Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 333 of 425
Found at i:103392073 original size:22 final size:22
Alignment explanation
Indices: 103392048--103392089 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
103392038 TAGGGGTTAT
*
103392048 GTTTTAGGATTTAT-AGTTTAGG
1 GTTTAAGGA-TTATGAGTTTAGG
103392070 GTTTAAGGATTATGAGTTTA
1 GTTTAAGGATTATGAGTTTA
103392090 AATTATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (22 bp):
GTTTAAGGATTATGAGTTTAGG
Found at i:103392107 original size:18 final size:19
Alignment explanation
Indices: 103392077--103392114 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
103392067 AGGGTTTAAG
103392077 GATTATGAGTTTAAATTAT
1 GATTATGAGTTTAAATTAT
103392096 GATTAT-AGTTTAAATTAT
1 GATTATGAGTTTAAATTAT
103392114 G
1 G
103392115 TAAGAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (19 bp):
GATTATGAGTTTAAATTAT
Found at i:103392329 original size:21 final size:21
Alignment explanation
Indices: 103392303--103392344 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
103392293 TTAAATTTTT
* *
103392303 GAGTTTATGGTTTATGGTTTA
1 GAGTTTAGGGTTTATGATTTA
*
103392324 GAGTTTGGGGTTTATGATTTA
1 GAGTTTAGGGTTTATGATTTA
103392345 TTGTTTTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (21 bp):
GAGTTTAGGGTTTATGATTTA
Found at i:103392557 original size:21 final size:21
Alignment explanation
Indices: 103392532--103392600 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
103392522 TTAGGGTGTA
103392532 GGTTTATGGTCTAATATTTAG
1 GGTTTATGGTCTAATATTTAG
* *
103392553 GGTTTATGGTCTAAAATTTGG
1 GGTTTATGGTCTAATATTTAG
*
103392574 GGTTTGA-GGTCTAATTTTTAG
1 GGTTT-ATGGTCTAATATTTAG
*
103392595 TGTTTA
1 GGTTTA
103392601 GGGGTAAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
20 1 0.02
21 39 0.95
22 1 0.02
ACGTcount: A:0.22, C:0.04, G:0.26, T:0.48
Consensus pattern (21 bp):
GGTTTATGGTCTAATATTTAG
Found at i:103393042 original size:7 final size:7
Alignment explanation
Indices: 103393025--103393080 Score: 96
Period size: 7 Copynumber: 8.0 Consensus size: 7
103393015 AATCTTCAAA
103393025 AAAAATT
1 AAAAATT
103393032 -AAAATT
1 AAAAATT
103393038 AAAAATT
1 AAAAATT
103393045 AAAAATT
1 AAAAATT
103393052 AAAAATT
1 AAAAATT
103393059 AAAAATT
1 AAAAATT
103393066 AAAAACTT
1 AAAAA-TT
103393074 AAAAATT
1 AAAAATT
103393081 TAATATTTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.13
7 34 0.72
8 7 0.15
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:103393303 original size:41 final size:41
Alignment explanation
Indices: 103393219--103393303 Score: 93
Period size: 41 Copynumber: 2.1 Consensus size: 41
103393209 TAAAAAAAAT
** *
103393219 AAAATTGAGCAATAGTAGCATTTTGCTTAAAAACGCCACAA
1 AAAATTGAGCAATAGTAGCATTTTGAGTAAAAACGACACAA
* * *
103393260 AAAATTGAGCTATAGT-GACATTTTTAGTAAAAAC-ACACTA
1 AAAATTGAGCAATAGTAG-CATTTTGAGTAAAAACGACACAA
103393300 AAAA
1 AAAA
103393304 GTTAAGCCAT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
40 9 0.24
41 28 0.76
ACGTcount: A:0.47, C:0.14, G:0.13, T:0.26
Consensus pattern (41 bp):
AAAATTGAGCAATAGTAGCATTTTGAGTAAAAACGACACAA
Found at i:103397110 original size:16 final size:15
Alignment explanation
Indices: 103397075--103397111 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
103397065 TGTTAATTTG
* *
103397075 ATTTTTGGATGTTCT
1 ATTTTTGGATGTACC
103397090 ATTTTTGGATGTACC
1 ATTTTTGGATGTACC
103397105 ATTTTTG
1 ATTTTTG
103397112 TTCATCTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.16, C:0.08, G:0.19, T:0.57
Consensus pattern (15 bp):
ATTTTTGGATGTACC
Found at i:103398121 original size:18 final size:19
Alignment explanation
Indices: 103398100--103398138 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
103398090 TATTGATATC
103398100 TTTA-TATTTAATTTAATT
1 TTTATTATTTAATTTAATT
* *
103398118 TTTATTATTTATTTTAGTT
1 TTTATTATTTAATTTAATT
103398137 TT
1 TT
103398139 GATTCTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTATTATTTAATTTAATT
Found at i:103411554 original size:22 final size:22
Alignment explanation
Indices: 103411524--103411568 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
103411514 TGTGCTTCTC
103411524 TTTACTCTCTAT-TTATCTTATT
1 TTTACTCTCTATATTAT-TTATT
* *
103411546 TTTATTCTCTTTATTATTTATT
1 TTTACTCTCTATATTATTTATT
103411568 T
1 T
103411569 CCTAATAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTACTCTCTATATTATTTATT
Found at i:103414056 original size:15 final size:15
Alignment explanation
Indices: 103414028--103414070 Score: 63
Period size: 14 Copynumber: 2.9 Consensus size: 15
103414018 CGTTTGTTTG
103414028 TCAGTAAAAT-ATTTT
1 TCAG-AAAATGATTTT
103414043 TCAGAAAATGATTTT
1 TCAGAAAATGATTTT
103414058 T-AGAAAATGATTT
1 TCAGAAAATGATTT
103414071 ACTTTTCTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.42
Consensus pattern (15 bp):
TCAGAAAATGATTTT
Found at i:103414084 original size:19 final size:19
Alignment explanation
Indices: 103414062--103414099 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
103414052 GATTTTTAGA
103414062 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
103414081 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
103414100 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:103417296 original size:7 final size:6
Alignment explanation
Indices: 103417266--103417297 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
103417256 TTTGCAACCC
103417266 AAGGGG AAGGGG AAGGGG AAGGGG AAAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG -AAGGGG A
103417298 GAAAAAGCGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:103418427 original size:18 final size:18
Alignment explanation
Indices: 103418395--103418433 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
103418385 ATTGATATGA
**
103418395 AGGATATATTTGAGGAGG
1 AGGATATATGAGAGGAGG
*
103418413 AGGATATATGAGAGGTGG
1 AGGATATATGAGAGGAGG
103418431 AGG
1 AGG
103418434 TGGGTGATAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.23
Consensus pattern (18 bp):
AGGATATATGAGAGGAGG
Found at i:103419408 original size:14 final size:14
Alignment explanation
Indices: 103419370--103419412 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
103419360 TAAAATGTAC
103419370 AATATAATTAAA-T
1 AATATAATTAAATT
103419383 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
103419398 AA-ATAATTTAATT
1 AATATAATTAAATT
103419411 AA
1 AA
103419413 CTATTTACTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:103423261 original size:38 final size:38
Alignment explanation
Indices: 103423202--103423491 Score: 157
Period size: 38 Copynumber: 6.9 Consensus size: 38
103423192 TTTCAAATTA
* *
103423202 ACATGTATAACCATGGCATATCCACTTAGTACCACGTT
1 ACATGTTTAACCATGGCATATCCACTTAGCACCACGTT
* * *
103423240 ACATGTTTAACCGTGGTATATCTACTTAGCACCACGTTAAT
1 ACATGTTTAACCATGGCATATCCACTTAGCACCACG-T--T
* * *
103423281 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCATGTT
1 --A-C-ATGT-T-TAACCATGGCATATCCACTTAGCACCACGTT
* * *
103423325 ACATGTTTTATCATGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTTTAACCATGGCATATCCACTTAGCACCACG-T--T
* *
103423366 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCATGGCATATCCACTTAGCACCACGTT
* *
103423410 ACATGTATCAATATGTGTAATCATGGAATATCCACTTAGCACCACGTT
1 ACATG--------T-T-TAACCATGGCATATCCACTTAGCACCACGTT
* * * *
103423458 ACACGTATAACCGTGGTATATCCACTTAGCACCA
1 ACATGTTTAACCATGGCATATCCACTTAGCACCA
103423492 TGTTTTTTCA
Statistics
Matches: 196, Mismatches: 30, Indels: 52
0.71 0.11 0.19
Matches are distributed among these distances:
38 79 0.40
39 3 0.02
40 6 0.03
41 4 0.02
42 2 0.01
43 2 0.01
44 4 0.02
45 6 0.03
46 4 0.02
47 51 0.26
48 35 0.18
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTTTAACCATGGCATATCCACTTAGCACCACGTT
Found at i:103423301 original size:47 final size:48
Alignment explanation
Indices: 103423247--103423460 Score: 245
Period size: 47 Copynumber: 4.7 Consensus size: 48
103423237 GTTACATGTT
* *
103423247 TAACCGTGGTATATCTACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGAATCAATATATG
*
103423294 TAACCGTGGCATATCCACTTAGCACCATGTTACATG------T-T-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * *
103423333 T-ATCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGAATCAATATATG
* *
103423379 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * *
103423427 TAATCATGGAATATCCACTTAGCACCACGTTACA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACA
103423461 CGTATAACCG
Statistics
Matches: 140, Mismatches: 15, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
37 3 0.02
38 26 0.19
39 1 0.01
40 1 0.01
41 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
45 1 0.01
46 1 0.01
47 56 0.40
48 47 0.34
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (48 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:103423304 original size:85 final size:85
Alignment explanation
Indices: 103423209--103423415 Score: 351
Period size: 85 Copynumber: 2.4 Consensus size: 85
103423199 TTAACATGTA
* * * *
103423209 TAACCATGGCATATCCACTTAGTACCACGTTACATGTTTAACCGTGGTATATCTACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
103423274 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * *
103423294 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTTATCATGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
103423359 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
