Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 34 of 425
Found at i:8786567 original size:12 final size:12
Alignment explanation
Indices: 8786550--8786580 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8786540 GAAGCAGGGG
8786550 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
8786562 AGAAAAAGGGAA
1 AGAAAAAGAGAA
8786574 AGAAAAA
1 AGAAAAA
8786581 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:8788823 original size:5 final size:5
Alignment explanation
Indices: 8788813--8788894 Score: 164
Period size: 5 Copynumber: 16.4 Consensus size: 5
8788803 TAAATAAGAT
8788813 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
8788863 TATTA TATTA TATTA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TATTA TATTA TA
8788895 ACTAAACTAA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 77 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:8792179 original size:27 final size:27
Alignment explanation
Indices: 8792145--8792206 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
8792135 AATTTACTAA
*
8792145 TATA-CCCTAAGTATG-AAAATTACCAT
1 TATACCCCTAAG-ATGCAAAATGACCAT
*
8792171 TATACCCCT-AGGTGCAAAATGACCAT
1 TATACCCCTAAGATGCAAAATGACCAT
8792197 TATACCCCTA
1 TATACCCCTA
8792207 GGGTTGATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 2 0.06
26 25 0.81
27 4 0.13
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.27
Consensus pattern (27 bp):
TATACCCCTAAGATGCAAAATGACCAT
Found at i:8792351 original size:28 final size:28
Alignment explanation
Indices: 8792311--8792426 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
8792301 GGAGGAAGCA
*
8792311 TTCTGGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
8792339 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
8792367 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
8792395 ATCTGGTGACTCTGTCA-TAATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
8792421 TTCTGG
1 TTCTGG
8792427 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.06
27 7 0.09
28 66 0.85
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:8794615 original size:57 final size:57
Alignment explanation
Indices: 8794527--8794640 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
8794517 TTGTTGCCTT
8794527 GGTGGAGAAAGCTAAGATAGCGGAGGAGGTAAAGCACACCGAAAAACAGAATCGTGA
1 GGTGGAGAAAGCTAAGATAGCGGAGGAGGTAAAGCACACCGAAAAACAGAATCGTGA
8794584 GGTGGAGAAAGCTAAGATAGCGGAGGAGGTAAAGCACACCGAAAAACAGAATCGTGA
1 GGTGGAGAAAGCTAAGATAGCGGAGGAGGTAAAGCACACCGAAAAACAGAATCGTGA
8794641 AAAGGATCAG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.42, C:0.14, G:0.33, T:0.11
Consensus pattern (57 bp):
GGTGGAGAAAGCTAAGATAGCGGAGGAGGTAAAGCACACCGAAAAACAGAATCGTGA
Found at i:8799222 original size:17 final size:18
Alignment explanation
Indices: 8799195--8799232 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
8799185 ATACTACTTC
8799195 TCTTCTCATCTTTTCTTT
1 TCTTCTCATCTTTTCTTT
*
8799213 TCTT-TCATCTTTTTTTT
1 TCTTCTCATCTTTTCTTT
8799230 TCT
1 TCT
8799233 CCATAGCCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (18 bp):
TCTTCTCATCTTTTCTTT
Found at i:8800347 original size:28 final size:28
Alignment explanation
Indices: 8800310--8800425 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
8800300 AGAGGAAGTG
8800310 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
8800338 TTCTGGTGGCTCTACCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
8800366 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * * *
8800394 ATCTAGTGACTCTGTCACACA-ATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
8800420 TTCTGG
1 TTCTGG
8800426 CAACCATGCT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
26 4 0.05
27 5 0.07
28 66 0.88
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:8801866 original size:47 final size:49
Alignment explanation
Indices: 8801751--8801929 Score: 196
Period size: 47 Copynumber: 3.8 Consensus size: 49
8801741 TGTAACCCGC
* * * *
8801751 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG--GC-GTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
* *
8801797 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTCACAT
* *
8801847 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
8801891 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
8801930 TTCAACCATC
Statistics
Matches: 112, Mismatches: 10, Indels: 19
0.79 0.07 0.13
Matches are distributed among these distances:
43 3 0.03
44 5 0.04
45 1 0.01
46 35 0.31
47 57 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
Found at i:8801919 original size:94 final size:93
Alignment explanation
Indices: 8801759--8801929 Score: 279
Period size: 94 Copynumber: 1.8 Consensus size: 93
8801749 GCCCATAAGT
* * *
8801759 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
8801824 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
8801852 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTCGGAC-GTTCACATCCATAAGTGAACTCGGACTCAACTCA
8801917 ACGAGTTCGGATG
65 ACGAGTTCGGATG
8801930 TTCAACCATC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 27 0.38
94 44 0.62
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8809443 original size:47 final size:49
Alignment explanation
Indices: 8809323--8809500 Score: 205
Period size: 47 Copynumber: 3.8 Consensus size: 49
8809313 TGTAACCCGC
* * *
8809323 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GC--TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
8809368 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTCACAT
* *
8809418 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
8809462 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
8809501 TTCAACCATC
Statistics
Matches: 114, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
43 3 0.03
44 5 0.04
45 36 0.32
46 2 0.02
47 59 0.52
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
Found at i:8809490 original size:94 final size:92
Alignment explanation
Indices: 8809331--8809500 Score: 295
Period size: 94 Copynumber: 1.8 Consensus size: 92
8809321 GCCCATAAGT
* *
8809331 GAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACTTCACATCCATAAGTGAACTCGGACTCAACTCAAC
8809396 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
8809423 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC--TTCACATCCATAAGTGAACTCGGACTCAACTCA
8809488 ACGAGTTCGGATG
64 ACGAGTTCGGATG
8809501 TTCAACCATC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 28 0.38
94 45 0.62
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACTTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8809952 original size:30 final size:30
Alignment explanation
Indices: 8809918--8809977 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
8809908 CCTTAATACG
8809918 AACTTTGGTAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGTAAAATTACAC-TTTTGCCCCTA
* *
8809948 AACTTTTGTATAATTACACTTTTGCCCCTA
1 AACTTTGGTAAAATTACACTTTTGCCCCTA
8809978 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGTAAAATTACACTTTTGCCCCTA
Found at i:8811914 original size:11 final size:11
Alignment explanation
Indices: 8811898--8811924 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8811888 TGAATAGATT
8811898 AAGTATGTTCC
1 AAGTATGTTCC
8811909 AAGTATGTTCC
1 AAGTATGTTCC
8811920 AAGTA
1 AAGTA
8811925 GTAGTAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (11 bp):
AAGTATGTTCC
Found at i:8815719 original size:2 final size:2
Alignment explanation
Indices: 8815712--8815746 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8815702 ACTTTAGTTT
8815712 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8815747 ACTATATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8817196 original size:14 final size:15
Alignment explanation
Indices: 8817168--8817201 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8817158 ATAATGACAC
*
8817168 ATTTATATGTGAAAA
1 ATTTATATGTAAAAA
8817183 ATTT-TATGTAAAAA
1 ATTTATATGTAAAAA
8817197 ATTTA
1 ATTTA
8817202 CTTATTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (15 bp):
ATTTATATGTAAAAA
Found at i:8822978 original size:17 final size:16
Alignment explanation
Indices: 8822954--8822992 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
8822944 TTTATTTATC
8822954 ACTTATAAGTAATATCTT
1 ACTTATAA--AATATCTT
8822972 A-TTATAAAATATCTT
1 ACTTATAAAATATCTT
8822987 ACTTAT
1 ACTTAT
8822993 TTTATATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.45
16 4 0.20
17 6 0.30
18 1 0.05
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (16 bp):
ACTTATAAAATATCTT
Found at i:8824490 original size:2 final size:2
Alignment explanation
Indices: 8824483--8824527 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
8824473 TGCTAGTGAC
8824483 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8824525 GA G
1 GA G
8824528 TGACGGAGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8829375 original size:13 final size:13
Alignment explanation
Indices: 8829357--8829383 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8829347 CTATTGTTTT
8829357 GTTGTTAGTATAA
1 GTTGTTAGTATAA
8829370 GTTGTTAGTATAA
1 GTTGTTAGTATAA
8829383 G
1 G
8829384 AAGATGTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (13 bp):
GTTGTTAGTATAA
Found at i:8839709 original size:12 final size:12
Alignment explanation
Indices: 8839692--8839722 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
8839682 CACCTCCATA
8839692 TCCTCTTAAATT
1 TCCTCTTAAATT
8839704 TCCTCTTAAATT
1 TCCTCTTAAATT
8839716 TCCTCTT
1 TCCTCTT
8839723 TATTCGAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.29, G:0.00, T:0.52
Consensus pattern (12 bp):
TCCTCTTAAATT
Found at i:8842471 original size:16 final size:16
Alignment explanation
Indices: 8842450--8842482 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8842440 GTAGGGAGAG
8842450 AAGTGAAACTTCCTGA
1 AAGTGAAACTTCCTGA
8842466 AAGTGAAACTTCCTGA
1 AAGTGAAACTTCCTGA
8842482 A
1 A
8842483 TGATTAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (16 bp):
AAGTGAAACTTCCTGA
Found at i:8858611 original size:17 final size:17
Alignment explanation
Indices: 8858589--8858627 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8858579 TTTTTCTTAA
8858589 GTTTTTAAGACTCATTC
1 GTTTTTAAGACTCATTC
* *
8858606 GTTTTTAAGATTCATTT
1 GTTTTTAAGACTCATTC
8858623 GTTTT
1 GTTTT
8858628 CCTTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.56
