Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 335 of 425
Found at i:103981118 original size:20 final size:20
Alignment explanation
Indices: 103981074--103981155 Score: 92
Period size: 20 Copynumber: 4.0 Consensus size: 20
103981064 TTATAAAAAA
* *
103981074 TTACAAATTTTTTATAAATTCT
1 TTAC-AATTTTTTAT-ATTTTT
103981096 TTACAATTTTTTATATTTTT
1 TTACAATTTTTTATATTTTT
* *
103981116 TTATAATTTTTTCTATTTTT
1 TTACAATTTTTTATATTTTT
* *
103981136 TAATAATTTTTTATATTTTT
1 TTACAATTTTTTATATTTTT
103981156 CTATATATAT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 40 0.74
21 10 0.19
22 4 0.07
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (20 bp):
TTACAATTTTTTATATTTTT
Found at i:103981155 original size:10 final size:10
Alignment explanation
Indices: 103981102--103981172 Score: 79
Period size: 10 Copynumber: 6.9 Consensus size: 10
103981092 TTCTTTACAA
103981102 TTTTTTATAT
1 TTTTTTATAT
*
103981112 TTTTTTATAA
1 TTTTTTATAT
*
103981122 TTTTTTCTAT
1 TTTTTTATAT
* *
103981132 TTTTTAATAA
1 TTTTTTATAT
103981142 TTTTTTATAT
1 TTTTTTATAT
103981152 TTTTCTATATAT
1 TTTT-T-TATAT
*
103981164 ATTTTTATA
1 TTTTTTATA
103981173 AAATTTTAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
10 40 0.80
11 2 0.04
12 8 0.16
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTTTATAT
Found at i:103981185 original size:33 final size:34
Alignment explanation
Indices: 103981129--103981193 Score: 98
Period size: 33 Copynumber: 1.9 Consensus size: 34
103981119 TAATTTTTTC
*
103981129 TATTTTTTAATAATTTTTTATATTTTTCTATATA
1 TATTTTTTAATAATTTTTAATATTTTTCTATATA
103981163 TATTTTTATAA-AA-TTTTAATATTTTTCTATA
1 TATTTTT-TAATAATTTTTAATATTTTTCTATA
103981194 ACTTTTATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 17 0.59
34 9 0.31
35 3 0.10
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (34 bp):
TATTTTTTAATAATTTTTAATATTTTTCTATATA
Found at i:103981186 original size:19 final size:20
Alignment explanation
Indices: 103981162--103981211 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
103981152 TTTTCTATAT
103981162 ATATTTTTATA-AAATTTTA
1 ATATTTTTATATAAATTTTA
* *
103981181 ATATTTTTCTATAACTTTTA
1 ATATTTTTATATAAATTTTA
*
103981201 TTGATTTTTAT
1 AT-ATTTTTAT
103981212 TTTTTTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 10 0.40
20 8 0.32
21 7 0.28
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (20 bp):
ATATTTTTATATAAATTTTA
Found at i:103984484 original size:32 final size:32
Alignment explanation
Indices: 103984448--103984542 Score: 145
Period size: 32 Copynumber: 3.0 Consensus size: 32
103984438 CAATTGAATC
*
103984448 TCCGTACATACATGTACCATATTGTACCAATT
1 TCCGTACATACCTGTACCATATTGTACCAATT
103984480 TCCGTACATACCTGTACCATATTGTACCAATT
1 TCCGTACATACCTGTACCATATTGTACCAATT
* * * *
103984512 TCCGTAGATACCTGTATCATCTCGTACCAAT
1 TCCGTACATACCTGTACCATATTGTACCAAT
103984543 CACATACTCA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.34
Consensus pattern (32 bp):
TCCGTACATACCTGTACCATATTGTACCAATT
Found at i:103984656 original size:28 final size:28
Alignment explanation
Indices: 103984621--103984719 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
103984611 CGATACCTTT
* *
103984621 CACACTAAGTGTCGTTCTGGATGTTTCG
1 CACACTAAGTGCCATTCTGGATGTTTCG
* * * * **
103984649 CATACTAAGTGCCATCCTCGTTACTTCG
1 CACACTAAGTGCCATTCTGGATGTTTCG
*
103984677 CACACTAAGTGCCATTCTGGATGTATCG
1 CACACTAAGTGCCATTCTGGATGTTTCG
103984705 CACACTAAGTGCCAT
1 CACACTAAGTGCCAT
103984720 CCCCGATACT
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (28 bp):
CACACTAAGTGCCATTCTGGATGTTTCG
Found at i:103984695 original size:56 final size:56
Alignment explanation
Indices: 103984621--103984746 Score: 180
Period size: 56 Copynumber: 2.2 Consensus size: 56
103984611 CGATACCTTT
* * * * * *
103984621 CACACTAAGTGTCGTTCTGGATGTTTCGCATACTAAGTGCCATCCTCGTTACTTCG
1 CACACTAAGTGCCATTCTGGATGTATCGCACACTAAGTGCCATCCCCGATACTTCG
103984677 CACACTAAGTGCCATTCTGGATGTATCGCACACTAAGTGCCATCCCCGATACTTCG
1 CACACTAAGTGCCATTCTGGATGTATCGCACACTAAGTGCCATCCCCGATACTTCG
**
103984733 CACGTTAAGTGCCA
1 CACACTAAGTGCCA
103984747 CATATAATTA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (56 bp):
CACACTAAGTGCCATTCTGGATGTATCGCACACTAAGTGCCATCCCCGATACTTCG
Found at i:103984733 original size:28 final size:28
Alignment explanation
Indices: 103984645--103984746 Score: 116
Period size: 28 Copynumber: 3.6 Consensus size: 28
103984635 TTCTGGATGT
* *
103984645 TTCGCATACTAAGTGCCATCCTCGTTAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* * *
103984673 TTCGCACACTAAGTGCCATTCTGGAT-G
1 TTCGCACACTAAGTGCCATCCTCGATAC
*
103984700 TATCGCACACTAAGTGCCATCCCCGATAC
1 T-TCGCACACTAAGTGCCATCCTCGATAC
**
103984729 TTCGCACGTTAAGTGCCA
1 TTCGCACACTAAGTGCCA
103984747 CATATAATTA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
27 1 0.02
28 59 0.97
29 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:103991044 original size:39 final size:39
Alignment explanation
Indices: 103990920--103991024 Score: 183
Period size: 39 Copynumber: 2.7 Consensus size: 39
103990910 GAGATTGGAA
*
103990920 ATATCCGGACATGAGATCCGCGGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
103990959 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
* *
103990998 ATATCCGGACTTGAGGTCCGCAGGCTA
1 ATATCCGGACATGAGATCCGCAGGCTA
103991025 CGTGCTGGGA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
Found at i:103991263 original size:2 final size:2
Alignment explanation
Indices: 103991256--103991283 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
103991246 AAAGCACGAA
103991256 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103991284 GTGTGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103996764 original size:3 final size:3
Alignment explanation
Indices: 103996758--103996789 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
103996748 GCTCTGTTGT
103996758 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
103996790 TCATTTTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:104012817 original size:2 final size:2
Alignment explanation
Indices: 104012810--104012839 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
104012800 GCCCTAGCAC
104012810 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104012840 TGTAATTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:104015195 original size:17 final size:17
Alignment explanation
Indices: 104015173--104015206 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
104015163 CAACACCATT
104015173 TATACTTGAATAAGCAA
1 TATACTTGAATAAGCAA
104015190 TATACTTGAATAAGCAA
1 TATACTTGAATAAGCAA
104015207 CAAACATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (17 bp):
TATACTTGAATAAGCAA
Found at i:104026989 original size:27 final size:27
Alignment explanation
Indices: 104026916--104027005 Score: 69
Period size: 27 Copynumber: 3.3 Consensus size: 27
104026906 GTCTTCCCGA
* *
104026916 GTTTACCGTCTCAGCAA-ACTACC-CTGT
1 GTTTACTGTCCCAG-AAGACTACCTC-GT
* *
104026943 GTTTATTGTCCTAGAAGACTACCTCGT
1 GTTTACTGTCCCAGAAGACTACCTCGT
** *
104026970 GTTTACTGTCCCAGCGGACTA-GTCCGT
1 GTTTACTGTCCCAGAAGACTACCT-CGT
104026997 GTTTACTGT
1 GTTTACTGT
104027006 TCTGACGGAT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
26 3 0.06
27 47 0.92
28 1 0.02
ACGTcount: A:0.19, C:0.27, G:0.20, T:0.34
Consensus pattern (27 bp):
GTTTACTGTCCCAGAAGACTACCTCGT
Found at i:104027879 original size:15 final size:15
Alignment explanation
Indices: 104027859--104027890 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
104027849 TACTACCAGA
104027859 CTTCAATTCACGCGT
1 CTTCAATTCACGCGT
104027874 CTTCAATTCACGCGT
1 CTTCAATTCACGCGT
104027889 CT
1 CT
104027891 GCTGTGACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.34, G:0.12, T:0.34
Consensus pattern (15 bp):
CTTCAATTCACGCGT
Found at i:104029044 original size:13 final size:13
Alignment explanation
Indices: 104029013--104029065 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
104029003 CTTAATCCTA
104029013 AAATAAT-AAAAT
1 AAATAATAAAAAT
104029025 AAA-AATAAAAAT
1 AAATAATAAAAAT
*
104029037 AAATAATAAAACT
1 AAATAATAAAAAT
*
104029050 AAATAAAATAAAAT
1 AAATAATA-AAAAT
104029064 AA
1 AA
104029066 TATCTTCTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 3 0.09
12 11 0.31
13 15 0.43
14 6 0.17
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATAATAAAAAT
Found at i:104029057 original size:23 final size:23
Alignment explanation
Indices: 104029011--104029067 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 23
104029001 AGCTTAATCC
104029011 TAAAATAATAAAATAAAAATAAAA
1 TAAAATAATAAAAT-AAAATAAAA
104029035 -ATAAATAATAAAACT-AAATAAAA