103423379 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
103423416 ATCAATATGT
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 114 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:103423441 original size:48 final size:48
Alignment explanation
Indices: 103423334--103423465 Score: 194
Period size: 48 Copynumber: 2.8 Consensus size: 48
103423324 TACATGTTTT
* *
103423334 ATCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTA
1 ATCATGGAATATCCACTTAGCACCACGTTACATGTATCAATATATGTA
* * * *
103423381 ACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTA
1 ATCATGGAATATCCACTTAGCACCACGTTACATGTATCAATATATGTA
*
103423429 ATCATGGAATATCCACTTAGCACCACGTTACACGTAT
1 ATCATGGAATATCCACTTAGCACCACGTTACATGTAT
103423466 AACCGTGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 27 0.36
48 48 0.64
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (48 bp):
ATCATGGAATATCCACTTAGCACCACGTTACATGTATCAATATATGTA
Found at i:103423484 original size:133 final size:132
Alignment explanation
Indices: 103423247--103423491 Score: 364
Period size: 133 Copynumber: 1.8 Consensus size: 132
103423237 GTTACATGTT
* * * *
103423247 TAACCGTGGTATATCTACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGAATATCCAC
* * * * *
103423312 TTAGCACCATGTTACATGTTTTATCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
66 TTAGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
103423377 TG
131 TG
* * *
103423379 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCATGGAATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCATGGAATATCCA
*
103423444 CTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCA
65 CTTAGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCA
103423492 TGTTTTTTCA
Statistics
Matches: 99, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
132 30 0.30
133 69 0.70
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGAATATCCAC
TTAGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
TG
Found at i:103426813 original size:4 final size:4
Alignment explanation
Indices: 103426804--103426836 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
103426794 AACCGAGCCT
103426804 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
103426837 GTTTGTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:103428294 original size:7 final size:7
Alignment explanation
Indices: 103428279--103428398 Score: 82
Period size: 7 Copynumber: 17.9 Consensus size: 7
103428269 TTCTTTATTT
*
103428279 TATTTTA
1 TATTATA
103428286 TATTATA
1 TATTATA
103428293 TATTATA
1 TATTATA
103428300 TAATTAT-
1 T-ATTATA
103428307 T-TTATA
1 TATTATA
103428313 TATTACTCA
1 TATTA-T-A
*
103428322 TATTATT
1 TATTATA
103428329 TA-TATA
1 TATTATA
103428335 TATTATA
1 TATTATA
103428342 TATTAT-
1 TATTATA
*
103428348 T-TTCACA
1 TATT-ATA
103428355 TA-TATA
1 TATTATA
103428361 CT-TT-TA
1 -TATTATA
103428367 TATTATA
1 TATTATA
103428374 TATTATA
1 TATTATA
103428381 T-TTAT-
1 TATTATA
103428386 T-TTATA
1 TATTATA
103428392 TTATTAT
1 -TATTAT
103428399 GTCATTTTAC
Statistics
Matches: 92, Mismatches: 5, Indels: 31
0.72 0.04 0.24
Matches are distributed among these distances:
5 12 0.13
6 18 0.20
7 45 0.49
8 11 0.12
9 6 0.07
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (7 bp):
TATTATA
Found at i:103428311 original size:20 final size:19
Alignment explanation
Indices: 103428264--103428398 Score: 121
Period size: 20 Copynumber: 6.8 Consensus size: 19
103428254 ATTTTTATTG
* * * *
103428264 TTATTTTCTTTATTTTATT
1 TTATTTTATATATTATATA
*
103428283 TTATATTATATATTATATAA
1 TTATTTTATATATTATAT-A
103428303 TTATTTTATATATTACTCATA
1 TTATTTTATATATTA-T-ATA
103428324 TTATTTATATATATTATATA
1 TTATTT-TATATATTATATA
* *
103428344 TTATTTTCACATA-TATACTT
1 TTATTTT-ATATATTATA-TA
*
103428364 TTATATTATATATTATAT-
1 TTATTTTATATATTATATA
103428382 TTATTTTATATTATTAT
1 TTATTTTATA-TATTAT
103428399 GTCATTTTAC
Statistics
Matches: 97, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
18 9 0.09
19 30 0.31
20 38 0.39
21 9 0.09
22 11 0.11
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATTTTATATATTATATA
Found at i:103428340 original size:29 final size:27
Alignment explanation
Indices: 103428279--103428398 Score: 83
Period size: 29 Copynumber: 4.5 Consensus size: 27
103428269 TTCTTTATTT
*
103428279 TATTTTATATTATATATTATATAATTA
1 TATTATATATTATATATTATATAATTA
* *
103428306 TTTTATATATTACTCATATTAT-TTATATA
1 TATTATATATTA-T-ATATTATATAAT-TA
*
103428335 TATTATATATTAT-T-TTCACAT-A-TA
1 TATTATATATTATATATT-ATATAATTA
*
103428359 TACTTTTATATTATATATTATAT--TTA
1 TA-TTATATATTATATATTATATAATTA
*
103428385 TTTTATATTATTAT
1 TATTATA-TATTAT
103428399 GTCATTTTAC
Statistics
Matches: 74, Mismatches: 9, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
24 4 0.05
25 16 0.22
26 16 0.22
27 13 0.18
28 5 0.07
29 20 0.27
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (27 bp):
TATTATATATTATATATTATATAATTA
Found at i:103433642 original size:94 final size:92
Alignment explanation
Indices: 103433481--103433744 Score: 293
Period size: 94 Copynumber: 2.8 Consensus size: 92
103433471 TTATTTGTGT
*
103433481 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCC-CGA-TATGTAGAGCTAGTGTAAGACCATG
*
103433544 TCTGGGACATGATATCGGC-ATTGAGACAAGA
64 TCTGGGACATGACATCGGCTA-TGAG--AAGA
* *
103433575 GCTAGTGTATGACATGTCTGGGACATGCATCAGCCTCGAGATGTA-AGCTAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCC-CGATATGTAGAGCTAGTGTAAGACCATGT
* * *
103433639 CTGGGACATGGCATCGGCTATGAGATGT
65 CTGGGACATGACATCGGCTATGAGAAGA
* * * * *
103433667 GTTAGTGTAAGGCCATGTCTGGGACATGGCATCAACACAGATATGTGAGAGCCAGTGTAAGACCA
1 GCTAGTGTAA-GACATGTCTGGGACAT-GCATCAGC-CCGATATGT-AGAGCTAGTGTAAGACCA
*
103433732 TGTCTGGAACATG
62 TGTCTGGGACATG
103433745 GCGTCGACCT
Statistics
Matches: 146, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
92 10 0.07
93 15 0.10
94 89 0.61
95 5 0.03
96 27 0.18
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCCGATATGTAGAGCTAGTGTAAGACCATGTC
TGGGACATGACATCGGCTATGAGAAGA
Found at i:103433673 original size:46 final size:46
Alignment explanation
Indices: 103433481--103433847 Score: 254
Period size: 46 Copynumber: 7.8 Consensus size: 46
103433471 TTATTTGTGT
* *
103433481 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGA-GA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-C-TATGA-GATGA
** *
103433527 GCTAGTGTAAGACCATGTCTGGGACATGATATCGGC-ATTGAGACAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-TGAG--ATGA
* * *
103433575 GCTAGTGTATGA-CATGTCTGGGACAT-GCATCAGCCT-CGAGATGTAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTATGAGATG--A
*
103433621 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGA
* * * * *
103433667 GTTAGTGTAAGGCCATGTCTGGGACATGGCATCAACACAGATATGTGA-GA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT-----CGGCTATGAGATGA
* * * * *
103433717 GCCAGTGTAAGACCATGTCTGGAACATGGCGTCGACCTCAATTACGAT-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCT--ATGA-GATGA
* *
103433766 G-TCAGTGTAAGACCAT-TCTGGGACATGCCATCGACTTAATG-GATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-T-ATGAGATGA
* *
103433812 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
103433848 ATTCTACCCT
Statistics
Matches: 254, Mismatches: 39, Indels: 55
0.73 0.11 0.16
Matches are distributed among these distances:
44 2 0.01
45 6 0.02
46 78 0.31
47 69 0.27
48 46 0.18
49 17 0.07
50 28 0.11
51 8 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGA
Found at i:103438456 original size:46 final size:46
Alignment explanation
Indices: 103438388--103438524 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
103438378 TATATATACA
* * * *
103438388 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
103438434 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
103438480 TAACTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
103438525 ATACATGTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:103438558 original size:47 final size:47
Alignment explanation
Indices: 103438498--103438736 Score: 388
Period size: 47 Copynumber: 5.1 Consensus size: 47
103438488 ACACATTTCG
* * * *
103438498 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
103438545 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
103438592 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
**
103438639 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
103438686 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
103438733 CATT
1 CATT
103438737 AAAATCCTAA
Statistics
Matches: 181, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:103444235 original size:49 final size:49
Alignment explanation
Indices: 103444163--103444256 Score: 127
Period size: 49 Copynumber: 1.9 Consensus size: 49
103444153 TGCTATGCAA
* * *
103444163 TGCTAAACTTGGTTTTCCACTGTCTACATTATTATCACTATTTATACAT
1 TGCTAAACTTGATTTTCCACTGTCTACACTATTATAACTATTTATACAT
* *
103444212 TGCTAAACTT-ATTCTTTCACTGTCTACACTCTTATAACTATTTAT
1 TGCTAAACTTGATT-TTCCACTGTCTACACTATTATAACTATTTAT
103444257 CCCTTATTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 2 0.05
49 37 0.95
ACGTcount: A:0.27, C:0.21, G:0.06, T:0.46
Consensus pattern (49 bp):
TGCTAAACTTGATTTTCCACTGTCTACACTATTATAACTATTTATACAT
Found at i:103447523 original size:23 final size:22
Alignment explanation
Indices: 103447493--103447536 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
