Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 342 of 425
Found at i:105877443 original size:22 final size:22
Alignment explanation
Indices: 105877418--105877459 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
105877408 AAATAGATTT
105877418 TTATTATAGATATT-TATTATTG
1 TTATTAT-GATATTATATTATTG
*
105877440 TTATTATTATATTATATTAT
1 TTATTATGATATTATATTAT
105877460 ATCTATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (22 bp):
TTATTATGATATTATATTATTG
Found at i:105878551 original size:6 final size:6
Alignment explanation
Indices: 105878515--105878571 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
105878505 TGTGTACCAC
* * ** * **
105878515 TACTGT TACTGC TACTAT TACTAC TACTGT TATTGT TGTTGT TACTGT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT
105878563 TACTGT TAC
1 TACTGT TAC
105878572 CATTACGATG
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:105878753 original size:18 final size:18
Alignment explanation
Indices: 105878732--105878776 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
105878722 ATTAACTGAT
*
105878732 ACTGAATAACTGATTGTC
1 ACTGAATAACTGATCGTC
* * *
105878750 ACTGAACAATTGATCGTT
1 ACTGAATAACTGATCGTC
105878768 ACTGAATAA
1 ACTGAATAA
105878777 TATTGATAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (18 bp):
ACTGAATAACTGATCGTC
Found at i:105888167 original size:19 final size:19
Alignment explanation
Indices: 105888143--105888180 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
105888133 GGGACCATAC
105888143 AAAATAAAATA-AAAAACAA
1 AAAATAAAA-ACAAAAACAA
105888162 AAAATAAAAACAAAAACAA
1 AAAATAAAAACAAAAACAA
105888181 TAAACAACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (19 bp):
AAAATAAAAACAAAAACAA
Found at i:105888170 original size:13 final size:14
Alignment explanation
Indices: 105888148--105888177 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
105888138 CATACAAAAT
105888148 AAAATAAAAAACAA
1 AAAATAAAAAACAA
105888162 AAAAT-AAAAACAA
1 AAAATAAAAAACAA
105888175 AAA
1 AAA
105888178 CAATAAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.87, C:0.07, G:0.00, T:0.07
Consensus pattern (14 bp):
AAAATAAAAAACAA
Found at i:105888602 original size:27 final size:27
Alignment explanation
Indices: 105888564--105888619 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
105888554 GTAATTTTTT
105888564 TCTATTTTTCATTATTCCTCTGTAAAA
1 TCTATTTTTCATTATTCCTCTGTAAAA
*
105888591 TCTATTTTTCATTATTTCTCTGTAAAA
1 TCTATTTTTCATTATTCCTCTGTAAAA
105888618 TC
1 TC
105888620 AGGCTATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.04, T:0.54
Consensus pattern (27 bp):
TCTATTTTTCATTATTCCTCTGTAAAA
Found at i:105891981 original size:18 final size:18
Alignment explanation
Indices: 105891960--105892031 Score: 74
Period size: 18 Copynumber: 4.0 Consensus size: 18
105891950 TAAATGATAC
*
105891960 TGACAGTTACTGAATAAT
1 TGACTGTTACTGAATAAT
* *
105891978 TGACTGGTACTGAATAAC
1 TGACTGTTACTGAATAAT
* * *
105891996 TGATTGTCACTGAACAAT
1 TGACTGTTACTGAATAAT
105892014 TGA-TCGTTACTGAATAAT
1 TGACT-GTTACTGAATAAT
105892032 ATTGATAAAG
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
17 1 0.02
18 42 0.98
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (18 bp):
TGACTGTTACTGAATAAT
Found at i:105894796 original size:21 final size:22
Alignment explanation
Indices: 105894753--105894798 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
105894743 TATAAATTAT
* *
105894753 TTTCTTACTCTTTCAATTTAAA
1 TTTCTTAATCTTTCAATTAAAA
*
105894775 TTTCTTAAT-TTTCTATTAAAA
1 TTTCTTAATCTTTCAATTAAAA
105894796 TTT
1 TTT
105894799 ATCAATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTCTTAATCTTTCAATTAAAA
Found at i:105894805 original size:21 final size:21
Alignment explanation
Indices: 105894763--105894815 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
105894753 TTTCTTACTC
* * *
105894763 TTTCAATTTAAATTTCTTAAT
1 TTTCAATTAAAATTTATCAAT
*
105894784 TTTCTATTAAAATTTATCAAT
1 TTTCAATTAAAATTTATCAAT
105894805 TTAATCAATTA
1 TT--TCAATTA
105894816 TATATCATGG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 19 0.76
23 6 0.24
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTCAATTAAAATTTATCAAT
Found at i:105895499 original size:22 final size:22
Alignment explanation
Indices: 105895469--105895518 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
105895459 TTGAAAAGTA
* *
105895469 TATAGATTAAAATATATTAAAT
1 TATAAATTAAAATAGATTAAAT
* *
105895491 TATAAATTAATATGGATTAAAT
1 TATAAATTAAAATAGATTAAAT
105895513 TCATAA
1 T-ATAA
105895519 CTTATTCATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (22 bp):
TATAAATTAAAATAGATTAAAT
Found at i:105899922 original size:22 final size:22
Alignment explanation
Indices: 105899897--105899942 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
105899887 GTGTATATAT
105899897 ATATATTATATAATTTAAGTTA
1 ATATATTATATAATTTAAGTTA
105899919 ATATATTATATAATTTAAGTTA
1 ATATATTATATAATTTAAGTTA
105899941 AT
1 AT
105899943 TTTAAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
ATATATTATATAATTTAAGTTA
Found at i:105903595 original size:10 final size:10
Alignment explanation
Indices: 105903551--105903597 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
105903541 TGAATACTTA
105903551 ATATT-TAAGT
1 ATATTATAA-T
*
105903561 ATATAATAAT
1 ATATTATAAT
*
105903571 ATAATATAAT
1 ATATTATAAT
105903581 ATATTATAAT
1 ATATTATAAT
105903591 ATATTAT
1 ATATTAT
105903598 TATAAATAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
10 29 0.91
11 3 0.09
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (10 bp):
ATATTATAAT
Found at i:105905858 original size:26 final size:26
Alignment explanation
Indices: 105905821--105905956 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
105905811 TGATACAAAT
*
105905821 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105905847 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105905873 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105905899 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105905925 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105905951 TGATAA
1 TGATAA
105905957 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105907982 original size:136 final size:136
Alignment explanation
Indices: 105907738--105908022 Score: 536
Period size: 136 Copynumber: 2.1 Consensus size: 136
105907728 GAGTAGTCTC
105907738 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
105907803 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGG-TCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
105907867 ACTGTTA
131 A-TGTTA
105907874 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
105907939 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
105908004 ATGTTA
131 ATGTTA
**
105908010 CCTGAATGGGCTT
1 CCCAAATGGGCTT
105908023 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
136 131 0.90
137 15 0.10
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ATGTTA
Found at i:105911806 original size:26 final size:26
Alignment explanation
Indices: 105911769--105911903 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
105911759 TGATACAAAT
*
105911769 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105911795 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105911821 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105911847 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105911872 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105911898 TGATAA
1 TGATAA
105911904 GAATTCATGT
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
25 25 0.24
26 78 0.76
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105913930 original size:137 final size:137
Alignment explanation
Indices: 105913684--105913970 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
105913674 GAGTAGTCTC
105913684 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
105913749 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
105913814 ACTGTTA
131 ACTGTTA
105913821 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
105913886 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
105913951 ACTGTTA
131 ACTGTTA
**
105913958 CCTGAATGGGCTT
1 CCCAAATGGGCTT
105913971 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:105917670 original size:17 final size:17
Alignment explanation
Indices: 105917648--105917690 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
105917638 AGATTTTGGG
* *
105917648 AAAATAGAATAAAATGA
1 AAAATAAAATAAAATAA
105917665 AAAATAAAATAAAATAA
1 AAAATAAAATAAAATAA
105917682 AAAATAAAA
1 AAAATAAAA
105917691 AGGTTAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (17 bp):
AAAATAAAATAAAATAA
Found at i:105919128 original size:12 final size:12
Alignment explanation
Indices: 105919111--105919135 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
105919101 GAGTGGTTTT
105919111 AATATATATATA
1 AATATATATATA
105919123 AATATATATATA
1 AATATATATATA
105919135 A
1 A
105919136 TTGTCAGGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATATATATATA
Found at i:105919723 original size:21 final size:23
Alignment explanation
Indices: 105919684--105919726 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
105919674 TTTTTTAGGG
105919684 TTAGGGTTTTAATTGGTTTAAGA
1 TTAGGGTTTTAATTGGTTTAAGA
105919707 TTAGGG-TTTAA-TGGTTTAAG
1 TTAGGGTTTTAATTGGTTTAAG
105919727 GTTTTTAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 5 0.25
23 6 0.30
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.47
Consensus pattern (23 bp):
TTAGGGTTTTAATTGGTTTAAGA
Found at i:105919747 original size:15 final size:15
Alignment explanation
Indices: 105919707--105919749 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
105919697 TGGTTTAAGA
* *
105919707 TTAGGGTTTAATGGT
1 TTAGGGTTTTAGGGT
*
105919722 TTAAGGTTTTTAGGGT
1 TT-AGGGTTTTAGGGT
105919738 TTAGGGTTTTAG
1 TTAGGGTTTTAG
105919750 TATTTTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.49
Consensus pattern (15 bp):
TTAGGGTTTTAGGGT
Found at i:105920030 original size:125 final size:126
Alignment explanation
Indices: 105919885--105920185 Score: 487
Period size: 126 Copynumber: 2.4 Consensus size: 126
105919875 TAATTACAAA
*
105919885 AAAAAAAGCTCCCACGTGGACGTTCTTTTGCTACAGTAGTATCTGAAAAAATAA-TTTGAAAAGA
1 AAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAAAAGA
* ** *
105919949 TGTTTCTGAAAAAATAGTGTCAAAAACGCTTCAAGAAGGATGCATTGTCAGCAAAATTACG
66 TGTTTCTGAAAAAATAGTGTAAAAAACGCTTCAAGAAGGATGCACAGTCAGCAAAATTAAG
* * *
105920010 AAAAAAATCTCCCACATGGACGCTCTTTTGCTACAGTAGTATTTGAAAAAATAATTTTGAAAAGA
1 AAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAAAAGA
*
105920075 TGTTTTTGAAAAAATAGTGTAAAAAACGCTTCAAGAAGGATGCACAGTCAGCAAAATTAAG
66 TGTTTCTGAAAAAATAGTGTAAAAAACGCTTCAAGAAGGATGCACAGTCAGCAAAATTAAG
* * *
105920136 GAAAAAAGCTCCCACGTGGACGCTCTTTTACTGCAGTAGTATCTGAAAAA
1 AAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAA
105920186 GCTTTAGTCT
Statistics
Matches: 160, Mismatches: 15, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
125 50 0.31
126 110 0.69
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (126 bp):
AAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAAAAGA
TGTTTCTGAAAAAATAGTGTAAAAAACGCTTCAAGAAGGATGCACAGTCAGCAAAATTAAG
Found at i:105920070 original size:14 final size:14
Alignment explanation
Indices: 105920051--105920090 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
105920041 TACAGTAGTA
105920051 TTTGAAAAAATAAT
1 TTTGAAAAAATAAT
* **
105920065 TTTGAAAAGATGTT
1 TTTGAAAAAATAAT
105920079 TTTGAAAAAATA
1 TTTGAAAAAATA
105920091 GTGTAAAAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (14 bp):
TTTGAAAAAATAAT
Found at i:105927213 original size:18 final size:18
Alignment explanation
Indices: 105927171--105927213 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
105927161 GACTAGAAAA
* *
105927171 AGGAAACATAAAAGGGTT
1 AGGATACATAAAAGGGCT
* *
105927189 AGTATACATATAAGGGCT
1 AGGATACATAAAAGGGCT
105927207 AGGATAC
1 AGGATAC
105927214 GCACTTGGCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.09, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:105929914 original size:22 final size:21
Alignment explanation
Indices: 105929886--105929928 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
105929876 TTTTATTTAC
* *
105929886 TTATTTATGCTTTTATTCATTT
1 TTATTTAAGATTTTATT-ATTT
105929908 TTATTTAAGATTTTATTATTT
1 TTATTTAAGATTTTATTATTT
105929929 GTTTTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (21 bp):
TTATTTAAGATTTTATTATTT
Found at i:105931331 original size:11 final size:12
Alignment explanation
Indices: 105931315--105931365 Score: 58
Period size: 11 Copynumber: 4.6 Consensus size: 12
105931305 TTGACAAAAA
105931315 TTGAGAGA-AAT
1 TTGAGAGAGAAT
105931326 TT--GAGAGAAT
1 TTGAGAGAGAAT
105931336 TTGA-AGAGAAT
1 TTGAGAGAGAAT
105931347 TT-AGAGAGAAT
1 TTGAGAGAGAAT
105931358 TGTGAGAG
1 T-TGAGAG
105931366 GACTATTGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
9 4 0.12
10 6 0.18
11 19 0.56
12 1 0.03
13 4 0.12
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.27
Consensus pattern (12 bp):
TTGAGAGAGAAT
Found at i:105931365 original size:22 final size:21
Alignment explanation
Indices: 105931315--105931365 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 21
105931305 TTGACAAAAA
105931315 TTGAGAGAAATTTGAGAGAAT
1 TTGAGAGAAATTTGAGAGAAT
105931336 TTGA-AGAGAATTTAGAGAGAAT
1 TTGAGAGA-AATTT-GAGAGAAT
105931358 TGTGAGAG
1 T-TGAGAG
105931366 GACTATTGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.12
21 9 0.35
22 9 0.35
23 3 0.12
24 2 0.08
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.27
Consensus pattern (21 bp):
TTGAGAGAAATTTGAGAGAAT
Found at i:105931818 original size:32 final size:31
Alignment explanation
Indices: 105931768--105931843 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 31
105931758 TAACATTATT
* **
105931768 TATTTAAAATTGTAATTATTATATTTTAA-TAA
1 TATTTAAAA-TATAATTA-TATATTCAAATTAA
105931800 TATTTAAAATATAGATTATATATTCAAATTAA
1 TATTTAAAATATA-ATTATATATTCAAATTAA
*
105931832 TTTTTAAAATAT
1 TATTTAAAATAT
105931844 TTAAAATTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 11 0.29
32 27 0.71
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (31 bp):
TATTTAAAATATAATTATATATTCAAATTAA
Found at i:105937259 original size:19 final size:19
Alignment explanation
Indices: 105937235--105937271 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
105937225 AATAAACGTG
*
105937235 ACAAAAAGTAGAAAAATGA
1 ACAAAAAGAAGAAAAATGA
*
105937254 ACAAAAAGAAGGAAAATG
1 ACAAAAAGAAGAAAAATG
105937272 GAAAAAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.68, C:0.05, G:0.19, T:0.08
Consensus pattern (19 bp):
ACAAAAAGAAGAAAAATGA
Found at i:105937968 original size:17 final size:18
Alignment explanation
Indices: 105937940--105937982 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
105937930 GAATTATATA
**
105937940 TTAATATATTTTTTATTT
1 TTAATATATTTTAAATTT
105937958 TTAAT-TATTTTAAATTT
1 TTAATATATTTTAAATTT
105937975 TTAATATA
1 TTAATATA
105937983 ACTATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTAATATATTTTAAATTT
Found at i:105938065 original size:22 final size:22
Alignment explanation
Indices: 105938026--105938084 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
105938016 GTTTTAAGAA
*
105938026 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
105938047 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
105938069 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
105938085 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:105938101 original size:26 final size:24
Alignment explanation
Indices: 105938055--105938114 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
105938045 ATTTGTTTTA
*
105938055 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
105938079 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
105938105 TTTTTTATTT
1 ATATTTATTT
105938115 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:105941945 original size:29 final size:30
Alignment explanation
Indices: 105941907--105941974 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
105941897 AGTCTATATA
* *
105941907 TTTATAATTTTAAAGA-ATTAAATTAAAAT
1 TTTATTATTTTAAAGAGATTAAAATAAAAT
* *
105941936 TTTATTATTTTTAAGAGATTAAAATATAAT
1 TTTATTATTTTAAAGAGATTAAAATAAAAT
105941966 TTTA-TATTT
1 TTTATTATTT
105941975 ATTAATTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.56
30 15 0.44
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (30 bp):
TTTATTATTTTAAAGAGATTAAAATAAAAT
Found at i:105942327 original size:6 final size:6
Alignment explanation
Indices: 105942311--105942363 Score: 90
Period size: 6 Copynumber: 9.0 Consensus size: 6
105942301 TCAATTTTTT
*
105942311 TAAAAA T-AAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAACA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
105942358 TAAAAA
1 TAAAAA
105942364 AGATGCTCCA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
5 5 0.11
6 39 0.89
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:105946022 original size:16 final size:16
Alignment explanation
Indices: 105946001--105946031 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
105945991 TTTAAGATAC
105946001 ATATTAAATCGTACAT
1 ATATTAAATCGTACAT
105946017 ATATTAAATCGTACA
1 ATATTAAATCGTACA
105946032 ATGGAGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (16 bp):
ATATTAAATCGTACAT
Found at i:105946366 original size:2 final size:2
Alignment explanation
Indices: 105946359--105946396 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
105946349 TATTATATGC
*
105946359 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105946397 CGATGAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:105958213 original size:13 final size:13
Alignment explanation
Indices: 105958136--105958213 Score: 54
Period size: 15 Copynumber: 5.6 Consensus size: 13
105958126 TTTTAACAGA
105958136 TTAT-TATTA-TT
1 TTATATATTATTT
105958147 TTATATCATTATTT