1 TA-AAATAATAAAA-TAAAATAAAA
104029058 TAAAATAATA
1 TAAAATAATA
104029068 TCTTCTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
23 17 0.57
24 12 0.40
25 1 0.03
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (23 bp):
TAAAATAATAAAATAAAATAAAA
Found at i:104029065 original size:10 final size:11
Alignment explanation
Indices: 104029017--104029062 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
104029007 ATCCTAAAAT
104029017 AATAAAATAAA
1 AATAAAATAAA
104029028 AATAAAAATAAA
1 AAT-AAAATAAA
104029040 TAATAAAACT--A
1 -AATAAAA-TAAA
104029051 AATAAAATAAA
1 AATAAAATAAA
104029062 A
1 A
104029063 TAATATCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
9 1 0.03
10 7 0.23
11 6 0.20
12 12 0.40
13 4 0.13
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:104029067 original size:13 final size:13
Alignment explanation
Indices: 104029011--104029065 Score: 53
Period size: 15 Copynumber: 4.2 Consensus size: 13
104029001 AGCTTAATCC
104029011 TAAAATAATAAAA
1 TAAAATAATAAAA
104029024 T-AAA-AATAAAA
1 TAAAATAATAAAA
104029035 -ATAAATAATAAAA
1 TA-AAATAATAAAA
*
104029048 CTAAATAAAATAAAA
1 -TAAA-ATAATAAAA
104029063 TAA
1 TAA
104029066 TATCTTCTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
11 7 0.20
12 6 0.17
13 8 0.23
14 5 0.14
15 9 0.26
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (13 bp):
TAAAATAATAAAA
Found at i:104035870 original size:18 final size:18
Alignment explanation
Indices: 104035849--104035887 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
104035839 TTTGACTTGC
*
104035849 GTCGTGGGCACGACTAGT
1 GTCGTGGCCACGACTAGT
* *
104035867 GTCGTGGCCGCGACTTGT
1 GTCGTGGCCACGACTAGT
104035885 GTC
1 GTC
104035888 AAGTACGGGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.10, C:0.26, G:0.38, T:0.26
Consensus pattern (18 bp):
GTCGTGGCCACGACTAGT
Found at i:104038421 original size:5 final size:5
Alignment explanation
Indices: 104038411--104038458 Score: 53
Period size: 5 Copynumber: 9.0 Consensus size: 5
104038401 ATCCTAAAAT
104038411 AATAA AATAA AATAAA AATAAA TAATAA AACT-A AATAA AATAA AATAA
1 AATAA AATAA AAT-AA AAT-AA -AATAA AA-TAA AATAA AATAA AATAA
104038459 TATCTTCTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
4 1 0.03
5 24 0.62
6 11 0.28
7 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:104038437 original size:23 final size:23
Alignment explanation
Indices: 104038405--104038460 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 23
104038395 AGCTTAATCC
104038405 TAAAATAATAAAA-TAAAATAAAA
1 TAAAATAATAAAACT-AAATAAAA
104038428 -ATAAATAATAAAACTAAATAAAA
1 TA-AAATAATAAAACTAAATAAAA
104038451 TAAAATAATA
1 TAAAATAATA
104038461 TCTTCTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 1 0.03
23 27 0.90
24 2 0.07
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (23 bp):
TAAAATAATAAAACTAAATAAAA
Found at i:104046762 original size:2 final size:2
Alignment explanation
Indices: 104046757--104046794 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
104046747 GTTGACTTGT
104046757 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
104046795 ATGATATTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:104047602 original size:28 final size:30
Alignment explanation
Indices: 104047570--104047638 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 30
104047560 TCTTACTATG
104047570 GTTTTTTTTTTATCACTCAATTAT-GATTT
1 GTTTTTTTTTTATCACTCAATTATGGATTT
** **
104047599 -TTTTAGTTTGGTCACTCAATTATGGATTT
1 GTTTTTTTTTTATCACTCAATTATGGATTT
104047628 GTTTTTTTTTT
1 GTTTTTTTTTT
104047639 TTTACCACTC
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 19 0.61
29 5 0.16
30 7 0.23
ACGTcount: A:0.17, C:0.09, G:0.12, T:0.62
Consensus pattern (30 bp):
GTTTTTTTTTTATCACTCAATTATGGATTT
Found at i:104047694 original size:61 final size:61
Alignment explanation
Indices: 104047571--104047696 Score: 148
Period size: 61 Copynumber: 2.1 Consensus size: 61
104047561 CTTACTATGG
* * ** * *
104047571 TTTTTTTTTTATCACTCAATTATGATTTTTTTAGTTTGGTCACTCAATTATGGATTTGTTT
1 TTTTTTTTTTACCACTCAACTATGATTTTTTTAAATTGATCACTCAATAATGGATTTGTTT
* * *
104047632 TTTTTTTTTTACCACTCAACTAT-ATTTTTTTAAATTGATCATTCAACTAATTGAGTT-TTT
1 TTTTTTTTTTACCACTCAACTATGATTTTTTTAAATTGATCACTCAA-TAATGGATTTGTTT
104047692 TTTTT
1 TTTTT
104047697 GTTCATTTCT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
60 27 0.49
61 28 0.51
ACGTcount: A:0.22, C:0.11, G:0.08, T:0.59
Consensus pattern (61 bp):
TTTTTTTTTTACCACTCAACTATGATTTTTTTAAATTGATCACTCAATAATGGATTTGTTT
Found at i:104048156 original size:29 final size:29
Alignment explanation
Indices: 104048123--104048180 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
104048113 TGTAAAAAAA
*
104048123 ATTAAATATTAAAATGGTATGTTAATAGG
1 ATTAAATATTAAAATGGTATGTCAATAGG
104048152 ATTAAATATTAAAATGGTATGTCAATAGG
1 ATTAAATATTAAAATGGTATGTCAATAGG
104048181 GGTGGTGCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.45, C:0.02, G:0.17, T:0.36
Consensus pattern (29 bp):
ATTAAATATTAAAATGGTATGTCAATAGG
Found at i:104048850 original size:89 final size:94
Alignment explanation
Indices: 104048689--104048950 Score: 299
Period size: 89 Copynumber: 2.8 Consensus size: 94
104048679 TTCTTTTTAA
* *
104048689 AATTATTTTAAAGTCATTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGTGTTTA-TTGT
1 AATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTT-T
*
104048753 AATTTTTA-TGA-ATTTA-AAAT-T-TTTT
65 AATGTTTATTGATATTTATAAATGTATTTT
*
104048778 AATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTTA
1 AATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTTA
* * *
104048843 GTGTTTATTGTGATTTTTTATGAATGTAATTTT
66 ATGTTTA-T-TGA-TATTTATAAATGT-ATTTT
** *
104048876 TTTTAATTTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT-ATT-TGTTTAGTT
1 AATT-A-TTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTT
104048939 TAAT-TTGTATTG
64 TAATGTT-TATTG
104048951 TGATTTGTTA
Statistics
Matches: 148, Mismatches: 12, Indels: 19
0.83 0.07 0.11
Matches are distributed among these distances:
89 64 0.43
90 2 0.01
92 3 0.02
94 4 0.03
95 3 0.02
96 3 0.02
97 3 0.02
98 20 0.14
99 3 0.02
100 43 0.29
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (94 bp):
AATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTTA
ATGTTTATTGATATTTATAAATGTATTTT
Found at i:104049247 original size:17 final size:17
Alignment explanation
Indices: 104049206--104049247 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
104049196 AATTTATGAG
*
104049206 ATATTTTTTATTGTAAT
1 ATATTTATTATTGTAAT
*
104049223 -TATATTATTATTGTACT
1 ATAT-TTATTATTGTAAT
104049240 ATATTTAT
1 ATATTTAT
104049248 CGTATTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
16 3 0.14
17 15 0.71
18 3 0.14
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (17 bp):
ATATTTATTATTGTAAT
Found at i:104049330 original size:13 final size:13
Alignment explanation
Indices: 104049312--104049336 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104049302 GACCCTCTAG
104049312 AAATTAATTATCA
1 AAATTAATTATCA
104049325 AAATTAATTATC
1 AAATTAATTATC
104049337 TTAGTTTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATTAATTATCA
Found at i:104051223 original size:43 final size:42
Alignment explanation
Indices: 104051125--104051288 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 42
104051115 TACTGAGATA
* * *
104051125 TGATTACATGTAAGACCATGTCTGGGAAATTGGCATTGTATTATG
1 TGATTACATATAAGACCATGTCTGGGACA-TGGCATCG--TTATG
104051170 T--TTACATATAAGACCATGTCTGGGACATCGGCATCGTTATG
1 TGATTACATATAAGACCATGTCTGGGACAT-GGCATCGTTATG
* * * * *
104051211 TGATTTCGTATAAGACCCTGTCTGGTACAATGGCATCGATATG
1 TGATTACATATAAGACCATGTCTGGGAC-ATGGCATCGTTATG
* * * * *
104051254 TGATAACATGTAAGACCATATCCGGGATATGGCAT
1 TGATTACATATAAGACCATGTCTGGGACATGGCAT
104051289 TGTACGAGTT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 6 0.06
42 8 0.08
43 81 0.83
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
TGATTACATATAAGACCATGTCTGGGACATGGCATCGTTATG
Found at i:104054024 original size:93 final size:91
Alignment explanation
Indices: 104053867--104054035 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 91
104053857 GCCCATAAGT
* *
104053867 GAACTCAGACTCAACTCAAAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAACG
1 GAACTCAGACTCAACTCAAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAACG
104053932 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
* * * *
104053958 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAA--AGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
104054023 CGAGTTCGGATGC
64 CGAGTTCGGATGC
104054036 TCAACCATCC
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