103447483 AAAATAGTGG
*
103447493 AAATTGAG-TTAGAAGTTTAATA
1 AAATTGAGATTA-AAGCTTAATA
103447515 AAATATGAGATTAAAGCTTAAT
1 AAAT-TGAGATTAAAGCTTAAT
103447537 GAGTCTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 12 0.63
24 3 0.16
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (22 bp):
AAATTGAGATTAAAGCTTAATA
Found at i:103448477 original size:21 final size:21
Alignment explanation
Indices: 103448453--103448515 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
103448443 GTGTGTATGT
103448453 AAATATGACAAAAAGGCTTGG
1 AAATATGACAAAAAGGCTTGG
* ** * *
103448474 AAAT-TAAC-CTAA-G-ATGT
1 AAATATGACAAAAAGGCTTGG
103448491 AAATATGACAAAAAGGCTTGG
1 AAATATGACAAAAAGGCTTGG
103448512 AAAT
1 AAAT
103448516 TAGCCTAAGT
Statistics
Matches: 28, Mismatches: 10, Indels: 8
0.61 0.22 0.17
Matches are distributed among these distances:
17 6 0.21
18 4 0.14
19 4 0.14
20 4 0.14
21 10 0.36
ACGTcount: A:0.49, C:0.10, G:0.19, T:0.22
Consensus pattern (21 bp):
AAATATGACAAAAAGGCTTGG
Found at i:103448492 original size:38 final size:38
Alignment explanation
Indices: 103448449--103448524 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
103448439 ATGTGTGTGT
103448449 ATGTAAATATGACAAAAAGGCTTGGAAATTAACCTAAG
1 ATGTAAATATGACAAAAAGGCTTGGAAATTAACCTAAG
*
103448487 ATGTAAATATGACAAAAAGGCTTGGAAATTAGCCTAAG
1 ATGTAAATATGACAAAAAGGCTTGGAAATTAACCTAAG
103448525 TCTTGACCAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.24
Consensus pattern (38 bp):
ATGTAAATATGACAAAAAGGCTTGGAAATTAACCTAAG
Found at i:103457761 original size:13 final size:13
Alignment explanation
Indices: 103457740--103457779 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
103457730 GGAGTAATCG
103457740 CACACGGGCGTGT
1 CACACGGGCGTGT
*
103457753 CACATGGGCGT-T
1 CACACGGGCGTGT
103457765 GCACACGGGCGTGT
1 -CACACGGGCGTGT
103457779 C
1 C
103457780 CCTTCTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 1 0.04
13 21 0.91
14 1 0.04
ACGTcount: A:0.15, C:0.30, G:0.38, T:0.17
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:103459146 original size:86 final size:87
Alignment explanation
Indices: 103458989--103459154 Score: 228
Period size: 86 Copynumber: 1.9 Consensus size: 87
103458979 AACTCGTACA
* * * * * *
103458989 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCAAATATCGATGTCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAAACATGGTCTTACACGAAATCAAATATCGATGTCAATGTCCCAGACAGGGT
103459054 CTTACACGAAAATCATAATCCG
66 CTTACACGAAAATCATAATCCG
* *
103459076 ATGCCAACGTCCCAAACGTGGTCTTACACGAAATCAAATA-CGATG-CAAATGTCCCAGACATGG
1 ATGCCAACGTCCCAAACATGGTCTTACACGAAATCAAATATCGATGTC-AATGTCCCAGACAGGG
*
103459139 TCTTACACGTAAATCA
65 TCTTACACGAAAATCA
103459155 CAAATCTATC
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 1 0.01
86 34 0.49
87 34 0.49
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (87 bp):
ATGCCAACGTCCCAAACATGGTCTTACACGAAATCAAATATCGATGTCAATGTCCCAGACAGGGT
CTTACACGAAAATCATAATCCG
Found at i:103459153 original size:43 final size:43
Alignment explanation
Indices: 103458989--103459154 Score: 201
Period size: 43 Copynumber: 3.9 Consensus size: 43
103458979 AACTCGTACA
* *
103458989 ATGCCAATGTCCTAGACATGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATA-CG
* * * * *
103459032 ATGTCACTGTCCCAGACAGGGTCTTACACGAAAATCATAATCCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AATACG
* * *
103459076 ATGCCAACGTCCCAAACGTGGTCTTACACG-AAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATACG
*
103459118 ATGCAAATGTCCCAGACATGGTCTTACACGTAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA
103459155 CAAATCTATC
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 31 0.30
43 37 0.36
44 31 0.30
45 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATACG
Found at i:103463325 original size:18 final size:18
Alignment explanation
Indices: 103463302--103463342 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
103463292 AGTCAGTCAA
103463302 CAGTAATAATCAGTTAAT
1 CAGTAATAATCAGTTAAT
* * *
103463320 CAGTAATATTCATTTATT
1 CAGTAATAATCAGTTAAT
103463338 CAGTA
1 CAGTA
103463343 TCACTCGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (18 bp):
CAGTAATAATCAGTTAAT
Found at i:103463908 original size:3 final size:3
Alignment explanation
Indices: 103463900--103463959 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
103463890 ATTCAATACC
103463900 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
103463948 ATA ATA ATA ATA
1 ATA ATA ATA ATA
103463960 CTTACCATTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:103464644 original size:9 final size:9
Alignment explanation
Indices: 103464632--103464665 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
103464622 TGTTTCTCTT
103464632 TTTCATTTC
1 TTTCATTTC
103464641 TTTCATTTC
1 TTTCATTTC
103464650 TTTCATTTC
1 TTTCATTTC
103464659 TTT-ATTT
1 TTTCATTT
103464666 TTATTATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.16
9 21 0.84
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTCATTTC
Found at i:103468266 original size:68 final size:68
Alignment explanation
Indices: 103468119--103468274 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
103468109 AGCCGATTTG
* * * * *
103468119 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
103468184 TATC
65 TATA
* *
103468188 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
103468250 ATATAGTA
62 ATATA-TA
103468258 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
103468275 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:103475755 original size:68 final size:67
Alignment explanation
Indices: 103475608--103475763 Score: 147
Period size: 68 Copynumber: 2.3 Consensus size: 67
103475598 AGCCGATTTG
* * * * *
103475608 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACAT-G-ATCACACATGCGACCTAGCTACATA
*
103475673 TATC
64 TATA
* *
103475677 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATCCCAT-ATCACACATGTGACCTAGCTACTA
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACATGATCACACATGCGACCTAGCTAC-A
103475740 TATAGTA
62 TATA-TA
103475747 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
103475764 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 32 0.44
69 7 0.10
70 5 0.07
71 28 0.38
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (67 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACATGATCACACATGCGACCTAGCTACATATA
TA
Found at i:103478259 original size:20 final size:16
Alignment explanation
Indices: 103478219--103478260 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
103478209 AAAGTTGATA
103478219 ATAATTAATATATATT
1 ATAATTAATATATATT
103478235 ATAATTAATATA-ATT
1 ATAATTAATATATATT
103478250 ATATATTAATA
1 ATA-ATTAATA
103478261 ATTATCAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATTAATATATATT
Found at i:103478799 original size:12 final size:12
Alignment explanation
Indices: 103478782--103478806 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103478772 ACCCAAAACC
103478782 CTTAGCCCAAAA
1 CTTAGCCCAAAA
103478794 CTTAGCCCAAAA
1 CTTAGCCCAAAA
103478806 C
1 C
103478807 ACTAACTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTTAGCCCAAAA
Found at i:103478883 original size:9 final size:9
Alignment explanation
Indices: 103478869--103478927 Score: 64
Period size: 9 Copynumber: 6.1 Consensus size: 9
103478859 TACTCCACTA
103478869 AACCACTCC
1 AACCACTCC
103478878 AACCACTCC
1 AACCACTCC
*
103478887 AATCACTCCAC
1 AACCACT-C-C
*
103478898 TAAACTACTCC
1 --AACCACTCC
103478909 AACCACTCC
1 AACCACTCC
103478918 AACCACTCC
1 AACCACTCC
103478927 A
1 A
103478928 CTAAACCACC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
9 33 0.79
10 1 0.02
11 2 0.05
12 1 0.02
13 5 0.12
ACGTcount: A:0.36, C:0.49, G:0.00, T:0.15
Consensus pattern (9 bp):
AACCACTCC
Found at i:103478885 original size:22 final size:22
Alignment explanation
Indices: 103478860--103478962 Score: 92
Period size: 22 Copynumber: 4.9 Consensus size: 22
103478850 AAATATCTTT
103478860 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
* ** * *
103478882 ACTCCAATCACTCCACT-AAACT
1 ACTCCACT-AAACCACTCCAACC
103478904 ACT-C-C--AACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
*
103478922 ACTCCACTAAACCACCCCAACC
1 ACTCCACTAAACCACTCCAACC
103478944 AC-CCTACTAAACCACTCCA
1 ACTCC-ACTAAACCACTCCA
103478963 CTAAACCACC
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
17 5 0.08
18 6 0.10
19 1 0.02
20 1 0.02
21 3 0.05
22 40 0.65
23 6 0.10
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.15
Consensus pattern (22 bp):
ACTCCACTAAACCACTCCAACC
Found at i:103478895 original size:31 final size:31
Alignment explanation
Indices: 103478860--103478984 Score: 169
Period size: 31 Copynumber: 3.9 Consensus size: 31
103478850 AAATATCTTT
* *
103478860 ACTCCACTAAACCACTCCAACCACTCCAATC
1 ACTCCACTAAACCACCCCAACCACTCCAACC
* *
103478891 ACTCCACTAAACTACTCCAACCACTCCAACC
1 ACTCCACTAAACCACCCCAACCACTCCAACC
*
103478922 ACTCCACTAAACCACCCCAACCACCCTACTAAACC
1 ACTCCACTAAACCACCCCAACCA--CT-C-CAACC
103478957 ACTCCACTAAACCACCCCAACCACTCCA
1 ACTCCACTAAACCACCCCAACCACTCCA
103478985 CTTGCCTACA
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
31 51 0.61
32 1 0.01
33 4 0.05
34 1 0.01
35 27 0.32
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (31 bp):
ACTCCACTAAACCACCCCAACCACTCCAACC
Found at i:103478936 original size:13 final size:12