1 TTATAT-ATTATTT
*
105958161 TTAT-TTTTACTTGT
1 TTATATATTA-TT-T
105958175 ATTATATATTATTTAT
1 -TTATATATTA-TT-T
105958191 TTATACATATTATTT
1 TTAT--ATATTATTT
105958206 TTATATAT
1 TTATATAT
105958214 AAACTTTCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
11 4 0.07
12 4 0.07
13 11 0.20
14 7 0.13
15 13 0.24
16 9 0.17
17 6 0.11
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (13 bp):
TTATATATTATTT
Found at i:105958465 original size:15 final size:15
Alignment explanation
Indices: 105958428--105958466 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
105958418 ATACTATATA
105958428 TATGTATTAAATTAT
1 TATGTATTAAATTAT
*
105958443 TAAT-TATTTAATTAT
1 T-ATGTATTAAATTAT
105958458 TATGTATTA
1 TATGTATTA
105958467 TTTTATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
14 2 0.10
15 16 0.80
16 2 0.10
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (15 bp):
TATGTATTAAATTAT
Found at i:105959019 original size:116 final size:116
Alignment explanation
Indices: 105958882--105959122 Score: 466
Period size: 116 Copynumber: 2.1 Consensus size: 116
105958872 ATATCTTTGT
105958882 ATGC-ATATTGTAATATTTGCTTTATATGTATTATTCTTTATATCATTGCCATCATTTTGATTAA
1 ATGCAATA-TGTAATATTTGCTTTATATGTATTATTCTTTATATCATTGCCATCATTTTGATTAA
105958946 ATGCATGTATTATTTACCTGTTACAATAATATGTTACTAGGTATGATTTATA
65 ATGCATGTATTATTTACCTGTTACAATAATATGTTACTAGGTATGATTTATA
105958998 ATGCAATATGTAATATTTGCTTTATATGTATTATTCTTTATATCATTGCCATCATTTTGATTAAA
1 ATGCAATATGTAATATTTGCTTTATATGTATTATTCTTTATATCATTGCCATCATTTTGATTAAA
105959063 TGCATGTATTATTTACCTGTTACAATAATATGTTACTAGGTATGATTTATA
66 TGCATGTATTATTTACCTGTTACAATAATATGTTACTAGGTATGATTTATA
105959114 ATGCAATAT
1 ATGCAATAT
105959123 AATTCTCCAC
Statistics
Matches: 124, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
116 121 0.98
117 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.11, T:0.47
Consensus pattern (116 bp):
ATGCAATATGTAATATTTGCTTTATATGTATTATTCTTTATATCATTGCCATCATTTTGATTAAA
TGCATGTATTATTTACCTGTTACAATAATATGTTACTAGGTATGATTTATA
Found at i:105959038 original size:16 final size:18
Alignment explanation
Indices: 105959003--105959040 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
105958993 TTATAATGCA
105959003 ATATGTAATATTTGCTTT
1 ATATGTAATATTTGCTTT
*
105959021 ATATGTATTA-TT-CTTT
1 ATATGTAATATTTGCTTT
105959037 ATAT
1 ATAT
105959041 CATTGCCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 2 0.11
18 9 0.47
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (18 bp):
ATATGTAATATTTGCTTT
Found at i:105970428 original size:119 final size:119
Alignment explanation
Indices: 105970217--105970687 Score: 773
Period size: 119 Copynumber: 4.0 Consensus size: 119
105970207 TTGAAGACAA
** * *
105970217 CAGATCTAGA-CTTCAGACATTTATGCTGAAGCAGATCGAAGATGATTTGGTATTCTTGTGTTTA
1 CAGATCTA-ACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTA
* * *
105970281 CAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCGAATATAG
65 CAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAATATAG
105970336 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* * *
105970401 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAAACATTCTCAAATATAA
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAATATAG
105970455 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* *
105970520 AAGAAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAATATAG
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAATATAG
*
105970574 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTTTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* * * *
105970639 AAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAA
105970688 CAGACTCAAG
Statistics
Matches: 329, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
118 1 0.00
119 328 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (119 bp):
CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAATATAG
Found at i:105970839 original size:84 final size:83
Alignment explanation
Indices: 105970611--105970854 Score: 389
Period size: 83 Copynumber: 2.9 Consensus size: 83
105970601 GAAGCAGATC
* * ** *
105970611 CAAGATGATTTGGTATTTTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
105970676 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
105970694 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
105970759 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
105970777 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
* *
105970842 AGACGTTCTCAAA
65 AAATGTTCTCAAA
105970855 TATAGCAGAT
Statistics
Matches: 149, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
83 88 0.59
84 61 0.41
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:105971006 original size:84 final size:84
Alignment explanation
Indices: 105970897--105971084 Score: 317
Period size: 84 Copynumber: 2.3 Consensus size: 84
105970887 GAAGCAGATC
*
105970897 CAAGATGATTTA-GCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTC
1 CAAGATGATTTAGGCATCCTTATGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTC
105970961 AAATGTTCTCAAACAGACT
66 AAATGTTCTCAAACAGACT
* * *
105970980 CAAGATGGTTTAGGCATCCTTATGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGATTTAGGCATCCTTATGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTC
105971045 AAATGTTCTCAAACAGACT
66 AAATGTTCTCAAACAGACT
*
105971064 CAAGATGATTT-GACATCCTTA
1 CAAGATGATTTAGGCATCCTTA
105971085 CAAATCGAAG
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
83 20 0.20
84 78 0.80
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (84 bp):
CAAGATGATTTAGGCATCCTTATGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTC
AAATGTTCTCAAACAGACT
Found at i:105971083 original size:286 final size:285
Alignment explanation
Indices: 105970492--105971083 Score: 1004
Period size: 286 Copynumber: 2.1 Consensus size: 285
105970482 GAAGCAGATC
* * * *
105970492 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGTAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
*
105970557 GACGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTT
66 GACGTTCTCAAATATAGCAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGATTT
* * ** *
105970622 GGTATTTTTGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAA
131 AGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAA
*
105970687 ACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATG
196 ACAGACTCAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAGGACCTTGCAGATATG
105970752 ACTCTCAAATGTTCTCAAACAGACT
261 ACTCTCAAATGTTCTCAAACAGACT
* *
105970777 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTC
1 CAAGATGATTT-GGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTC
*
105970842 AGACGTTCTCAAATATAGCAGATCTAACCTTCAAATTTTTATACTGAAGCAGATCCAAGATGATT
65 AGACGTTCTCAAATATAGCAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGATT
*
105970907 TAGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCAAATGTTCTCA
130 TAGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCA
*
105970972 AACAGACTCAAGATGGTTTAGGCATCCTTATGCTTACAAGGAACAAGTCGAGGACCTTGCAGATA
195 AACAGACTCAAGATGGTTT-GGCATCCTTATGCTTACAAGGAACAAATCGAGGACCTTGCAGATA
*
105971037 TGATTCTCAAATGTTCTCAAACAGACT
259 TGACTCTCAAATGTTCTCAAACAGACT
*
105971064 CAAGATGATTTGACATCCTT
1 CAAGATGATTTGGCATCCTT
105971084 ACAAATCGAA
Statistics
Matches: 286, Mismatches: 19, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
285 10 0.03
286 197 0.69
287 79 0.28
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (285 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
GACGTTCTCAAATATAGCAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGATTT
AGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAA
ACAGACTCAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCGAGGACCTTGCAGATATG
ACTCTCAAATGTTCTCAAACAGACT
Found at i:105972883 original size:13 final size:13
Alignment explanation
Indices: 105972806--105972883 Score: 54
Period size: 15 Copynumber: 5.6 Consensus size: 13
105972796 TTTTAACAGA
105972806 TTAT-TATTA-TT
1 TTATATATTATTT
105972817 TTATATCATTATTT
1 TTATAT-ATTATTT
*
105972831 TTAT-TTTTACTTGT
1 TTATATATTA-TT-T
105972845 ATTATATATTATTTAT
1 -TTATATATTA-TT-T
105972861 TTATACATATTATTT
1 TTAT--ATATTATTT
105972876 TTATATAT
1 TTATATAT
105972884 AAACTTTCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
11 4 0.07
12 4 0.07
13 11 0.20
14 7 0.13
15 13 0.24
16 9 0.17
17 6 0.11
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (13 bp):
TTATATATTATTT
Found at i:105973134 original size:15 final size:15
Alignment explanation
Indices: 105973097--105973135 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
105973087 ATACTATATA
105973097 TATGTATTAAATTAT
1 TATGTATTAAATTAT
*
105973112 TAAT-TATTTAATTAT
1 T-ATGTATTAAATTAT
105973127 TATGTATTA
1 TATGTATTA
105973136 TTTTATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
14 2 0.10
15 16 0.80
16 2 0.10
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (15 bp):
TATGTATTAAATTAT
Found at i:105973265 original size:19 final size:21