91 18 0.26
93 52 0.74
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (91 bp):
GAACTCAGACTCAACTCAAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:104054025 original size:46 final size:46
Alignment explanation
Indices: 104053859--104054032 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
104053849 TGTAACCCGC
* * * * *
104053859 CCATAAGTGAACTCAGACTCAACTCAA--AGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
104053903 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
104053953 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
104053996 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
104054033 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 27 0.25
45 2 0.02
46 35 0.33
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:104054051 original size:46 final size:45
Alignment explanation
Indices: 104053910--104054051 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 45
104053900 CATCCATAAA
104053910 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AG
* * * *
104053957 CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTAG
104054003 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
104054049 TGA
1 TGA
104054052 CATGTCACTT
Statistics
Matches: 78, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.42
47 31 0.40
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:104055001 original size:17 final size:17
Alignment explanation
Indices: 104054979--104055021 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
104054969 GCTTTTGCCA
104054979 CAACACTTTCACAAGTG
1 CAACACTTTCACAAGTG
104054996 CAACACTTTCACAAGTG
1 CAACACTTTCACAAGTG
104055013 CAACACTTT
1 CAACACTTT
104055022 TATTTCTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.26
Consensus pattern (17 bp):
CAACACTTTCACAAGTG
Found at i:104059367 original size:46 final size:46
Alignment explanation
Indices: 104059200--104059375 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
104059190 TGTAACCCGC
* * * * *
104059200 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTTGCAT
* * *
104059246 CCATAAATGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA---C-ATTTGCAT
* * * *
104059296 -C-TCA-CGAATTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTTGCAT
*
104059339 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
104059376 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.58
47 27 0.25
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTTGCAT
Found at i:104059394 original size:46 final size:45
Alignment explanation
Indices: 104059253--104059394 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 45
104059243 CATCCATAAA
*
104059253 TGAACTCGGACTCAACTCAACAAGTTCGGATGC-CTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AG
* * * * *
104059300 CGAATTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTAG
104059346 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
104059392 TGA
1 TGA
104059395 CATGTCACTT
Statistics
Matches: 75, Mismatches: 11, Indels: 19
0.71 0.10 0.18
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 32 0.43
47 29 0.39
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:104060217 original size:13 final size:13
Alignment explanation
Indices: 104060199--104060270 Score: 58
Period size: 13 Copynumber: 5.5 Consensus size: 13
104060189 CAGGATATTA
104060199 CACACGGCCGGGG
1 CACACGGCCGGGG
* *
104060212 CACACGGGCGTGTG
1 CACACGGCCG-GGG
*
104060226 -ACACGGCCGGGC
1 CACACGGCCGGGG
* * *
104060238 CATACGGGCGTGTG
1 CACACGGCCG-GGG
104060252 -ACACGGCCGGGG
1 CACACGGCCGGGG
104060264 CACACGG
1 CACACGG
104060271 GCATGTGATC
Statistics
Matches: 43, Mismatches: 12, Indels: 8
0.68 0.19 0.13
Matches are distributed among these distances:
12 3 0.07
13 37 0.86
14 3 0.07
ACGTcount: A:0.17, C:0.33, G:0.43, T:0.07
Consensus pattern (13 bp):
CACACGGCCGGGG
Found at i:104060236 original size:26 final size:26
Alignment explanation
Indices: 104060200--104060278 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
104060190 AGGATATTAC
104060200 ACACGGCCGGGGCACACGGGCGTGTG
1 ACACGGCCGGGGCACACGGGCGTGTG
* *
104060226 ACACGGCCGGGCCATACGGGCGTGTG
1 ACACGGCCGGGGCACACGGGCGTGTG
*
104060252 ACACGGCCGGGGCACACGGGCATGTG
1 ACACGGCCGGGGCACACGGGCGTGTG
104060278 A
1 A
104060279 TCCTTGCAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.18, C:0.30, G:0.43, T:0.09
Consensus pattern (26 bp):
ACACGGCCGGGGCACACGGGCGTGTG
Found at i:104061604 original size:25 final size:25
Alignment explanation
Indices: 104061576--104061628 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
104061566 TGAATAAGTG
* *
104061576 ATTGAATGAGTTGATTTTTATTGTA
1 ATTGAATGAGTTAATTTTGATTGTA
104061601 ATTGAATGAGTTAATTTTGATTGTA
1 ATTGAATGAGTTAATTTTGATTGTA
104061626 ATT
1 ATT
104061629 AGATCAGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.30, C:0.00, G:0.19, T:0.51
Consensus pattern (25 bp):
ATTGAATGAGTTAATTTTGATTGTA
Found at i:104062022 original size:43 final size:42
Alignment explanation
Indices: 104061902--104062022 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 42
104061892 TACCGAGATG
* * * * *
104061902 TGATTACATGTAAGACCCTGTGTGGACAGTGGCGTTATATTA
1 TGATTACGTATAAGACCCTGTGTGGACAGTGGCATCATATAA
* *
104061944 TGATTACGTATAAGACCATGTGTGGGACA-TCGGCATCGT-TAA
1 TGATTACGTATAAGACCCTGTGT-GGACAGT-GGCATCATATAA
*
104061986 TCGATTTCGTATAAGACCCTGTGTGGAACAGTGGCAT
1 T-GATTACGTATAAGACCCTGTGTGG-ACAGTGGCAT
104062023 TGATATGTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
42 26 0.40
43 38 0.58
44 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
TGATTACGTATAAGACCCTGTGTGGACAGTGGCATCATATAA
Found at i:104065858 original size:17 final size:17
Alignment explanation
Indices: 104065836--104065870 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
104065826 AGTTGAGAGT
*
104065836 CAAAAACTCCGATGTGC
1 CAAAAACTCCGATATGC
104065853 CAAAAACTCCGATATGC
1 CAAAAACTCCGATATGC
104065870 C
1 C
104065871 TTTCGGATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.31, G:0.14, T:0.17
Consensus pattern (17 bp):
CAAAAACTCCGATATGC
Found at i:104069562 original size:43 final size:42
Alignment explanation
Indices: 104069501--104069624 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 42
104069491 GTTACCGATA
* * * * *
104069501 TATGATTACATGTAAGACCCTGTGTGGGGCAGTGGCGTTGTAT
1 TATGATTACGTATAAGACCCTGTGTGGGACAGTGGCATCGT-T
* *
104069544 TATGATTACGTATAAGACCATGTGTGGGACA-TCAGCATCGTT
1 TATGATTACGTATAAGACCCTGTGTGGGACAGT-GGCATCGTT
* *
104069586 AATCGATTTCGTATAAGACCCTGTGTGGGACAGTGGCAT
1 TAT-GATTACGTATAAGACCCTGTGTGGGACAGTGGCAT
104069625 TGATATGTGT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 4 0.06
43 62 0.93
44 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (42 bp):
TATGATTACGTATAAGACCCTGTGTGGGACAGTGGCATCGTT
Found at i:104074119 original size:21 final size:21
Alignment explanation
Indices: 104074095--104074141 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
104074085 GATTAGAAGG
*
104074095 ATCATTACTATCGTATCCATT
1 ATCACTACTATCGTATCCATT
104074116 ATCACTACTATCGTATCCATT
1 ATCACTACTATCGTATCCATT
104074137 ATCAC
1 ATCAC
104074142 CAACCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.38
Consensus pattern (21 bp):
ATCACTACTATCGTATCCATT
Found at i:104075768 original size:105 final size:106
Alignment explanation
Indices: 104075531--104075797 Score: 311
Period size: 115 Copynumber: 2.4 Consensus size: 106
104075521 AACTAATAAT
* * * *
104075531 TAATTCATAATAGTTACTAACAAAATAACTTTCAAATAAATTAAAAAATATTAAAAGATTACATT
1 TAATTTATAATAGTTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAAATTACATT
* *
104075596 AATAACTTAACAAATCACAATAAACCCTAAACCCTAAACAAA
66 AATAACCTAACAAATCACAATAAACACTAAA-CCTAAACAAA
* * * *
104075638 CAATTAACCTAATCACAAAACTTACTAACAAAATAACTTTAAAATAAATTAAAAATTAATAAAAA
1 TAATT----T-AT---AATAGTTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAA
* * *
104075703 ATTACATTCATAACCTAACAAATCACAATAAACATTAAA-CTAAACAGA
58 ATTACATTAATAACCTAACAAATCACAATAAACACTAAACCTAAACAAA
* *
104075751 TAATTTATAATAGTTACTATCAAAATAACTTTAAAATAGATTAAAAA
1 TAATTTATAATAGTTACTAACAAAATAACTTTAAAATAAATTAAAAA
104075798 CAGCATAAAA
Statistics
Matches: 134, Mismatches: 18, Indels: 18
0.79 0.11 0.11
Matches are distributed among these distances:
105 35 0.26
107 4 0.03
108 2 0.01
109 1 0.01
112 2 0.01
113 12 0.09
115 78 0.58
ACGTcount: A:0.56, C:0.15, G:0.02, T:0.28
Consensus pattern (106 bp):
TAATTTATAATAGTTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAAATTACATT
AATAACCTAACAAATCACAATAAACACTAAACCTAAACAAA
Found at i:104076325 original size:29 final size:29
Alignment explanation