Alignment explanation
Indices: 103478918--103478973 Score: 64
Period size: 13 Copynumber: 4.7 Consensus size: 12
103478908 CAACCACTCC
103478918 AACCACTCCACTA
1 AACCAC-CCACTA
103478931 AACCACCC-C--
1 AACCACCCACTA
103478940 AACCACCCTACTA
1 AACCACCC-ACTA
103478953 AACCACTCCACTA
1 AACCAC-CCACTA
103478966 AACCACCC
1 AACCACCC
103478974 CAACCACTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
9 8 0.21
11 2 0.05
12 4 0.11
13 22 0.58
14 2 0.05
ACGTcount: A:0.38, C:0.52, G:0.00, T:0.11
Consensus pattern (12 bp):
AACCACCCACTA
Found at i:103479409 original size:3 final size:3
Alignment explanation
Indices: 103479374--103479473 Score: 68
Period size: 3 Copynumber: 33.3 Consensus size: 3
103479364 AGAGCTTTTT
* * *
103479374 TTA TTT TTA TT- TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
*
103479417 TTA TTA TTA TTA TTA TT- TCTCA TGTA TATA TTA TTA TT- TATA CTA
1 TTA TTA TTA TTA TTA TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA
103479462 TTA TTA -TA TTA T
1 TTA TTA TTA TTA T
103479474 ATATGCCCTC
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
2 9 0.12
3 60 0.78
4 6 0.08
5 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:103479597 original size:12 final size:13
Alignment explanation
Indices: 103479548--103479602 Score: 55
Period size: 12 Copynumber: 4.5 Consensus size: 13
103479538 TTCTGACTAC
*
103479548 TATTATTATATA-
1 TATTATTATGTAT
103479560 TA-TATATATGTAT
1 TATTAT-TATGTAT
*
103479573 TATTGTT-TGTAT
1 TATTATTATGTAT
103479585 TATTATTAT-TAT
1 TATTATTATGTAT
103479597 TATTAT
1 TATTAT
103479603 CACCTCTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 3 0.08
12 27 0.75
13 4 0.11
14 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (13 bp):
TATTATTATGTAT
Found at i:103479713 original size:19 final size:18
Alignment explanation
Indices: 103479677--103479750 Score: 53
Period size: 19 Copynumber: 3.9 Consensus size: 18
103479667 TTATTTTTGC
103479677 TATTACTGT-TATTATTATA
1 TATTA-TGTATATT-TTATA
*
103479696 TATTAGTGTATATTTTATG
1 TATTA-TGTATATTTTATA
*
103479715 TATATATATATATTTATATA
1 TAT-TATGTATATTT-TATA
* *
103479735 TAGTAT-TATTTTTTAT
1 TATTATGTATATTTTAT
103479751 TACTTTAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
17 3 0.07
18 6 0.13
19 26 0.57
20 11 0.24
ACGTcount: A:0.32, C:0.01, G:0.07, T:0.59
Consensus pattern (18 bp):
TATTATGTATATTTTATA
Found at i:103479860 original size:41 final size:40
Alignment explanation
Indices: 103479786--103479864 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 40
103479776 ATTTGCTTTT
*
103479786 TGTATTTCTATATTTATTATTATTAGTATTATATAGTAGTG
1 TGTATTTCTATATATATTATTATTA-TATTATATAGTAGTG
103479827 TGTATTTCTATTATATATATATATATT-TA-TATATAGTA
1 TGTATTTCTA-TATATAT-TAT-TATTATATTATATAGTA
103479865 TTATTATTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
41 19 0.56
42 8 0.24
43 3 0.09
44 4 0.12
ACGTcount: A:0.33, C:0.03, G:0.09, T:0.56
Consensus pattern (40 bp):
TGTATTTCTATATATATTATTATTATATTATATAGTAGTG
Found at i:103490855 original size:42 final size:44
Alignment explanation
Indices: 103490808--103490920 Score: 124
Period size: 44 Copynumber: 2.6 Consensus size: 44
103490798 AAGGTTTAAC
* * *
103490808 CCCCTAAGCAGTAGGGTAACAGGTTGA-GTTTAC-AG-ATCTAAA
1 CCCCTAAGCAGTAGGGTAACAGGTTGATGATAACAAGCCTC-AAA
* * ** *
103490850 CCCCTAAGCAGTAGGGAAACAGATCAATGATAACAAGCCTCAAC
1 CCCCTAAGCAGTAGGGTAACAGGTTGATGATAACAAGCCTCAAA
103490894 CCCCTAAGCAGTAGGGTAACAGGTTGA
1 CCCCTAAGCAGTAGGGTAACAGGTTGA
103490921 AAATCAAATA
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
42 23 0.41
43 4 0.07
44 27 0.48
45 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (44 bp):
CCCCTAAGCAGTAGGGTAACAGGTTGATGATAACAAGCCTCAAA
Found at i:103491015 original size:68 final size:68
Alignment explanation
Indices: 103490931--103491201 Score: 418
Period size: 68 Copynumber: 4.0 Consensus size: 68
103490921 AAATCAAATA
* *
103490931 TCTTCTCCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAGTAGATCTCCTTGAAGTTTCAGTGG
1 TCTTCTCCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
103490996 ATC
66 ATC
* * *
103490999 TCTTTTCCCTGAAATGGCGTTGGAGCGGTTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
1 TCTTCTCCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
103491064 ATC
66 ATC
* * *
103491067 TCTTCTCCCTGATATGGCGTTGGAGCAGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGTGA
1 TCTTCTCCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
*
103491132 ATA
66 ATC
* * *
103491135 TCTTCCCCCTGAAATGGCAG-TGGAGCAGCTAAAAGCCACATCAGATTTCCTTGAAGTTTCAGTG
1 TCTTCTCCCTGAAATGGC-GTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTG
103491199 GAT
65 GAT
103491202 TAATCGAAGC
Statistics
Matches: 187, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
68 186 0.99
69 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (68 bp):
TCTTCTCCCTGAAATGGCGTTGGAGCAGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGTGG
ATC
Found at i:103491657 original size:9 final size:9
Alignment explanation
Indices: 103491643--103491701 Score: 73
Period size: 9 Copynumber: 6.1 Consensus size: 9
103491633 TACTCCACTA
103491643 AACCACTCC
1 AACCACTCC
103491652 AACCACTCC
1 AACCACTCC
103491661 AACCACTCCAC
1 AACCACT-C-C
*
103491672 TAAACTACTCC
1 --AACCACTCC
103491683 AACCACTCC
1 AACCACTCC
103491692 AACCACTCC
1 AACCACTCC
103491701 A
1 A
103491702 CTAAACCACC
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 34 0.77
10 1 0.02
11 2 0.05
12 1 0.02
13 6 0.14
ACGTcount: A:0.36, C:0.51, G:0.00, T:0.14
Consensus pattern (9 bp):
AACCACTCC
Found at i:103491659 original size:22 final size:22
Alignment explanation
Indices: 103491634--103491736 Score: 92
Period size: 22 Copynumber: 4.9 Consensus size: 22
103491624 AAATATCTTT
103491634 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
*
103491656 ACT-C-C--AACCACTCC-ACT
1 ACTCCACTAAACCACTCCAACC
** * *
103491673 AAACTACTCCAACCACTCCAACC
1 ACTCCACT-AAACCACTCCAACC
*
103491696 ACTCCACTAAACCACCCCAACC
1 ACTCCACTAAACCACTCCAACC
103491718 AC-CCTACTAAACCACTCCA
1 ACTCC-ACTAAACCACTCCA
103491737 CTAAACCACC
Statistics
Matches: 63, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
17 3 0.05
18 9 0.14
19 1 0.02
20 1 0.02
21 3 0.05
22 39 0.62
23 7 0.11
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (22 bp):
ACTCCACTAAACCACTCCAACC
Found at i:103491669 original size:31 final size:31
Alignment explanation
Indices: 103491634--103491758 Score: 178
Period size: 31 Copynumber: 3.9 Consensus size: 31
103491624 AAATATCTTT
*
103491634 ACTCCACTAAACCACTCCAACCACTCCAACC
1 ACTCCACTAAACCACCCCAACCACTCCAACC
* *
103491665 ACTCCACTAAACTACTCCAACCACTCCAACC
1 ACTCCACTAAACCACCCCAACCACTCCAACC
*
103491696 ACTCCACTAAACCACCCCAACCACCCTACTAAACC
1 ACTCCACTAAACCACCCCAACCA--CT-C-CAACC
103491731 ACTCCACTAAACCACCCCAACCACTCCA
1 ACTCCACTAAACCACCCCAACCACTCCA
103491759 CTTGCCTACA
Statistics
Matches: 85, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
31 52 0.61
32 1 0.01
33 4 0.05
34 1 0.01
35 27 0.32
ACGTcount: A:0.36, C:0.51, G:0.00, T:0.13
Consensus pattern (31 bp):
ACTCCACTAAACCACCCCAACCACTCCAACC
Found at i:103491710 original size:13 final size:12
Alignment explanation
Indices: 103491692--103491747 Score: 64
Period size: 13 Copynumber: 4.7 Consensus size: 12
103491682 CAACCACTCC
103491692 AACCACTCCACTA
1 AACCAC-CCACTA
103491705 AACCACCC-C--
1 AACCACCCACTA
103491714 AACCACCCTACTA
1 AACCACCC-ACTA
103491727 AACCACTCCACTA
1 AACCAC-CCACTA
103491740 AACCACCC
1 AACCACCC
103491748 CAACCACTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
9 8 0.21
11 2 0.05
12 4 0.11
13 22 0.58
14 2 0.05
ACGTcount: A:0.38, C:0.52, G:0.00, T:0.11
Consensus pattern (12 bp):
AACCACCCACTA
Found at i:103492185 original size:3 final size:3
Alignment explanation
Indices: 103492150--103492243 Score: 56
Period size: 3 Copynumber: 31.3 Consensus size: 3
103492140 GAGCTTTGTT
* * *
103492150 TTA TTT TTA TT- TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
*
103492193 TTA TTA TTA TT- TCTCA TGTA TATA TTA TTA TT- TATA CTA TTA TTA
1 TTA TTA TTA TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA
103492238 -TA TTA T
1 TTA TTA T
103492244 ATATGCCCTC
Statistics
Matches: 71, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
2 9 0.13
3 54 0.76
4 6 0.08
5 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:103492218 original size:21 final size:18
Alignment explanation
Indices: 103492150--103492247 Score: 82
Period size: 18 Copynumber: 5.6 Consensus size: 18
103492140 GAGCTTTGTT
*
103492150 TTATTTTTATT-TTATT-
1 TTATTTATATTATTATTA
*
103492166 TTA-TTAT-TT-TTACTA
1 TTATTTATATTATTATTA
103492181 TTATTTATATTATTATTA
1 TTATTTATATTATTATTA
*
103492199 TTATTTCTCATGTATATATTA
1 TTATTTAT-AT-TAT-TATTA
*
103492220 TTATTTATACTATTATTA
1 TTATTTATATTATTATTA
103492238 -TATTATATAT
1 TTATT-TATAT
103492248 GCCCTCTCCA
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
14 6 0.09
15 6 0.09
16 7 0.10
17 6 0.09
18 21 0.31
19 5 0.07
20 4 0.06
21 12 0.18
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (18 bp):
TTATTTATATTATTATTA
Found at i:103492367 original size:12 final size:13
Alignment explanation
Indices: 103492318--103492372 Score: 55
Period size: 12 Copynumber: 4.5 Consensus size: 13
103492308 TTCTGACTAC
*
103492318 TATTATTATATA-
1 TATTATTATGTAT
103492330 TA-TATATATGTAT
1 TATTAT-TATGTAT