Alignment explanation
Indices: 105973228--105973268 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
105973218 GCTCAATATA
*
105973228 TTTTATATATAATTATTATTC
1 TTTTATAAATAATTATTATTC
*
105973249 TTTTATAAATATTTTATTAT
1 TTTTATAAATA-ATTATTAT
105973269 GATGTGTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTATAAATAATTATTATTC
Found at i:105975486 original size:11 final size:11
Alignment explanation
Indices: 105975470--105975500 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
105975460 ATTTGTGAAT
105975470 ATGAAATTGGC
1 ATGAAATTGGC
105975481 ATGAAATTGGC
1 ATGAAATTGGC
105975492 ATGAAATTG
1 ATGAAATTG
105975501 AATGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29
Consensus pattern (11 bp):
ATGAAATTGGC
Found at i:105976635 original size:5 final size:5
Alignment explanation
Indices: 105976625--105976660 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
105976615 TGAGATAAAA
105976625 AAATT AAATT AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT AAATT AAATT A
105976661 GTTTGAAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AAATT
Found at i:105977219 original size:2 final size:2
Alignment explanation
Indices: 105977212--105977247 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
105977202 GCATGAATGC
105977212 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
105977248 GTGAATTATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:105977296 original size:29 final size:29
Alignment explanation
Indices: 105977251--105977361 Score: 168
Period size: 29 Copynumber: 3.8 Consensus size: 29
105977241 TATATATGTG
* *
105977251 AATTATCGAGCATTAAGTGTGCGAAGAAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
105977280 AATTAACGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
105977309 AATTATTGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
* *
105977338 AACTATCGAGCACTAAGCGTGCGA
1 AATTATCGAGCACTAAGTGTGCGA
105977362 TCTCATTGCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 74 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:105980323 original size:40 final size:40
Alignment explanation
Indices: 105980279--105980463 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
105980269 GCTACTCGTT
* * *
105980279 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
105980319 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
105980359 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
105980399 C-AATGCCTTC-GGATCTTAGTCCGAATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
105980439 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
105980464 CATCATTCGA
Statistics
Matches: 130, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
39 35 0.27
40 88 0.68
41 7 0.05
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:105980448 original size:79 final size:80
Alignment explanation
Indices: 105980279--105980463 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 80
105980269 GCTACTCGTT
* * *
105980279 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCG
* *
105980343 GATTTAGTAACTCGCA
65 AATTTAGTAACTAGCA
*
105980359 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAC-AATGCCTTC-GGATCTTAGT-C
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTA-TCC
105980420 CGAATTTAGTAACTTAGCA
63 CGAATTTAGTAAC-TAGCA
105980439 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
105980464 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 3 0.03
79 45 0.49
80 42 0.46
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGA
ATTTAGTAACTAGCA
Found at i:105992812 original size:25 final size:25
Alignment explanation
Indices: 105992783--105992830 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
105992773 TTATAATATG
* * *
105992783 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
105992808 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
105992831 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:105992899 original size:20 final size:20
Alignment explanation
Indices: 105992874--105992932 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
105992864 TAAATATGGT
105992874 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
105992894 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
105992914 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
105992933 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:105992914 original size:11 final size:11
Alignment explanation
Indices: 105992878--105992932 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
105992868 TATGGTATGT
105992878 ATGATATGCAC
1 ATGATATGCAC
* *
105992889 ATGAAATG--T
1 ATGATATGCAC
105992898 ATGATATGCAC
1 ATGATATGCAC
*
105992909 ATGATATG--T
1 ATGATATGCAC
105992918 ATGATATGCAC
1 ATGATATGCAC
105992929 ATGA
1 ATGA
105992933 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:105993083 original size:47 final size:47
Alignment explanation
Indices: 105992983--105993125 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
105992973 GAGGAAGTGA
*
105992983 AAAAGGGCTTATGCCCCAGTTATCTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
105993031 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
105993078 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
105993126 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 42 0.48
48 34 0.39
49 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:105993099 original size:71 final size:72
Alignment explanation
Indices: 105992983--105993126 Score: 222
Period size: 71 Copynumber: 2.0 Consensus size: 72
105992973 GAGGAAGTGA
*
105992983 AAAAGGGCTTATGCCCCAGTTATCTAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCTAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
105993046 CCAGTTAT
65 CCAGTTAT
* *
105993054 AAAAGGGCTTATGCCCCAGTTAT-TGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCT
1 AAAAGGGCTTATGCCCCAGTTATCT-AAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCT
105993118 CCAGTTAT
65 CCAGTTAT
105993126 A
1 A
105993127 TGATAAAGCA
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
70 1 0.01
71 54 0.81
72 12 0.18
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCTAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:105993106 original size:24 final size:24
Alignment explanation
Indices: 105992983--105993125 Score: 202
Period size: 24 Copynumber: 6.0 Consensus size: 24
105992973 GAGGAAGTGA
105992983 AAAAGGGCTTATGCCCCAGTTATCT
1 AAAAGGGCTTATGCCCCAGTTAT-T
*
105993008 -AAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
105993031 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
105993054 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
105993078 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
105993102 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
105993126 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
23 22 0.21
24 74 0.69
25 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:105993352 original size:31 final size:31
Alignment explanation
Indices: 105993317--105993380 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
105993307 CGTTTACAGT
105993317 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
105993348 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
105993379 AA
1 AA
105993381 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:106013753 original size:38 final size:37
Alignment explanation
Indices: 106013697--106013802 Score: 131
Period size: 37 Copynumber: 2.8 Consensus size: 37
106013687 TGTAACGTTA
* *
106013697 ATTCAGGCTTTGTGCCTAGTAGGCTTTGTGCCGATGAT
1 ATTCGGGCTTTGTGCCTAGTAGGCTTTGTGCAG-TGAT
* *
106013735 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGTAGTGAT
1 ATTCGGGCTTTGTGCCTAGTAGGCTTTGTGCAGTGAT
* * * *
106013772 ATTTGAGCTCTATGCCTAGTAGGCTTTGTGC
1 ATTCGGGCTTTGTGCCTAGTAGGCTTTGTGC
106013803 TGGTGTAATT
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
37 29 0.50
38 29 0.50
ACGTcount: A:0.15, C:0.18, G:0.29, T:0.38
Consensus pattern (37 bp):
ATTCGGGCTTTGTGCCTAGTAGGCTTTGTGCAGTGAT
Found at i:106014133 original size:62 final size:62
Alignment explanation
Indices: 106014058--106014181 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
106014048 GATTATGTAT
106014058 TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
1 TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
106014120 TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
1 TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
106014182 ATTATGAGTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.40
Consensus pattern (62 bp):
TACGACTTATAAATCCTAGTATGTTATATATGAAAGGTATATGTGATCTTTTAATATACTCA
Found at i:106018944 original size:16 final size:16
Alignment explanation
Indices: 106018923--106018987 Score: 67
Period size: 16 Copynumber: 3.7 Consensus size: 16
106018913 TGTTAATTCG
106018923 GGCTTTGTGCCTATCA
1 GGCTTTGTGCCTATCA
106018939 GGCTTTGTGCCAATGATATTCA
1 GGCTTTGTGCC-----TA-TCA
*
106018961 GGCTTTGTGCCTAGCA
1 GGCTTTGTGCCTATCA
106018977 GGCTTTGTGCC
