAG
* * *
102944463 TGACGACCAATGTCTCATCGGCTAAG-TCGAAGC-A-AAG
1 TGGCGACCAATGCCTCATCGGAT-AGTTCGAAGCAATAAG
*
102944500 TGGCGACCAAAGCCTCATCG
1 TGGCGACCAATGCCTCATCG
102944520 AATCTATCCG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
37 20 0.40
38 1 0.02
40 27 0.54
41 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.19
Consensus pattern (39 bp):
TGGCGACCAATGCCTCATCGGATAGTTCGAAGCAATAAG
Found at i:102945806 original size:3 final size:3
Alignment explanation
Indices: 102945792--102945825 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
102945782 TTATCTCAAT
102945792 TAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
102945826 GTAAATATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:102955721 original size:21 final size:21
Alignment explanation
Indices: 102955697--102955761 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
102955687 AAGTCTAGCT
102955697 GAAGCACACAAGTGCTAAACG
1 GAAGCACACAAGTGCTAAACG
*
102955718 GAAGC-C-CGAAG-GCT-AACT
1 GAAGCACAC-AAGTGCTAAACG
* * *
102955736 GAAGGACACAACTGTTAAACG
1 GAAGCACACAAGTGCTAAACG
102955757 GAAGC
1 GAAGC
102955762 CCGAAGGCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
18 7 0.21
19 7 0.21
20 7 0.21
21 12 0.36
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAACG
Found at i:102955755 original size:39 final size:39
Alignment explanation
Indices: 102955686--102955779 Score: 143
Period size: 39 Copynumber: 2.4 Consensus size: 39
102955676 TCTGAAACTT
* * *
102955686 GAAGTCTAGCTGAAGCACACAAGTGCTAAACGGAAGCCC
1 GAAGGCTAACTGAAGCACACAACTGCTAAACGGAAGCCC
* *
102955725 GAAGGCTAACTGAAGGACACAACTGTTAAACGGAAGCCC
1 GAAGGCTAACTGAAGCACACAACTGCTAAACGGAAGCCC
102955764 GAAGGCTAACTGAAGC
1 GAAGGCTAACTGAAGC
102955780 TCATCAGAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.37, C:0.23, G:0.27, T:0.13
Consensus pattern (39 bp):
GAAGGCTAACTGAAGCACACAACTGCTAAACGGAAGCCC
Found at i:102955835 original size:20 final size:19
Alignment explanation
Indices: 102955770--102955835 Score: 51
Period size: 21 Copynumber: 3.2 Consensus size: 19
102955760 GCCCGAAGGC
*
102955770 TAACTGAAGCTCATCAGAGT
1 TAACTGAAACTCAT-AGAGT
* * *
102955790 TGAACTGAAACCCCAAAAGGGT
1 T-AACTGAAA-CTC-ATAGAGT
102955812 TAACTGAAACTCATATGAGT
1 TAACTGAAACTCATA-GAGT
102955832 TAAC
1 TAAC
102955836 GGAAGCTCGT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
19 2 0.06
20 10 0.29
21 15 0.43
22 7 0.20
23 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (19 bp):
TAACTGAAACTCATAGAGT
Found at i:102962851 original size:39 final size:39
Alignment explanation
Indices: 102962792--102962931 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
102962782 ATCGTGATCT
* * *
102962792 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
102962831 GAAGCCCGAAGACTAACTGAAGCACACAAGTTCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
102962870 GAAGTCCGAAGGCTAACTGAAGCACACAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
102962909 GAAGCTCAAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
102962932 TCATCAGAGT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 90 1.00
ACGTcount: A:0.39, C:0.23, G:0.24, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:102962932 original size:18 final size:19
Alignment explanation
Indices: 102962843--102962934 Score: 73
Period size: 20 Copynumber: 4.7 Consensus size: 19
102962833 AGCCCGAAGA
* *
102962843 CTAACTGAAGCACACAAGTT
1 CTAACTGAAGCTCACAAG-G
*
102962863 CTAAACGGAAG-TC-CGAAGG
1 CT-AACTGAAGCTCAC-AAGG
*
102962882 CTAACTGAAGCACACAAGTG
1 CTAACTGAAGCTCACAAG-G
*
102962902 CTAAATGGAAGCTCA-AAGG
1 CTAACT-GAAGCTCACAAGG
102962921 CTAACTGAAGCTCA
1 CTAACTGAAGCTCA
102962935 TCAGAGTTGA
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
18 15 0.26
19 13 0.22
20 16 0.28
21 14 0.24
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (19 bp):
CTAACTGAAGCTCACAAGG
Found at i:102968800 original size:17 final size:18
Alignment explanation
Indices: 102968778--102968815 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
102968768 ATTCAAACAT
*
102968778 ACATTCCTATCATAA-AC
1 ACATTCATATCATAATAC
*
102968795 ACATTCATATTATAATAC
1 ACATTCATATCATAATAC
102968813 ACA
1 ACA
102968816 ATAAATTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.32
Consensus pattern (18 bp):
ACATTCATATCATAATAC
Found at i:102970052 original size:27 final size:27
Alignment explanation
Indices: 102970022--102970114 Score: 91
Period size: 27 Copynumber: 3.4 Consensus size: 27
102970012 TTATGAATGA
102970022 CTCACACAAGCCTTCGTATTTGGGTTG
1 CTCACACAAGCCTTCGTATTTGGGTTG
* * **
102970049 CTCACACAAGCTTTTGT-TTATGAAAATT-
1 CTCACACAAGCCTTCGTATT-TG--GGTTG
*
102970077 TTCACACAAGCCTTCGTATTTGGGTTG
1 CTCACACAAGCCTTCGTATTTGGGTTG
*
102970104 CTCACTCAAGC
1 CTCACACAAGC
102970115 TTCAGATCAG
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
26 4 0.08
27 26 0.52
28 16 0.32
29 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (27 bp):
CTCACACAAGCCTTCGTATTTGGGTTG
Found at i:102970099 original size:55 final size:54
Alignment explanation
Indices: 102969992--102970116 Score: 180
Period size: 55 Copynumber: 2.3 Consensus size: 54
102969982 CGGGACTATT
* *
102969992 TTGCTTACATAAGCTTTTGTTTATGAATGACTCACACAAGCCTTCGTATTTGGG
1 TTGCTCACACAAGCTTTTGTTTATGAATGACTCACACAAGCCTTCGTATTTGGG
**
102970046 TTGCTCACACAAGCTTTTGTTTATGAAAAT-TTTCACACAAGCCTTCGTATTTGGG
1 TTGCTCACACAAGCTTTTGTTTATG--AATGACTCACACAAGCCTTCGTATTTGGG
*
102970101 TTGCTCACTCAAGCTT
1 TTGCTCACACAAGCTT
102970117 CAGATCAGGG
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
54 23 0.36
55 38 0.59
56 3 0.05
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (54 bp):
TTGCTCACACAAGCTTTTGTTTATGAATGACTCACACAAGCCTTCGTATTTGGG
Found at i:102970404 original size:69 final size:69
Alignment explanation
Indices: 102970299--102970433 Score: 243
Period size: 69 Copynumber: 2.0 Consensus size: 69
102970289 GCACCGTTAC
102970299 CGTTATCATATCAATTCAAACCCCGTAGTAGCATACACAATTTACACATTTCACATAACATACCA
1 CGTTATCATATCAATTCAAACCCCGTAGTAGCATACACAATTTACACATTTCACATAACATACCA