*
103492343 TATTGTT-TGTAT
1 TATTATTATGTAT
103492355 TATTATTAT-TAT
1 TATTATTATGTAT
103492367 TATTAT
1 TATTAT
103492373 CACCTCTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 3 0.08
12 27 0.75
13 4 0.11
14 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (13 bp):
TATTATTATGTAT
Found at i:103500825 original size:18 final size:18
Alignment explanation
Indices: 103500802--103500836 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
103500792 TAAGTGCACT
103500802 TTAATTATTTTATAAAAA
1 TTAATTATTTTATAAAAA
103500820 TTAATTATTTTATAAAA
1 TTAATTATTTTATAAAA
103500837 GTGTGTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAATTATTTTATAAAAA
Found at i:103503015 original size:20 final size:20
Alignment explanation
Indices: 103502982--103503021 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
103502972 TCCTCTTTCA
*
103502982 TTTCTATTTCATTTAATTATT
1 TTTCTATTTAATTT-ATTATT
103503003 TTTC-ATTTAATTTATTATT
1 TTTCTATTTAATTTATTATT
103503022 ATTATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTCTATTTAATTTATTATT
Found at i:103515182 original size:40 final size:39
Alignment explanation
Indices: 103515118--103515305 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
103515108 GCTACTCGTT
* * * ** *
103515118 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
103515158 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
103515198 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
103515237 CAATTGCCTTCGGGCTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
103515276 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
103515306 CTCGAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:103515233 original size:39 final size:39
Alignment explanation
Indices: 103515154--103515306 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
103515144 TATGGTAACC
* *
103515154 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
103515194 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
103515233 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
103515272 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
103515307 TCGAACATTT
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:103515284 original size:78 final size:79
Alignment explanation
Indices: 103515123--103515305 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
103515113 TCGTTCAAAC
* * **
103515123 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
103515188 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
103515203 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
103515267 CAATTTGCACAATT
66 CAACTCGCACAATT
103515281 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
103515306 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:103528510 original size:25 final size:25
Alignment explanation
Indices: 103528476--103528526 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
103528466 TCTACAGTGG
103528476 AACTTAATGAGAAGTGCTCGACTAT
1 AACTTAATGAGAAGTGCTCGACTAT
103528501 AACTTAATGAGAAGTGCTCGACTAT
1 AACTTAATGAGAAGTGCTCGACTAT
103528526 A
1 A
103528527 CTCTAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (25 bp):
AACTTAATGAGAAGTGCTCGACTAT
Found at i:103534934 original size:46 final size:46
Alignment explanation
Indices: 103534881--103535056 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
103534871 TATTTGGGCA
103534881 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * *
103534927 TCCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
103534974 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
103535020 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
103535057 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 66 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:103535037 original size:93 final size:93
Alignment explanation
Indices: 103534877--103535048 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
103534867 GGGATATTTG
* *
103534877 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTAAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAG
103534942 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
103534970 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAG
103535035 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
103535049 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTAAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:103550697 original size:40 final size:39
Alignment explanation
Indices: 103550547--103550699 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
103550537 AAATGTTCGA
* *
103550547 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
103550586 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
103550625 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
103550664 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
103550700 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:103550715 original size:40 final size:39
Alignment explanation
Indices: 103550548--103550730 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
103550538 AATGTTCGAG
* * *
103550548 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
103550587 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
103550626 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
103550665 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
103550705 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
103550731 GTTTGAACGA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:103550766 original size:79 final size:79
Alignment explanation
Indices: 103550554--103550768 Score: 177
Period size: 78 Copynumber: 2.7 Consensus size: 79
103550544 CGAGTGATAT
** * * * * * *
103550554 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCT-AA-GCCCGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCC-GGATAAACTCCCGAAGGCAATTG
** *
103550617 TGCGAGTTATGATAT
65 TGCGAGTTACCATAA
** * * * * *
103550632 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
*
103550697 GCGGGTTACCATAA
66 GCGAGTTACCATAA
* **
103550711 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGGATAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGATAAACTCCCGAAGG
103550769 TATGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.35
79 40 0.35
80 30 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
GCGAGTTACCATAA
Found at i:103554063 original size:100 final size:100
Alignment explanation
Indices: 103553890--103554176 Score: 493
Period size: 100 Copynumber: 2.9 Consensus size: 100
103553880 TATTGTGAGG
*
103553890 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
103553955 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
* *
103553990 TCACGTGTGTAGTACTAAGTGCAGGGTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
* *
103554055 AAGTGCAGGCTATTATGCATACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
* *
103554090 CCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
* *
103554155 AAGTGCAAGTTACTATGCGTAC
66 AAGTGCAGGCTACTATGCGTAC
103554177 TAGATAGCCT
Statistics
Matches: 174, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 174 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
Found at i:103554169 original size:49 final size:49
Alignment explanation
Indices: 103553895--103554161 Score: 329
Period size: 49 Copynumber: 5.4 Consensus size: 49
103553885 TGAGGTCACG
*
103553895 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
103553944 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
* *
103553995 TGTGTAGTACTAAGTGCAGGGTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * ** * * *
103554044 TGTGTAGTACTAAGTGCAGGCTATTATGCATACCCGATAACTTCGAC-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTGGTCGCA
*
103554093 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
103554144 TGTGTAGTACTAAGTGCA
1 TGTGTAGTACTAAGTGCA
103554162 AGTTACTATG
Statistics
Matches: 181, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
49 93 0.51
50 12 0.07
51 76 0.42
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:103555996 original size:48 final size:48
Alignment explanation
Indices: 103555927--103556210 Score: 236
Period size: 48 Copynumber: 5.9 Consensus size: 48
103555917 GGGTGAATTA
* * * * *
103555927 CCGATGCCAT-ACTCCAAACATGGTCTTACACTTGCTCACATGTCAAGG
1 CCGATGCCATGTC-CCAGACATGGTCTTACACTAGCTCACATATCAACG
* * * * * *
103555975 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTTAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAACG
* * * **
103556023 CCAATTCCATGTCCCAAACATGGTCTTACACTAGCGGACATATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAACG
* * *
103556071 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACATCG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAACG
* * * * * * *
103556119 CCAATGCCATGTTCCAAACATGGTCTTATACTGGCT--CTTAT-AATGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA--CG
* * *
103556166 ACCGATGCCATGTTCCAAACATGGTCTTACATTAGCTCACA-ATCA
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
103556211 CCCAAATTTC
Statistics
Matches: 187, Mismatches: 42, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
45 1 0.01
46 3 0.02
47 1 0.01
48 177 0.95
49 3 0.02
50 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAACG
Found at i:103556104 original size:96 final size:96
Alignment explanation
Indices: 103555940--103556203 Score: 295