Consensus pattern (17 bp):
GTTTTTAAGACTCATTC
Found at i:8861663 original size:31 final size:31
Alignment explanation
Indices: 8861627--8861699 Score: 146
Period size: 31 Copynumber: 2.4 Consensus size: 31
8861617 CCCAAGCCAT
8861627 ACGGGCGTGTGAGTCCACACGACCTACCTAC
1 ACGGGCGTGTGAGTCCACACGACCTACCTAC
8861658 ACGGGCGTGTGAGTCCACACGACCTACCTAC
1 ACGGGCGTGTGAGTCCACACGACCTACCTAC
8861689 ACGGGCGTGTG
1 ACGGGCGTGTG
8861700 GCACTTCAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.21, C:0.33, G:0.30, T:0.16
Consensus pattern (31 bp):
ACGGGCGTGTGAGTCCACACGACCTACCTAC
Found at i:8868697 original size:48 final size:46
Alignment explanation
Indices: 8868577--8868697 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
8868567 TGATATGTGT
* * *
8868577 GCTAGTATAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAA
* * *
8868623 GCCAGTGTATGACATGTCTGGGACATGCATCGGCCTCGAGATAT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGA-AA
* *
8868671 GCTAGTGTAAGACCTGTCTGAGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
8868698 GCGTCAGCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 33 0.53
47 2 0.03
48 27 0.44
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAAA
Found at i:8868778 original size:49 final size:49
Alignment explanation
Indices: 8868584--8868843 Score: 195
Period size: 49 Copynumber: 5.5 Consensus size: 49
8868574 TGTGCTAGTA
* *
8868584 TAAGACATGTCTGGGACAT-GCATCGGCCA-C-AT-TATGAGAGCCAGTG
1 TAAGACCTGTCTGGGACATGGCATC-GACATCGATATATGAGAGCCAGTG
* * * * * * *
8868630 TATGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAGCTAGTG
1 TAAGACCTGTCTGGGACATGGCATCGACATCGATATATGA-GAGCCAGTG
* * * * * *
8868678 TAAGACCTGTCTGAGACATGGCGTC-AGC-T---TGT-TGTGTGTCAGTG
1 TAAGACCTGTCTGGGACATGGCATCGA-CATCGATATATGAGAGCCAGTG
8868722 TAAGACCTGTCTGGGACATGGCATCGACATCGATATATGAGAGCCAGTG
1 TAAGACCTGTCTGGGACATGGCATCGACATCGATATATGAGAGCCAGTG
* * * * **
8868771 TAAGACCTGTCTGGGACACGACATCTG-CCTCGATATATGAAAGTTAGTG
1 TAAGACCTGTCTGGGACATGGCATC-GACATCGATATATGAGAGCCAGTG
*
8868820 TAAGACCTATCTGGGACATGGCAT
1 TAAGACCTGTCTGGGACATGGCAT
8868844 TGACTTTGAT
Statistics
Matches: 167, Mismatches: 33, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
44 30 0.18
45 5 0.03
46 24 0.14
47 2 0.01
48 29 0.17
49 76 0.46
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (49 bp):
TAAGACCTGTCTGGGACATGGCATCGACATCGATATATGAGAGCCAGTG
Found at i:8868840 original size:142 final size:138
Alignment explanation
Indices: 8868584--8868841 Score: 358
Period size: 142 Copynumber: 1.8 Consensus size: 138
8868574 TGTGCTAGTA
* * *
8868584 TAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTATGACATGTCTGGGACAT
1 TAAGACATGTCTGGGACATGCATCGGACACATTATGAGAGCCAGTGTAAGACATGTCTGGGACAC
*
8868649 GCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTGAGACATGGCGTCAGCTTGTTGTG
66 GCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTATCTGAGACATGGCGTCAGCTTGTTGTG
8868714 TGTCAGTG
131 TGTCAGTG
* *
8868722 TAAGACCTGTCTGGGACATGGCATC-GACATCGATATATGAGAGCCAGTGTAAGACCTGTCTGGG
1 TAAGACATGTCTGGGACAT-GCATCGGACA-C-AT-TATGAGAGCCAGTGTAAGACATGTCTGGG
* * * *
8868786 ACACGACATCTGCCTCGATATATGA-AAGTTAGTGTAAGACCTATCTGGGACATGGC
62 ACACG-CATCGGCCTCGAGATAT-ACAAGCTAGTGTAAGACCTATCTGAGACATGGC
8868842 ATTGACTTTG
Statistics
Matches: 104, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
138 21 0.20
139 6 0.06
140 2 0.02
141 31 0.30
142 43 0.41
143 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (138 bp):
TAAGACATGTCTGGGACATGCATCGGACACATTATGAGAGCCAGTGTAAGACATGTCTGGGACAC
GCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTATCTGAGACATGGCGTCAGCTTGTTGTG
TGTCAGTG
Found at i:8897287 original size:9 final size:9
Alignment explanation
Indices: 8897275--8897417 Score: 135
Period size: 9 Copynumber: 16.0 Consensus size: 9
8897265 TATTTGATAT
*
8897275 CATAATTTA
1 CATAACTTA
8897284 CATAACTTA
1 CATAACTTA
* *
8897293 CAGAACGTA
1 CATAACTTA
8897302 CATAACTTA
1 CATAACTTA
*
8897311 TATAACTTA
1 CATAACTTA
8897320 CATAACTTA
1 CATAACTTA
* *
8897329 TATAACATA
1 CATAACTTA
8897338 CATAACTTA
1 CATAACTTA
*
8897347 TATAACTTA
1 CATAACTTA
* *
8897356 TATAACATA
1 CATAACTTA
8897365 CATAACTTA
1 CATAACTTA
**
8897374 TTTAACTTA
1 CATAACTTA
* *
8897383 TATAATTTA
1 CATAACTTA
* *
8897392 GATAA-ATA
1 CATAACTTA
*
8897400 TATAACTTA
1 CATAACTTA
8897409 CATAACTTA
1 CATAACTTA
8897418 TATGTTTCTA
Statistics
Matches: 109, Mismatches: 24, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
8 6 0.06
9 103 0.94
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:8903755 original size:16 final size:16
Alignment explanation
Indices: 8903734--8903765 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8903724 ACTTGTCTTT
8903734 ACACCTACAAAAATAG
1 ACACCTACAAAAATAG
8903750 ACACCTACAAAAATAG
1 ACACCTACAAAAATAG
8903766 TCATATTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.25, G:0.06, T:0.12
Consensus pattern (16 bp):
ACACCTACAAAAATAG
Found at i:8909504 original size:4 final size:4
Alignment explanation
Indices: 8909495--8909528 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
8909485 TTAACCAAGC
* *
8909495 TATT TATT TATT TGTT TGTT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT TATT TA
8909529 AACGAGTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:8909687 original size:13 final size:13
Alignment explanation
Indices: 8909669--8909694 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8909659 TTATTTAAGT
8909669 AAACTAAATATAA
1 AAACTAAATATAA
8909682 AAACTAAATATAA
1 AAACTAAATATAA
8909695 GAATTAGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (13 bp):
AAACTAAATATAA
Found at i:8909779 original size:28 final size:28
Alignment explanation
Indices: 8909748--8909804 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
8909738 AGAAAAACAC
8909748 ATGCAAAAATAAAGTATGGCATGATCCA
1 ATGCAAAAATAAAGTATGGCATGATCCA
8909776 ATGCAAAAATAAAGTATGGCATGATCCA
1 ATGCAAAAATAAAGTATGGCATGATCCA
8909804 A
1 A
8909805 AATTCCCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (28 bp):
ATGCAAAAATAAAGTATGGCATGATCCA
Found at i:8911316 original size:32 final size:35
Alignment explanation
Indices: 8911280--8911363 Score: 95
Period size: 38 Copynumber: 2.4 Consensus size: 35
8911270 AATAGGGTCC
8911280 TTAAAAGAAACA-A-AT-TATATACATAAATAAAT
1 TTAAAAGAAACATATATATATATACATAAATAAAT
* *
8911312 TTAAAAGAAAATATATATATATATATACATAAATAGAT
1 TTAAAAG--AA-ACATATATATATATACATAAATAAAT
8911350 TTAAAAGAAA-ATAT
1 TTAAAAGAAACATAT
8911364 TTACATAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
32 7 0.16
34 6 0.14
35 3 0.07
36 3 0.07
37 2 0.05
38 23 0.52
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.31
Consensus pattern (35 bp):
TTAAAAGAAACATATATATATATACATAAATAAAT
Found at i:8912380 original size:15 final size:14
Alignment explanation
Indices: 8912346--8912379 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8912336 GCAACAAGAT
*
8912346 AAAAAATTAAAGGA
1 AAAAAATGAAAGGA
*
8912360 GAAAAATGAAAGGA
1 AAAAAATGAAAGGA
8912374 AAAAAA
1 AAAAAA
8912380 AGTAGTCATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.09
Consensus pattern (14 bp):
AAAAAATGAAAGGA
Found at i:8912879 original size:17 final size:18
Alignment explanation
Indices: 8912854--8912888 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8912844 ATTTTTATTA
8912854 TTTTGGTTTTCT-TAATG
1 TTTTGGTTTTCTGTAATG
*
8912871 TTTTTGTTTTCTGTAATG
1 TTTTGGTTTTCTGTAATG
8912889 GGCCCGGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.11, C:0.06, G:0.17, T:0.66
Consensus pattern (18 bp):
TTTTGGTTTTCTGTAATG
Found at i:8914842 original size:35 final size:35
Alignment explanation
Indices: 8914803--8914874 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
8914793 GTCTAGGATC
*
8914803 GCATATCTTTGAAGATCCCCTTCCATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
* * *
8914838 GCATATCTTTGAAGATTACTTTCTATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
8914873 GC
1 GC
8914875 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (35 bp):
GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
Found at i:8923248 original size:35 final size:35
Alignment explanation
Indices: 8923209--8923278 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
8923199 CTAGGATCGT
8923209 ATATCTTTGAAGATCT-CCTTCCATATTTGCCAAGC
1 ATATCTTTGAAGAT-TACCTTCCATATTTGCCAAGC
*
8923244 ATATCTTTGAAGATTACTTTCCATATTTGCCAAGC
1 ATATCTTTGAAGATTACCTTCCATATTTGCCAAGC
8923279 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
34 1 0.03
35 32 0.97
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (35 bp):
ATATCTTTGAAGATTACCTTCCATATTTGCCAAGC
Found at i:8925097 original size:20 final size:18
Alignment explanation
Indices: 8925049--8925102 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 18
8925039 AAAAATAAAT
*
8925049 AAAATAAAAATATATTTG
1 AAAATAAAAATAAATTTG
8925067 AAAATACAAAAATAAATTTAAG
1 AAAAT--AAAAATAAATTT--G
8925089 AAAAT-AAAATAAAT
1 AAAATAAAAATAAAT
8925103 GAATAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 5 0.16
19 9 0.29
20 11 0.35
22 6 0.19
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.26
Consensus pattern (18 bp):
AAAATAAAAATAAATTTG
Found at i:8927324 original size:25 final size:25
Alignment explanation
Indices: 8927276--8927326 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
8927266 TGCAGAAAAA
* ** *
8927276 ACTAAACCCTACAACTATGGAGAAG
1 ACTAAACCCTAAAAAGATGAAGAAG
8927301 ACTAAACCCTAAAAAGATGAAGAAG
1 ACTAAACCCTAAAAAGATGAAGAAG
8927326 A
1 A
8927327 AACTAAGAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.51, C:0.20, G:0.16, T:0.14
Consensus pattern (25 bp):
ACTAAACCCTAAAAAGATGAAGAAG
Found at i:8928745 original size:30 final size:30
Alignment explanation
Indices: 8928688--8928786 Score: 166
Period size: 30 Copynumber: 3.3 Consensus size: 30
8928678 TATACTAGGC
*
8928688 CGTGTCCTTCACACGGCT-A-AGACACAGT
1 CGTGTCCTTCACACGGCTGAGACACACAGT
8928716 CGTGTCCTTCACACGGCTGAGACACACAGT
1 CGTGTCCTTCACACGGCTGAGACACACAGT
8928746 CGTGTCCTTCACACGGCTGAGACACACAGT
1 CGTGTCCTTCACACGGCTGAGACACACAGT
8928776 CGTGTCTCTTC
1 CGTGTC-CTTC
8928787 CCGTGTGTTT
Statistics
Matches: 67, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
28 18 0.27
29 1 0.01
30 44 0.66
31 4 0.06
ACGTcount: A:0.21, C:0.33, G:0.22, T:0.23
Consensus pattern (30 bp):
CGTGTCCTTCACACGGCTGAGACACACAGT