102970364 TTAT
66 TTAT
* * *
102970368 CGTTATCATATCATTTCAAACCCCGTAGTAGTATACACAATTTACACATTTCACATAACATTCCA
1 CGTTATCATATCAATTCAAACCCCGTAGTAGCATACACAATTTACACATTTCACATAACATACCA
102970433 T
66 T
102970434 ATCCACTTCA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (69 bp):
CGTTATCATATCAATTCAAACCCCGTAGTAGCATACACAATTTACACATTTCACATAACATACCA
TTAT
Found at i:102971966 original size:16 final size:16
Alignment explanation
Indices: 102971945--102971978 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102971935 CCCACCCGCA
*
102971945 TTAATTTTTTAAAATT
1 TTAATTTTATAAAATT
*
102971961 TTAATTTTATATAATT
1 TTAATTTTATAAAATT
102971977 TT
1 TT
102971979 TTTAAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAATTTTATAAAATT
Found at i:102978738 original size:140 final size:140
Alignment explanation
Indices: 102978508--102978764 Score: 317
Period size: 140 Copynumber: 1.8 Consensus size: 140
102978498 TGTGTGCCAG
* *
102978508 TGTAAGACATGTCTAGGGCATGCATAGGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGGGA
1 TGTAAGACATGTCTAGGGCATGCATAGGCCACAATAT-AGAGCCAGTGTAAGACCATGTTAGGGA
* * *
102978573 CATGGCCTCGGCATTGAGACGAGAGCTAGTATAAGA-CATGTCTGGGACATGCATCGGCCTCGAG
65 CATGGCATCGGCATGGAGACGAGAGCTAGTATAAGACCATGTCTAGGACATGCATCGGCCTCGAG
102978637 ATGTAAACCAA
130 ATGTAAACCAA
* * *
102978648 TGTAAGACATGTCT-GGGACATGCATCA-GCTACAATAT-GTGTCAGTGTAAGACCATGTATAGG
1 TGTAAGACATGTCTAGGG-CATGCAT-AGGCCACAATATAGAGCCAGTGTAAGACCATGT-TAGG
* * * *
102978710 G-CATGGCATTGGCATGGATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATG
63 GACATGGCATCGGCATGGAGA--CGAGAGCTAGTATAAGACCATGTCTAGGACATG
102978765 GTGTCAGCCT
Statistics
Matches: 99, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
138 33 0.33
139 7 0.07
140 44 0.44
141 15 0.15
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (140 bp):
TGTAAGACATGTCTAGGGCATGCATAGGCCACAATATAGAGCCAGTGTAAGACCATGTTAGGGAC
ATGGCATCGGCATGGAGACGAGAGCTAGTATAAGACCATGTCTAGGACATGCATCGGCCTCGAGA
TGTAAACCAA
Found at i:102983979 original size:28 final size:28
Alignment explanation
Indices: 102983946--102984010 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
102983936 AACTATAATG
* *
102983946 ATTAAAATAAAGTTCAAAACAAA-ATAAA
1 ATTAAAA-AAAATTAAAAACAAAGATAAA
*
102983974 ATTAAAAAAAATTAAAAAGAAAGATAAA
1 ATTAAAAAAAATTAAAAACAAAGATAAA
102984002 A--AAAAAAAA
1 ATTAAAAAAAA
102984011 GAAAACAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 8 0.24
27 12 0.36
28 13 0.39
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (28 bp):
ATTAAAAAAAATTAAAAACAAAGATAAA
Found at i:102985641 original size:19 final size:19
Alignment explanation
Indices: 102985581--102985642 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
102985571 GAAAACAATG
102985581 ATAAT-AAACAATAAAGCTA
1 ATAATAAAACAATAAAG-TA
*
102985600 ATAA-AAATA-AACAAAGTA
1 ATAATAAA-ACAATAAAGTA
*
102985618 A-AATAAAACAATAAAGAA
1 ATAATAAAACAATAAAGTA
102985636 ATAATAA
1 ATAATAA
102985643 GAGTAATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
17 3 0.09
18 14 0.40
19 17 0.49
20 1 0.03
ACGTcount: A:0.71, C:0.06, G:0.05, T:0.18
Consensus pattern (19 bp):
ATAATAAAACAATAAAGTA
Found at i:102986196 original size:30 final size:30
Alignment explanation
Indices: 102986160--102986228 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
102986150 CGTGTGTCCA
102986160 GGCCGTGTGGTTTACACAACCGTATCACAC
1 GGCCGTGTGGTTTACACAACCGTATCACAC
*
102986190 GGCCGTGTAGTTTACACAACCGTATCACAC
1 GGCCGTGTGGTTTACACAACCGTATCACAC
102986220 GGCCGTGTG
1 GGCCGTGTG
102986229 CAATGTTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (30 bp):
GGCCGTGTGGTTTACACAACCGTATCACAC
Found at i:103009041 original size:15 final size:14
Alignment explanation
Indices: 103009017--103009048 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
103009007 ATTAAAAGTA
103009017 AAAAATAAAATAAT
1 AAAAATAAAATAAT
103009031 AAAAAT-AAA-AAT
1 AAAAATAAAATAAT
103009043 AAAAAT
1 AAAAAT
103009049 GGCTAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 3 0.17
14 6 0.33
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAAATAAAATAAT
Found at i:103014532 original size:27 final size:27
Alignment explanation
Indices: 103014500--103014562 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
103014490 AGTTGCTCTG
103014500 ACGATGGCACCACAAGGCAAAATGGTT
1 ACGATGGCACCACAAGGCAAAATGGTT
* *
103014527 ACGATGACACCACAAGGCACAATGGTT
1 ACGATGGCACCACAAGGCAAAATGGTT
*
103014554 GCGATGGCA
1 ACGATGGCA
103014563 GTGATCCGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.35, C:0.24, G:0.27, T:0.14
Consensus pattern (27 bp):
ACGATGGCACCACAAGGCAAAATGGTT
Found at i:103015958 original size:40 final size:40
Alignment explanation
Indices: 103015914--103015998 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
103015904 ACGACAAATT
* *
103015914 GGCTAAATATGGCACTTAGTGTGCGGTTCGACATAGCTTC
1 GGCTAAATATGGCACTTAGTGTACGATTCGACATAGCTTC
* * *
103015954 GGCTAAATATGGCACTTAGTGTACGATTTGAGATAGTTTC
1 GGCTAAATATGGCACTTAGTGTACGATTCGACATAGCTTC
103015994 GGCTA
1 GGCTA
103015999 TGTACGACAC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (40 bp):
GGCTAAATATGGCACTTAGTGTACGATTCGACATAGCTTC
Found at i:103016046 original size:28 final size:28
Alignment explanation
Indices: 103016006--103016115 Score: 132
Period size: 28 Copynumber: 3.9 Consensus size: 28
103015996 CTATGTACGA
* *
103016006 CACTTAGCGTGCGAGAAATTGGGTATGG
1 CACTTAGTGTGCGAGAAATTGAGTATGG
*
103016034 CACTTAGTGTGCGA-AACATTGAGAATGG
1 CACTTAGTGTGCGAGAA-ATTGAGTATGG
* * *
103016062 CACTTAATGTGCGAGATATTGAGTACGG
1 CACTTAGTGTGCGAGAAATTGAGTATGG
* *
103016090 CACTTAGTGTGCGAGATATCGAGTAT
1 CACTTAGTGTGCGAGAAATTGAGTAT
103016116 TCAACTGGCA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
27 2 0.03
28 67 0.96
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (28 bp):
CACTTAGTGTGCGAGAAATTGAGTATGG
Found at i:103017890 original size:24 final size:24
Alignment explanation
Indices: 103017863--103017932 Score: 71
Period size: 19 Copynumber: 3.2 Consensus size: 24
103017853 GAGATATTAA