Period size: 96 Copynumber: 2.8 Consensus size: 96
103555930 ATGCCATACT
* * * * *
103555940 CCAAACATGGTCTTACACTTGCTCACATGTCAAGGCTGATGCCATGTCCCAGACATGGTCTTACA
1 CCAAACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACA
* * *
103556005 CTAGCTCTCGTCTTA-AT-GCCAATTCCATGTC
66 CTAGCTCTC--ATAACATCGCCAATGCCATGTC
*
103556036 CCAAACATGGTCTTACACTAGCGGACATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACA
1 CCAAACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACA
*
103556101 CTAGCTCTCATAACATCGCCAATGCCATGTT
66 CTAGCTCTCATAACATCGCCAATGCCATGTC
* * * * * *
103556132 CCAAACATGGTCTTATACT-G-GCTCTTAT-AATGTGACCGATGCCATGTTCCAAACATGGTCTT
1 CCAAACATGGTCTTACACTAGCGCACATATCAA--CG-CCGATGCCATGTCCCAGACATGGTCTT
*
103556194 ACATTAGCTC
63 ACACTAGCTC
103556204 ACAATCACCC
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
93 2 0.01
94 7 0.05
95 4 0.03
96 132 0.91
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (96 bp):
CCAAACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACA
CTAGCTCTCATAACATCGCCAATGCCATGTC
Found at i:103564936 original size:40 final size:40
Alignment explanation
Indices: 103564881--103565108 Score: 350
Period size: 40 Copynumber: 5.7 Consensus size: 40
103564871 TGAATGATAC
* * * * *
103564881 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
103564921 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
103564961 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
103565001 CCGAGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
103565041 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
103565081 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
103565109 TTGTGGTTAT
Statistics
Matches: 174, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 172 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:103573092 original size:39 final size:40
Alignment explanation
Indices: 103573001--103573181 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
103572991 GATACCCGGC
* * * *
103573001 TAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGT
1 TAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGT
*
103573041 TAAGACCCGAAGGCATTTGTACGAGTTGCTATATCC-GGT
1 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
* *
103573080 TAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGC
1 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
*
103573120 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
1 TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
*
103573160 TAAGACCCGAAGGCAATTGTGC
1 TAAGACCCGAAGGCATTTGTGC
103573182 TTGTGGTTAT
Statistics
Matches: 127, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.29
40 88 0.69
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGT
Found at i:103573210 original size:79 final size:79
Alignment explanation
Indices: 103572992--103573201 Score: 305
Period size: 79 Copynumber: 2.7 Consensus size: 79
103572982 CAATTGAATG
* * * * *
103572992 ATACCCGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCAT
1 ATACCCGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCAT
103573057 TTGTACGAGTTGCT
66 TTGTACGAGTTGCT
* * *
103573071 ATATCCGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCAT
1 ATACCCGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCAT
*
103573136 TTGTGCGAGTTGCT
66 TTGTACGAGTTGCT
* *
103573150 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCC-GGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
103573202 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
79 81 0.70
80 35 0.30
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
ATACCCGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTACGAGTTGCT
Found at i:103574614 original size:25 final size:25
Alignment explanation
Indices: 103574586--103574633 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
103574576 ATATAGTTCA
103574586 GAAATAAGAGAAACCGCCAAGTGGT
1 GAAATAAGAGAAACCGCCAAGTGGT
103574611 GAAATAAGAGAAACCGCCAAGTG
1 GAAATAAGAGAAACCGCCAAGTG
103574634 TTTGTGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.46, C:0.17, G:0.27, T:0.10
Consensus pattern (25 bp):
GAAATAAGAGAAACCGCCAAGTGGT
Found at i:103581170 original size:107 final size:107
Alignment explanation
Indices: 103580984--103581197 Score: 367
Period size: 107 Copynumber: 2.0 Consensus size: 107
103580974 ATAGATTGGC
* *
103580984 AAGTAAAGAATGTTATTGTTTTCTTGATGGATACTTGAGATATCATTAGATTCCTAAACATACAA
1 AAGTAAAGAATGTAATTGTTTTCTTGATGGATACTTGAGATATCATTAGATTCCCAAACATACAA
103581049 ATGATCAAGAAAAACTACATTCACATGCCCTTTCAGCACATA
66 ATGATCAAGAAAAACTACATTCACATGCCCTTTCAGCACATA
103581091 AAGTAAAGAATGTAATTGTTTTCTTGATGGATACTTGAGATATCATTAGATTCCCAAACAT-CAA
1 AAGTAAAGAATGTAATTGTTTTCTTGATGGATACTTGAGATATCATTAGATTCCCAAACATAC-A
* * *
103581155 AATGATCAAGGAAAACTACATTCACATGCCCTTTTAGTACATA
65 AATGATCAAGAAAAACTACATTCACATGCCCTTTCAGCACATA
103581198 CGATTTTAAA
Statistics
Matches: 101, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
106 1 0.01
107 100 0.99
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (107 bp):
AAGTAAAGAATGTAATTGTTTTCTTGATGGATACTTGAGATATCATTAGATTCCCAAACATACAA
ATGATCAAGAAAAACTACATTCACATGCCCTTTCAGCACATA
Found at i:103584479 original size:26 final size:26
Alignment explanation
Indices: 103584443--103584499 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
103584433 GCAAAATGGT
*
103584443 AGGAGTACCAATGGATTGACTGGATA
1 AGGAGTACCAAAGGATTGACTGGATA
103584469 AGGAGTACCAAAGGATTGACTGGATA
1 AGGAGTACCAAAGGATTGACTGGATA
103584495 AGGAG
1 AGGAG
103584500 ATGAAACCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.37, C:0.11, G:0.33, T:0.19
Consensus pattern (26 bp):
AGGAGTACCAAAGGATTGACTGGATA
Found at i:103586635 original size:24 final size:24
Alignment explanation
Indices: 103586608--103586669 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
103586598 CATAACCAGT
* * *
103586608 AAGTTCACAAAGAACCTTATCGGG
1 AAGTTCACAAAGAAACATATCAGG
* *
103586632 AAGTTGACAAAAAAAACATATCAGG
1 AAGTTCAC-AAAGAAACATATCAGG
103586657 AAGTTCACAAAGA
1 AAGTTCACAAAGA
103586670 TCCGGATAGC
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
24 11 0.37
25 19 0.63
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (24 bp):
AAGTTCACAAAGAAACATATCAGG
Found at i:103602306 original size:18 final size:20
Alignment explanation
Indices: 103602276--103602312 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
103602266 TGAGGGTTTT
103602276 ATTCTTAAGTTTTT-CTTTC
1 ATTCTTAAGTTTTTACTTTC
103602295 ATTCTT-AGTTTTTACTTT
1 ATTCTTAAGTTTTTACTTT
103602313 GGTTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.16, C:0.14, G:0.05, T:0.65
Consensus pattern (20 bp):
ATTCTTAAGTTTTTACTTTC
Found at i:103621828 original size:40 final size:40
Alignment explanation
Indices: 103621769--103621976 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
103621759 CAATTGAATG
* * * *
103621769 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
103621809 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
103621849 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
103621889 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
103621929 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
103621969 ATATCCGG
1 ATATCCGG
103621977 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:103621907 original size:80 final size:80
Alignment explanation
Indices: 103621771--103621976 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
103621761 ATTGAATGAT
* * ** * * *
103621771 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
103621835 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
103621851 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
103621916 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
103621931 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
103621977 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:103632832 original size:40 final size:40
Alignment explanation
Indices: 103632773--103632980 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
103632763 CAATTGAATG
* * * *
103632773 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
103632813 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
103632853 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
103632893 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
103632933 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
103632973 ATATCCGG
1 ATATCCGG
103632981 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:103632911 original size:80 final size:80
Alignment explanation
Indices: 103632775--103632980 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
103632765 ATTGAATGAT
* * ** * * *
103632775 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
103632839 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
103632855 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
103632920 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
103632935 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
103632981 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:103634364 original size:18 final size:18
Alignment explanation
Indices: 103634341--103634381 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
103634331 TCGGGGTGTT
* *
103634341 ACACTAACCCTTCCTAAA
1 ACACTAAACCATCCTAAA
*
103634359 ACACTAAACCATCTTAAA
1 ACACTAAACCATCCTAAA
103634377 ACACT
1 ACACT