Found at i:8929798 original size:46 final size:47
Alignment explanation
Indices: 8929601--8929867 Score: 228
Period size: 46 Copynumber: 5.6 Consensus size: 47
8929591 GTAAGTTGTC
* * *
8929601 GATGCCATATCCCAGACATAGTCTTACACTGGCTATCATCACCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-ATC-TCGAGGCT
* * * * *
8929650 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAATCG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCT-ATAT-CTCGAGGCT
* * *
8929700 GATGTCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-GCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATATCTCG-AGGCT
*
8929746 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TATATCTCGAGGCT
* * * *
8929792 GATG-CATGTCCCAGACAT-ATCTTACACTAGC-ACTATTCTCAATG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TA-TCTCGAGGCT
8929837 CGATGCCATGTCCCAGACATGGTCTTACACT
1 -GATGCCATGTCCCAGACATGGTCTTACACT
8929868 AGCTCTCATA
Statistics
Matches: 183, Mismatches: 21, Indels: 29
0.79 0.09 0.12
Matches are distributed among these distances:
44 13 0.07
45 20 0.11
46 58 0.32
47 14 0.08
48 10 0.05
49 29 0.16
50 32 0.17
51 6 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATATCTCGAGGCT
Found at i:8929890 original size:94 final size:93
Alignment explanation
Indices: 8929647--8929915 Score: 295
Period size: 94 Copynumber: 2.9 Consensus size: 93
8929637 CATCACCGAG
8929647 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAATCGT-GCCGATGTCATGTC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATAAT-GTGGCCGATG-CATGTC
*
8929711 CCAGACATGGTCTTACACT-GACACATCTCGTA
62 CCAGACAT-GTCTTACACTAGACACATCTCATA
* ** * *
8929743 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ATGTCTCGAGGCTGATGCATGTCCC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-AAT-GTGGCCGATGCATGTCCC
*
8929804 AGACATATCTTACACTAG-CACTATTCTCA-A
64 AGACATGTCTTACACTAGACAC-A-TCTCATA
*
8929834 TG-TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGTCGATGCATGTCCC
1 -GCT-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCC
*
8929898 AGACATGTCTTGCACTAG
64 AGACATGTCTTACACTAG
8929916 TCCACAATAA
Statistics
Matches: 147, Mismatches: 15, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
90 14 0.10
91 21 0.14
92 15 0.10
93 15 0.10
94 57 0.39
95 16 0.11
96 9 0.06
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGACACATCTCATA
Found at i:8929903 original size:140 final size:142
Alignment explanation
Indices: 8929598--8929913 Score: 364
Period size: 140 Copynumber: 2.2 Consensus size: 142
8929588 CGGGTAAGTT
*
8929598 GTCGATGCCATATCCCAGACATAGTCTTACACTGGCTATCATCACCGAGGCTGATGCCATGTCCC
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCACCGAGGCTGATGCCATGTCCC
* * *
8929663 AGACATGGTCTTACACTAGCTCTCACATAATCGTGCCGATGTCATGTCCCAGACATGGTCTTACA
64 AGACATGATCTTACACTAGCACTCACATAATCGT-CCGATGCCATGTCCCAGACATGGTCTTACA
*
8929728 CTGACACATCTCGTA
128 CTGACACATATCGTA
* *
8929743 G-CTGATGCATGTCCCAGACATGTCTTACACTGGCTTAT-GTC-TCGAGGCTGATG-CATGTCCC
1 GTC-GATGCATGTCCCAGACATGTCTTACACTGGC-TATCATCACCGAGGCTGATGCCATGTCCC
8929804 AGACAT-ATCTTACACTAGCACT-ATTC-TCAAT-GT-CGATGCCATGTCCCAGACATGGTCTTA
64 AGACATGATCTTACACTAGCACTCA--CAT-AATCGTCCGATGCCATGTCCCAGACATGGTCTTA
* * *
8929864 CACTAGCTCTCATAAT-GTG
126 CACT-G-ACACAT-ATCGTA
*
8929883 GTCGATGCATGTCCCAGACATGTCTTGCACT
1 GTCGATGCATGTCCCAGACATGTCTTACACT
8929914 AGTCCACAAT
Statistics
Matches: 151, Mismatches: 11, Indels: 23
0.82 0.06 0.12
Matches are distributed among these distances:
138 30 0.20
139 2 0.01
140 51 0.34
141 20 0.13
142 11 0.07
143 15 0.10
144 17 0.11
145 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (142 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCACCGAGGCTGATGCCATGTCCCAG
ACATGATCTTACACTAGCACTCACATAATCGTCCGATGCCATGTCCCAGACATGGTCTTACACTG
ACACATATCGTA
Found at i:8932321 original size:52 final size:52
Alignment explanation
Indices: 8932238--8932340 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
8932228 TCAATGCAAG
* *
8932238 TACTCTGGAATAGGGAACTAATTAATGAATTTAGGCCAATAAGAGGTATTAA
1 TACTCTGGAATAGGGAACTAAGTAATAAATTTAGGCCAATAAGAGGTATTAA
*
8932290 TACTCTGGAGTAGGGAACTAAGTAATAAATTTAGGCCAATAAGAGGTATTA
1 TACTCTGGAATAGGGAACTAAGTAATAAATTTAGGCCAATAAGAGGTATTA
8932341 GGAAAGGAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (52 bp):
TACTCTGGAATAGGGAACTAAGTAATAAATTTAGGCCAATAAGAGGTATTAA
Found at i:8936822 original size:18 final size:18
Alignment explanation
Indices: 8936799--8936833 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8936789 TAATAAATAA
* *
8936799 ATATTTTAAAATTTTTAT
1 ATATTTAAAAAATTTTAT
8936817 ATATTTAAAAAATTTTA
1 ATATTTAAAAAATTTTA
8936834 CAGCCACTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATATTTAAAAAATTTTAT
Found at i:8937057 original size:29 final size:30
Alignment explanation
Indices: 8937024--8937111 Score: 83
Period size: 29 Copynumber: 2.9 Consensus size: 30
8937014 TAACCTTATA
* *
8937024 AAAATATTCAAATGA-GGATCAAACATTTC-
1 AAAATAGTCAAATGAGGGCT-AAACATTTCT
*
8937053 AAAATGGTCAAATGAGGGCTAAACATTTCT
1 AAAATAGTCAAATGAGGGCTAAACATTTCT
* *
8937083 AAAAGT-GCTCAAATAAGGGTTAAACATTT
1 AAAA-TAG-TCAAATGAGGGCTAAACATTT
8937112 TTTAAAGTGC
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
29 22 0.44
30 8 0.16
31 20 0.40
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.27
Consensus pattern (30 bp):
AAAATAGTCAAATGAGGGCTAAACATTTCT
Found at i:8937107 original size:31 final size:31
Alignment explanation
Indices: 8937044--8937129 Score: 113
Period size: 31 Copynumber: 2.8 Consensus size: 31
8937034 AATGAGGATC
* *
8937044 AAACATTTC-AAAA-TGGTCAAATGAGGGCT
1 AAACATTTCTAAAAGTGCTCAAATAAGGGCT
*
8937073 AAACATTTCTAAAAGTGCTCAAATAAGGGTT
1 AAACATTTCTAAAAGTGCTCAAATAAGGGCT
* *
8937104 AAACATTTTTTAAAGTGCTCAAATAA
1 AAACATTTCTAAAAGTGCTCAAATAA
8937130 AGACTTCTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
29 9 0.18
30 4 0.08
31 37 0.74
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (31 bp):
AAACATTTCTAAAAGTGCTCAAATAAGGGCT
Found at i:8938819 original size:43 final size:42
Alignment explanation
Indices: 8938753--8938865 Score: 112
Period size: 39 Copynumber: 2.8 Consensus size: 42
8938743 ACATTTTCAC
* * *
8938753 TAAGATAAATTAAAACATCTTCACCAAA-AGAAAGAACAGTA-AA
1 TAAGATAATTTTAAACATATTCACCAAATA-AAA-AACA-TATAA
* *
8938796 TAAGATAATTTTAAACATTTTCA-CAAATAAAAAATATATAA
1 TAAGATAATTTTAAACATATTCACCAAATAAAAAACATATAA
8938837 -AA-ATAATTTTAAACATATTCACC-AATAAA
1 TAAGATAATTTTAAACATATTCACCAAATAAA
8938866 TAAAAGCAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
39 24 0.39
40 5 0.08
41 5 0.08
42 7 0.11
43 21 0.34
ACGTcount: A:0.57, C:0.12, G:0.04, T:0.27
Consensus pattern (42 bp):
TAAGATAATTTTAAACATATTCACCAAATAAAAAACATATAA
Found at i:8939825 original size:7 final size:7
Alignment explanation
Indices: 8939792--8939826 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
8939782 CTATTAATAT
*
8939792 TATTTGA
1 TATTTTA
*
8939799 TATTTGA
1 TATTTTA
8939806 TATTTTA
1 TATTTTA
8939813 TATTTTA
1 TATTTTA
8939820 TATTTTA
1 TATTTTA
8939827 AATTAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (7 bp):
TATTTTA
Found at i:8939953 original size:16 final size:15
Alignment explanation
Indices: 8939932--8939990 Score: 65
Period size: 13 Copynumber: 4.1 Consensus size: 15
8939922 TTTATTTTTT
8939932 ATTATTATTCTAATAA
1 ATTATTATT-TAATAA
8939948 ATTATTATTT-A-AA
1 ATTATTATTTAATAA
8939961 ATT-TTATTATAATAA
1 ATTATTATT-TAATAA
8939976 A--ATTATTTAATAA
1 ATTATTATTTAATAA
8939989 AT
1 AT
8939991 AAATATACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 5 0.13
13 13 0.34
14 7 0.18
15 4 0.11
16 9 0.24
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTATTATTTAATAA
Found at i:8939990 original size:28 final size:27
Alignment explanation
Indices: 8939883--8939985 Score: 79
Period size: 28 Copynumber: 3.9 Consensus size: 27
8939873 ATATTTTTTA
* * *
8939883 TTATTTTAATAAAATGTTATTCAAAATT
1 TTATTATAAT-AAATATTATTTAAAATT
* ***
8939911 TCATTA-AAT-AAT-TTATTTTTTATT
1 TTATTATAATAAATATTATTTAAAATT
*
8939935 ATTATTCTAATAAATTATTATTTAAAATT
1 -TTATTATAATAAA-TATTATTTAAAATT
8939964 TTATTATAATAAA-ATTATTTAA
1 TTATTATAATAAATATTATTTAA
8939986 TAAATAAATA
Statistics
Matches: 58, Mismatches: 12, Indels: 12
0.71 0.15 0.15
Matches are distributed among these distances:
24 8 0.14
25 7 0.12
26 12 0.21
27 5 0.09
28 17 0.29
29 9 0.16
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (27 bp):
TTATTATAATAAATATTATTTAAAATT
Found at i:8941543 original size:29 final size:30
Alignment explanation
Indices: 8941492--8941571 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
8941482 GTACGAATTC
* * *
8941492 AATTAATTTTAATTATATTTTTAA-AAATAT
1 AATTATTTTTAATTA-ATATTTAATAAAGAT
*
8941522 AATTATTTTTATTTAATATTTAATAAAGAT
1 AATTATTTTTAATTAATATTTAATAAAGAT
*
8941552 -ATATATTTTAAATTAATATT
1 AAT-TATTTTTAATTAATATT
8941572 GATTTGAATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 9 0.21
30 33 0.79
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (30 bp):
AATTATTTTTAATTAATATTTAATAAAGAT
Found at i:8941705 original size:31 final size:31
Alignment explanation
Indices: 8941649--8941707 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
8941639 ATATTGTATT
**
8941649 AAAAAATTCTTTTAAATTATGTTTTAAAAAG
1 AAAAAATTCTTTTAAATTAAATTTTAAAAAG
8941680 AAAAAA-TCTTTTAAATTAAAATTTTAAA
1 AAAAAATTCTTTTAAATT-AAATTTTAAA
8941708 CATAATCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (31 bp):
AAAAAATTCTTTTAAATTAAATTTTAAAAAG
Found at i:8945172 original size:11 final size:13
Alignment explanation
Indices: 8945146--8945177 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
8945136 TTTGCATATT
8945146 CATTCATGTCTGA
1 CATTCATGTCTGA
8945159 CATTCAT-T-TGA
1 CATTCATGTCTGA
8945170 CATTCATG
1 CATTCATG
8945178 CATTCATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.56
12 1 0.06
13 7 0.39
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.41
Consensus pattern (13 bp):
CATTCATGTCTGA
Found at i:8953631 original size:68 final size:70
Alignment explanation
Indices: 8953458--8953631 Score: 235
Period size: 71 Copynumber: 2.5 Consensus size: 70
8953448 TTTTCAAGGG
* * *
8953458 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
8953523 TTTTCA
66 TTTT-A
* ** * *
8953529 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTA-TTTTAGTTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