Indices: 104076257--104076314 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
104076247 AGACACCATC
104076257 CCTACTGACATACCATTTTGATATTTAAT
1 CCTACTGACATACCATTTTGATATTTAAT
*
104076286 CCTACTGACATACCATTTTGGTATTTAAT
1 CCTACTGACATACCATTTTGATATTTAAT
104076315 TTTTTTTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (29 bp):
CCTACTGACATACCATTTTGATATTTAAT
Found at i:104078102 original size:24 final size:24
Alignment explanation
Indices: 104078070--104078127 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
104078060 GGTGCAGAAT
* * *
104078070 CATCATCATTTTCAACAACAGCAA
1 CATCATCATCTGCAACAACAACAA
*
104078094 CATCATCATCTGCAACAGCAACAA
1 CATCATCATCTGCAACAACAACAA
*
104078118 CATCAACATC
1 CATCATCATC
104078128 AACAGCAGTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.41, C:0.33, G:0.05, T:0.21
Consensus pattern (24 bp):
CATCATCATCTGCAACAACAACAA
Found at i:104078130 original size:21 final size:21
Alignment explanation
Indices: 104078085--104078134 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
104078075 TCATTTTCAA
* *
104078085 CAACAGCAACATCATCATCTG
1 CAACAGCAACAACATCAACTG
104078106 CAACAGCAACAACATCAACAT-
1 CAACAGCAACAACATCAAC-TG
104078127 CAACAGCA
1 CAACAGCA
104078135 GTGGCTCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.46, C:0.34, G:0.08, T:0.12
Consensus pattern (21 bp):
CAACAGCAACAACATCAACTG
Found at i:104078384 original size:13 final size:15
Alignment explanation
Indices: 104078366--104078397 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
104078356 ATGTTTACAG
104078366 TTATTG-ATTTT-TT
1 TTATTGAATTTTCTT
104078379 TTATTGAATTTTCTT
1 TTATTGAATTTTCTT
104078394 TTAT
1 TTAT
104078398 GTATTGCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 5 0.29
15 6 0.35
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.72
Consensus pattern (15 bp):
TTATTGAATTTTCTT
Found at i:104082716 original size:10 final size:10
Alignment explanation
Indices: 104082694--104082785 Score: 52
Period size: 10 Copynumber: 9.5 Consensus size: 10
104082684 CACATGTGAC
104082694 AAAAAATTAAT
1 AAAAAATT-AT
104082705 AAAAAATTAT
1 AAAAAATTAT
*
104082715 -AAAAGTTAT
1 AAAAAATTAT
* **
104082724 TAAATTTTA-
1 AAAAAATTAT
104082733 ATAAAAATT-T
1 A-AAAAATTAT
*
104082743 AAGAAA-TAT
1 AAAAAATTAT
104082752 --AAAATTAGT
1 AAAAAATTA-T
*
104082761 AAAAAAATAT
1 AAAAAATTAT
*
104082771 AAAATATTAT
1 AAAAAATTAT
104082781 AAAAA
1 AAAAA
104082786 TCATTAAAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 17
0.68 0.13 0.19
Matches are distributed among these distances:
7 3 0.05
8 3 0.05
9 14 0.23
10 27 0.44
11 14 0.23
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:104082786 original size:18 final size:18
Alignment explanation
Indices: 104082733--104082786 Score: 58
Period size: 19 Copynumber: 3.0 Consensus size: 18
104082723 TTAAATTTTA
104082733 ATAAAA-ATT-TAAGAAAT
1 ATAAAATATTATAA-AAAT
* *
104082750 ATAAAATTAGTAAAAAAAT
1 ATAAAA-TATTATAAAAAT
104082769 ATAAAATATTATAAAAAT
1 ATAAAATATTATAAAAAT
104082787 CATTAAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
17 6 0.20
18 10 0.33
19 12 0.40
20 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAAAATATTATAAAAAT
Found at i:104083080 original size:29 final size:30
Alignment explanation
Indices: 104082972--104083100 Score: 85
Period size: 29 Copynumber: 4.4 Consensus size: 30
104082962 TATGATAATA
* *
104082972 TTTATAATTCTTTTATGAATTT-TATAT-T
1 TTTATAATTTTTTTATCAATTTCTATATAT
* *
104083000 TCTT-TACATTTTTTTATCATTTTC-ATATGAC
1 T-TTATA-ATTTTTTTATCAATTTCTATAT-AT
**
104083031 TTTATAA-AGTTTTAT-ATATTTCTATATAT
1 TTTATAATTTTTTTATCA-ATTTCTATATAT
* *
104083060 TTTATAATTTTTTTA-CAATTTGTATATGT
1 TTTATAATTTTTTTATCAATTTCTATATAT
104083089 ATTT-TAATTTTT
1 -TTTATAATTTTT
104083101 AATAAAAATT
Statistics
Matches: 78, Mismatches: 12, Indels: 21
0.70 0.11 0.19
Matches are distributed among these distances:
28 4 0.05
29 55 0.71
30 16 0.21
31 3 0.04
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (30 bp):
TTTATAATTTTTTTATCAATTTCTATATAT
Found at i:104087052 original size:2 final size:2
Alignment explanation
Indices: 104087045--104087070 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
104087035 AACTAACCCA
104087045 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
104087071 TTACGAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:104095658 original size:20 final size:19
Alignment explanation
Indices: 104095633--104095673 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
104095623 AAGTAAAAGA
104095633 TATTT-ATTGATTATTATTAT
1 TATTTAATTGA-TATTA-TAT
104095653 TATTTAATTGATATTATAT
1 TATTTAATTGATATTATAT
104095672 TA
1 TA
104095674 GTGAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 10 0.50
21 5 0.25
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
TATTTAATTGATATTATAT
Found at i:104096974 original size:11 final size:12
Alignment explanation
Indices: 104096960--104097002 Score: 63
Period size: 11 Copynumber: 3.8 Consensus size: 12
104096950 TTGATTGTAT
104096960 ATTGAAA-TGAA
1 ATTGAAATTGAA
*
104096971 ATTGAAATTGAT
1 ATTGAAATTGAA
104096983 A-TGAAATTGAA
1 ATTGAAATTGAA
104096994 ATTGAAATT
1 ATTGAAATT
104097003 AAAAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 17 0.61
12 11 0.39
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.35
Consensus pattern (12 bp):
ATTGAAATTGAA
Found at i:104096978 original size:6 final size:6
Alignment explanation
Indices: 104096960--104097002 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
104096950 TTGATTGTAT
*
104096960 ATTGAA A-TGAA ATTGAA ATTGAT A-TGAA ATTGAA ATTGAA ATT
1 ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATT
104097003 AAAAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 9 0.27
6 24 0.73
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.35
Consensus pattern (6 bp):
ATTGAA
Found at i:104096986 original size:17 final size:17
Alignment explanation
Indices: 104096960--104097001 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
104096950 TTGATTGTAT
104096960 ATTGAAATGAAATTGAA
1 ATTGAAATGAAATTGAA
*
104096977 ATTGATATGAAATTGAA
1 ATTGAAATGAAATTGAA
104096994 ATTGAAAT
1 ATTGAAAT
104097002 TAAAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (17 bp):
ATTGAAATGAAATTGAA
Found at i:104096993 original size:23 final size:24
Alignment explanation
Indices: 104096953--104097002 Score: 77
Period size: 23 Copynumber: 2.1 Consensus size: 24
104096943 TATTGAATTG
104096953 ATTGTATATTGAAATGAAATTGAA
1 ATTGTATATTGAAATGAAATTGAA
104096977 ATTG-ATA-TGAAATTGAAATTGAA
1 ATTGTATATTGAAA-TGAAATTGAA
104097000 ATT
1 ATT
104097003 AAAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 5 0.20
23 16 0.64
24 4 0.16
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (24 bp):
ATTGTATATTGAAATGAAATTGAA
Found at i:104097106 original size:13 final size:14
Alignment explanation
Indices: 104097088--104097117 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
104097078 TTTGGAAAGG
104097088 GATTTGGAGATG-T
1 GATTTGGAGATGCT
104097101 GATTTGGAGATGCT
1 GATTTGGAGATGCT
104097115 GAT
1 GAT
104097118 GTTTATATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.23, C:0.03, G:0.37, T:0.37
Consensus pattern (14 bp):
GATTTGGAGATGCT
Found at i:104097209 original size:28 final size:28
Alignment explanation
Indices: 104097162--104097269 Score: 137
Period size: 28 Copynumber: 3.8 Consensus size: 28
104097152 TTGTGCGATT
** * *
104097162 CTGGTGTATTTTGGATGGATTATATTATT
1 CTGGTGTGCTTTGGA-GGATTATATGATA
*
104097191 TTGGTGTG-TTTGGGAGGATTATATGATA
1 CTGGTGTGCTTT-GGAGGATTATATGATA
104097219 CTGGTGTGCTTTGGAGGATTATATGATA
1 CTGGTGTGCTTTGGAGGATTATATGATA
*
104097247 CCGGTGTGCTTTGGAGGATTATA
1 CTGGTGTGCTTTGGAGGATTATA
104097270 CTAGCGTGTT
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
28 59 0.83
29 12 0.17
ACGTcount: A:0.20, C:0.06, G:0.31, T:0.43
Consensus pattern (28 bp):
CTGGTGTGCTTTGGAGGATTATATGATA
Found at i:104098903 original size:12 final size:12
Alignment explanation
Indices: 104098886--104098918 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
104098876 CTGCCCGCCC
104098886 ATATTAATTTTT
1 ATATTAATTTTT
104098898 ATATT-ATTTTT
1 ATATTAATTTTT
104098909 ATA-TAATTTT
1 ATATTAATTTT
104098919 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:104098937 original size:17 final size:18
Alignment explanation
Indices: 104098917--104098958 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
104098907 TTATATAATT
*
104098917 TTAAAATATA-TAATACA
1 TTAAAATATACTAAAACA
104098934 TTAAAA-ATACTAAAACA
1 TTAAAATATACTAAAACA
*
104098951 TCAAAATA
1 TTAAAATA