103017863 ATTAAATTTAATATTTATCTAGAT
1 ATTAAATTTAATATTTATCTAGAT
* * *
103017887 ATT-AATATGAGA--TAT-TA-A-
1 ATTAAATTTAATATTTATCTAGAT
103017905 ATTAAATTTAATATTTATCTAGAT
1 ATTAAATTTAATATTTATCTAGAT
103017929 ATTA
1 ATTA
103017933 GTATGAGATA
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
18 3 0.09
19 7 0.21
20 2 0.06
21 6 0.18
22 2 0.06
23 7 0.21
24 7 0.21
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (24 bp):
ATTAAATTTAATATTTATCTAGAT
Found at i:103017891 original size:42 final size:42
Alignment explanation
Indices: 103017843--103017971 Score: 231
Period size: 42 Copynumber: 3.1 Consensus size: 42
103017833 TTATTAATTA
103017843 ATATTAATATGAGATATTAAATTAAATTTAATATTTATCTAG
1 ATATTAATATGAGATATTAAATTAAATTTAATATTTATCTAG
103017885 ATATTAATATGAGATATTAAATTAAATTTAATATTTATCTAG
1 ATATTAATATGAGATATTAAATTAAATTTAATATTTATCTAG
* * *
103017927 ATATTAGTATGAGATATTAAATTTAATTTAATATTAATCTAG
1 ATATTAATATGAGATATTAAATTAAATTTAATATTTATCTAG
103017969 ATA
1 ATA
103017972 ATATTTTATT
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 84 1.00
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (42 bp):
ATATTAATATGAGATATTAAATTAAATTTAATATTTATCTAG
Found at i:103017908 original size:18 final size:19
Alignment explanation
Indices: 103017839--103017909 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 19
103017829 TATTTTATTA
103017839 ATTAATATTAATATGAGAT
1 ATTAATATTAATATGAGAT
* * *
103017858 ATTAA-ATTAAATTTAATATTT
1 ATTAATATT-AATATGAGA--T
103017879 ATCTAGATATTAATATGAGAT
1 AT-TA-ATATTAATATGAGAT
103017900 ATTAA-ATTAA
1 ATTAATATTAA
103017910 ATTTAATATT
Statistics
Matches: 40, Mismatches: 6, Indels: 13
0.68 0.10 0.22
Matches are distributed among these distances:
18 8 0.20
19 12 0.30
20 2 0.05
21 6 0.15
22 2 0.05
23 7 0.17
24 3 0.08
ACGTcount: A:0.48, C:0.01, G:0.07, T:0.44
Consensus pattern (19 bp):
ATTAATATTAATATGAGAT
Found at i:103021260 original size:58 final size:57
Alignment explanation
Indices: 103021125--103021244 Score: 154
Period size: 61 Copynumber: 2.1 Consensus size: 57
103021115 AGTGATTATC
* * *
103021125 TTAATATTAAATTCAATTTAATATTTATCTTGTAAATAAATATTCTATTAATTTAATAGAA
1 TTAATATTAAATTTAATCTAATATTTATCTTG--AATAAATATTATATTAATTTAAT--AA
*
103021186 TTAATATTAAATTTAATCTAATATTTATCTTG-ATAAGTATTATATTAATTTAAT-A
1 TTAATATTAAATTTAATCTAATATTTATCTTGAATAAATATTATATTAATTTAATAA
103021241 TTAA
1 TTAA
103021245 ATTGATTAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
55 5 0.09
58 20 0.36
61 30 0.55
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (57 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGAATAAATATTATATTAATTTAATAA
Found at i:103026922 original size:21 final size:21
Alignment explanation
Indices: 103026895--103026943 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
103026885 GTAACGCAGA
* *
103026895 TATATTTATTTTTTTTGTTCTT
1 TATATTTAGTATTTTTGTT-TT
103026917 TA-ATTTAGTATTTTTGTTTT
1 TATATTTAGTATTTTTGTTTT
103026937 TATATTT
1 TATATTT
103026944 TTCAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.17
21 18 0.75
22 2 0.08
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.73
Consensus pattern (21 bp):
TATATTTAGTATTTTTGTTTT
Found at i:103029746 original size:245 final size:245
Alignment explanation
Indices: 103029310--103029796 Score: 893
Period size: 245 Copynumber: 2.0 Consensus size: 245
103029300 TTCTTACCAT
*
103029310 TTCCGTTTTAGGTTGTAGCATATACCCCTAATAGTTCTCATTTGTTTTCTTCTTTGTTAAGTTGA
1 TTCCATTTTAGGTTGTAGCATATACCCCTAATAGTTCTCATTTGTTTTCTTCTTTGTTAAGTTGA
*
103029375 AATTTTATGCCACATTTGCCTGTGTTCCTGAATTGTGGCTAACTCCCCCAGGTTCGGAGTTTCAG
66 AATTTTATGCCACATTTGCCTGTGTTCCTGAATTGTGGCTAACTCCCCAAGGTTCGGAGTTTCAG
*
103029440 ACAATATCCCGTGCATGTTCTACATGCCATAATTTGAAAAAACTTTGCTAATACGTGTACATCCT
131 ACAATATCCCGTGCATGTTCTACATGCCATAATTTGAAAAAACTTTGCTAATACATGTACATCCT
103029505 TTGATCAGCGCTGCACTTAGTGCATTCATATTCAAATGAATTCTCAGTAG
196 TTGATCAGCGCTGCACTTAGTGCATTCATATTCAAATGAATTCTCAGTAG
* *
103029555 TTCCATTTTAGGTTGTAGCATATACCCCTAATATTTCTCATTTGTTTTCTTCTTTGTTAATTTGA
1 TTCCATTTTAGGTTGTAGCATATACCCCTAATAGTTCTCATTTGTTTTCTTCTTTGTTAAGTTGA
*
103029620 AATTTTATGCCACATTTGCCTGTGTTCCTGAATTGTGGCTAACTCCTCAAGGTTCGGAGTTTCAG
66 AATTTTATGCCACATTTGCCTGTGTTCCTGAATTGTGGCTAACTCCCCAAGGTTCGGAGTTTCAG
* *
103029685 ACAATATCCCTTGCTTGTTCTACATGCCATAATTTGAAAAAACTTTGCTAATACATGTACATCCT
131 ACAATATCCCGTGCATGTTCTACATGCCATAATTTGAAAAAACTTTGCTAATACATGTACATCCT
*
103029750 TTGATCAGCGTTGCACTTAGTGCATTCATATTCAAATGAATTCTCAG
196 TTGATCAGCGCTGCACTTAGTGCATTCATATTCAAATGAATTCTCAG
103029797 AAGTGTGTAA
Statistics
Matches: 233, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
245 233 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (245 bp):
TTCCATTTTAGGTTGTAGCATATACCCCTAATAGTTCTCATTTGTTTTCTTCTTTGTTAAGTTGA
AATTTTATGCCACATTTGCCTGTGTTCCTGAATTGTGGCTAACTCCCCAAGGTTCGGAGTTTCAG
ACAATATCCCGTGCATGTTCTACATGCCATAATTTGAAAAAACTTTGCTAATACATGTACATCCT
TTGATCAGCGCTGCACTTAGTGCATTCATATTCAAATGAATTCTCAGTAG
Found at i:103030363 original size:21 final size:21
Alignment explanation
Indices: 103030339--103030380 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
103030329 ATACCATCTG
103030339 ATTGCGTTCTGCATAACCAAT
1 ATTGCGTTCTGCATAACCAAT
103030360 ATTGCGTTCTGCATAACCAAT
1 ATTGCGTTCTGCATAACCAAT
103030381 TACATCCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (21 bp):
ATTGCGTTCTGCATAACCAAT
Found at i:103030997 original size:32 final size:32
Alignment explanation
Indices: 103030958--103031024 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
103030948 AAAAAAAAAG
103030958 TGTCGGCCAACTATTCCTGAAAACAGATATAT
1 TGTCGGCCAACTATTCCTGAAAACAGATATAT
103030990 TGTCGGCCAACTATTCCTGAAAACAGATATAT
1 TGTCGGCCAACTATTCCTGAAAACAGATATAT
103031022 TGT
1 TGT
103031025 TTTTCTGTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTCGGCCAACTATTCCTGAAAACAGATATAT
Found at i:103039376 original size:18 final size:19
Alignment explanation
Indices: 103039347--103039413 Score: 79
Period size: 18 Copynumber: 3.7 Consensus size: 19
103039337 CTCCATTAGG
103039347 TATTTAGAAAATTAGTTCA