8953593 TTTT-
66 TTTTA
* *
8953597 AAATTAACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
8953632 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
68 32 0.35
70 14 0.15
71 46 0.50
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (70 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTTA
Found at i:8953756 original size:72 final size:70
Alignment explanation
Indices: 8953631--8953795 Score: 224
Period size: 72 Copynumber: 2.3 Consensus size: 70
8953621 GAGTTAAGCC
** * *
8953631 TTTT-AATTTTTGTTTTTCAAAATCAACTCATTTGCTAGAGGTGAGTTGAGCCTCGGGGCACACT
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATTTGCGAGAGGTGAGTTGAGCCTCAGGGCACACT
8953695 GAGGTA
65 GAGGTA
* *
8953701 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCAT-TTGCGAGAGGTGAGTTGAGCCTCAGGGCACAC
8953766 TGAGGTA
64 TGAGGTA
* *
8953773 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
8953796 ACGTTGTTCA
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
70 4 0.05
71 28 0.33
72 52 0.62
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (70 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATTTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTG
AGGTA
Found at i:8953898 original size:140 final size:140
Alignment explanation
Indices: 8953728--8954495 Score: 1419
Period size: 140 Copynumber: 5.5 Consensus size: 140
8953718 TTAATTTCAA
8953728 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
8953793 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
*
8953858 TCAAAATTAG
131 TCAAAATCAG
8953868 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
8953933 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8953998 TCAAAATCAG
131 TCAAAATCAG
* * *
8954008 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTAAAGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
8954073 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8954138 TCAAAATCAG
131 TCAAAATCAG
*
8954148 CTCATATTGCGAAAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
8954213 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8954278 TCAAAATCAG
131 TCAAAATCAG
8954288 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
8954353 TTTATGTTGTTCAAGAATCAACTCATATTGCGATAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8954418 TCAAAATCAG
131 TCAAAATCAG
*
8954428 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC--GCTGAGGTATTTTCAATTTCTGT-TTT
8954493 CAA
63 CAA
8954496 AAAAAAAATT
Statistics
Matches: 611, Mismatches: 14, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
140 582 0.95
142 23 0.04
143 6 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:8954351 original size:13 final size:13
Alignment explanation
Indices: 8954333--8954366 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
8954323 CGCTGAGGTA
*
8954333 TTTTCAATTTCTG
1 TTTTCAATTTATG
8954346 TTTTCAATTTATG
1 TTTTCAATTTATG
8954359 TTGTTCAA
1 TT-TTCAA
8954367 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:8954612 original size:71 final size:72
Alignment explanation
Indices: 8954415--8954639 Score: 285
Period size: 71 Copynumber: 3.0 Consensus size: 72
8954405 AATTTCTACT
* ** * * *
8954415 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-AGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATT
8954478 TCAATTTCTG
63 TCAATTTCTG
8954488 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA-ACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
8954552 AATTTCAATTTCTG
59 AATTTCAATTTCTG
8954566 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
8954631 ATTTCTG
66 ATTTCTG
8954638 TT
1 TT
8954640 CAAAATGAGT
Statistics
Matches: 136, Mismatches: 6, Indels: 21
0.83 0.04 0.13
Matches are distributed among these distances:
71 42 0.31
72 26 0.19
73 1 0.01
74 4 0.03
77 4 0.03
78 22 0.16
79 1 0.01
80 4 0.03
81 30 0.22
82 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:8954650 original size:49 final size:49
Alignment explanation
Indices: 8954593--8954688 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
8954583 ATATTGCGAG
*
8954593 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
*
8954642 AAATGAGTTGAGCCTGAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
8954689 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:8954760 original size:121 final size:120
Alignment explanation
Indices: 8954522--8954760 Score: 406
Period size: 121 Copynumber: 2.0 Consensus size: 120
8954512 ATATTGCGAG
*
8954522 AAATGAGTTGAGCCTCAAGAACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATAT
1 AAATGAGTTGAGCCTCAAGAACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATAT
* *
8954587 TGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
*
8954642 AAATGAGTTGAGCCTGAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGA-ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
8954707 TTACGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
65 TTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
8954761 TTTAAAAAAA
Statistics
Matches: 111, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
120 19 0.17
121 92 0.83
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (120 bp):
AAATGAGTTGAGCCTCAAGAACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATAT
TACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:8954813 original size:76 final size:74
Alignment explanation
Indices: 8954642--8954991 Score: 415
Period size: 76 Copynumber: 4.7 Consensus size: 74
8954632 TTTCTGTTCA
* * * *
8954642 AAATGAGTTGAGCCTGAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
8954704 ATATTACG-AG
66 ATATT--GTAG
* * *
8954714 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAAAATCAAC
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTT--CAAAAAAATCAAC
8954779 TCATATTGTAG
64 TCATATTGTAG
*
8954790 AAATAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-C
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
*
8954854 ATATTGCAG
66 ATATTGTAG
** * * *
8954863 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTTTCAAAAAAATCAACTC
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
8954927 ATATTGTGAG
66 ATATTGT-AG
*** * * *
8954937 AGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATAAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
8954992 TTTCTGCCTT
Statistics
Matches: 246, Mismatches: 21, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
72 58 0.24
73 59 0.24
74 31 0.13
75 1 0.00
76 74 0.30
77 23 0.09
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (74 bp):
AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGTAG
Found at i:8954917 original size:149 final size:149
Alignment explanation
Indices: 8954642--8954991 Score: 442
Period size: 149 Copynumber: 2.4 Consensus size: 149
8954632 TTTCTGTTCA
* * * *
8954642 AAATGAGTTGAGCCTGAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* * * *
8954704 ATATTACGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTAAAAA
66 ATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTT--CAA
8954769 AAAAATCAACTCATATTGT-AG
128 AAAAATCAACTCATATTGTGAG
*
8954790 AAATAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-C
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* ** *
8954854 ATATTGC-AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
66 ATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
8954918 AATCAACTCATATTGTGAG
131 AATCAACTCATATTGTGAG
*** * * *
8954937 AGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATAAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
8954992 TTTCTGCCTT
Statistics
Matches: 176, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
146 21 0.12
147 17 0.10
148 45 0.26
149 77 0.44
150 7 0.04
151 9 0.05
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (149 bp):
AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTACGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
AATCAACTCATATTGTGAG
Found at i:8955053 original size:93 final size:93
Alignment explanation
Indices: 8954913--8955084 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
8954903 TTCTGTTTTC
* *
8954913 AAAAAAATCAACTCATATTGTGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
8954978 TTTCCGTTTTTCAATTTCTGCCTTTAAA
66 TTTCCGTCTTTCAATTTCTGCCTTTAAA
** * *
8955006 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
*
8955070 ATTTCTGTCTTTCAA
65 ATTTCCGTCTTTCAA
8955085 AAAAATCAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTAAA
Found at i:8955101 original size:170 final size:165
Alignment explanation
Indices: 8954841--8955144 Score: 448
Period size: 170 Copynumber: 1.8 Consensus size: 165
8954831 TCTGTTTTTC
*
8954841 AAAAAAATCAACCATATTGCAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAAAATCAACCATATTGCAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTTC
* * * *
8954906 TGTTTTCAAAAAAATCAACTCATATTGTGAGAGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTA
66 TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGCAAGTTAAGCCTCAGATCACACACCGAGGTA
8954971 TTTTCAATTTCCGTTTTTCAATTTCTGCCTTTAAA
131 TTTTCAATTTCCGTTTTTCAATTTCTGCCTTTAAA
* *
8955006 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGCTATTTTCA
1 AAAAAAATCAAC-CATATTGC-AGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTTCA
** * *
8955070 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCTTCAGATCACACACT
61 ATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGCAAGTTAAGCCTCAGATCACACACC
8955135 GAGGTATTTT
125 GAGGTATTTT
8955145 TTCAATTTAT
Statistics
Matches: 122, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
165 12 0.10
166 10 0.08
167 17 0.14
169 25 0.20
170 58 0.48
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (165 bp):
AAAAAAATCAACCATATTGCAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTTC
TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGCAAGTTAAGCCTCAGATCACACACCGAGGTA
TTTTCAATTTCCGTTTTTCAATTTCTGCCTTTAAA
Found at i:8955114 original size:77 final size:78
Alignment explanation
Indices: 8954984--8955359 Score: 325
Period size: 77 Copynumber: 4.7 Consensus size: 78
8954974 TCAATTTCCG
*
8954984 TTTTTCAATTTCTGCCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
1 TTTTTCAATTTCTGTCTTT--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
8955049 TCACACGCTGAGCTA
64 TCACACGCTGAGCTA
* * * *