104098959 AATATTTCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 3 0.14
17 17 0.81
18 1 0.05
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.29
Consensus pattern (18 bp):
TTAAAATATACTAAAACA
Found at i:104099075 original size:30 final size:30
Alignment explanation
Indices: 104099039--104099101 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
104099029 ACTTAACAAG
104099039 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
104099069 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
104099099 CAA
1 CAA
104099102 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:104102162 original size:17 final size:17
Alignment explanation
Indices: 104102142--104102240 Score: 135
Period size: 17 Copynumber: 5.6 Consensus size: 17
104102132 CAATGATATG
104102142 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
* *
104102159 CAATCTTAAATATGATTG
1 CAATCTTAGATATGA-TA
104102177 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
104102194 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
104102212 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
104102231 CAATCTTAGA
1 CAATCTTAGA
104102241 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 30 0.42
18 30 0.42
19 11 0.15
20 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:104102180 original size:35 final size:35
Alignment explanation
Indices: 104102134--104102238 Score: 174
Period size: 35 Copynumber: 2.9 Consensus size: 35
104102124 ATAATCTTCA
104102134 ATGATATGCAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
104102170 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
104102205 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTA
104102239 GAAGATATGA
Statistics
Matches: 66, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 50 0.76
36 5 0.08
37 11 0.17
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:104102182 original size:18 final size:18
Alignment explanation
Indices: 104102142--104102240 Score: 148
Period size: 18 Copynumber: 5.6 Consensus size: 18
104102132 CAATGATATG
104102142 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
* *
104102159 CAATCTTAAATATGATTG
1 CAATCTTAGATATGATTA
104102177 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
104102194 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
104102212 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
104102231 CAATCTTAGA
1 CAATCTTAGA
104102241 AGATATGATT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 30 0.41
18 32 0.44
19 11 0.15
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:104102564 original size:12 final size:11
Alignment explanation
Indices: 104102549--104102582 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
104102539 TATTTTTAAT
104102549 TTATTATATATA
1 TTATT-TATATA
104102561 TTATTTATTATA
1 TTATTTA-TATA
104102573 TTATTTATAT
1 TTATTTATAT
104102583 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:104102574 original size:21 final size:21
Alignment explanation
Indices: 104102550--104102658 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
104102540 ATTTTTAATT
104102550 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
104102571 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
104102589 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
104102608 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
104102631 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
104102652 TATTATA
1 TATTATA
104102659 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:104102580 original size:16 final size:16
Alignment explanation
Indices: 104102547--104102577 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
104102537 CTTATTTTTA
104102547 ATTTATTATATATATT
1 ATTTATTATATATATT
104102563 ATTTATTATAT-TATT
1 ATTTATTATATATATT
104102578 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:104102615 original size:7 final size:7
Alignment explanation
Indices: 104102598--104102704 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
104102588 AAATTTGTAA
104102598 ATTAT-T
1 ATTATAT
104102604 ATTATAT
1 ATTATAT
104102611 ATTATAT
1 ATTATAT
104102618 -TT-TA-
1 ATTATAT
104102622 ACTTATAT
1 A-TTATAT
104102630 ATCTTATAT
1 A--TTATAT
*
104102639 ATTTATTT
1 A-TTATAT
104102647 ATT-TAT
1 ATTATAT
*
104102653 ATTATAC
1 ATTATAT
104102660 ATTAT-T
1 ATTATAT
* *
104102666 -TTAAAA
1 ATTATAT
*
104102672 ACTTACAT
1 A-TTATAT
*
104102680 -TTTTAT
1 ATTATAT
104102686 ATTATAT
1 ATTATAT
*
104102693 ATTATAA
1 ATTATAT
104102700 ATTAT
1 ATTAT
104102705 TTCATTTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:104103047 original size:3 final size:3
Alignment explanation
Indices: 104103039--104103074 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
104103029 TATGTTACTA
*
104103039 TAT TAT TAT TAT TAT TAT TAT TAT TTT TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
104103075 GTATTTGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:104106050 original size:2 final size:2
Alignment explanation
Indices: 104106035--104106073 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
104106025 TTAAAAAAAA
* *
104106035 AG AG AA AG AA AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
104106074 GGTCACGGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (2 bp):
AG
Found at i:104114620 original size:78 final size:78
Alignment explanation
Indices: 104114491--104114785 Score: 484
Period size: 78 Copynumber: 3.8 Consensus size: 78
104114481 CGAAAAAACA
** * *
104114491 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
104114556 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
104114569 GATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
104114634 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
104114647 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACTTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
104114711 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
104114725 GATTTGGCATCTCTGTATTAGACGGCGAGCAAATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
104114786 GTGTTTACGT
Statistics
Matches: 201, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
77 1 0.00
78 199 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:104114775 original size:156 final size:159
Alignment explanation
Indices: 104114490--104114865 Score: 494
Period size: 156 Copynumber: 2.3 Consensus size: 159
104114480 TCGAAAAAAC
** * * *
104114490 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGA
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGACCTTCATTGA
* *
104114555 AGCAGATCCAAGATGATTTGACATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATC
65 AGCAGATCCAAGATGATTTGACATCTCTGTATTAGACGGCGAGCAAATCGAAGACACAGCAGATC
104114620 TGACCTTCA-T-T-GAAGCAGATCCAAGAT
130 TGACCTTCATTATCGAAGCAGATCCAAGAT
*
104114647 -GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACTTTCATTGA
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATT-GACCTTCATTGA
* *
104114711 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGCGAGCAAATCGAAGACATAGCAGATC
65 AGCAGATCCAAGATGATTTGACATCTCTGTATTAGACGGCGAGCAAATCGAAGACACAGCAGATC
104114776 TGACCTTCATGTGTTTACGTCGAAGCAGATCCAAGAT
130 TGACCTTCA-----TTA--TCGAAGCAGATCCAAGAT
* *
104114813 GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG--GAGATAACAGATT
1 ---AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATT
104114866 TGGTATCTCT
Statistics
Matches: 192, Mismatches: 12, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
155 1 0.01
156 126 0.66
162 1 0.01
165 1 0.01
166 16 0.08
168 12 0.06
170 35 0.18
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (159 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTGACCTTCATTGAA
GCAGATCCAAGATGATTTGACATCTCTGTATTAGACGGCGAGCAAATCGAAGACACAGCAGATCT
GACCTTCATTATCGAAGCAGATCCAAGAT
Found at i:104114878 original size:45 final size:45
Alignment explanation
Indices: 104114725--104114954 Score: 230
Period size: 45 Copynumber: 5.1 Consensus size: 45
104114715 GATCCAAGAT
* *
104114725 GATTTGGCATCTCTGTATTAGACGGCGAGCAAATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAG--ATAACA
* * * * * * * * * *
104114772 GATCTGACCT-TCATGTGTT-TACGTCGAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGTATTAGACG-GGGAGCAAATCGAAGATAACA
*
104114817 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* * *
104114862 GATTTGGTATCTCTGTATTAGACGGGGAGCAGATCGAAAATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
* * * *
104114907 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
104114952 GAT
1 GAT
104114955 ATCGCCTTCC
Statistics
Matches: 147, Mismatches: 32, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