103634382 CTCTCTATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.22
Consensus pattern (18 bp):
ACACTAAACCATCCTAAA
Found at i:103642555 original size:46 final size:46
Alignment explanation
Indices: 103642505--103642778 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
103642495 GCTCTCTGAT
** * * *
103642505 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
103642551 ATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
103642597 ATGAAATGAATAAGACCGTGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
103642643 AGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
103642689 ATGAAATGAATAAGACCATGGTTGAAAGATAACATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
103642735 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
103642779 TCAAAGATAA
Statistics
Matches: 205, Mismatches: 22, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 204 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:103643080 original size:16 final size:17
Alignment explanation
Indices: 103643059--103643091 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
103643049 ATGATGGTGC
103643059 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
103643075 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
103643092 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:103646589 original size:19 final size:22
Alignment explanation
Indices: 103646543--103646589 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 22
103646533 ATTGAGTGGT
103646543 TAATTAGACTTTAATTAAGTAA
1 TAATTAGACTTTAATTAAGTAA
*
103646565 -ATTTAG-C-TTAATTAAG-AA
1 TAATTAGACTTTAATTAAGTAA
103646583 TAATTAG
1 TAATTAG
103646590 TGGAAAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
18 2 0.09
19 14 0.64
20 1 0.05
21 5 0.23
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (22 bp):
TAATTAGACTTTAATTAAGTAA
Found at i:103646948 original size:13 final size:13
Alignment explanation
Indices: 103646930--103646972 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
103646920 TTTAATAATA
103646930 AAATAAAGAAATG
1 AAATAAAGAAATG
103646943 AAATAAAGAAAT-
1 AAATAAAGAAATG
* *
103646955 AAATGAAATAAAAG
1 AAAT-AAAGAAATG
103646969 AAAT
1 AAAT
103646973 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:103646960 original size:17 final size:18
Alignment explanation
Indices: 103646926--103646972 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
103646916 ATAGTTTAAT
* *
103646926 AATAAAATAAAGAAATGA
1 AATAAAAGAAATAAATGA
103646944 AAT-AAAGAAATAAATGA
1 AATAAAAGAAATAAATGA
103646961 AATAAAAGAAAT
1 AATAAAAGAAAT
103646973 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (18 bp):
AATAAAAGAAATAAATGA
Found at i:103646964 original size:9 final size:9
Alignment explanation
Indices: 103646938--103646972 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
103646928 TAAAATAAAG
103646938 AAATGAAAT
1 AAATGAAAT
103646947 AAA-GAAAT
1 AAATGAAAT
103646955 AAATGAAAT
1 AAATGAAAT
*
103646964 AAAAGAAAT
1 AAATGAAAT
103646973 GAAAAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (9 bp):
AAATGAAAT
Found at i:103647026 original size:13 final size:13
Alignment explanation
Indices: 103646999--103647037 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
103646989 GCAAACGAAA
103646999 CAGAGAAGAACAGGG
1 CAGA-AAGAA-AGGG
103647014 CAGAAAGAAAGGG
1 CAGAAAGAAAGGG
*
103647027 AAGAAAGAAAG
1 CAGAAAGAAAG
103647038 AAAGGGAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 14 0.61
14 5 0.22
15 4 0.17
ACGTcount: A:0.56, C:0.08, G:0.36, T:0.00
Consensus pattern (13 bp):
CAGAAAGAAAGGG
Found at i:103647050 original size:17 final size:17
Alignment explanation
Indices: 103647015--103647048 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
103647005 AGAACAGGGC
103647015 AGAAAGAAAGGGAAGAA
1 AGAAAGAAAGGGAAGAA
103647032 AGAAAGAAAGGG-AGAA
1 AGAAAGAAAGGGAAGAA
103647048 A
1 A
103647049 AGGGAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (17 bp):
AGAAAGAAAGGGAAGAA
Found at i:103648359 original size:5 final size:5
Alignment explanation
Indices: 103648344--103648400 Score: 78
Period size: 5 Copynumber: 11.2 Consensus size: 5
103648334 AGTGGAAAAG
* *
103648344 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT
*
103648395 GGAAT T
1 TGAAT T
103648401 ATGATTAATT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
5 45 0.92
6 4 0.08
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.37
Consensus pattern (5 bp):
TGAAT
Found at i:103648872 original size:45 final size:45
Alignment explanation
Indices: 103648808--103649041 Score: 360
Period size: 45 Copynumber: 5.2 Consensus size: 45
103648798 CTGTTAACGC
* *
103648808 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
103648853 TACTGCTACTGTTACCGATTCGGCACTTTGTCTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
103648898 TACTATTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
103648943 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCAAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
103648988 TACTGTTACCGTTACCGATTCAGCACTTTGTGTGTTGAATACTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
103649033 TACTGTTAC
1 TACTGTTAC
103649042 TGCTACTGTT
Statistics
Matches: 176, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 176 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:103649291 original size:18 final size:18
Alignment explanation
Indices: 103649241--103649423 Score: 90
Period size: 18 Copynumber: 10.2 Consensus size: 18
103649231 TATTACTGAT
*
103649241 TAATTGACTGTTACCGGA
1 TAATTGACTGTTACTGGA
*
103649259 TAATTGAATGTTACTGGA
1 TAATTGACTGTTACTGGA
*
103649277 T-ATTAGACTGTTACTGAA
1 TAATT-GACTGTTACTGGA
* * * *
103649295 TAACTGAATATTACTGAA
1 TAATTGACTGTTACTGGA
* *
103649313 TAATTGA-TCATTACTGAA
1 TAATTGACT-GTTACTGGA
* * * *
103649331 TAACTGATTGTCACTGAA
1 TAATTGACTGTTACTGGA
* *
103649349 TGAA-TGACTGCTACTGAA
1 T-AATTGACTGTTACTGGA
* *
103649367 TAACTT-AATAGTTACTGAA
1 TAA-TTGACT-GTTACTGGA
* **
103649386 T-ATCTGA-TTTTACTAAA
1 TAAT-TGACTGTTACTGGA
103649403 TAATTGACTGTTACTGGA
1 TAATTGACTGTTACTGGA
103649421 TAA
1 TAA
103649424 CCGATCAATT
Statistics
Matches: 132, Mismatches: 21, Indels: 24
0.75 0.12 0.14
Matches are distributed among these distances:
17 18 0.14
18 98 0.74
19 16 0.12
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TAATTGACTGTTACTGGA
Found at i:103649327 original size:36 final size:36
Alignment explanation
Indices: 103649221--103649503 Score: 148
Period size: 36 Copynumber: 7.6 Consensus size: 36
103649211 AAAGGTATAA
* * *
103649221 AATAACTGATTATTACTGATTAATTGA-CTGTTACCG
1 AATAACTGAATATTACTGAATAATTGATC-GTTACTG
* * * *
103649257 GATAATTGAATGTTACTGGAT-ATTAGA-CTGTTACTG
1 AATAACTGAATATTACTGAATAATT-GATC-GTTACTG
*
103649293 AATAACTGAATATTACTGAATAATTGATCATTACTG
1 AATAACTGAATATTACTGAATAATTGATCGTTACTG
* * * *
103649329 AATAACTGATTGTCACTGAATGAA-TGA-CTGCTACTG
1 AATAACTGAATATTACTGAAT-AATTGATC-GTTACTG
* * *
103649365 AATAACTTAATAGTTACTGAAT-ATCTGAT-TTTACTA
1 AATAACTGAATA-TTACTGAATAAT-TGATCGTTACTG
* * * *
103649401 AATAATTGACTGTTACTGGATAACCGATCAATTGATCGATACTG
1 AATAACTGAATATTACT-G---A---AT-AATTGATCGTTACTG
** * * *
103649445 AATAACTGGTTATTATTGAATAATTGATTGTTACCG
1 AATAACTGAATATTACTGAATAATTGATCGTTACTG
* *
103649481 AATAACTGACTGTTACTGAATAA
1 AATAACTGAATATTACTGAATAA
103649504 ATAATTATTC
Statistics
Matches: 185, Mismatches: 43, Indels: 38
0.70 0.16 0.14
Matches are distributed among these distances:
35 10 0.05
36 129 0.70
37 19 0.10
39 1 0.01
40 1 0.01
42 2 0.01
43 5 0.03
44 18 0.10
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (36 bp):
AATAACTGAATATTACTGAATAATTGATCGTTACTG
Found at i:103649358 original size:72 final size:72
Alignment explanation
Indices: 103649221--103649387 Score: 185
Period size: 72 Copynumber: 2.3 Consensus size: 72
103649211 AAAGGTATAA
* * * * * * * *
103649221 AATAACTGATTATTACTGATTAATTGACTGTTACCGGATAATTGAATGTTACTGGATATTAGACT
1 AATAACTGAATATTACTGAATAATTGACTATTACCGAATAACTGAATGTCACTGAATAATAGACT
*
103649286 GTTACTG
66 GCTACTG
* *
103649293 AATAACTGAATATTACTGAATAATTGA-TCATTACTGAATAACTGATTGTCACTGAATGAAT-GA
1 AATAACTGAATATTACTGAATAATTGACT-ATTACCGAATAACTGAATGTCACTGAAT-AATAGA
103649356 CTGCTACTG
64 CTGCTACTG
*
103649365 AATAACTTAATAGTTACTGAATA
1 AATAACTGAATA-TTACTGAATA
103649388 TCTGATTTTA
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
71 1 0.01
72 67 0.84
73 12 0.15
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.36
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTGACTATTACCGAATAACTGAATGTCACTGAATAATAGACT
GCTACTG
Found at i:103649412 original size:54 final size:55
Alignment explanation
Indices: 103649306--103649424 Score: 138
Period size: 54 Copynumber: 2.2 Consensus size: 55
103649296 AACTGAATAT
* *
103649306 TACTGAATAA-TTGATCATTACTGAATAACTGATTGTCACTGAATGAATGACTGC
1 TACTGAATAACTTAATCATTACTGAATAACTGATTGTCACTAAATGAATGACTGC
* * *
103649360 TACTGAATAACTTAAT-AGTTACTGAATATCTGATT-TTACTAAAT-AATTGACTGT
1 TACTGAATAACTTAATCA-TTACTGAATAACTGATTGTCACTAAATGAA-TGACTGC
*
103649414 TACTGGATAAC
1 TACTGAATAAC
103649425 CGATCAATTG
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
53 2 0.04
54 34 0.61
55 20 0.36
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (55 bp):
TACTGAATAACTTAATCATTACTGAATAACTGATTGTCACTAAATGAATGACTGC
Found at i:103649483 original size:18 final size:18
Alignment explanation