8955064 -TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAG-CTTCAGAT
1 TTTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCT
* *
8955127 CACACACTGAGGTA
65 CACACGCTGAGCTA
* * * * * * *
8955141 TTTTTTCAATTTATAT-TTTTAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 -TTTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
8955205 CACATG-TCGAGGTA
65 CACACGCT-GAGCTA
* * *** * *
8955219 TTTTTAAAATATGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGA
1 TTTTT--CA-A----TTTCTG--TCT-TTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
**
8955284 GCCTTGGCTCACGTGCTGAGCTA
56 GCCTTGGCTCACACGCTGAGCTA
*
8955307 -TTTTCAATTT-T-TTTTTAAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTTCAATTTCTGTCTTTAAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGA
8955360 ACTTTTTAAT
Statistics
Matches: 239, Mismatches: 39, Indels: 40
0.75 0.12 0.13
Matches are distributed among these distances:
75 7 0.03
76 31 0.13
77 55 0.23
78 48 0.20
79 32 0.13
80 4 0.02
84 4 0.02
85 1 0.00
86 1 0.00
87 5 0.02
88 50 0.21
89 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (78 bp):
TTTTTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
ACACGCTGAGCTA
Found at i:8955312 original size:243 final size:240
Alignment explanation
Indices: 8954812--8955572 Score: 828
Period size: 248 Copynumber: 3.1 Consensus size: 240
8954802 CCTCAAGACA
* *
8954812 TGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-CATATTGC-AGAGGTGAGTTGAG
1 TGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAG
* * * * * * *
8954875 CCTCAG--GACACGCTGAGGTA-ATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGTGAG
66 CTTCAGATCACACACTGAGGTATTTTTCAATTTCTATTTTTAAAAAAATCAACTCATATTGCGAG
** * * ** *
8954937 AGGCAAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTT
131 AGGTGAGTTGAGCCTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAA-TTCTG--TT
** *
8955002 TAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACA
192 T---TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* *
8955054 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAG
1 TGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAG
* *
8955119 CTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTAAAAAAATCAACTCACATTGCGA
66 CTTCAGATCACACACTGAGGTA-TTTTTCAATTTCTATTTTTAAAAAAATCAACTCATATTGCGA
* * *
8955184 GATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTTAAAATATGTTTTTCAGATTCTGTTT
130 GAGGTGAGTTGAGCCTC-GGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCA-ATTCTGTTT
* *
8955249 TCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACG
193 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
*
8955297 TGCTGAGCTATTTTCAATTT-T-TTTTTAAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
1 TGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTT-A
* * * * * *
8955360 A-CTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTATTTTT-CAAAAATCAAC
64 AGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-T-TTTTCAATTTCTATTTTTAAAAAAATCAAC
* * * *
8955421 TCATATTGCGAGAGGTGAGTTGAACCTTCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTC
119 TCATATTGCGAGAGGTGAGTTGAGCC-TCGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC
*
8955486 AA-GCTAAG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
183 AATTCT--GTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
*
8955545 TGCTGAGCTATTTTCAATTTCTATTTTT
1 TGCTGAGCTATTTTCAATTTCTGTTTTT
8955573 AATGTCTGTT
Statistics
Matches: 444, Mismatches: 51, Indels: 40
0.83 0.10 0.07
Matches are distributed among these distances:
241 11 0.02
242 66 0.15
243 73 0.16
244 21 0.05
245 2 0.00
246 18 0.04
247 7 0.02
248 219 0.49
249 18 0.04
250 9 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (240 bp):
TGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAG
CTTCAGATCACACACTGAGGTATTTTTCAATTTCTATTTTTAAAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAATTCTGTTTTCA
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
Found at i:8955379 original size:30 final size:30
Alignment explanation
Indices: 8955343--8955403 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
8955333 CAACTCATAT
8955343 TGCGAGAGGTGAGTTGAACT-TTTTAATTTC
1 TGCGAGAGGTGAGTTG-ACTCTTTTAATTTC
* *
8955373 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGACTCTTTTAATTTC
8955403 T
1 T
8955404 ATTTTTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.21, C:0.10, G:0.26, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGACTCTTTTAATTTC
Found at i:8958225 original size:31 final size:32
Alignment explanation
Indices: 8958190--8958250 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
8958180 AAAAAAACTT
*
8958190 AATAATCCAATGACTTAAAT-AAAATTTTTTG
1 AATAATCCAATGACTTAAATGAAAAATTTTTG
* *
8958221 AATAATTCAATGATTTAAATGAAAAATTTT
1 AATAATCCAATGACTTAAATGAAAAATTTT
8958251 CAAAAAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 18 0.69
32 8 0.31
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (32 bp):
AATAATCCAATGACTTAAATGAAAAATTTTTG
Found at i:8958986 original size:18 final size:20
Alignment explanation
Indices: 8958944--8958985 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
8958934 ATATAATTTT
8958944 AAAATATATATAATACATCA
1 AAAATATATATAATACATCA
*
8958964 AAAATATTTATAA-ACATCA
1 AAAATATATATAATACATCA
8958983 AAA
1 AAA
8958986 TTGAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATATATATAATACATCA
Found at i:8959979 original size:30 final size:31
Alignment explanation
Indices: 8959945--8960012 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
8959935 AAGTTAAGAC
* *
8959945 TAAAATTCA-AAATTTGAAAAAATACAAA-AT
1 TAAAATTCAGAAA-TTCAAAAAATAAAAATAT
* *
8959975 TAAAATTGAGACATTCAAAAAATAAAAATAT
1 TAAAATTCAGAAATTCAAAAAATAAAAATAT
8960006 TAAAATT
1 TAAAATT
8960013 GATCAAATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 21 0.66
31 11 0.34
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (31 bp):
TAAAATTCAGAAATTCAAAAAATAAAAATAT
Found at i:8962295 original size:36 final size:36
Alignment explanation
Indices: 8962248--8962320 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
8962238 TTTCCATCAG
8962248 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
1 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
8962284 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
1 TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
8962320 T
1 T
8962321 ATTTTTGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (36 bp):
TGTAATGATATTTACCAATGTTGAAAAACAGGAAAC
Found at i:8966131 original size:42 final size:42
Alignment explanation
Indices: 8966072--8966160 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
8966062 ATATGATTCC
*
8966072 TTTTTTGTTTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCA
1 TTTTTTGTCTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCA
*
8966114 TTTTTTGTCTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCC
1 TTTTTTGTCTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCA
8966156 TTTTT
1 TTTTT
8966161 GGTTTTTTCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.12, C:0.20, G:0.18, T:0.49
Consensus pattern (42 bp):
TTTTTTGTCTGAACCTGGATGTTGCTTTCCCAAGTTGCTTCA
Found at i:8968031 original size:71 final size:69
Alignment explanation
Indices: 8967933--8968106 Score: 217
Period size: 71 Copynumber: 2.5 Consensus size: 69
8967923 TTTTCAAGGG
* * *
8967933 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATTAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
8967997 GTTTT
65 GTTTT
** * *
8968002 CAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
8968067 TGTTTT
64 TGTTTT
* * *
8968073 AAATTGACTCA-ATTGCGAGAGGTGAGTTAAGCCT
1 AAATTAACTCATATTGCGAGAAGTGAGTTGAGCCT
8968107 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
68 21 0.23
69 10 0.11
71 59 0.64
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (69 bp):
AAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:8968230 original size:71 final size:70
Alignment explanation
Indices: 8968106--8968269 Score: 224
Period size: 71 Copynumber: 2.3 Consensus size: 70
8968096 GAGTTAAGCC
** * *
8968106 TTTT-AATTTTTGTTTTTCAAAATCAACTCATTTGCTAGAGGTGAGTTGAGCCTCGGGGCAC-CT
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATTTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
8968169 GAGGTA
65 GAGGTA
*
8968175 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCAT-TTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
8968240 TGAGGTA
64 TGAGGTA
* *
8968247 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
8968270 ACGTTGTTCA
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
69 4 0.05
70 20 0.24
71 39 0.46
72 21 0.25
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (70 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATTTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTG
AGGTA
Found at i:8968702 original size:279 final size:280
Alignment explanation
Indices: 8968202--8968964 Score: 1421
Period size: 279 Copynumber: 2.7 Consensus size: 280
8968192 TTAATTTCAA
8968202 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
8968267 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8968332 TCAAAAT-AGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
*
8968396 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
8968461 TTCTACTTTTTCAAAATCAG
261 TTCTACTTTTTCAAAATCAG
*
8968481 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC-CTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
8968545 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8968610 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
8968675 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
196 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
8968740 TTCTACTTTTTCAAAATCAG
261 TTCTACTTTTTCAAAATCAG
8968760 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
8968825 TTTA-GTTGTTCAAGAATCAACTCATATTG-GA-AGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8968887 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAA
131 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAA
8968951 TTTCTGTCTTTCAA
193 TTTCTGT-TTTCAA
8968965 AAAAAAAATT
Statistics
Matches: 473, Mismatches: 5, Indels: 11
0.97 0.01 0.02
Matches are distributed among these distances:
276 2 0.00
277 73 0.15
278 100 0.21
279 261 0.55
280 37 0.08