1 TATTTAGAAAATTAGTTCA
***
103039366 TATTT-GAAAA-TA-AAAA
1 TATTTAGAAAATTAGTTCA
103039382 TATTTAGAAAATTAGTTCA
1 TATTTAGAAAATTAGTTCA
103039401 TATTT-GAAAATTA
1 TATTTAGAAAATTA
103039414 AAATATTCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
16 6 0.15
17 7 0.18
18 15 0.38
19 11 0.28
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.40
Consensus pattern (19 bp):
TATTTAGAAAATTAGTTCA
Found at i:103039386 original size:35 final size:35
Alignment explanation
Indices: 103039347--103039420 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
103039337 CTCCATTAGG
103039347 TATTTAGAAAATTAGTTCATATTTGAAAATAAAAA
1 TATTTAGAAAATTAGTTCATATTTGAAAATAAAAA
*
103039382 TATTTAGAAAATTAGTTCATATTTGAAAATTAAAA
1 TATTTAGAAAATTAGTTCATATTTGAAAATAAAAA
103039417 TATT
1 TATT
103039421 CAAGATACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (35 bp):
TATTTAGAAAATTAGTTCATATTTGAAAATAAAAA
Found at i:103040638 original size:20 final size:19
Alignment explanation
Indices: 103040576--103040639 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
103040566 GATTTTTATA
*
103040576 TTGTTATTG-TGTTT-TTG
1 TTGTTATTGATTTTTGTTG
*
103040593 TTGTTATT-ATTATTGTTG
1 TTGTTATTGATTTTTGTTG
*
103040611 ATTTTTATTGATTTTTGTTG
1 -TTGTTATTGATTTTTGTTG
103040631 TTAGTTATT
1 TT-GTTATT
103040640 ATTGTTAGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
17 11 0.30
18 3 0.08
19 9 0.24
20 14 0.38
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69
Consensus pattern (19 bp):
TTGTTATTGATTTTTGTTG
Found at i:103040646 original size:13 final size:13
Alignment explanation
Indices: 103040628--103040655 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
103040618 TTGATTTTTG
103040628 TTGTTAGTTATTA
1 TTGTTAGTTATTA
103040641 TTGTTAGTTATTA
1 TTGTTAGTTATTA
103040654 TT
1 TT
103040656 ATTGTTAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64
Consensus pattern (13 bp):
TTGTTAGTTATTA
Found at i:103040654 original size:16 final size:16
Alignment explanation
Indices: 103040590--103040663 Score: 71
Period size: 16 Copynumber: 4.4 Consensus size: 16
103040580 TATTGTGTTT
103040590 TTGTT-GTTATTATTA
1 TTGTTAGTTATTATTA
* *
103040605 TTGTTGATTTTTATTGATTT
1 TTGTT-A--GTTATT-ATTA
103040625 TTGTT-GTTAGTTATTA
1 TTGTTAGTTA-TTATTA
103040641 TTGTTAGTTATTATTA
1 TTGTTAGTTATTATTA
103040657 TTGTTAG
1 TTGTTAG
103040664 GTAAAAATCC
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
15 5 0.10
16 24 0.50
17 6 0.12
19 5 0.10
20 8 0.17
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.65
Consensus pattern (16 bp):
TTGTTAGTTATTATTA
Found at i:103040655 original size:36 final size:35
Alignment explanation
Indices: 103040587--103040655 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 35
103040577 TGTTATTGTG
*
103040587 TTTTTGTTGTTATTATTATTGTTGATTTTTATTGA
1 TTTTTGTTGTTATTATTATTGTTGATTATTATTGA
103040622 TTTTTGTTGTTAGTTATTATTGTT-AGTTATTATT
1 TTTTTGTTGTTA-TTATTATTGTTGA-TTATTATT
103040656 ATTGTTAGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
35 13 0.42
36 18 0.58
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.68
Consensus pattern (35 bp):
TTTTTGTTGTTATTATTATTGTTGATTATTATTGA
Found at i:103040701 original size:23 final size:26
Alignment explanation
Indices: 103040648--103040705 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
103040638 TTATTGTTAG
*
103040648 TTATTATTATTGTTAGGTAAAAATCC
1 TTATTATTATTGTTAGGTAAAAATAC
103040674 TTATTATTATTGTTA-GTAAAAA-AC
1 TTATTATTATTGTTAGGTAAAAATAC
103040698 -TATTATTA
1 TTATTATTA
103040706 GGATTGTTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 8 0.26
24 1 0.03
25 7 0.23
26 15 0.48
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (26 bp):
TTATTATTATTGTTAGGTAAAAATAC
Found at i:103040711 original size:26 final size:26
Alignment explanation
Indices: 103040656--103040713 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
103040646 AGTTATTATT
* * **
103040656 ATTGTTAGGTAAAAATCCTTATTATT
1 ATTGTTAGGTAAAAAACATTATTAGG
103040682 ATTGTTA-GTAAAAAACTATTATTAGG
1 ATTGTTAGGTAAAAAAC-ATTATTAGG
103040708 ATTGTT
1 ATTGTT
103040714 GGTTATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (26 bp):
ATTGTTAGGTAAAAAACATTATTAGG
Found at i:103040759 original size:39 final size:37
Alignment explanation
Indices: 103040674--103040765 Score: 107
Period size: 39 Copynumber: 2.4 Consensus size: 37
103040664 GTAAAAATCC
103040674 TTATTATTATTGTTAGTAAAAAACTATTATTAGGATTG
1 TTATTATTATTGTTAGTAAAAAACTATTATTA-GATTG
*
103040712 TTGGTTATTATTGTTAGTAAAAAACCCTAATTATT-G-TTAG
1 TT-ATTATTATTGTTAGTAAAAAA--CT-ATTATTAGATT-G
103040752 TTATTATTATTGTT
1 TTATTATTATTGTT
103040766 GATTTATATT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
38 2 0.04
39 33 0.70
40 4 0.09
41 2 0.04
42 6 0.13
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.50
Consensus pattern (37 bp):
TTATTATTATTGTTAGTAAAAAACTATTATTAGATTG
Found at i:103045138 original size:18 final size:18
Alignment explanation
Indices: 103045085--103045138 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
103045075 TCTGGCTGTG
* *
103045085 GCTCGGGCTCGGGCTCAA
1 GCTCAGGCTCGGGCTCTA
* *
103045103 GCTCAGGCTTGGGATCTA
1 GCTCAGGCTCGGGCTCTA
**
103045121 GCTGTGGCTCGGGCTCTA
1 GCTCAGGCTCGGGCTCTA
103045139 TATCCGTCAC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.11, C:0.28, G:0.37, T:0.24
Consensus pattern (18 bp):
GCTCAGGCTCGGGCTCTA
Found at i:103047354 original size:149 final size:149
Alignment explanation
Indices: 103047160--103047550 Score: 628
Period size: 150 Copynumber: 2.6 Consensus size: 149
103047150 TTTTTCAGTG
*
103047160 ATTTTGAC-CATTTGTTGGTATTTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTC
1 ATTTTGACAC-TTTGTTGGTA-TTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTT
*
103047224 GTATTTTATTTTTTATATTATTTTAGTACATAA-TGTGT-AATGTATTATTTAAGTGTTTTTTTA
64 GTATTTTATTTTTTATATTATTTTAGTACATAATTGTGTAAATGTATTATTTAA--GTATTTTTA
*
103047287 TATTAATTTAATAAATAACCCTG
127 TATTAATTTAATAAATAACCCTA
*
103047310 ATTTT-AGCACTTTGTTGGTATTTTTTTATTTTCGAATTTTATTTTTTAAAATATATTATTTTTG