1 GGCTTTGTGCC
106018988 AATGATATTC
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
16 24 0.57
17 2 0.05
21 2 0.05
22 14 0.33
ACGTcount: A:0.14, C:0.23, G:0.28, T:0.35
Consensus pattern (16 bp):
GGCTTTGTGCCTATCA
Found at i:106018964 original size:22 final size:22
Alignment explanation
Indices: 106018936--106019029 Score: 92
Period size: 22 Copynumber: 4.5 Consensus size: 22
106018926 TTTGTGCCTA
106018936 TCAGGCTTTGTGCCAATGATAT
1 TCAGGCTTTGTGCCAATGATAT
106018958 TCAGGCTTTGTGCC-----TA-
1 TCAGGCTTTGTGCCAATGATAT
*
106018974 GCAGGCTTTGTGCCAATGATAT
1 TCAGGCTTTGTGCCAATGATAT
* * *
106018996 TCGGGCTCTGTGCCAGTGATAT
1 TCAGGCTTTGTGCCAATGATAT
* *
106019018 TCGGGCTCTGTG
1 TCAGGCTTTGTG
106019030 GCTAGCAGGC
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
16 13 0.21
17 2 0.03
21 2 0.03
22 44 0.72
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.34
Consensus pattern (22 bp):
TCAGGCTTTGTGCCAATGATAT
Found at i:106018979 original size:38 final size:38
Alignment explanation
Indices: 106018918--106019009 Score: 157
Period size: 38 Copynumber: 2.4 Consensus size: 38
106018908 GGTAATGTTA
*
106018918 ATTCGGGCTTTGTGCCTATCAGGCTTTGTGCCAATGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCAATGAT
*
106018956 ATTCAGGCTTTGTGCCTAGCAGGCTTTGTGCCAATGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCAATGAT
*
106018994 ATTCGGGCTCTGTGCC
1 ATTCGGGCTTTGTGCC
106019010 AGTGATATTC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (38 bp):
ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCAATGAT
Found at i:106020232 original size:27 final size:28
Alignment explanation
Indices: 106020195--106020334 Score: 157
Period size: 27 Copynumber: 5.2 Consensus size: 28
106020185 AGCATGGCTG
* *
106020195 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
106020221 CCAGATACAGATA-ATCGTGGCAGGGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
* *
106020249 CTAGA-ACAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
106020276 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
106020303 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
106020330 CCAGA
1 CCAGA
106020335 ACGCTTCCTC
Statistics
Matches: 102, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
26 5 0.05
27 83 0.81
28 14 0.14
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:106020286 original size:54 final size:55
Alignment explanation
Indices: 106020195--106020334 Score: 185
Period size: 54 Copynumber: 2.6 Consensus size: 55
106020185 AGCATGGCTG
* * * *
106020195 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
106020249 CTAGAACAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* *
106020303 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATTTGTGGCAGAGCCACCAGA
106020335 ACGCTTCCTC
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 58 0.77
55 17 0.23
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (55 bp):
CCAGAACAGATATTTGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:106020466 original size:26 final size:27
Alignment explanation
Indices: 106020437--106020512 Score: 100
Period size: 26 Copynumber: 2.8 Consensus size: 27
106020427 CAAAATTAAC
106020437 CCTAGGGGTATAACAGTAATTTT-ACA
1 CCTAGGGGTATAACAGTAATTTTCACA
*
106020463 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAACAGTAATTTT-CACA
* * *
106020491 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAACAGTAATTT
106020513 AGCTACTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 23 0.52
28 21 0.48
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTCACA
Found at i:106021989 original size:26 final size:26
Alignment explanation
Indices: 106021953--106022062 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
106021943 CATGAAATTC
106021953 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
106021979 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
106022005 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
106022031 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
106022057 TTATCA
1 TTATCA
106022063 ATTGGTACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:106032911 original size:27 final size:28
Alignment explanation
Indices: 106032880--106032939 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
106032870 TGTTCGAGTT
* *
106032880 AATTTTT-TAAAAAATTATTTTCTTTAA
1 AATTTTTCAAAAAAATAATTTTCTTTAA
106032907 AATTTTTCAAAAAAATAATTTTCTTTAA
1 AATTTTTCAAAAAAATAATTTTCTTTAA
106032935 AATTT
1 AATTT
106032940 CTAAACATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 7 0.23
28 23 0.77
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (28 bp):
AATTTTTCAAAAAAATAATTTTCTTTAA
Found at i:106034001 original size:3 final size:3
Alignment explanation
Indices: 106033986--106034020 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
106033976 ATTTTGATGT
* *
106033986 GAA GAA AAA GAA GAA GAA GAA AAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
106034021 GAGTTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:106034006 original size:15 final size:15
Alignment explanation
Indices: 106033986--106034020 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
106033976 ATTTTGATGT
106033986 GAAGAAAAAGAAGAA
1 GAAGAAAAAGAAGAA
106034001 GAAGAAAAAGAAGAA
1 GAAGAAAAAGAAGAA
106034016 GAAGA
1 GAAGA
106034021 GAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
GAAGAAAAAGAAGAA
Found at i:106034396 original size:9 final size:9
Alignment explanation
Indices: 106034382--106034413 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
106034372 TCGAGTTGAT
106034382 TCGATTAAC
1 TCGATTAAC
106034391 TCGATTAAC
1 TCGATTAAC
106034400 TCGATTAAC
1 TCGATTAAC
106034409 TCGAT
1 TCGAT
106034414 CCGAATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (9 bp):
TCGATTAAC
Found at i:106043822 original size:15 final size:15
Alignment explanation
Indices: 106043802--106043839 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
106043792 GATTCACTCA
*
106043802 CTTTGAGCAGCAGTG
1 CTTTGAGCAGCAATG
106043817 CTTTGAGCAGCAATG
1 CTTTGAGCAGCAATG
106043832 CTTTGAGC
1 CTTTGAGC
106043840 GGTTCGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (15 bp):
CTTTGAGCAGCAATG
Found at i:106043968 original size:6 final size:6
Alignment explanation
Indices: 106043949--106043989 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
106043939 TTTGAGTCCC
* *
106043949 TTTA-T TTTACT TTTATT TTTATT TTTA-T TTTATT TTAATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
106043990 CAATTCTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
5 9 0.28
6 23 0.72
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:106043971 original size:17 final size:16
Alignment explanation
Indices: 106043949--106043989 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
106043939 TTTGAGTCCC
106043949 TTTATTTTACTTTTATT
1 TTTATTTTA-TTTTATT
106043966 TTTATTTTTATTTTATT
1 TTTA-TTTTATTTTATT
*
106043983 TTAATTT
1 TTTATTT
106043990 CAATTCTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 14 0.64
18 5 0.23
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTTTATTTTATT
Found at i:106048030 original size:2 final size:2
Alignment explanation
Indices: 106048023--106048057 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
106048013 AGCCAAATTG
106048023 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
106048058 TATATATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:106048566 original size:46 final size:46
Alignment explanation
Indices: 106048490--106048622 Score: 167
Period size: 46 Copynumber: 2.9 Consensus size: 46
106048480 TTAATATTAT
* * * *
106048490 TGTATTCTCGAGTTTACAACATATGTAGGAGCTCAGAACCTAAACC
1 TGTATTCTCGAGTCTGCAACACATGCAGGAGCTCAGAACCTAAACC
* * **
106048536 TGTATTCTTGAGTCTGCAACACATGCAGGAGCTCAAAACCTATTCC
1 TGTATTCTCGAGTCTGCAACACATGCAGGAGCTCAGAACCTAAACC
* * *
106048582 TATATTCTCGAGTCCGCAACACGTGCAGGAGCTCAGAACCT
1 TGTATTCTCGAGTCTGCAACACATGCAGGAGCTCAGAACCT
106048623 GCGCAAAAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (46 bp):
TGTATTCTCGAGTCTGCAACACATGCAGGAGCTCAGAACCTAAACC
Found at i:106054864 original size:2 final size:2
Alignment explanation
Indices: 106054857--106054897 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
106054847 AAAAGAGTAG
*
106054857 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106054898 AAAATTATCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:106062307 original size:17 final size:17
Alignment explanation
Indices: 106062285--106062318 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
106062275 TTAAATTGAA
106062285 AGAAATCATAAGTTGGC
1 AGAAATCATAAGTTGGC
106062302 AGAAATCATAAGTTGGC
1 AGAAATCATAAGTTGGC
106062319 GGTTTCTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
AGAAATCATAAGTTGGC
Found at i:106063428 original size:27 final size:28
Alignment explanation
Indices: 106063398--106063454 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
106063388 GGTAAAACCA
106063398 CCGAATAA-AAATAATGCAG-TAAAATTG