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (280 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
TTCTACTTTTTCAAAATCAG
Found at i:8968734 original size:140 final size:140
Alignment explanation
Indices: 8968202--8968964 Score: 1421
Period size: 139 Copynumber: 5.5 Consensus size: 140
8968192 TTAATTTCAA
8968202 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
8968267 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8968332 TCAAAAT-AG
131 TCAAAATCAG
8968341 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
8968406 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8968471 TCAAAATCAG
131 TCAAAATCAG
*
8968481 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC-CTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
8968545 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8968610 TCAAAATCAG
131 TCAAAATCAG
8968620 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
8968685 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8968750 TCAAAATCAG
131 TCAAAATCAG
8968760 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
8968825 TTTA-GTTGTTCAAGAATCAACTCATATTG-GA-AGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
8968887 TCAAAATCAG
131 TCAAAATCAG
8968897 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
8968961 TCAA
62 TCAA
8968965 AAAAAAAATT
Statistics
Matches: 614, Mismatches: 4, Indels: 11
0.98 0.01 0.02
Matches are distributed among these distances:
136 2 0.00
137 73 0.12
138 2 0.00
139 322 0.52
140 215 0.35
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:8969081 original size:71 final size:71
Alignment explanation
Indices: 8968884--8969108 Score: 265
Period size: 71 Copynumber: 3.0 Consensus size: 71
8968874 AATTTCTACT
* ** * * *
8968884 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--AACAT--TGAGGTAATT
8968947 TCAATTTCTG
62 TCAATTTCTG
8968957 TCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAACATTGAGGTA
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAACATTGAGGTA
8969022 ATTTCAATTTCTG
59 ATTTCAATTTCTG
*
8969035 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA-ACATTGAGGTAATTTCA
8969100 ATTTCTG
65 ATTTCTG
8969107 TT
1 TT
8969109 CAAAATGAGT
Statistics
Matches: 135, Mismatches: 7, Indels: 21
0.83 0.04 0.13
Matches are distributed among these distances:
71 42 0.31
72 25 0.19
73 1 0.01
74 4 0.03
77 4 0.03
78 20 0.15
80 8 0.06
81 30 0.22
82 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (71 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAACATTGAGGTAATTTCAA
TTTCTG
Found at i:8969141 original size:48 final size:49
Alignment explanation
Indices: 8969062--8969156 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 49
8969052 ATATTGCGAG
*
8969062 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
8969111 AAATGAGTTGAGCCT-AAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
8969157 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 30 0.67
49 15 0.33
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:8969362 original size:73 final size:75
Alignment explanation
Indices: 8969111--8969459 Score: 405
Period size: 73 Copynumber: 4.7 Consensus size: 75
8969101 TTTCTGTTCA
* *
8969111 AAATGAGTTGAGCCT-AAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
8969172 ATA-T-TCGAG
66 ATATTGTC-AG
* * *
8969181 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTT---CAAAAAAATCAA
*
8969246 CTCATATTGTAAG
63 CTCATATTGTCAG
* *
8969259 AAATAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-C
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
8969323 ATATTG-CAG
66 ATATTGTCAG
** * *
8969332 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
8969396 ATATTGT--G
66 ATATTGTCAG
* * * * *
8969404 AGAGGCAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATG-AGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
8969460 TTTCTGCCTT
Statistics
Matches: 244, Mismatches: 20, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
70 14 0.06
71 27 0.11
72 25 0.10
73 62 0.25
74 7 0.03
75 35 0.14
76 7 0.03
77 14 0.06
78 52 0.21
79 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGTCAG
Found at i:8969388 original size:151 final size:148
Alignment explanation
Indices: 8969111--8969459 Score: 424
Period size: 151 Copynumber: 2.4 Consensus size: 148
8969101 TTTCTGTTCA
* * *
8969111 AAATGAGTTGAGCCT-AAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* * * *
8969172 ATATTCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTAAAAAA
66 ATATTCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTT---CAA
8969237 AAAAATCAACTCATATTGTAAG
127 AAAAATCAACTCATATTGTAAG
*
8969259 AAATAAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-C
1 AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
** *
8969323 ATATT-GCAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
66 ATATTCG-AGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAA
*
8969387 AATCAACTCATATTGTGAG
130 AATCAACTCATATTGTAAG
*** * * *
8969406 -AGGCAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATAAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA
8969460 TTTCTGCCTT
Statistics
Matches: 175, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
146 14 0.08
147 23 0.13
148 45 0.26
149 27 0.15
150 10 0.06
151 47 0.27
152 9 0.05
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (148 bp):
AAATAAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAA
ATCAACTCATATTGTAAG
Found at i:8969534 original size:93 final size:92
Alignment explanation
Indices: 8969382--8969552 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 92
8969372 TTCTGTTTTC
* *
8969382 AAAAAAATCAACTCATATTGTGAGAGGCAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGCAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
*
8969447 TTCCGTTTTTCAATTTCTGCCTTTAAA
66 TTCCGTCTTTCAATTTCTGCCTTTAAA
* * *
8969474 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGG-CAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
*
8969538 ATTTCTGTCTTTCAA
64 ATTTCCGTCTTTCAA
8969553 AAAAATCAAC
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
92 28 0.40
93 42 0.60
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (92 bp):
AAAAAAATCAACTCATATTGCGAGAGGCAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAAT
TTCCGTCTTTCAATTTCTGCCTTTAAA
Found at i:8969569 original size:169 final size:164
Alignment explanation
Indices: 8969310--8969611 Score: 446
Period size: 169 Copynumber: 1.8 Consensus size: 164
8969300 TCTGTTTTTC
*
8969310 AAAAAAATCAACCATATTGCAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAAAATCAACCATATTGCAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTTC
* * *
8969375 TGTTTTCAAAAAAATCAACTCATATTGTGAGAGG-CAGTTGAGCCTCAGGTCACACGCCGAGGTA
66 TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTCAGTT-AGCCTCAGATCACACACCGAGGTA
8969439 TTTTCAATTTCCGTTTTTCAATTTCTGCCTTTAAA
130 TTTTCAATTTCCGTTTTTCAATTTCTGCCTTTAAA
* *
8969474 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGCTATTTTCA
1 AAAAAAATCAAC-CATATTGC-AGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTTCA
* * *
8969538 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAGCTTCAGATCACACACTG
61 ATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTCAGTTAGCCTCAGATCACACACCG
8969603 AGGTATTTT
125 AGGTATTTT
8969612 TTCAATTTAT
Statistics
Matches: 122, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
164 12 0.10
165 10 0.08
166 17 0.14
168 25 0.20
169 54 0.44
170 4 0.03
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (164 bp):
AAAAAAATCAACCATATTGCAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATTTC
TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTCAGTTAGCCTCAGATCACACACCGAGGTAT
TTTCAATTTCCGTTTTTCAATTTCTGCCTTTAAA
Found at i:8969647 original size:76 final size:77
Alignment explanation
Indices: 8969474--8969823 Score: 264
Period size: 76 Copynumber: 4.5 Consensus size: 77
8969464 TGCCTTTAAA
* * *
8969474 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACACTGAGCTATTTTCAA
* *
8969539 TTTCTGTCTTTC
66 TTTATATCTTTC
*
8969551 AAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AG-CTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGATCACACACTGAGCTA--TTTT
8969614 CAATTTATAT-TTT-
63 CAATTTATATCTTTC
* * * ** * ** * *
8969627 TAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACA-TGTCGAGGTATTTTAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACACT-GAGCTATTTT-C
* *
8969691 AATTGTTTTTCAGATTCTGTTT
64 AA-----TTT-ATA-TCT-TTC
** * * * * ***
8969713 TCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACACTGAGCTATTTTCAA
* *
8969778 TTT-T-TTTTTT
66 TTTATATCTTTC
8969788 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGA
8969824 CTTTTTAATT
Statistics
Matches: 221, Mismatches: 33, Indels: 39
0.75 0.11 0.13
Matches are distributed among these distances:
75 15 0.07
76 77 0.35
77 50 0.23
78 14 0.06
80 3 0.01
81 3 0.01
82 2 0.01
83 1 0.00
84 1 0.00
85 4 0.02
86 50 0.23
87 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCACACACTGAGCTATTTTCAA
TTTATATCTTTC
Found at i:8969849 original size:29 final size:30
Alignment explanation
Indices: 8969807--8969866 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
8969797 CAACTCATAT
8969807 TGCGAGAGGTGAGTTGACT-TTTTAATTTC
1 TGCGAGAGGTGAGTTGACTCTTTTAATTTC
* *
8969836 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGACTCTTTTAATTTC
8969866 T
1 T
8969867 ATTTTTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 17 0.61
30 11 0.39
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGACTCTTTTAATTTC
Found at i:8970025 original size:247 final size:239
Alignment explanation
Indices: 8969281--8970037 Score: 738
Period size: 245 Copynumber: 3.1 Consensus size: 239
8969271 CCTCAAGACA
* *
8969281 TGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAAC-CATATTGC-AGAGGTGAGTTGAG
1 TGCTGAGCTATTTTCAATTTCT-TTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AG
* * * * * * * * *
8969344 CCTCAG--GACACGCTGAGGTA--ATTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGTGA
64 CTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTT-TAAAAAATCAACTCACATTGCGA
* * *** * * * **
8969405 GAGG-CAGTTGAGCCTC-AGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCA-ATTTCTGC
128 GAGGTGAGTTGAACCTCGA-GTCACATATCGAGGTATTTTAAAATT--GCTTTTCAGA-TTAAG-