1 ATTTTGA-CACTTTGTTGGTATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTTG
* *
103047374 TATTTTATTTTTTTATATTATTTTAGTACATAATTTTTTAAATGTATTATTTAAGTATTTTTATA
65 TATTTTA-TTTTTTATATTATTTTAGTACATAATTGTGTAAATGTATTATTTAAGTATTTTTATA
103047439 TTAATTTAATAAATAACCCTA
129 TTAATTTAATAAATAACCCTA
* *
103047460 ATTTTGACACTTTGTTGGTATTTTTTTATTTTTGGATTTTATTTTTTAAAATATACTATTTTTGT
1 ATTTTGACACTTTGTTGGTATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTTGT
103047525 ATTTTATTTTTTATATTATTTTAGTA
66 ATTTTATTTTTTATATTATTTTAGTA
103047551 AAAAAACCAC
Statistics
Matches: 226, Mismatches: 9, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
149 70 0.31
150 137 0.61
151 5 0.02
152 14 0.06
ACGTcount: A:0.27, C:0.05, G:0.08, T:0.60
Consensus pattern (149 bp):
ATTTTGACACTTTGTTGGTATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTTGT
ATTTTATTTTTTATATTATTTTAGTACATAATTGTGTAAATGTATTATTTAAGTATTTTTATATT
AATTTAATAAATAACCCTA
Found at i:103047383 original size:13 final size:13
Alignment explanation
Indices: 103047361--103047411 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
103047351 TTTTTTAAAA
103047361 TATATTATTTTTG
1 TATATTATTTTTG
* *
103047374 TATTTTATTTTTT
1 TATATTATTTTTG
*
103047387 TATATTATTTTAG
1 TATATTATTTTTG
* *
103047400 TACATAATTTTT
1 TATATTATTTTT
103047412 TAAATGTATT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (13 bp):
TATATTATTTTTG
Found at i:103047409 original size:26 final size:26
Alignment explanation
Indices: 103047361--103047412 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
103047351 TTTTTTAAAA
* ** *
103047361 TATATTATTTTTGTATTTTATTTTTT
1 TATATTATTTTAGTACATAATTTTTT
103047387 TATATTATTTTAGTACATAATTTTTT
1 TATATTATTTTAGTACATAATTTTTT
103047413 AAATGTATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (26 bp):
TATATTATTTTAGTACATAATTTTTT
Found at i:103047626 original size:15 final size:16
Alignment explanation
Indices: 103047585--103047623 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
103047575 CCAAAAAAGT
*
103047585 TTTTTTTCGTATTTTA
1 TTTTTTTCATATTTTA
103047601 TTTCTTTTCATATTTTA
1 TTT-TTTTCATATTTTA
103047618 TTTTTT
1 TTTTTT
103047624 CATTAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTTTTCATATTTTA
Found at i:103048165 original size:3 final size:3
Alignment explanation
Indices: 103048151--103048206 Score: 73
Period size: 3 Copynumber: 19.7 Consensus size: 3
103048141 GTGCCGCCTC
* *
103048151 CTT CTC CTT CTT CTT CTT C-T CTT CTT -TT CTT CTT CTC CTT CTT -TT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
103048196 CTT CTT CTT CT
1 CTT CTT CTT CT
103048207 CATTTTATTC
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 6 0.13
3 40 0.87
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:103048175 original size:11 final size:11
Alignment explanation
Indices: 103048159--103048203 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
103048149 TCCTTCTCCT
103048159 TCTTCTTCTTC
1 TCTTCTTCTTC
103048170 TCTTCTT-TTC
1 TCTTCTTCTTC
*
103048180 TTCTTCTCCTTC
1 -TCTTCTTCTTC
*
103048192 TTTTCTTCTTC
1 TCTTCTTCTTC
103048203 T
1 T
103048204 TCTCATTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
10 3 0.10
11 23 0.79
12 3 0.10
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (11 bp):
TCTTCTTCTTC
Found at i:103048180 original size:25 final size:26
Alignment explanation
Indices: 103048151--103048207 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
103048141 GTGCCGCCTC
*
103048151 CTTCTCCTTCTTCTTCTTCTCTTCTT
1 CTTCTCCTTCTCCTTCTTCTCTTCTT
* *
103048177 -TTCTTCTTCTCCTTCTTTTCTTCTT
1 CTTCTCCTTCTCCTTCTTCTCTTCTT
103048202 CTTCTC
1 CTTCTC
103048208 ATTTTATTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (26 bp):
CTTCTCCTTCTCCTTCTTCTCTTCTT
Found at i:103048183 original size:28 final size:28
Alignment explanation
Indices: 103048151--103048204 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
103048141 GTGCCGCCTC
*
103048151 CTTCTCCTTCTTCTTCTTC-TCTTCTTTT
1 CTTCTCCTCCTTCTT-TTCTTCTTCTTTT
*
103048179 CTTCTTCTCCTTCTTTTCTTCTTCTT
1 CTTCTCCTCCTTCTTTTCTTCTTCTT
103048205 CTCATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (28 bp):
CTTCTCCTCCTTCTTTTCTTCTTCTTTT
Found at i:103048193 original size:17 final size:17
Alignment explanation
Indices: 103048151--103048203 Score: 85
Period size: 17 Copynumber: 3.3 Consensus size: 17
103048141 GTGCCGCCTC
103048151 CTTCTCCTTC--TTCTT
1 CTTCTCCTTCTTTTCTT
103048166 CTTCT-CTTCTTTTCTT
1 CTTCTCCTTCTTTTCTT
103048182 CTTCTCCTTCTTTTCTT
1 CTTCTCCTTCTTTTCTT
103048199 CTTCT
1 CTTCT
103048204 TCTCATTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.11
15 5 0.14
16 10 0.29
17 16 0.46
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (17 bp):
CTTCTCCTTCTTTTCTT
Found at i:103048212 original size:17 final size:16
Alignment explanation
Indices: 103048151--103048212 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 16
103048141 GTGCCGCCTC
103048151 CTTCTCCTTCTTCTTCTT
1 CTTCT-CTT-TTCTTCTT
103048169 C-TCTTCTTTTCTTCTT
1 CTTC-TCTTTTCTTCTT
*
103048185 CTCCTTCTTTTCTTCTT
1 CTTC-TCTTTTCTTCTT
103048202 CTTCTCATTTT
1 CTTCTC-TTTT
103048213 ATTCCCGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
16 11 0.28
17 26 0.67
18 2 0.05
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.65
Consensus pattern (16 bp):
CTTCTCTTTTCTTCTT
Found at i:103050742 original size:2 final size:2
Alignment explanation
Indices: 103050735--103050767 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
103050725 TTCATTTCTT
*
103050735 TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103050768 TTTGAATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:103052224 original size:28 final size:28
Alignment explanation
Indices: 103052184--103052240 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
103052174 GACAGCTTGG
*
103052184 CGACTCCATTGGGGACCAATAAAAGAGT
1 CGACTCCACTGGGGACCAATAAAAGAGT
*
103052212 CGACTCCACTGGGGACCAATAAGAGAGT
1 CGACTCCACTGGGGACCAATAAAAGAGT
103052240 C
1 C