1 CCGAATAACAAATAATG-AGATAAAATTG
*
106063425 CCGAATAACAAATAATGAGATATAATTG
1 CCGAATAACAAATAATGAGATAAAATTG
106063453 CC
1 CC
106063455 AATCCCTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.23
Consensus pattern (28 bp):
CCGAATAACAAATAATGAGATAAAATTG
Found at i:106063603 original size:17 final size:17
Alignment explanation
Indices: 106063581--106063616 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
106063571 ATAATTTCAC
106063581 ATACTTTTACGA-ATTTA
1 ATACTTTTAC-ATATTTA
106063598 ATACTTTTACATATTTA
1 ATACTTTTACATATTTA
106063615 AT
1 AT
106063617 TGACATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.06
17 17 0.94
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.50
Consensus pattern (17 bp):
ATACTTTTACATATTTA
Found at i:106073364 original size:19 final size:18
Alignment explanation
Indices: 106073340--106073382 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
106073330 ACCATGTTTA
106073340 TATTTTA-ACACATGTTAAT
1 TATTTTATA-ACAT-TTAAT
*
106073359 TATTTTATAATATTTAAT
1 TATTTTATAACATTTAAT
106073377 TATTTT
1 TATTTT
106073383 TCGACAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 11 0.50
19 10 0.45
20 1 0.05
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (18 bp):
TATTTTATAACATTTAAT
Found at i:106076238 original size:30 final size:29
Alignment explanation
Indices: 106076204--106076261 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
106076194 CTTTTGAAAA
* *
106076204 TATTTACAAAAAGAGGCATCTAGTTTTTAT
1 TATTTACAAAAAGA-GCAACTAGATTTTAT
*
106076234 TATTTACGAAAAGAGCAACTAGATTTTA
1 TATTTACAAAAAGAGCAACTAGATTTTA
106076262 AAAATGATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (29 bp):
TATTTACAAAAAGAGCAACTAGATTTTAT
Found at i:106078307 original size:24 final size:24
Alignment explanation
Indices: 106078275--106078361 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
106078265 AATCTCAAAT
106078275 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
106078299 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
106078323 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
106078347 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
106078362 ACATAATAAG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:106078327 original size:48 final size:48
Alignment explanation
Indices: 106078275--106078383 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
106078265 AATCTCAAAT
** *
106078275 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
*
106078323 GCACTATGTGTGCGATTTACTATGGCGCTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
106078371 GCACTATGTGTGC
1 GCACTATGTGTGC
106078384 AACGTTTGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 51 0.91
49 5 0.09
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:106090756 original size:55 final size:55
Alignment explanation
Indices: 106090631--106090756 Score: 121
Period size: 55 Copynumber: 2.3 Consensus size: 55
106090621 AAGCCTACCA
* * * * *
106090631 AAAC-AACACGGGCGTGCGACATGCCCGTGTGGAAGACCCGTGGTTGAAACTGAG
1 AAACTAACACGGGCGTGAGACACGCCCGTGTCGAACACCCGTGGTTCAAACTGAG
* ** * **
106090685 AAACTAGCACAAGCGTGAGACACGCCCGTGTCTAACACCCGTGG-TCAAACCTGTT
1 AAACTAACACGGGCGTGAGACACGCCCGTGTCGAACACCCGTGGTTCAAA-CTGAG
*
106090740 AAATTAACACGGGCGTG
1 AAACTAACACGGGCGTG
106090757 GGGCTTGTAC
Statistics
Matches: 55, Mismatches: 15, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
54 8 0.15
55 47 0.85
ACGTcount: A:0.29, C:0.26, G:0.28, T:0.17
Consensus pattern (55 bp):
AAACTAACACGGGCGTGAGACACGCCCGTGTCGAACACCCGTGGTTCAAACTGAG
Found at i:106099810 original size:13 final size:13
Alignment explanation
Indices: 106099792--106099819 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
106099782 CTGGACTTTC
106099792 TCACACGGCCGTG
1 TCACACGGCCGTG
106099805 TCACACGGCCGTG
1 TCACACGGCCGTG
106099818 TC
1 TC
106099820 CCTTTGGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.39, G:0.29, T:0.18
Consensus pattern (13 bp):
TCACACGGCCGTG
Found at i:106118680 original size:36 final size:36
Alignment explanation
Indices: 106118633--106118708 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
106118623 AGAGCATATA
*
106118633 TGTCTGAGGCATTTCATCATGTTTGGATATATTACC
1 TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
106118669 TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
1 TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
106118705 TGTC
1 TGTC
106118709 CTTTGACATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (36 bp):
TGTCTGAGGCATTTCATCACGTTTGGATATATTACC
Found at i:106125406 original size:2 final size:2
Alignment explanation
Indices: 106125399--106125427 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
106125389 AACCATCCAC
106125399 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106125428 AGAATTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106130966 original size:30 final size:30
Alignment explanation
Indices: 106130916--106131073 Score: 163
Period size: 30 Copynumber: 5.3 Consensus size: 30
106130906 TTAGTGAGTT
* *
106130916 ACACGGCTGGTTGCCACGACCGTGTGACCC
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
* **
106130946 ACATGGCTAGTTGGCACGACCGTGTGACCC
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
* *
106130976 ACACGGCCGGTTGGTACGATCGTGTGACCC
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
* * *
106131006 ACACAGCCGGTTGGCACGACCGAGTGACCA
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
* * * * ** *
106131036 ACATGGCCTGTTGGAACAACTATGTGACCT
1 ACACGGCCGGTTGGCACGACCGTGTGACCC
106131066 ACACGGCC
1 ACACGGCC
106131074 TGGACACACG
Statistics
Matches: 105, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 105 1.00
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.18
Consensus pattern (30 bp):
ACACGGCCGGTTGGCACGACCGTGTGACCC
Found at i:106132074 original size:3 final size:3
Alignment explanation
Indices: 106132055--106132192 Score: 85
Period size: 3 Copynumber: 46.0 Consensus size: 3
106132045 TATGTATTTC
* *
106132055 TTA TATA TTA TTG TTA TTA TTA GTTA -GA TTA TT- TTA TT- TCT- TTA
1 TTA T-TA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T-TA TTA
* *
106132099 TTGA TTA TTA TTA TTC TTA TATA TTA TTA TTA TTA TTA GTTA -GA TTA
1 TT-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA -TTA TTA TTA
* * *
106132146 TT- TTA TT- TCT- TTA TTGA TTA TTA TTA TTC TTA GTA TTA TTC TTA
1 TTA TTA TTA T-TA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
106132190 TTA
1 TTA
106132193 ATCATTTTTC
Statistics
Matches: 107, Mismatches: 14, Indels: 28
0.72 0.09 0.19
Matches are distributed among these distances:
2 10 0.09
3 79 0.74
4 18 0.17
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:106132121 original size:60 final size:60
Alignment explanation
Indices: 106132052--106132192 Score: 248
Period size: 60 Copynumber: 2.4 Consensus size: 60
106132042 ATTTATGTAT
*
106132052 TTCTTATATATTATTGTTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
1 TTCTTATATATTATTATTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
106132112 TTCTTATATATTATTATTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
1 TTCTTATATATTATTATTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
* *
106132172 TTCTTA-GTATTATTCTTATTA
1 TTCTTATATATTATTATTATTA
106132193 ATCATTTTTC
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
59 13 0.17
60 65 0.83
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (60 bp):
TTCTTATATATTATTATTATTATTAGTTAGATTATTTTATTTCTTTATTGATTATTATTA
Found at i:106132125 original size:16 final size:16
Alignment explanation
Indices: 106132055--106132134 Score: 57
Period size: 16 Copynumber: 5.2 Consensus size: 16
106132045 TATGTATTTC
*
106132055 TTATATATTATTGTTA
1 TTATATATTATTATTA
*
106132071 TTAT-TAGTTA-GATTA
1 TTATATA-TTATTATTA
106132086 TT-T-TATT-TCT-TTA
1 TTATATATTAT-TATTA
*
106132099 TTGAT-TATTATTATTC
1 TT-ATATATTATTATTA
106132115 TTATATATTATTATTA
1 TTATATATTATTATTA
106132131 TTAT
1 TTAT
106132135 TAGTTAGATT
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
13 7 0.14
14 3 0.06
15 15 0.29
16 26 0.51
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.64
Consensus pattern (16 bp):
TTATATATTATTATTA
Found at i:106132173 original size:41 final size:40
Alignment explanation
Indices: 106132101--106132191 Score: 109
Period size: 38 Copynumber: 2.3 Consensus size: 40
106132091 TTTCTTTATT
106132101 GATTATTATTATTCTTATATATTATTATTATTATTAGTTA
1 GATTATTATTATTCTTATATATTATTATTATTATTAGTTA
* *
106132141 GATTATT-TTATTTCTT-TAT-TGATTATTATTATT-CTTA
1 GATTATTATTA-TTCTTATATATTATTATTATTATTAGTTA
*
106132178 GTATTATTCTTATT
1 G-ATTATTATTATT
106132192 AATCATTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
37 4 0.09
38 21 0.46
39 9 0.20
40 12 0.26
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.63
Consensus pattern (40 bp):
GATTATTATTATTCTTATATATTATTATTATTATTAGTTA
Found at i:106132378 original size:8 final size:8
Alignment explanation
Indices: 106132365--106132393 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