45 115 0.78
46 10 0.07
47 22 0.15
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACA
Found at i:104115322 original size:17 final size:17
Alignment explanation
Indices: 104115313--104115379 Score: 89
Period size: 17 Copynumber: 3.8 Consensus size: 17
104115303 CTTCAATGAT
104115313 ATGCAATCTTAGATATG
1 ATGCAATCTTAGATATG
* *
104115330 ATACAATCTTAAATATG
1 ATGCAATCTTAGATATG
104115347 ATTGCAATCTTAGATATG
1 A-TGCAATCTTAGATATG
104115365 ATATGCAATCTTAGA
1 --ATGCAATCTTAGA
104115380 AGATATGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
17 16 0.37
18 14 0.33
19 12 0.28
20 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (17 bp):
ATGCAATCTTAGATATG
Found at i:104115354 original size:35 final size:37
Alignment explanation
Indices: 104115308--104115377 Score: 117
Period size: 35 Copynumber: 1.9 Consensus size: 37
104115298 ATAATCTTCA
104115308 ATGATATGCAATCTTAGATATGATA-CAATCTTAAAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAAAT
104115344 ATGAT-TGCAATCTTAGATATGATATGCAATCTTA
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTA
104115378 GAAGATATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.59
36 5 0.16
37 8 0.25
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAAAT
Found at i:104115386 original size:17 final size:19
Alignment explanation
Indices: 104115308--104115379 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
104115298 ATAATCTTCA
104115308 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
104115327 ATGATA--CAATCTTAAAT
1 ATGATATGCAATCTTAGAT
104115344 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
104115362 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
104115380 AGATATGATT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 15 0.31
18 15 0.31
19 18 0.38
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:104115693 original size:17 final size:17
Alignment explanation
Indices: 104115668--104115703 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
104115658 ATGTTTCCCG
*
104115668 AATTTTTTTATATATTTT
1 AATTTTTTAATA-ATTTT
104115686 AATTTTTTAATAATTTT
1 AATTTTTTAATAATTTT
104115703 A
1 A
104115704 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
AATTTTTTAATAATTTT
Found at i:104117305 original size:24 final size:24
Alignment explanation
Indices: 104117278--104117328 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
104117268 ACACAATTTG
104117278 ATTATCATAATTTTTATTTTAAAA
1 ATTATCATAATTTTTATTTTAAAA
* * *
104117302 ATTATTATGATTTTTATTTTAAGA
1 ATTATCATAATTTTTATTTTAAAA
104117326 ATT
1 ATT
104117329 TTTGAAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (24 bp):
ATTATCATAATTTTTATTTTAAAA
Found at i:104120690 original size:16 final size:16
Alignment explanation
Indices: 104120671--104120702 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
104120661 TTCGTATAAC
104120671 TTTATGTAAATATTTT
1 TTTATGTAAATATTTT
*
104120687 TTTATGTATATATTTT
1 TTTATGTAAATATTTT
104120703 CTTTTCAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (16 bp):
TTTATGTAAATATTTT
Found at i:104125016 original size:17 final size:18
Alignment explanation
Indices: 104124983--104125016 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
104124973 AAATTTTTTA
104124983 ATGATTTCTTGTATTATC
1 ATGATTTCTTGTATTATC
*
104125001 ATGATTT-TTTTATTAT
1 ATGATTTCTTGTATTAT
104125017 ATATTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.62
Consensus pattern (18 bp):
ATGATTTCTTGTATTATC
Found at i:104131341 original size:40 final size:40
Alignment explanation
Indices: 104131282--104131489 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
104131272 CAATTGAATG
* * * *
104131282 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
104131322 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
104131362 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
104131402 AAATCCTGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
104131442 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
104131482 ATATCCGG
1 ATATCCGG
104131490 TTGTAATCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:104139480 original size:40 final size:40
Alignment explanation
Indices: 104139421--104139628 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
104139411 CAATTGAATG
* * *
104139421 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
104139461 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
104139501 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
104139541 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
104139581 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
104139621 ATATCCGG
1 ATATCCGG
104139629 TTGTAATCCG
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:104139559 original size:80 final size:80
Alignment explanation
Indices: 104139423--104139628 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
104139413 ATTGAATGAT
* * * * * *
104139423 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
104139488 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
104139503 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
104139568 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
104139583 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
104139629 TTGTAATCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:104145191 original size:10 final size:10
Alignment explanation
Indices: 104145158--104145198 Score: 55
Period size: 10 Copynumber: 3.8 Consensus size: 10
104145148 GTTATTTAAA
104145158 TTTTTTTATT
1 TTTTTTTATT
104145168 TTTGTTACTTATT
1 TTT-TT--TTATT
104145181 TTTTTTTATT
1 TTTTTTTATT
104145191 TTTTTTTA
1 TTTTTTTA
104145199 AAAAAATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 16 0.57
11 2 0.07
12 2 0.07
13 8 0.29
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:104145952 original size:23 final size:26
Alignment explanation
Indices: 104145893--104145953 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 26
104145883 TATAAGGACT
104145893 TATGACATATTTTAACTTAGTATAAAA
1 TATGA-ATATTTTAACTTAGTATAAAA
*
104145920 TATTAATATTTTAA-TTA-TAT-AAA
1 TATGAATATTTTAACTTAGTATAAAA
*
104145943 TATGAGTATTT
1 TATGAATATTT
104145954 ATTTAAATCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 12 0.39
24 3 0.10
25 3 0.10
26 9 0.29
27 4 0.13
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.48
Consensus pattern (26 bp):
TATGAATATTTTAACTTAGTATAAAA
Found at i:104149289 original size:29 final size:29
Alignment explanation
Indices: 104149214--104149290 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
104149204 TAAAATTCAA
*
104149214 AAAGTATAAGGACTAAAATTGATCAATTT
1 AAAGTATAAGGACTAAATTTGATCAATTT
* * *
104149243 AAAGTGTACAGAACTAAATTTGAT-TATATT
1 AAAGTATA-AGGACTAAATTTGATCAAT-TT
*
104149273 AAAGTATAAGGATTAAAT
1 AAAGTATAAGGACTAAAT
104149291 CCATAATTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 17 0.44
30 22 0.56
ACGTcount: A:0.48, C:0.05, G:0.14, T:0.32
Consensus pattern (29 bp):
AAAGTATAAGGACTAAATTTGATCAATTT
Found at i:104151033 original size:53 final size:54
Alignment explanation
Indices: 104150923--104151033 Score: 215
Period size: 54 Copynumber: 2.1 Consensus size: 54
104150913 GTCAAAAAGG
104150923 TAAACACATTTAAAATATAAAAATTAAAATATAATACAAAAATTCACCCGATTA
1 TAAACACATTTAAAATATAAAAATTAAAATATAATACAAAAATTCACCCGATTA
104150977 TAAACACATTTAAAATATAAAAATTAAAA-ATAATACAAAAATTCACCCGATTA
1 TAAACACATTTAAAATATAAAAATTAAAATATAATACAAAAATTCACCCGATTA
104151030 TAAA
1 TAAA
104151034 ATAAAAAAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 28 0.49
54 29 0.51
ACGTcount: A:0.59, C:0.13, G:0.02, T:0.27
Consensus pattern (54 bp):
TAAACACATTTAAAATATAAAAATTAAAATATAATACAAAAATTCACCCGATTA
Found at i:104151045 original size:53 final size:54
Alignment explanation
Indices: 104150934--104151045 Score: 165
Period size: 53 Copynumber: 2.1 Consensus size: 54
104150924 AAACACATTT
* ***
104150934 AAAATATAAAAATTAAAATATAATACAAAAATTCACCCGATTATAAACACATTT
1 AAAATATAAAAATTAAAATATAATACAAAAATTCACCCGATTATAAACAAAAAA
104150988 AAAATATAAAAATTAAAA-ATAATACAAAAATTCACCCGATTATAAA-ATAAAAA
1 AAAATATAAAAATTAAAATATAATACAAAAATTCACCCGATTATAAACA-AAAAA
104151041 AAAAT
1 AAAAT
104151046 CCTTACTCAT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
52 1 0.02
53 34 0.64
54 18 0.34
ACGTcount: A:0.62, C:0.11, G:0.02, T:0.25
Consensus pattern (54 bp):
AAAATATAAAAATTAAAATATAATACAAAAATTCACCCGATTATAAACAAAAAA
Found at i:104153799 original size:2 final size:2
Alignment explanation
Indices: 104153792--104153832 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
104153782 TATACTTGTG