Indices: 103649462--103649503 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
103649452 GGTTATTATT
* *
103649462 GAATAATTGATTGTTACC
1 GAATAACTGACTGTTACC
*
103649480 GAATAACTGACTGTTACT
1 GAATAACTGACTGTTACC
103649498 GAATAA
1 GAATAA
103649504 ATAATTATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (18 bp):
GAATAACTGACTGTTACC
Found at i:103651078 original size:23 final size:23
Alignment explanation
Indices: 103651052--103651101 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
103651042 TATAAAACCT
103651052 AAAAAACAAA-AATAAG-CTTAAA
1 AAAAAACAAACAAT-AGTCTTAAA
*
103651074 GAAAAAATAAACAATAGTCTTAAA
1 -AAAAAACAAACAATAGTCTTAAA
103651098 AAAA
1 AAAA
103651102 TAAGAGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.70, C:0.08, G:0.06, T:0.16
Consensus pattern (23 bp):
AAAAAACAAACAATAGTCTTAAA
Found at i:103657432 original size:24 final size:24
Alignment explanation
Indices: 103657399--103657465 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
103657389 GTTCATTTGA
*
103657399 TTCAATATGCAATTCATTTCTGGT
1 TTCAACATGCAATTCATTTCTGGT
* *
103657423 TTCAACATGCAATTTATTTTTGGT
1 TTCAACATGCAATTCATTTCTGGT
103657447 TTCAACATGCAATTCATTT
1 TTCAACATGCAATTCATTT
103657466 ATTCACGAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.46
Consensus pattern (24 bp):
TTCAACATGCAATTCATTTCTGGT
Found at i:103660832 original size:5 final size:5
Alignment explanation
Indices: 103660822--103660858 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
103660812 AATTTGTGTG
*
103660822 TTATT TTATT TTTTT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
103660859 TTCACAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTATT
Found at i:103665281 original size:5 final size:5
Alignment explanation
Indices: 103665271--103665308 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
103665261 AATTTGTGTG
*
103665271 TTATT TTATT TTTTCT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TT
103665309 TTCACATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:103665413 original size:21 final size:22
Alignment explanation
Indices: 103665371--103665413 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
103665361 AATTTTGAAT
*
103665371 TTTTTAGTATTTAAATAATATA
1 TTTTTAGTATTTAAACAATATA
* *
103665393 TTTTTA-TATTTTAACATTATA
1 TTTTTAGTATTTAAACAATATA
103665414 AAATACACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTTAGTATTTAAACAATATA
Found at i:103666036 original size:5 final size:6
Alignment explanation
Indices: 103666018--103666047 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
103666008 TATGGTTACT
103666018 AATAAA AATAAA AATAAAA AATAAA AATAA
1 AATAAA AATAAA AAT-AAA AATAAA AATAA
103666048 TCATATGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:103666039 original size:13 final size:13
Alignment explanation
Indices: 103666021--103666047 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
103666011 GGTTACTAAT
103666021 AAAAATAAAAATA
1 AAAAATAAAAATA
103666034 AAAAATAAAAATA
1 AAAAATAAAAATA
103666047 A
1 A
103666048 TCATATGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:103668034 original size:141 final size:141
Alignment explanation
Indices: 103667770--103668027 Score: 347
Period size: 141 Copynumber: 1.8 Consensus size: 141
103667760 TATTAAATTA
** * * *
103667770 TTGCTATTACTGGCTTAAACAATGAGGAAGAGAAGTTGCACGATAATGTAACAGTTAACTAGATT
1 TTGCTATTACTAACTTAAACAATGAGGAAGAGAAGTTGCACCATAATCTAACAATTAACTAGATT
* * * *
103667835 GAACCTTTTATTTTTGCAAATAACTATTACTAACAACACTAAAACCACAATTACACAAAAATCAA
66 GAACCTTATATTTTTGCAAACAACTAATACCAACAACACTAAAACCACAATTACACAAAAATCAA
103667900 ACCTTATATTG
131 ACCTTATATTG
* * *
103667911 TTGCTATTACTAACTTAAGCAATGAGGAAGATAAGTTGTACCATAATCTAACAATT-ACATAGAT
1 TTGCTATTACTAACTTAAACAATGAGGAAGAGAAGTTGCACCATAATCTAACAATTAAC-TAGAT
*** * *
103667975 TGAACCTTATATTTTTGTGGACAACTAATACCAACAATATTAAAACCACAATT
65 TGAACCTTATATTTTTGCAAACAACTAATACCAACAACACTAAAACCACAATT
103668028 TTACAAATTG
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
140 2 0.02
141 97 0.98
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.31
Consensus pattern (141 bp):
TTGCTATTACTAACTTAAACAATGAGGAAGAGAAGTTGCACCATAATCTAACAATTAACTAGATT
GAACCTTATATTTTTGCAAACAACTAATACCAACAACACTAAAACCACAATTACACAAAAATCAA
ACCTTATATTG
Found at i:103669809 original size:17 final size:17
Alignment explanation
Indices: 103669787--103669819 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
103669777 TGAAAGATCC
*
103669787 TCTTTTTTTTTCTTTTT
1 TCTTTTTTTGTCTTTTT
103669804 TCTTTTTTTGTCTTTT
1 TCTTTTTTTGTCTTTT
103669820 AATCTTATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (17 bp):
TCTTTTTTTGTCTTTTT
Found at i:103676445 original size:2 final size:2
Alignment explanation
Indices: 103676438--103676465 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
103676428 TCAAAATCAT
103676438 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
103676466 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:103682002 original size:10 final size:12
Alignment explanation
Indices: 103681978--103682017 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
103681968 TTTATAAAAA
103681978 TTTTAATATATT
1 TTTTAATATATT
103681990 TTTTAAT-TATT
1 TTTTAATATATT
103682001 TTTT-ATGA-ATT
1 TTTTAAT-ATATT
103682012 TTTTAA
1 TTTTAA
103682018 GAGTACCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.08
11 15 0.60
12 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (12 bp):
TTTTAATATATT
Found at i:103684299 original size:14 final size:14
Alignment explanation
Indices: 103684280--103684330 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
103684270 TCCACTTCCA
103684280 CTTTCAATTTCTTT
1 CTTTCAATTTCTTT
* **
103684294 CTTTCAAGATAATATT
1 CTTTCAA-TTTCT-TT
103684310 CTTTCAATTTCTTT
1 CTTTCAATTTCTTT
103684324 CTTTCAA
1 CTTTCAA
103684331 GATAATATTC
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
14 16 0.55
15 4 0.14
16 9 0.31
ACGTcount: A:0.24, C:0.20, G:0.02, T:0.55
Consensus pattern (14 bp):
CTTTCAATTTCTTT
Found at i:103684313 original size:16 final size:16
Alignment explanation
Indices: 103684292--103684341 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
103684282 TTCAATTTCT
103684292 TTCTTTCAAGATAATA
1 TTCTTTCAAGATAATA
* **
103684308 TTCTTTCAA-TTTCT-
1 TTCTTTCAAGATAATA
103684322 TTCTTTCAAGATAATA
1 TTCTTTCAAGATAATA
103684338 TTCT
1 TTCT
103684342 AACTCTCTAG
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
16 13 0.50
ACGTcount: A:0.28, C:0.16, G:0.04, T:0.52
Consensus pattern (16 bp):
TTCTTTCAAGATAATA
Found at i:103684314 original size:30 final size:30
Alignment explanation
Indices: 103684280--103684341 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
103684270 TCCACTTCCA
103684280 CTTTCAATTTCTTTCTTTCAAGATAATATT
1 CTTTCAATTTCTTTCTTTCAAGATAATATT
103684310 CTTTCAATTTCTTTCTTTCAAGATAATATT
1 CTTTCAATTTCTTTCTTTCAAGATAATATT
103684340 CT
1 CT
103684342 AACTCTCTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.18, G:0.03, T:0.53
Consensus pattern (30 bp):
CTTTCAATTTCTTTCTTTCAAGATAATATT
Found at i:103685676 original size:21 final size:20
Alignment explanation
Indices: 103685650--103685698 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
103685640 TCTTTATTTC
* *
103685650 TTTTCTTTTTTCCGTGTTTTT
1 TTTTCTTTTTCCCCT-TTTTT
*
103685671 TTTTCTCTTTCCCCTTTTTT
1 TTTTCTTTTTCCCCTTTTTT
103685691 TTCTTCTT
1 TT-TTCTT
103685699 CTCTTCTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.00, C:0.22, G:0.04, T:0.73
Consensus pattern (20 bp):
TTTTCTTTTTCCCCTTTTTT
Found at i:103693007 original size:17 final size:17
Alignment explanation
Indices: 103692987--103693020 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
103692977 AGGTTTAGGT
103692987 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
103693004 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
103693021 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:103693589 original size:16 final size:18
Alignment explanation
Indices: 103693550--103693591 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
103693540 AAAATTAATA
103693550 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
103693567 ATTTTTATATATTAT-TT
1 ATATTTATATATTATGTT
103693584 A-ATTTATA
1 ATATTTATA
103693592 ACATATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 8 0.36
18 8 0.36
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:103694620 original size:14 final size:13
Alignment explanation
Indices: 103694569--103694620 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 13
103694559 TTTTATAAGC
103694569 ACAAAAAAAAA-A
1 ACAAAAAAAAAGA
103694581 A-AAAAAAAATAGA
1 ACAAAAAAAA-AGA
*
103694594 ACAAATAATAAAGA
1 ACAAA-AAAAAAGA
103694608 ACAAAAAACAAAG
1 ACAAAAAA-AAAG
103694621 GGTAAATGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
11 8 0.24
12 2 0.06
13 4 0.12
14 15 0.45
15 4 0.12
ACGTcount: A:0.81, C:0.08, G:0.06, T:0.06
Consensus pattern (13 bp):
ACAAAAAAAAAGA
Found at i:103703150 original size:8 final size:8
Alignment explanation
Indices: 103703139--103703166 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
103703129 AAAAATTAAA
103703139 AAAATTAT
1 AAAATTAT
103703147 AAAATTAT
1 AAAATTAT
103703155 AAAATTAT
1 AAAATTAT
103703163 AAAA
1 AAAA
103703167 AAAAACTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (8 bp):
AAAATTAT
Done.