103052241 AAGCCGTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.26, T:0.16
Consensus pattern (28 bp):
CGACTCCACTGGGGACCAATAAAAGAGT
Found at i:103055005 original size:20 final size:20
Alignment explanation
Indices: 103054980--103055019 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
103054970 GGACTGTGGA
103054980 AGATCCCTATATTTTTAGAG
1 AGATCCCTATATTTTTAGAG
103055000 AGATCCCTATATTTTTAGAG
1 AGATCCCTATATTTTTAGAG
103055020 CTAATTTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (20 bp):
AGATCCCTATATTTTTAGAG
Found at i:103057948 original size:88 final size:87
Alignment explanation
Indices: 103057799--103058473 Score: 917
Period size: 88 Copynumber: 7.7 Consensus size: 87
103057789 TGAATTCACT
* * *
103057799 AGCCTTAACCCCCTAAGCAGTATGGAAACAGACTGGAAATTACAGATCTTATCTCCTTAAGCAGT
1 AGCCTTAA-CCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
103057864 AGTAGAGCAGATCAAAGACGGTG
65 AGTGGAGCAGATCGAAGACGGTG
103057887 AGCCTTAACCCCGTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAACCCC-TAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
103057952 AGTGGAACAGATCAAAGACGGTG
65 AGTGGAGCAGATCGAAGACGGTG
* *
103057975 AGCCTTAACCCCTTAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCCAAGCAGT
1 AGCCTTAACCCC-TAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
** *
103058040 AGTGGAATAAATCGAAGACGGTG
65 AGTGGAGCAGATCGAAGACGGTG
* *
103058063 AGCCTTAACCCTCTAAGCAGTAAGGAAACAGGCTGGAAATTACAGATCTTATCTCCCCAAGCAGT
1 AGCCTTAACCC-CTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
*
103058128 AGTGGAACAGATCGAAGACGGTG
65 AGTGGAGCAGATCGAAGACGGTG
* * * * * *
103058151 AGCCTTAACCCCCTAAGTAGTAGGGAGATAGGCTGGAAATTACAAATCTCATCTCCCTAACCAGT
1 AGCCTTAA-CCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
103058216 AGTGGAGCAAATCAAAGACGGTG
65 AGTGGAGCAGATCGAAGACGGTG
* * *
103058239 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCTCTAA-CGGT
1 AGCCTTAA-CCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
103058303 AGTGGAGCGGATCGAAGACAGTG
65 AGTGGAGCAGATCGAAGACGGTG
* * *
103058326 AGCCTTATCTCCCTAAGCAGTAGGGAAACAGGCT-GAAGATTATAGATCTCATCTCCCTAAGCAG
1 AGCCTTAAC-CCCTAAGCAGTAGGGAAACAGGCTGGAA-ATTACAGATCTTATCTCCCTAAGCAG
* *
103058390 TAGTGGAGCGGATCGAAGATGGTG
64 TAGTGGAGCAGATCGAAGACGGTG
*
103058414 AGCCTTATCCCTCTAAGCAGTAGGGAAACAGGCT-GAAGATTACA-AGTCTTATCTCCCTAA
1 AGCCTTAACCC-CTAAGCAGTAGGGAAACAGGCTGGAA-ATTACAGA-TCTTATCTCCCTAA
103058474 AGTTACAGCG
Statistics
Matches: 532, Mismatches: 47, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
86 4 0.01
87 79 0.15
88 445 0.84
89 4 0.01
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (87 bp):
AGCCTTAACCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACGGTG
Found at i:103059651 original size:29 final size:30
Alignment explanation
Indices: 103059602--103059661 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
103059592 GTTTTTAGGG
*
103059602 TTTTTTTTTAAAAAAACAAAA-GGTTAAAA
1 TTTTTCTTTAAAAAAACAAAATGGTTAAAA
*
103059631 TTTTTCTTTAAACAAAA-AAAATGGTTTAAA
1 TTTTTCTTTAAA-AAAACAAAATGGTTAAAA
103059661 T
1 T
103059662 GATAAAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTTTCTTTAAAAAAACAAAATGGTTAAAA
Found at i:103060362 original size:2 final size:2
Alignment explanation
Indices: 103060355--103060389 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
103060345 GATCCTATTT
103060355 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103060390 GTGTGTTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:103062273 original size:18 final size:18
Alignment explanation
Indices: 103062250--103062285 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
103062240 AGTTGTCAAT
103062250 TTAGTTTTCATATGTTAA
1 TTAGTTTTCATATGTTAA
* *
103062268 TTAGTTTTTATATTTTAA
1 TTAGTTTTCATATGTTAA
103062286 CGCGTAATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.61
Consensus pattern (18 bp):
TTAGTTTTCATATGTTAA
Found at i:103067113 original size:15 final size:15
Alignment explanation
Indices: 103067093--103067125 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
103067083 TTTAATATCA
103067093 AATTGAAATAGAGTT
1 AATTGAAATAGAGTT
103067108 AATTGAAATAGAGTT
1 AATTGAAATAGAGTT
103067123 AAT
1 AAT
103067126 ATTTATTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (15 bp):
AATTGAAATAGAGTT
Found at i:103067163 original size:22 final size:23
Alignment explanation
Indices: 103067119--103067163 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
103067109 ATTGAAATAG
103067119 AGTTAATATTTATTGTTTAATGA
1 AGTTAATATTTATTGTTTAATGA
* *
103067142 AGTTAATTTTTA-TGTTTTATGA
1 AGTTAATATTTATTGTTTAATGA
103067164 TTTTGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (23 bp):
AGTTAATATTTATTGTTTAATGA
Found at i:103072905 original size:9 final size:8
Alignment explanation
Indices: 103072890--103072980 Score: 53
Period size: 8 Copynumber: 11.0 Consensus size: 8
103072880 TTGCTATTTT
103072890 TTATATTA
1 TTATATTA
103072898 TTACTATTA
1 TTA-TATTA
103072907 TTATTATTA
1 TTA-TATTA
103072916 TTTATATTA
1 -TTATATTA
*
103072925 TTAT-TATG
1 TTATAT-TA
103072933 TTATA-T-
1 TTATATTA
103072939 TTAGTATTA
1 TTA-TATTA
* *
103072948 TTTTTAATA
1 -TTATATTA
*
103072957 TTATATTT
1 TTATATTA
* *
103072965 TTTTACTA
1 TTATATTA
103072973 TTATATTA
1 TTATATTA
103072981 CTATTATCTT
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
6 3 0.05
7 4 0.06
8 29 0.46
9 22 0.35
10 5 0.08
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (8 bp):
TTATATTA
Found at i:103072908 original size:3 final size:3
Alignment explanation
Indices: 103072893--103073280 Score: 163
Period size: 3 Copynumber: 131.0 Consensus size: 3
103072883 CTATTTTTTA
* *
103072893 TAT TAT TAC TAT TAT TAT TAT TAT T-T ATAT TAT TAT TA- TGT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* * * * *
103072936 TATT TAG TAT TAT TTT TAA TAT TA- TAT T-T TTT TAC TAT TA- TAT
1 TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
103072979 TAC TAT TAT CT-T TGT TAT T-T TCT CTAT TAC TATT TAT TACT CTAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TA-T TAT TA-T -TAT