106132355 AATAATTCTT
106132365 AATTTCAC
1 AATTTCAC
106132373 AATTTCAC
1 AATTTCAC
106132381 AATTTCAC
1 AATTTCAC
106132389 AATTT
1 AATTT
106132394 GCCTTTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (8 bp):
AATTTCAC
Found at i:106147471 original size:10 final size:10
Alignment explanation
Indices: 106147456--106147480 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
106147446 TATTAAAATG
106147456 AATTTTAATT
1 AATTTTAATT
106147466 AATTTTAATT
1 AATTTTAATT
106147476 AATTT
1 AATTT
106147481 ATGATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:106164177 original size:15 final size:15
Alignment explanation
Indices: 106164157--106164186 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
106164147 CGAGAGAGAT
106164157 AATAATATAACTTAG
1 AATAATATAACTTAG
106164172 AATAATATAACTTAG
1 AATAATATAACTTAG
106164187 GGATTTCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (15 bp):
AATAATATAACTTAG
Found at i:106166881 original size:21 final size:20
Alignment explanation
Indices: 106166855--106166904 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
106166845 GTCGTGTAGA
* *
106166855 CCATGTGAAGGCTACACATGC
1 CCATGTGAAGG-GACACACGC
106166876 CCATGTGGAAGGGACACACGC
1 CCATGT-GAAGGGACACACGC
*
106166897 CTATGTGA
1 CCATGTGA
106166905 GTAGCCCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 18 0.72
22 5 0.20
ACGTcount: A:0.28, C:0.26, G:0.28, T:0.18
Consensus pattern (20 bp):
CCATGTGAAGGGACACACGC
Found at i:106169423 original size:22 final size:23
Alignment explanation
Indices: 106169398--106169441 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
106169388 CTCAATAAAG
* *
106169398 AATCTCAACCCAAAAG-TGTCTA
1 AATCCCAACCAAAAAGTTGTCTA
*
106169420 AATCCCATCCAAAAAGTTGTCT
1 AATCCCAACCAAAAAGTTGTCT
106169442 CAATTTGAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.25
Consensus pattern (23 bp):
AATCCCAACCAAAAAGTTGTCTA
Found at i:106170733 original size:285 final size:288
Alignment explanation
Indices: 106170214--106170759 Score: 911
Period size: 285 Copynumber: 1.9 Consensus size: 288
106170204 TAGTGCAAAT
* *
106170214 ATTTTAAGGGTGGAATGATCTAGAAACTAAGGAAAATGGATGAATTAGGACTAAATTGAATAGGA
1 ATTTTAAGGGTGGAATGATCTACAAACTAAGAAAAATGGATGAATTAGGACTAAATTGAATAGGA
*
106170279 AAAGAATTATGAGGAACTAAATTATAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTT
66 AAAGAATTATGAGG------ATCATAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTT
*
106170344 AAAAGATCACAAAGGGCAAAATGGTCAATCAGAAGAGGGAGAAAGCTAGAAAGTAATGATGATGT
125 AAAAGATCACAAAGGGCAAAATGGTCAATCAGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGT
106170409 TGATGATATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTT
190 TGATGATATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTT
106170474 ATTATTTTATTATTATTTATTAAATATAAAAGGA
255 ATTATTTTATTATTATTTATTAAATATAAAAGGA
*
106170508 ATTTTAAGGGTGGAATGATCTACAAACTAAGAAAAATGGATGAATTGGGACTAAATTGAATAGGA
1 ATTTTAAGGGTGGAATGATCTACAAACTAAGAAAAATGGATGAATTAGGACTAAATTGAATAGGA
*
106170573 AAAGAATTAT-A-G-TCGTAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTTAAAAGA
66 AAAGAATTATGAGGATCATAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTTAAAAGA
* * *
106170635 TCACAAAGGGCAAAATGTTCAA-CTGGAAGAGAGAGAAATCTAGAAAGTAATGATGATGTTGATG
131 TCACAAAGGGCAAAATGGTCAATC-AGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGTTGATG
*
106170699 ATATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAGTAAGATATTTTA
195 ATATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTTA
106170760 ATAAGATATT
Statistics
Matches: 241, Mismatches: 10, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
284 1 0.00
285 166 0.69
292 1 0.00
293 1 0.00
294 72 0.30
ACGTcount: A:0.43, C:0.05, G:0.17, T:0.35
Consensus pattern (288 bp):
ATTTTAAGGGTGGAATGATCTACAAACTAAGAAAAATGGATGAATTAGGACTAAATTGAATAGGA
AAAGAATTATGAGGATCATAATTTTATCAAATTATGTGATGATTCAATGATAAAATTTTAAAAGA
TCACAAAGGGCAAAATGGTCAATCAGAAGAGAGAGAAAGCTAGAAAGTAATGATGATGTTGATGA
TATTTTATAATTATTAATTAGATAAATATTATTTTATTAATATTTTAATAAGATATTTTATTATT
TTATTATTATTTATTAAATATAAAAGGA
Found at i:106170743 original size:11 final size:12
Alignment explanation
Indices: 106170729--106170773 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
106170719 AGATAAATAT
*
106170729 TATTTTATTA-A
1 TATTTTATAAGA
106170740 TATTTTAGTAAGA
1 TATTTTA-TAAGA
106170753 TATTTTAATAAGA
1 TATTTT-ATAAGA
106170766 TATTTTAT
1 TATTTTAT
106170774 TATTTTACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 7 0.23
12 4 0.13
13 18 0.60
14 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (12 bp):
TATTTTATAAGA
Found at i:106170757 original size:13 final size:13
Alignment explanation
Indices: 106170739--106170772 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
106170729 TATTTTATTA
*
106170739 ATATTTTAGTAAG
1 ATATTTTAATAAG
106170752 ATATTTTAATAAG
1 ATATTTTAATAAG
106170765 ATATTTTA
1 ATATTTTA
106170773 TTATTTTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (13 bp):
ATATTTTAATAAG
Found at i:106172859 original size:24 final size:24
Alignment explanation
Indices: 106172831--106172882 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
106172821 TTAGTAGGTC
*
106172831 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATGCT
* *
106172855 AAATATATTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATGCT
106172879 AAAT
1 AAAT
106172883 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATGCT
Found at i:106177132 original size:40 final size:40
Alignment explanation
Indices: 106177075--106177152 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
106177065 TGCAATACCT
* * *
106177075 TATGGTGTGTAGGGATGGACGGGTCAATTTTATCCCCATA
1 TATGGTGTGCAGAGATGGACAGGTCAATTTTATCCCCATA
** *
106177115 TATGGTGTGCAGAGATGGGTAGGTCGATTTTATCCCCA
1 TATGGTGTGCAGAGATGGACAGGTCAATTTTATCCCCA
106177153 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (40 bp):
TATGGTGTGCAGAGATGGACAGGTCAATTTTATCCCCATA
Found at i:106184240 original size:40 final size:38
Alignment explanation
Indices: 106184188--106184281 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 38
106184178 TTGCAATGCA
*
106184188 ATCCCT-TATGGTGTGTAGGAATGGACGGGTCGATTTT
1 ATCCCTATATGGTGTGTAGGAATGGACGGATCGATTTT
** * **
106184225 ATCCCCATATATGGTGTACAGGGATGGGTGGATCGATTTT
1 AT-CCC-TATATGGTGTGTAGGAATGGACGGATCGATTTT
*
106184265 ATCCCTACATGGTGTGT
1 ATCCCTATATGGTGTGT
106184282 TGGGTTAGAC
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
37 2 0.04
38 12 0.27
39 4 0.09
40 27 0.60
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (38 bp):
ATCCCTATATGGTGTGTAGGAATGGACGGATCGATTTT
Found at i:106189517 original size:14 final size:14
Alignment explanation
Indices: 106189498--106189525 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106189488 TAAATACTTG
106189498 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
106189512 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
106189526 CTTGCTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (14 bp):
ATTTGTTCTTAATT
Found at i:106199241 original size:27 final size:28
Alignment explanation
Indices: 106199211--106199300 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
106199201 TTTAGTTTAC
106199211 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
106199238 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
106199265 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
106199292 TAAAATTAC
1 TAAAATTAC
106199301 TAAAGTACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:106199278 original size:54 final size:54
Alignment explanation
Indices: 106199211--106199317 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
106199201 TTTAGTTTAC
* *
106199211 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACT-AAAGTACCCCCGATTTG
* * *
106199265 TAAATTTACCGAAATACCTTCGACTTGTAAAATTACTAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTT
106199318 ACAGAATTAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 8 0.17
54 38 0.83
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG
Found at i:106199309 original size:27 final size:26
Alignment explanation
Indices: 106199235--106199310 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
106199225 TACCCTTAGT
* *
106199235 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACT-AAATACCCTCGAC
* * *
106199262 TTGTAAATTTACCGAAATACCTTCGAC
1 TTGTAAAATTA-CTAAATACCCTCGAC
106199289 TTGTAAAATTACTAAAGTACCC
1 TTGTAAAATTACTAAA-TACCC
106199311 CCGATTTACA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.87
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACTAAATACCCTCGAC
Found at i:106199328 original size:54 final size:53
Alignment explanation
Indices: 106199213--106199329 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 53
106199203 TAGTTTACTA
* * **
106199213 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCCCGATTTAC
* *
106199266 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTACT-AAAGTACCCCCGATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTGAAA-TACCCCCGATTTAC