104153792 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
104153833 AAGTGAGTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:104158273 original size:24 final size:23
Alignment explanation
Indices: 104158244--104158290 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
104158234 ACGCAACTCT
104158244 TTATGAGCGTT-CTGATATAGGCTC
1 TTATGAGC-TTCCTGATAT-GGCTC
104158268 TTATGAGCTTCCTGATATGGCTC
1 TTATGAGCTTCCTGATATGGCTC
104158291 GCTTGAACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (23 bp):
TTATGAGCTTCCTGATATGGCTC
Found at i:104160931 original size:20 final size:20
Alignment explanation
Indices: 104160915--104160951 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
104160905 ACGGATGGTT
*
104160915 TACTGTTTATATAGATGAAA
1 TACTGTTTATACAGATGAAA
104160935 TACTGTTTATAC-GATGA
1 TACTGTTTATACAGATGA
104160952 GTCACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.35, C:0.08, G:0.16, T:0.41
Consensus pattern (20 bp):
TACTGTTTATACAGATGAAA
Found at i:104166600 original size:74 final size:74
Alignment explanation
Indices: 104166479--104166622 Score: 279
Period size: 74 Copynumber: 1.9 Consensus size: 74
104166469 TGAAACAAAA
104166479 GCTTTTAGCTAAAAAGATGGATAGAGCAAACAACTACTTTTTTAGCAATTTAGCCTCAAAATTTA
1 GCTTTTAGCTAAAAAGATGGATAGAGCAAACAACTACTTTTTTAGCAATTTAGCCTCAAAATTTA
104166544 GTGGAGTGT
66 GTGGAGTGT
*
104166553 GCTTTTAGCTAAAAAGATGGATGGAGCAAACAACTACTTTTTTAGCAATTTAGCCTCAAAATTTA
1 GCTTTTAGCTAAAAAGATGGATAGAGCAAACAACTACTTTTTTAGCAATTTAGCCTCAAAATTTA
104166618 GTGGA
66 GTGGA
104166623 ATGTCCCTAA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (74 bp):
GCTTTTAGCTAAAAAGATGGATAGAGCAAACAACTACTTTTTTAGCAATTTAGCCTCAAAATTTA
GTGGAGTGT
Found at i:104172645 original size:73 final size:72
Alignment explanation
Indices: 104172568--104172731 Score: 172
Period size: 72 Copynumber: 2.3 Consensus size: 72
104172558 AGTAACTCGC
* * * * *
104172568 TGAGCGAGCATTTCATGTTAAAGCCATATGGGTCAGAGTATTGACTTTGTGTACA-GTCCCGTGA
1 TGAGCGAGCATTACATGATAAAGCCATA-GGGTCAGAGTACTGACTTGGTGAACATG-CCCGTGA
104172632 GTAGCTCAA
64 GTAGCTCAA
* * * * * *
104172641 TGAGCGGGCGTTACATGATAATGCTATAGGGTCCGGGTACTGACTTGGTGAACATGCCCGTGAGT
1 TGAGCGAGCATTACATGATAAAGCCATAGGGTCAGAGTACTGACTTGGTGAACATGCCCGTGAGT
104172706 AGCTCAA
66 AGCTCAA
*
104172713 --ATGCGAGTATTACATGATA
1 TGA-GCGAGCATTACATGATA
104172732 TGTGGTAGCT
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
70 1 0.01
71 14 0.19
72 37 0.49
73 23 0.31
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (72 bp):
TGAGCGAGCATTACATGATAAAGCCATAGGGTCAGAGTACTGACTTGGTGAACATGCCCGTGAGT
AGCTCAA
Found at i:104181259 original size:17 final size:19
Alignment explanation
Indices: 104181219--104181259 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
104181209 TCTAATAGAA
*
104181219 AAATTAATTCATTTTTATG
1 AAATTAAGTCATTTTTATG
*
104181238 CAATTAAGT-ATTTTT-TG
1 AAATTAAGTCATTTTTATG
104181255 AAATT
1 AAATT
104181260 TTACAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
17 6 0.32
18 6 0.32
19 7 0.37
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (19 bp):
AAATTAAGTCATTTTTATG
Found at i:104182638 original size:286 final size:286
Alignment explanation
Indices: 104182126--104182699 Score: 1031
Period size: 286 Copynumber: 2.0 Consensus size: 286
104182116 ACTTGAACCT
* *
104182126 AATTATTAATTTAAATAACATAATTTGCCAATTCAAAATTTATTTTAATGCTATAATTGACTCGT
1 AATTATTAATTCAAATAACATAATTTGCCAATTCAAAATTAATTTTAATGCTATAATTGACTCGT
* *
104182191 AAATATTTAATAATAATATTTACGAACTCACTTGTTGGATTTGTGGCCCCGAAACCACTGTTTCT
66 AAATATTTAATAATAATATTTACGAACTCACTTGTCGGATTTGTGGCCCCGAAACCACTATTTCT
*
104182256 AGCACCACTAAAAAACAATTGTTACACCACCATACTTGATGGTAATGCATTCAACCATGATCTGG
131 AGCACCACAAAAAAACAATTGTTACACCACCATACTTGATGGTAATGCATTCAACCATGATCTGG
* *
104182321 CACGATCAAGCAATGAATAAGGGAATGATTTTAATCTAAGGGCATCTTCAGGAACGCCCTACTGC
196 CACAATCAAGCAATGAATAAAGGAATGATTTTAATCTAAGGGCATCTTCAGGAACGCCCTACTGC
104182386 TTGAATGAGTCACAGACTTCAAGAAA
261 TTGAATGAGTCACAGACTTCAAGAAA
104182412 AATTATTAATTCAAATAACATAATTTGCCAATTCAAAATTAATTTTAATGCTATAATTGACTCGT
1 AATTATTAATTCAAATAACATAATTTGCCAATTCAAAATTAATTTTAATGCTATAATTGACTCGT
* *
104182477 AAATATTTAATAATAATATTTACGGACTCACTTGTCGGATTTGTGGCCCTGAAACCACTATTTCT
66 AAATATTTAATAATAATATTTACGAACTCACTTGTCGGATTTGTGGCCCCGAAACCACTATTTCT
* *
104182542 AGCACCACAAAAAAACAGTTGTTACATCACCATACTTGATGGTAATGCATTCAACCATGATCTGG
131 AGCACCACAAAAAAACAATTGTTACACCACCATACTTGATGGTAATGCATTCAACCATGATCTGG
* *
104182607 CACAATCAAGCAATGAATAAAGGAATGATTTTAATCTAAGGGCATCTTCAGGAATGCCTTACTGC
196 CACAATCAAGCAATGAATAAAGGAATGATTTTAATCTAAGGGCATCTTCAGGAACGCCCTACTGC
104182672 TTGAATGAGTCACAGACTTCAAGAAA
261 TTGAATGAGTCACAGACTTCAAGAAA
104182698 AA
1 AA
104182700 GTCTCAAGTG
Statistics
Matches: 275, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
286 275 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (286 bp):
AATTATTAATTCAAATAACATAATTTGCCAATTCAAAATTAATTTTAATGCTATAATTGACTCGT
AAATATTTAATAATAATATTTACGAACTCACTTGTCGGATTTGTGGCCCCGAAACCACTATTTCT
AGCACCACAAAAAAACAATTGTTACACCACCATACTTGATGGTAATGCATTCAACCATGATCTGG
CACAATCAAGCAATGAATAAAGGAATGATTTTAATCTAAGGGCATCTTCAGGAACGCCCTACTGC
TTGAATGAGTCACAGACTTCAAGAAA
Found at i:104194667 original size:14 final size:14
Alignment explanation
Indices: 104194648--104194677 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
104194638 TTATATCGAG
104194648 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
104194662 ACCAATCCAATTCA
1 ACCAATCCAAATCA
104194676 AC
1 AC
104194678 ATATTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:104202470 original size:14 final size:14
Alignment explanation
Indices: 104202451--104202480 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
104202441 TTATATCGAG
104202451 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
104202465 ACCAATCCAATTCA
1 ACCAATCCAAATCA
104202479 AC
1 AC
104202481 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:104206106 original size:29 final size:29
Alignment explanation
Indices: 104206073--104206146 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
104206063 GTGACGAGAT
104206073 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
104206102 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
104206131 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
104206147 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:104206162 original size:29 final size:28
Alignment explanation
Indices: 104206130--104206204 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
104206120 CTGGAAATAT
* *
104206130 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
104206159 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
104206187 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
104206205 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:104206173 original size:58 final size:57
Alignment explanation
Indices: 104206073--104206204 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
104206063 GTGACGAGAT
* * * * * *
104206073 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
104206131 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
104206188 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
104206205 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:104213979 original size:29 final size:29
Alignment explanation
Indices: 104213946--104214019 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
104213936 GTGACGAGAT
104213946 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
104213975 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
104214004 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
104214020 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:104214035 original size:29 final size:28
Alignment explanation
Indices: 104214003--104214077 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
104213993 CTGGAAATAT
* *
104214003 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
104214032 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
104214060 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
104214078 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:104214046 original size:58 final size:57
Alignment explanation
Indices: 104213946--104214077 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
104213936 GTGACGAGAT
* * * * * *
104213946 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
104214004 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
104214061 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
104214078 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:104216678 original size:2 final size:2
Alignment explanation