* * * * * * *
103073024 TTT TAA CAT TTT TAT TA- TAT TA- TAT T-T GTTT TTT TA- TCT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* *
103073066 TAT TAT TAT TAT T-T TA- TAT TAT TAT TA- TGT TA- TATT TAG TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* * * *
103073108 TAT TTT TAA TAT TA- TATT TAC TAT TA- TAT TAT TAT TAT CT-T TGT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * * * * *
103073152 TAT T-T TCT CTAT TAC TATT TAT TACT CTAT TTT TAA CAT TTT TAT TA-
1 TAT TAT TAT -TAT TAT TA-T TAT TA-T -TAT TAT TAT TAT TAT TAT TAT
* * * *
103073199 TAT TA- TATT TGT TTT TTT TAT ATCT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
103073245 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
103073281 ACAATTATAT
Statistics
Matches: 289, Mismatches: 57, Indels: 78
0.68 0.13 0.18
Matches are distributed among these distances:
2 37 0.13
3 223 0.77
4 25 0.09
5 4 0.01
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:103073066 original size:158 final size:157
Alignment explanation
Indices: 103072904--103073281 Score: 584
Period size: 158 Copynumber: 2.4 Consensus size: 157
103072894 ATTATTACTA
103072904 TTATTATTATTATTTATATTATTATTATGTTATATTTAGTATTATTTTTAATATTATATTTTTTT
1 TTATTATTATTATTTATATTATTATTATGTTATATTTAGTATTATTTTTAATATTATA----TTT
103072969 ACTATTATATTACTATTATCTTTGTTATTTTCTCTATTACTATTTATTACTCTATTTTTAACATT
62 ACTATTATATTACTATTATCTTTGTTATTTTCTCTATTACTATTTATTACTCTATTTTTAACATT
*
103073034 TTTATTATATTATATTTGTTTTTTTATCT-T
127 TTTATTATATTATATTTGTTTTTTTATATCT
103073064 ATTATTATTATTATTTTATATTATTATTATGTTATATTTAGTATTATTTTTAATATTATATTTAC
1 -TTATTATTATTA-TTTATATTATTATTATGTTATATTTAGTATTATTTTTAATATTATATTTAC
*
103073129 TATTATATTATTATTATCTTTGTTATTTTCTCTATTACTATTTATTACTCTATTTTTAACATTTT
64 TATTATATTACTATTATCTTTGTTATTTTCTCTATTACTATTTATTACTCTATTTTTAACATTTT
103073194 TATTATATTATATTTGTTTTTTTTATATC-
129 TATTATATTATATTTG-TTTTTTTATATCT
* * * *
103073223 TTATTATTATTA-TTATTATTATTATTATTATTAT-TATTATTATTATTATTATTATTATA
1 TTATTATTATTATTTA-TATTATTATTA-TGTTATAT-TTAGTATTATTTTTAATATTATA
103073282 CAATTATATA
Statistics
Matches: 205, Mismatches: 6, Indels: 15
0.91 0.03 0.07
Matches are distributed among these distances:
156 3 0.01
157 12 0.06
158 122 0.60
159 10 0.05
161 12 0.06
162 46 0.22
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (157 bp):
TTATTATTATTATTTATATTATTATTATGTTATATTTAGTATTATTTTTAATATTATATTTACTA
TTATATTACTATTATCTTTGTTATTTTCTCTATTACTATTTATTACTCTATTTTTAACATTTTTA
TTATATTATATTTGTTTTTTTATATCT
Found at i:103073360 original size:20 final size:20
Alignment explanation
Indices: 103073327--103073366 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
103073317 TTTATTTTAA
103073327 TATTTTTTTATATT-ATATT
1 TATTTTTTTATATTAATATT
*
103073346 TATTTTTTTGTTATTAATATT
1 TATTTTTTT-ATATTAATATT
103073367 ATTACTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 4 0.22
21 5 0.28
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (20 bp):
TATTTTTTTATATTAATATT
Found at i:103073491 original size:25 final size:27
Alignment explanation
Indices: 103073458--103073516 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
103073448 TTTTAATACC
*
103073458 CTATGTATTG-TGTATATTCTTAAT-A
1 CTATATATTGATGTATATTCTTAATAA
*
103073483 CTATATATTGTATGTATTTTCTTAATAA
1 CTATATATTG-ATGTATATTCTTAATAA
103073511 CTATAT
1 CTATAT
103073517 TATATGTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 9 0.31
27 13 0.45
28 7 0.24
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (27 bp):
CTATATATTGATGTATATTCTTAATAA
Found at i:103073522 original size:26 final size:26
Alignment explanation
Indices: 103073468--103073527 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
103073458 CTATGTATTG
*
103073468 TGTATATTCTTAATACTATATATTGTA
1 TGTATATTCTTAATAC-ATATATTATA
*
103073495 TGTATTTTCTTAATA-ACTATATTATA
1 TGTATATTCTTAATACA-TATATTATA
103073521 TGTATAT
1 TGTATAT
103073528 ATATACTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 14 0.48
27 14 0.48
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (26 bp):
TGTATATTCTTAATACATATATTATA
Found at i:103073859 original size:22 final size:22
Alignment explanation
Indices: 103073834--103073895 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
103073824 ATTTTTATAT
103073834 ATTATTATGTATATATTTTAAC
1 ATTATTATGTATATATTTTAAC
* *
103073856 ATTACTA-GTTATATATTTTTAC
1 ATTATTATG-TATATATTTTAAC
*
103073878 -TATCTTATGTATATATTT
1 AT-TATTATGTATATATTT
103073896 CAAATATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 2 0.06
22 30 0.91
23 1 0.03
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.56
Consensus pattern (22 bp):
ATTATTATGTATATATTTTAAC
Found at i:103075114 original size:35 final size:35
Alignment explanation
Indices: 103075047--103075214 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
103075037 TCCTCATTGA
*** *
103075047 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
103075083 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
103075123 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
103075158 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
103075193 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
103075215 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:103075173 original size:75 final size:73
Alignment explanation
Indices: 103075042--103075214 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
103075032 GGTTTTCCTC
*** * * **
103075042 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
103075107 TCAGTATGG
65 TCAGTATGG
*
103075116 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
103075180 ACTCAGTATGG
63 ACTCAGTATGG
103075191 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
103075215 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:103082451 original size:35 final size:35
Alignment explanation
Indices: 103082384--103082551 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
103082374 TCCTCATTGA
*** *
103082384 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