** *
8969467 CTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACA
188 -TTT--TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* * *
8969522 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAGC
1 TGCTGAGCTATTTTCAATTTCT-TTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAGC
*
8969587 TTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTAAAAAATCAACTCACATTGCGAGA
65 TTCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTAAAAAATCAACTCACATTGCGAGA
* * * * * **
8969652 TGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTAAAATTGTTTTTCAGATTCTGTTTTC-A
130 GGTGAGTTGAACCTCGAGTCACATATCGAGGTATTTTAAAATTGCTTTTCAGATTAAGTTTTCAA
* *
8969716 AAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACG
195 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
8969761 TGCTGAGCTATTTTCAATTT-TTTTTTTAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT-GA
1 TGCTGAGCTATTTTCAATTTCTTTTTTTAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTAG-
* * * * * * *
8969824 CTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTATTTTTCAAAAATCAACTCA
64 C--TTCAGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTAAAAAATCAACTCA
*
8969887 TATTGCGAGAGGTGAGTTGAACCTTC-AGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCA-
120 CATTGCGAGAGGTGAGTTGAACC-TCGAGTCACATATCGAGGTATTTT-AAAAT-TGCTTTTCAG
8969950 AGTTAAG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
182 A-TTAAGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
*
8970008 TGCTGAGCTATTTTCAATTTCTATTTTTAA
1 TGCTGAGCTATTTTCAATTTCTTTTTTTAA
8970038 TGTCTGTTTT
Statistics
Matches: 444, Mismatches: 46, Indels: 45
0.83 0.09 0.08
Matches are distributed among these distances:
237 12 0.03
238 28 0.06
239 63 0.14
240 3 0.01
241 40 0.09
242 19 0.04
243 13 0.03
244 30 0.07
245 89 0.20
246 64 0.14
247 75 0.17
248 8 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (239 bp):
TGCTGAGCTATTTTCAATTTCTTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAGCT
TCAGATCACACACTGAGGTATCTTTTCAATTTATATTTTTAAAAAATCAACTCACATTGCGAGAG
GTGAGTTGAACCTCGAGTCACATATCGAGGTATTTTAAAATTGCTTTTCAGATTAAGTTTTCAAA
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
Found at i:8970713 original size:22 final size:22
Alignment explanation
Indices: 8970688--8970735 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
8970678 AAACCCCCCC
8970688 AAAAAAAACCTAACCCAAAAAA
1 AAAAAAAACCTAACCCAAAAAA
**
8970710 AAAAAAAACCTAACCCCCAAAA
1 AAAAAAAACCTAACCCAAAAAA
8970732 AAAA
1 AAAA
8970736 CCAAGAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.71, C:0.25, G:0.00, T:0.04
Consensus pattern (22 bp):
AAAAAAAACCTAACCCAAAAAA
Found at i:8976515 original size:93 final size:93
Alignment explanation
Indices: 8976403--8976574 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
8976393 GCCCATAAGT
* *
8976403 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8976468 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
8976496 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8976561 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
8976575 CAAATCCCAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8976570 original size:46 final size:46
Alignment explanation
Indices: 8976395--8976570 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
8976385 TGTAACCCGC
* * *
8976395 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
8976441 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
8976491 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
8976534 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8976571 TGCCCAAATC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:8978997 original size:30 final size:30
Alignment explanation
Indices: 8978953--8979041 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
8978943 CAAAGATAAC
8978953 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
8978982 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
8979012 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
8979042 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:8979001 original size:15 final size:15
Alignment explanation
Indices: 8978953--8979032 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
8978943 CAAAGATAAC
*
8978953 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
8978967 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
8978982 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
8978997 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
8979012 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
8979027 AAGAAA
1 AAGAAA
8979033 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:8979041 original size:15 final size:15
Alignment explanation
Indices: 8978964--8979041 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
8978954 AGAAAACCGA
8978964 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
8978979 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
8978993 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
8979008 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
8979024 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
8979039 ATA
1 ATA
8979042 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:8982102 original size:93 final size:93
Alignment explanation
Indices: 8981990--8982161 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
8981980 GCCCATAAGT
* *
8981990 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8982055 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
8982083 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8982148 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
8982162 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8982157 original size:46 final size:46
Alignment explanation
Indices: 8981982--8982157 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
8981972 TGTAACCCGC
* * *
8981982 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
8982028 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
8982078 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
8982121 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8982158 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:8983536 original size:20 final size:20
Alignment explanation
Indices: 8983500--8983552 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
8983490 GTAACATATA
* *
8983500 TAGAGTTTGCATATTTAATC
1 TAGAGTTCGCATATTTAACC
* *
8983520 TAGGGTTCGCATGTTTAACC
1 TAGAGTTCGCATATTTAACC
8983540 TAGAGTTCGCATA
1 TAGAGTTCGCATA
8983553 AAACAAATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (20 bp):
TAGAGTTCGCATATTTAACC
Found at i:8983920 original size:76 final size:77
Alignment explanation
Indices: 8983829--8983975 Score: 226
Period size: 77 Copynumber: 1.9 Consensus size: 77
8983819 GATAAATTCT
* * *
8983829 ATTAGGATAAAAAGATAAAAATAT-ATGAAATTTTCATTCTATTT-AAATTTTAAAGAAGGATAA
1 ATTAGGATAAAAAGATAAAAAGATGATGAAATTTTAATTCTATTTAAAATTTGAAA-AAGGATAA
8983892 GATATGATTTCAA
65 GATATGATTTCAA
* *
8983905 ATTAGGATAAGAAGATAAAAAGATGATGGAATTTTAATTCTATTTAAAATTTGAAAAAGGATAAG
1 ATTAGGATAAAAAGATAAAAAGATGATGAAATTTTAATTCTATTTAAAATTTGAAAAAGGATAAG
8983970 ATATGA
66 ATATGA
8983976 ATTCTAGTTG
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
76 22 0.34
77 33 0.52
78 9 0.14
ACGTcount: A:0.49, C:0.03, G:0.15, T:0.33
Consensus pattern (77 bp):
ATTAGGATAAAAAGATAAAAAGATGATGAAATTTTAATTCTATTTAAAATTTGAAAAAGGATAAG
ATATGATTTCAA
Found at i:8985900 original size:17 final size:18
Alignment explanation
Indices: 8985868--8985901 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8985858 CTTGTAATCG
*
8985868 AAAATGAAGAAGAATAAT
1 AAAATAAAGAAGAATAAT
8985886 AAAATAAAG-AGAATAA
1 AAAATAAAGAAGAATAA
8985902 CATATAGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (18 bp):
AAAATAAAGAAGAATAAT
Found at i:8986196 original size:16 final size:16
Alignment explanation
Indices: 8986149--8986196 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
8986139 CTATTTTTAA
8986149 ATATATTATATTATTTT
1 ATATATT-TATTATTTT
*
8986166 A-ATATTTGATGATTTT
1 ATATATTT-ATTATTTT
*
8986182 ATATATTTTTTATTT
1 ATATATTTATTATTT
8986197 GTTAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 1 0.04
16 18 0.69
17 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (16 bp):
ATATATTTATTATTTT
Found at i:9002717 original size:2 final size:2
Alignment explanation
Indices: 9002710--9002757 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
9002700 AAATTGCAAG
9002710 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9002751 -A TA TA TA
1 TA TA TA TA
9002758 CTAAAACTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9005352 original size:17 final size:17
Alignment explanation
Indices: 9005306--9005346 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
9005296 TCAACATCTA
*
9005306 AAAACCCAAC-AGC-CC
1 AAAACCCAACAACCTCC
9005321 AAAACCCAACAACCTCC
1 AAAACCCAACAACCTCC
*
9005338 AAAGCCCAA
1 AAAACCCAA
9005347 TCACCTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 10 0.45
16 2 0.09
17 10 0.45
ACGTcount: A:0.49, C:0.44, G:0.05, T:0.02
Consensus pattern (17 bp):
AAAACCCAACAACCTCC
Found at i:9005438 original size:22 final size:22
Alignment explanation
Indices: 9005407--9005475 Score: 102
Period size: 22 Copynumber: 3.1 Consensus size: 22
9005397 CAAATATCTT
9005407 CACTCCAACCACCCCACTAAAC
1 CACTCCAACCACCCCACTAAAC
* * *
9005429 CATTCCAACCACCCCAATCAAC
1 CACTCCAACCACCCCACTAAAC
*
9005451 CACTCCAACCACCCTACTAAAC
1 CACTCCAACCACCCCACTAAAC
9005473 CAC
1 CAC
9005476 CCGACTAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.36, C:0.52, G:0.00, T:0.12
Consensus pattern (22 bp):
CACTCCAACCACCCCACTAAAC
Found at i:9005473 original size:13 final size:12
Alignment explanation
Indices: 9005457--9005514 Score: 59
Period size: 13 Copynumber: 4.8 Consensus size: 12
9005447 CAACCACTCC
9005457 AACCACCCTACTA
1 AACCACCC-ACTA
9005470 AACCACCCGACTA
1 AACCACCC-ACTA
9005483 AACCACCC-C--
1 AACCACCCACTA
9005492 AACCACCCCACTA
1 AACCA-CCCACTA
9005505 AACCATCCCA
1 AACCA-CCCA
9005515 ACCACTCCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 5 0.13
10 3 0.08
11 2 0.05
13 29 0.74
ACGTcount: A:0.38, C:0.52, G:0.02, T:0.09
Consensus pattern (12 bp):
AACCACCCACTA
Found at i:9005474 original size:35 final size:35
Alignment explanation
Indices: 9005435--9005515 Score: 108