Indices: 104216671--104216700 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
104216661 TCAAATAAAC
104216671 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
104216701 TTCAATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:104219199 original size:32 final size:32
Alignment explanation
Indices: 104219158--104219220 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
104219148 GTCATAAGAG
104219158 GATGAAACGCATTGATTGAAAACATCACTTGT
1 GATGAAACGCATTGATTGAAAACATCACTTGT
*
104219190 GATGAAACGCATTGATTGAAAGCATCACTTG
1 GATGAAACGCATTGATTGAAAACATCACTTG
104219221 ATACGAGAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.27
Consensus pattern (32 bp):
GATGAAACGCATTGATTGAAAACATCACTTGT
Found at i:104221169 original size:18 final size:17
Alignment explanation
Indices: 104221131--104221174 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
104221121 TAAATATTCT
104221131 ATTAAT-TTAATATATA
1 ATTAATATTAATATATA
104221147 A-TAATATTAATATATA
1 ATTAATATTAATATATA
104221163 ATTTAATATTAA
1 A-TTAATATTAA
104221175 AGAGTTAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 4 0.16
16 12 0.48
18 9 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTAATATTAATATATA
Found at i:104224616 original size:31 final size:31
Alignment explanation
Indices: 104224583--104224647 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 31
104224573 TTGAAGAAAT
104224583 AAAAATAAATAATTTACTAAAATAAATAAATAAAG
1 AAAAATAAATAA--T-C-AAAATAAATAAATAAAG
*
104224618 AAAAATAAATAATCAAAATAAATCAATAAA
1 AAAAATAAATAATCAAAATAAATAAATAAA
104224648 CCAATCAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 15 0.52
32 1 0.03
33 1 0.03
35 12 0.41
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.23
Consensus pattern (31 bp):
AAAAATAAATAATCAAAATAAATAAATAAAG
Found at i:104226351 original size:40 final size:41
Alignment explanation
Indices: 104226279--104226361 Score: 98
Period size: 40 Copynumber: 2.0 Consensus size: 41
104226269 ATGAAGATGC
* * * *
104226279 TTAAAACTATTTATTTATTATTTTATGTTTTTA-ATTTTTA
1 TTAAAACTACTTATTTATTATTTTAAGATTTTAGAATTTTA
*
104226319 TTAAAACTACTT-TTTATTTTTATTAAGATTTTAGAATTTTA
1 TTAAAACTACTTATTTATTATT-TTAAGATTTTAGAATTTTA
104226360 TT
1 TT
104226362 TTATTATCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.22
40 20 0.56
41 8 0.22
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (41 bp):
TTAAAACTACTTATTTATTATTTTAAGATTTTAGAATTTTA
Found at i:104237418 original size:27 final size:26
Alignment explanation
Indices: 104237374--104237425 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
104237364 CTCGCTGCAA
*
104237374 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
104237401 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
104237426 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:104237511 original size:27 final size:25
Alignment explanation
Indices: 104237472--104237530 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 25
104237462 ATATATATAT
*
104237472 ATATCTGTTTGGTGGCCTAGCCACA
1 ATATCTGTTTGGTGACCTAGCCACA
* * *
104237497 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-T-TGGTGACCTAGCCACA
104237524 ATATCTG
1 ATATCTG
104237531 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.29
26 1 0.04
27 19 0.68
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (25 bp):
ATATCTGTTTGGTGACCTAGCCACA
Found at i:104269281 original size:10 final size:10
Alignment explanation
Indices: 104269252--104269311 Score: 50
Period size: 10 Copynumber: 5.7 Consensus size: 10
104269242 ATTTTTGAAG
*
104269252 ACTTTTATTT
1 ACTTTTTTTT
*
104269262 A-TTATTTTT
1 ACTTTTTTTT
104269271 ACTTTTTTTT
1 ACTTTTTTTT
104269281 ACTTTTATCTTT
1 ACTTTT-T-TTT
*
104269293 ATTTATCTTTTT
1 ACTT-T-TTTTT
104269305 ACTTTTT
1 ACTTTTT
104269312 ATTTTTTAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
9 7 0.17
10 16 0.40
11 2 0.05
12 12 0.30
13 2 0.05
14 1 0.03
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (10 bp):
ACTTTTTTTT
Found at i:104269309 original size:17 final size:17
Alignment explanation
Indices: 104269255--104269309 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
104269245 TTTGAAGACT
*
104269255 TTTATTTATTATTTTTAC
1 TTTATTTA-TCTTTTTAC
*
104269273 TTT-TTTTTAC-TTTTATC
1 TTTATTTAT-CTTTTTA-C
104269290 TTTATTTATCTTTTTAC
1 TTTATTTATCTTTTTAC
104269307 TTT
1 TTT
104269310 TTATTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 9
0.71 0.07 0.21
Matches are distributed among these distances:
16 6 0.20
17 12 0.40
18 12 0.40
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTATTTATCTTTTTAC
Found at i:104269316 original size:6 final size:6
Alignment explanation
Indices: 104269254--104269317 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
104269244 TTTTGAAGAC
* * * * *
104269254 TTTTAT TTATTAT TTTTA- CTTT-T TTTTAC TTTTAT CTTTAT TTATCT
1 TTTTAT TT-TTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
104269301 TTTTACT TTTTAT TTTT
1 TTTTA-T TTTTAT TTTT
104269318 TAATACTATT
Statistics
Matches: 44, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
5 6 0.14
6 26 0.59
7 12 0.27
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:104271203 original size:61 final size:60
Alignment explanation
Indices: 104271104--104271231 Score: 220
Period size: 61 Copynumber: 2.1 Consensus size: 60
104271094 GAAATGAACG
*
104271104 CGGCCTGGACTTCCTCACAGGGTAGACCACACACCCGTGTCTATTTAGCAGACTCTAACA
1 CGGCCTAGACTTCCTCACAGGGTAGACCACACACCCGTGTCTATTTAGCAGACTCTAACA
**
104271164 CGGCCTAGACTTCCTCACACGGGTAGACCACATGCCCGTGTCTATTTAGCAGACTCTAACA
1 CGGCCTAGACTTCCTCACA-GGGTAGACCACACACCCGTGTCTATTTAGCAGACTCTAACA
104271225 CGGCCTA
1 CGGCCTA
104271232 AGCCACCCTA
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
60 18 0.28
61 46 0.72
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (60 bp):
CGGCCTAGACTTCCTCACAGGGTAGACCACACACCCGTGTCTATTTAGCAGACTCTAACA
Found at i:104271266 original size:61 final size:61
Alignment explanation
Indices: 104271123--104271247 Score: 180
Period size: 61 Copynumber: 2.0 Consensus size: 61
104271113 CTTCCTCACA
* ** *
104271123 GGGTAGACCACACACCCGTGTCTATTTAGCAGACTCTAACACGGCCTAGACTTCCTCACAC
1 GGGTAGACCACACGCCCGTGTCTATTTAGCAGACTCTAACACGGCCTAGACACCCTCAAAC
* *
104271184 GGGTAGACCACATGCCCGTGTCTATTTAGCAGACTCTAACACGGCCTAAGCCACCCT-AAAC
1 GGGTAGACCACACGCCCGTGTCTATTTAGCAGACTCTAACACGGCCT-AGACACCCTCAAAC
104271245 GGG
1 GGG
104271248 AGTGTCACAC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
61 51 0.89
62 6 0.11
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.20
Consensus pattern (61 bp):
GGGTAGACCACACGCCCGTGTCTATTTAGCAGACTCTAACACGGCCTAGACACCCTCAAAC
Found at i:104284151 original size:28 final size:27
Alignment explanation
Indices: 104284095--104284152 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
104284085 TGATTTTTTA
*
104284095 TGAAAATTGAAATTAGGGATTAAATTG
1 TGAAAATTGAAATTAGGGATTAAAGTG
104284122 TGAAATATTGAAATT-GTGG-TTAAAAGTG
1 TGAAA-ATTGAAATTAG-GGATT-AAAGTG
104284150 TGA
1 TGA
104284153 TTATTTGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.34
Consensus pattern (27 bp):
TGAAAATTGAAATTAGGGATTAAAGTG
Found at i:104284688 original size:42 final size:43
Alignment explanation
Indices: 104284641--104284767 Score: 156
Period size: 42 Copynumber: 3.0 Consensus size: 43
104284631 GGTTACCGAG
104284641 ATGAGATTCGTGTAAC-ACCATATCT-AGTACATTGGCATCGAT
1 ATGAGATTCGTGTAACGACCATATCTGAG-ACATTGGCATCGAT
* *
104284683 ATGAGATTTGTGT-ACGACCATGTCTGAGACATTGGCATCGAT
1 ATGAGATTCGTGTAACGACCATATCTGAGACATTGGCATCGAT
* * *
104284725 ATGAGATTCGTGT-ATGACCATAGCTG-GGCTATTGGCATCGAT
1 ATGAGATTCGTGTAACGACCATATCTGAGAC-ATTGGCATCGAT
104284767 A
1 A
104284768 GGCTATAACA
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 4 0.05
42 69 0.92
43 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
ATGAGATTCGTGTAACGACCATATCTGAGACATTGGCATCGAT
Found at i:104292168 original size:22 final size:21
Alignment explanation
Indices: 104292136--104292176 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
104292126 GAGTCTGTAA
*
104292136 ATATTAATATTTAATATTTACG
1 ATATTAATA-TTAAAATTTACG
*
104292158 ATATTATTATTAAAATTTA
1 ATATTAATATTAAAATTTA
104292177 TTAAAGTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
ATATTAATATTAAAATTTACG
Found at i:104301015 original size:13 final size:13
Alignment explanation
Indices: 104300997--104301022 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104300987 TCCTCCACAT
104300997 GGCTGAGATACAC
1 GGCTGAGATACAC
104301010 GGCTGAGATACAC
1 GGCTGAGATACAC
104301023 AACCATATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (13 bp):
GGCTGAGATACAC
Done.