103082420 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
103082460 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
103082495 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
103082530 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
103082552 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:103082510 original size:75 final size:73
Alignment explanation
Indices: 103082379--103082551 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
103082369 GGTTTTCCTC
*** * * **
103082379 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
103082444 TCAGTATGG
65 TCAGTATGG
*
103082453 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
103082517 ACTCAGTATGG
63 ACTCAGTATGG
103082528 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
103082552 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:103083952 original size:2 final size:2
Alignment explanation
Indices: 103083945--103083983 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
103083935 AACACAATTT
103083945 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103083984 TACGTACATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:103091665 original size:55 final size:56
Alignment explanation
Indices: 103091599--103091708 Score: 186
Period size: 56 Copynumber: 2.0 Consensus size: 56
103091589 TGTCATGGTC
* *
103091599 TTTTCATTCTCATTAAAA-TTTTTCCCTCTCCTCACAGCCTGTTATTGCATATATA
1 TTTTCATTCTCATTAAAATTTTTTCCCTCTCCTCACAACCTGTCATTGCATATATA
*
103091654 TTTTCATTCTCATTAAAATTTTTTCCCTTTCCTCACAACCTGTCATTGCATATAT
1 TTTTCATTCTCATTAAAATTTTTTCCCTCTCCTCACAACCTGTCATTGCATATAT
103091709 CTCACATCAT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
55 18 0.35
56 33 0.65
ACGTcount: A:0.24, C:0.25, G:0.05, T:0.46
Consensus pattern (56 bp):
TTTTCATTCTCATTAAAATTTTTTCCCTCTCCTCACAACCTGTCATTGCATATATA
Found at i:103095309 original size:44 final size:44
Alignment explanation
Indices: 103095254--103095368 Score: 148
Period size: 44 Copynumber: 2.6 Consensus size: 44
103095244 AAAAGGAGGA
* *
103095254 ATCAATGTGAAAACCCGAAAAGGGCGTCTTGATAATAA-A-AAAAG
1 ATCAAGGTGAAAACCCGAAAAGGGCATCTTGAT--TAACACAAAAG
103095298 ATCAAGGTGAAAACCCGAAAAGGGCATCTTGATTAACACAAAAG
1 ATCAAGGTGAAAACCCGAAAAGGGCATCTTGATTAACACAAAAG
*
103095342 AT-TAGGATGAAAACCC-AAAAGGGCATC
1 ATCAAGG-TGAAAACCCGAAAAGGGCATC
103095369 CTAATGAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
42 3 0.05
43 15 0.23
44 47 0.72
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.17
Consensus pattern (44 bp):
ATCAAGGTGAAAACCCGAAAAGGGCATCTTGATTAACACAAAAG
Found at i:103096338 original size:73 final size:74
Alignment explanation
Indices: 103096227--103096559 Score: 355
Period size: 77 Copynumber: 4.3 Consensus size: 74
103096217 ATTTCTTTTT
* *
103096227 TTTTCAATTTCTGTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCAC
103096291 ACGCTGAGGTA
64 ACGCTGAGGTA
* * * *
103096302 ATTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCAAGAGGTGAGTTGAGCCTCGGG-GCAC
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACAC
103096366 GCTGAGGTA
66 GCTGAGGTA
* *
103096375 TTTTCAATCTTTATTTTTTAATTTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTC-A-----A---TTT-CTGT-T-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
103096440 CCTCGGGTCACACACTGAGGTA
54 CCTCGGG-CACACGCTGAGGTA
* * * *
103096462 TTTTTAATTTCTGTTTTTTAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGATCCTCGGCTCA
1 TTTTCAATTTCTG-TTTTTCA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GCA
*
103096527 CATGCTGAGGTA
63 CACGCTGAGGTA
*
103096539 TTTTCAGTTTCTGTTTTTCAA
1 TTTTCAATTTCTGTTTTTCAA
103096560 TTTCTGTTCA
Statistics
Matches: 217, Mismatches: 24, Indels: 34
0.79 0.09 0.12
Matches are distributed among these distances:
73 54 0.25
74 1 0.00
75 18 0.08
76 10 0.05
77 63 0.29
78 4 0.02
79 1 0.00
81 1 0.00
82 3 0.01
83 2 0.01
84 1 0.00
85 43 0.20
86 1 0.00
87 15 0.07
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACAC
GCTGAGGTA
Found at i:103096535 original size:77 final size:76
Alignment explanation
Indices: 103096407--103096959 Score: 410
Period size: 77 Copynumber: 7.0 Consensus size: 76
103096397 TTATGTTTCA
* *
103096407 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACACTGAGGTATTTTTAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACACGCTGAGGTATTTTCAATTT
103096472 CTGTTTTTTAAG
65 CTGTTTTTTAAG
* * *
103096484 AAAATCAACTCATATTGCGAGAGGTGAGTTGATCCTCGGCTCACATGCTGAGGTATTTTCAGTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-TCACACGCTGAGGTATTTTCAATTT
*
103096549 CTGTTTTTCAATTTCTG
65 CTGTTTTTTAA-----G
* * *
103096566 TTCATCAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGG--ACACGCTAAGGTAATGT
1 ------AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACACGCTGAGGT-ATTT
** *
103096629 T-AATTTCTGTTCTTCAAAAAAA
58 TCAATTTCTGTT-TT---TTAAG
* * * *
103096651 AAAATCAATTCATATTGCGAGAGGTGAGTTGAGACTCAAGT--CACGCTGAGGTAATTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACACGCTGAGGTATTTTCAATTT
* *
103096714 CTG-TTTGTCA-
65 CTGTTTTTTAAG
* * **
103096724 AAAATCAACTCATATTGGGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACACGCT-GAGGTATTTTCAATT
103096788 TCTGCTTTTCAAATTAAG
64 TCTG-TTTT----TTAAG
* * * ** *
103096806 TTTTAAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTC
1 -----AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-TCACACGCTGAGGTATTTTC
*
103096871 AATTT-T-TTCTTTTCAAA
60 AATTTCTGTT-TTTT-AAG
* * *
103096888 AAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCAGG--ACACGCTGAAGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACACGCTGAGGTATTTTCAATTT
103096951 CTGTTTTTT
65 CTGTTTTTT
103096960 TCAATTTATA
Statistics
Matches: 380, Mismatches: 54, Indels: 85
0.73 0.10 0.16
Matches are distributed among these distances:
73 36 0.09
74 2 0.01
75 38 0.10
76 7 0.02
77 106 0.28
78 6 0.02
79 54 0.14
81 4 0.01
82 3 0.01
84 2 0.01
85 2 0.01
86 22 0.06
87 58 0.15
88 36 0.09
89 2 0.01
90 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACACGCTGAGGTATTTTCAATTTC
TGTTTTTTAAG
Done.