Period size: 35 Copynumber: 2.3 Consensus size: 35
9005425 AAACCATTCC
* * *
9005435 AACCACCCCAATCAACCACTCCAACCACCCTACTA
1 AACCACCCCAATAAACCACCCCAACCACCCCACTA
* *
9005470 AACCACCCGACTAAACCACCCCAACCACCCCACTA
1 AACCACCCCAATAAACCACCCCAACCACCCCACTA
*
9005505 AACCATCCCAA
1 AACCACCCCAA
9005516 CCACTCCACT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.38, C:0.52, G:0.01, T:0.09
Consensus pattern (35 bp):
AACCACCCCAATAAACCACCCCAACCACCCCACTA
Found at i:9005495 original size:22 final size:22
Alignment explanation
Indices: 9005470--9005525 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
9005460 CACCCTACTA
*
9005470 AACCACCCGACTAAACCACCCC
1 AACCACCCCACTAAACCACCCC
*
9005492 AACCACCCCACTAAACCATCCC
1 AACCACCCCACTAAACCACCCC
*
9005514 AACCACTCCACT
1 AACCACCCCACT
9005526 TGCCTACAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.36, C:0.54, G:0.02, T:0.09
Consensus pattern (22 bp):
AACCACCCCACTAAACCACCCC
Found at i:9005928 original size:19 final size:18
Alignment explanation
Indices: 9005891--9005932 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
9005881 GGAGAGAGTG
*
9005891 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
9005909 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
9005928 TTATT
1 TTATT
9005933 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:9005991 original size:33 final size:39
Alignment explanation
Indices: 9005917--9005998 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 39
9005907 TATTATTTTC
*
9005917 TATTATTATTATTATTACTAATACCACTATTATCATCAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
*
9005956 TATTACTATTA-TATTA-TAATA-C-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
9005989 TATTACTATT
1 TATTACTATT
9005999 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.52
Consensus pattern (39 bp):
TATTACTATTATTATTACTAATACCACTATTATCATCAT
Found at i:9006028 original size:23 final size:23
Alignment explanation
Indices: 9005944--9006028 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
9005934 CTAATACCAC
* *
9005944 TATTATCATCATTATTACTATTA-
1 TATTATTAT-ATTTTTACTATTAT
* * *
9005967 TATTATAATACCTTTTCATTATTAT
1 TATTATTATA--TTTTTACTATTAT
* * *
9005992 TACTATTGTGTTTTTACTATTAT
1 TATTATTATATTTTTACTATTAT
9006015 TATTATTATATTTT
1 TATTATTATATTTT
9006029 ATTTTTTTGT
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
22 1 0.02
23 30 0.65
24 9 0.20
25 6 0.13
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATTATATTTTTACTATTAT
Found at i:9007427 original size:9 final size:9
Alignment explanation
Indices: 9007406--9007440 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
9007396 CAAAAATTAT
9007406 TTTAAAAATA
1 TTTAAAAA-A
9007416 TTTAAAAAA
1 TTTAAAAAA
9007425 TTTAAAAAA
1 TTTAAAAAA
*
9007434 TATAAAA
1 TTTAAAA
9007441 TGGTGACATG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:9007760 original size:21 final size:21
Alignment explanation
Indices: 9007720--9007760 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9007710 TAAGAGAGTG
* *
9007720 TTAACTATCACTTTTTTTTTT
1 TTAACTATCACTATTATTTTT
9007741 TTAACTATCACTATTATTTT
1 TTAACTATCACTATTATTTT
9007761 GAATTTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (21 bp):
TTAACTATCACTATTATTTTT
Found at i:9008002 original size:14 final size:13
Alignment explanation
Indices: 9007952--9007993 Score: 84
Period size: 13 Copynumber: 3.2 Consensus size: 13
9007942 CTAGTTTAGT
9007952 AATATTTTTAAAA
1 AATATTTTTAAAA
9007965 AATATTTTTAAAA
1 AATATTTTTAAAA
9007978 AATATTTTTAAAA
1 AATATTTTTAAAA
9007991 AAT
1 AAT
9007994 TTAGTTTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
AATATTTTTAAAA
Found at i:9008725 original size:37 final size:39
Alignment explanation
Indices: 9008663--9008736 Score: 125
Period size: 37 Copynumber: 1.9 Consensus size: 39
9008653 AGTGGAGCCA
9008663 ATTCTTTCTTTATTTTTTTACTTTTTTAACTTTTGTCCT
1 ATTCTTTCTTTATTTTTTTACTTTTTTAACTTTTGTCCT
*
9008702 ATTCTTTCTTT-TTTTTTTA-TTTTTTAAGTTTTGTC
1 ATTCTTTCTTTATTTTTTTACTTTTTTAACTTTTGTC
9008737 TTTATCCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 15 0.44
38 8 0.24
39 11 0.32
ACGTcount: A:0.12, C:0.12, G:0.04, T:0.72
Consensus pattern (39 bp):
ATTCTTTCTTTATTTTTTTACTTTTTTAACTTTTGTCCT
Found at i:9008760 original size:38 final size:36
Alignment explanation
Indices: 9008671--9008760 Score: 99
Period size: 38 Copynumber: 2.4 Consensus size: 36
9008661 CAATTCTTTC
*
9008671 TTTATTTTTTTACTTTTTTAACTTTTGTCCTATTCTT
1 TTTATTTTTTTA-TTTTTTAACTTTTGTCCTATCCTT
* * *
9008708 TCTTTTTTTTTTATTTTTTAAGTTTTGTCTTTATCCTT
1 T-TTATTTTTTTATTTTTTAACTTTTGTC-CTATCCTT
*
9008746 ATTTATTTTATTATT
1 -TTTATTTTTTTATT
9008761 AATTTAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
37 16 0.36
38 27 0.61
39 1 0.02
ACGTcount: A:0.14, C:0.10, G:0.03, T:0.72
Consensus pattern (36 bp):
TTTATTTTTTTATTTTTTAACTTTTGTCCTATCCTT
Found at i:9008808 original size:23 final size:20
Alignment explanation
Indices: 9008776--9008830 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
9008766 AAAAAATTTG
*
9008776 AAATGTATATTTGAAATGTTTT
1 AAATATATATTT-AAA-GTTTT
*
9008798 ATAATATATATTTTAAGTTTT
1 A-AATATATATTTAAAGTTTT
9008819 AAATATATATTT
1 AAATATATATTT
9008831 TTTAAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 11 0.37
21 6 0.20
22 3 0.10
23 10 0.33
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (20 bp):
AAATATATATTTAAAGTTTT
Found at i:9008835 original size:22 final size:21
Alignment explanation
Indices: 9008793--9008831 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
9008783 TATTTGAAAT
9008793 GTTTTATAATATATATTTTAA
1 GTTTTATAATATATATTTTAA
9008814 GTTTTA-AATATATATTTT
1 GTTTTATAATATATATTTT
9008832 TTAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (21 bp):
GTTTTATAATATATATTTTAA
Found at i:9008894 original size:27 final size:26
Alignment explanation
Indices: 9008831--9008905 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
9008821 ATATATATTT
* * *
9008831 TTTAAATTATTTTTAAAATTTTAAATA
1 TTTAAA-TATTTTTAAAATATAAAACA
*
9008858 TTAAAGATATTTTTAATAATATAAAACA
1 TTTAA-ATATTTTTAA-AATATAAAACA
9008886 TTTAAATA-TTTTAAAGATAT
1 TTTAAATATTTTTAAA-ATAT
9008906 GACCTTTCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
25 1 0.03
26 10 0.25
27 16 0.40
28 13 0.32
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (26 bp):
TTTAAATATTTTTAAAATATAAAACA
Found at i:9009051 original size:19 final size:19
Alignment explanation
Indices: 9009027--9009068 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
9009017 TATTTAAAAG
*
9009027 TTAAAAAAT-AATATTTTAT
1 TTAAAAAATGAA-ATTTTAA
9009046 TTAAAAAATGAAATTTTAA
1 TTAAAAAATGAAATTTTAA
9009065 TTAA
1 TTAA
9009069 TTAAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
TTAAAAAATGAAATTTTAA
Found at i:9009113 original size:16 final size:15
Alignment explanation
Indices: 9009069--9009124 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 15
9009059 TTTTAATTAA
9009069 TTAAAAAA-AATTTG
1 TTAAAAAATAATTTG
*
9009083 TTAAAAAATTTATTTG
1 TTAAAAAA-TAATTTG
*
9009099 TTAAAAAATGAATTTA
1 TTAAAAAAT-AATTTG
*
9009115 TTTAAAAATA
1 TTAAAAAATA
9009125 TATATATTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 8 0.23
15 2 0.06
16 25 0.71
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (15 bp):
TTAAAAAATAATTTG
Found at i:9009113 original size:32 final size:30
Alignment explanation
Indices: 9009068--9009137 Score: 77
Period size: 32 Copynumber: 2.3 Consensus size: 30
9009058 ATTTTAATTA
* * *
9009068 ATTAAAAAAAATTTGTTAAAAAATTTATTT
1 ATTAAAAAAAATTTATTAAAAAATATATAT
* *
9009098 GTTAAAAAATGAATTTATTTAAAAATATATAT
1 ATTAAAAAA--AATTTATTAAAAAATATATAT
9009130 ATTAAAAA
1 ATTAAAAA
9009138 GTAAAATTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 8 0.25
32 24 0.75
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (30 bp):
ATTAAAAAAAATTTATTAAAAAATATATAT
Found at i:9009642 original size:40 final size:41
Alignment explanation
Indices: 9009598--9009682 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 41
9009588 GTGTTAGTTA
9009598 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATA-T
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
* *
9009638 TAATTTTTTAATTTTAGTACATATTTATAAATTTATATACT
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
9009679 TAAT
1 TAAT
9009683 ATATATTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
40 37 0.88
41 5 0.12
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (41 bp):
TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
Found at i:9009663 original size:20 final size:20
Alignment explanation
Indices: 9009600--9009663 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
9009590 GTTAGTTATA
*
9009600 ATTTTTTAATTTTAGTACAC
1 ATTTTTTAATTTTAGTACAT
** * *
9009620 ATTCATAAATTTATA-TA-TT
1 ATTTTTTAATTT-TAGTACAT
9009639 AATTTTTTAATTTTAGTACAT
1 -ATTTTTTAATTTTAGTACAT
9009660 ATTT
1 ATTT
9009664 ATAAATTTAT
Statistics
Matches: 31, Mismatches: 9, Indels: 8
0.65 0.19 0.17
Matches are distributed among these distances:
19 2 0.06
20 26 0.84
21 3 0.10
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (20 bp):
ATTTTTTAATTTTAGTACAT
Found at i:9009670 original size:20 final size:20
Alignment explanation
Indices: 9009607--9009671 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
9009597 ATAATTTTTT
* *
9009607 AATTTTAGTACACATTCATA
1 AATTTTAGTACATATTTATA
* * *
9009627 AATTTATA-TA-TTAATTTTTT
1 AATTT-TAGTACAT-ATTTATA
9009647 AATTTTAGTACATATTTATA
1 AATTTTAGTACATATTTATA
9009667 AATTT
1 AATTT
9009672 ATATACTTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
19 2 0.06
20 28 0.85
21 3 0.09
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.52
Consensus pattern (20 bp):
AATTTTAGTACATATTTATA
Found at i:9009693 original size:40 final size:40
Alignment explanation
Indices: 9009606--9009693 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
9009596 TATAATTTTT
* *
9009606 TAATTTTAGTACACATTCATAAATTTATATATTAATTTTT
1 TAATTTTAGTACACATTCATAAATTTATATATTAATTATA
* *
9009646 TAATTTTAGTACATATTTATAAATTTATATACTTAA-TATA
1 TAATTTTAGTACACATTCATAAATTTATATA-TTAATTATA
*
9009686 TATTTTTA
1 TAATTTTA
9009694 ATAGGTAAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 38 0.90
41 4 0.10
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (40 bp):
TAATTTTAGTACACATTCATAAATTTATATATTAATTATA
Done.