106199320 AGAATTACCG
1 A-AATTACCG
106199330 TTTTACCCTT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
53 11 0.20
54 41 0.76
55 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTGAAATACCCCCGATTTAC
Found at i:106199336 original size:27 final size:27
Alignment explanation
Indices: 106199313--106199786 Score: 552
Period size: 27 Copynumber: 17.6 Consensus size: 27
106199303 AAGTACCCCC
106199313 GATTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106199340 AATTTACATAATTATCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106199367 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106199394 GACTTACAGAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106199421 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106199448 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106199475 GACTTACAGAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106199502 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106199529 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106199556 GACTTACAGAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106199583 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * * * *
106199610 AATTTACATAATTATCGTTTTACTCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106199637 GACTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106199664 GATTTACTGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* **
106199691 GATTTATAGAATTACTATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106199718 GATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106199745 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
*
106199772 GATTTACAAAATTAC
1 GATTTACAGAATTAC
106199787 TAAAATACCC
Statistics
Matches: 390, Mismatches: 57, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 390 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.42
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTT
Found at i:106199795 original size:27 final size:27
Alignment explanation
Indices: 106199684--106199935 Score: 118
Period size: 27 Copynumber: 9.3 Consensus size: 27
106199674 ATTACTGTTT
* * ***
106199684 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* * ****
106199711 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ****
106199738 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
106199765 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *** *
106199792 TACCCTTGGTTTGTGAAATTATCGAAAA
1 TACCCTTGATTTACAAAATTA-CTAAAA
** ** *
106199820 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
106199846 TACGCC-TAATTTACAAAGTTAC-AGAAA
1 TAC-CCTTGATTTACAAAATTACTA-AAA
106199873 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
106199902 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
106199929 TACCCTT
1 TACCCTT
106199936 AGTTTGTAGA
Statistics
Matches: 185, Mismatches: 29, Indels: 22
0.78 0.12 0.09
Matches are distributed among these distances:
26 8 0.04
27 144 0.78
28 14 0.08
29 19 0.10
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.37
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:106199799 original size:81 final size:81
Alignment explanation
Indices: 106199306--106199785 Score: 698
Period size: 81 Copynumber: 5.9 Consensus size: 81
106199296 ATTACTAAAG
* * * * *
106199306 TACCCCCGATTTACAGAATTACCGTTTTACCCTTAATTTACATAATTATCGTTTTACCCTTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
106199371 TACATAATTATCGTTT
66 TACATAATTATCGTTT
106199387 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
106199452 TACATAATTATCGTTT
66 TACATAATTATCGTTT
106199468 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
106199533 TACATAATTATCGTTT
66 TACATAATTATCGTTT
*
106199549 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTAATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
106199614 TACATAATTATCGTTT
66 TACATAATTATCGTTT
* * * *
106199630 TACTCTCGACTTACAGAATTACCGTTTTA-CCCTCGATTTAC-TGAATTACTGTTTTACCCTTGA
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCT-AATTTACAT-AATTACCGTTTTACCCCTGA
* * *
106199693 TTTATAGAATTA-CTATTT
64 TTTACATAATTATC-GTTT
* * * * * * * *
106199711 TACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTA-CCCTCGAT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCT-GAT
*
106199775 TTACAAAATTA
65 TTACATAATTA
106199786 CTAAAATACC
Statistics
Matches: 369, Mismatches: 24, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
80 9 0.02
81 357 0.97
82 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
TACATAATTATCGTTT
Found at i:106199824 original size:81 final size:81
Alignment explanation
Indices: 106199658--106199830 Score: 179
Period size: 81 Copynumber: 2.1 Consensus size: 81
106199648 TTACCGTTTT
* * * * ***
106199658 ACCCTCGATTTACTGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTT
1 ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
****
106199723 ATAGAATTACTGTTTT
66 ATAGAATTACTGAAAA
* *
106199739 ACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTT
1 ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
*
106199804 GT-GAAATTA-TCGAAAA
66 ATAG-AATTACT-GAAAA
*
106199820 ACCCTCAATTT
1 ACCCTCGATTT
106199831 GTAAAATTAC
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
80 2 0.03
81 72 0.97
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (81 bp):
ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
ATAGAATTACTGAAAA
Found at i:106200058 original size:27 final size:27
Alignment explanation
Indices: 106199994--106200058 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
106199984 ATCCCTATTA
*
106199994 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
106200021 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
106200048 GGTAAAATGAC
1 GGTAAAATGAC
106200059 GAATATGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:106201240 original size:25 final size:25
Alignment explanation
Indices: 106201211--106201258 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
106201201 TTATAATATG
* *
106201211 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
106201236 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
106201259 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:106201320 original size:20 final size:20
Alignment explanation
Indices: 106201295--106201365 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
106201285 ATTTTGATAA
106201295 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
106201315 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
106201335 ACATGATATGTATGATACGC
1 ACATGATATGTATGATATGC
*
106201355 ACATGAGATGT
1 ACATGATATGT
106201366 TCATAAATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:106201442 original size:23 final size:23
Alignment explanation
Indices: 106201412--106201577 Score: 260
Period size: 23 Copynumber: 7.1 Consensus size: 23
106201402 AGGAAGTGCA
106201412 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
106201435 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
106201458 AAAGGGTTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
106201482 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
106201505 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
106201529 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
106201552 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
106201575 AAA
1 AAA
106201578 AGAGGCAAGG
Statistics
Matches: 130, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
23 89 0.68
24 41 0.32
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:106201502 original size:47 final size:47
Alignment explanation
Indices: 106201412--106201579 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
106201402 AGGAAGTGCA
*
106201412 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
106201458 AAAGGGTTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
106201505 AAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
106201552 AAAGGGCTTTTGCCCCAGTTATTAAAAG
1 AAAGGGCTTATGCCCCAGTTATCAAAAG
106201580 AGGCAAGGCC
Statistics
Matches: 113, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
46 21 0.19
47 92 0.81
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:106201523 original size:70 final size:71
Alignment explanation
Indices: 106201410--106201577 Score: 268
Period size: 70 Copynumber: 2.4 Consensus size: 71
106201400 GGAGGAAGTG
* * * *
106201410 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-TAAAGGGTTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTACGCCCC
106201474 AGTTAT
66 AGTTAT
106201480 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTACGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTACGCCCC
106201545 AGTTAT
66 AGTTAT
* *
106201551 -TAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
106201578 AGAGGCAAGG
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
70 71 0.78
71 20 0.22
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTACGCCCC
AGTTAT
Done.