Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 343 of 425
Found at i:106201782 original size:42 final size:42
Alignment explanation
Indices: 106201719--106201810 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
106201709 TAGTCTCCCC
* **
106201719 AAATGGGTTTGCATACATTCATTGGTATT-TCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTAT-ATGTGATATTG
* *
106201761 AAATGGGCTTGCATTCTTTCATTGACATTATATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTATATGTGATATTG
106201803 AAATGGGC
1 AAATGGGC
106201811 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTATATGTGATATTG
Found at i:106204536 original size:27 final size:28
Alignment explanation
Indices: 106204506--106204595 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
106204496 TTTAGTTTAC
106204506 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
106204533 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
106204560 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
106204587 TAAAATTAC
1 TAAAATTAC
106204596 TAAAGTACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:106204573 original size:54 final size:54
Alignment explanation
Indices: 106204506--106204624 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
106204496 TTTAGTTTAC
* *
106204506 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACT-AAAGTACCCCCGATTTG
* * * *
106204560 TAAATTTACCGAAATACCTTCGACTTGTAAAATTACTAAAGTACCCCCGATTTA
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG
*
106204614 CAAAATTACCG
1 TAAAATTACCG
106204625 TTTTACCCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 8 0.15
54 47 0.85
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG
Found at i:106204604 original size:27 final size:26
Alignment explanation
Indices: 106204530--106204605 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
106204520 TACCCTTAGT
* *
106204530 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACT-AAATACCCTCGAC
* * *
106204557 TTGTAAATTTACCGAAATACCTTCGAC
1 TTGTAAAATTA-CTAAATACCCTCGAC
106204584 TTGTAAAATTACTAAAGTACCC
1 TTGTAAAATTACTAAA-TACCC
106204606 CCGATTTACA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.87
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACTAAATACCCTCGAC
Found at i:106204631 original size:27 final size:27
Alignment explanation
Indices: 106204608--106205082 Score: 536
Period size: 27 Copynumber: 17.6 Consensus size: 27
106204598 AAGTACCCCC
*
106204608 GATTTACAAAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* * * *
106204635 AATTTACATAATTATCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106204662 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106204689 GACTTACAGAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106204716 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106204743 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
*
106204770 GACTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106204797 AATTTACATAATTACCGTTTTAACCCCT
1 GATTTACAGAATTACCGTTTT-ACCCTT
* * *
106204825 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106204852 GACTTACAGAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * *
106204879 AATTTACATAATTACCGTTTTACCCCT
1 GATTTACAGAATTACCGTTTTACCCTT
* * * * *
106204906 AATTTACATAATTATCGTTTTACTCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106204933 GACTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106204960 GATTTACTGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* **
106204987 GATTTATAGAATTACTATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106205014 GATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTT
* *
106205041 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTT
*
106205068 GATTTACAAAATTAC
1 GATTTACAGAATTAC
106205083 TAAAATACCC
Statistics
Matches: 388, Mismatches: 59, Indels: 2
0.86 0.13 0.00
Matches are distributed among these distances:
27 364 0.94
28 24 0.06
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTT
Found at i:106205091 original size:27 final size:27
Alignment explanation
Indices: 106204980--106205231 Score: 116
Period size: 27 Copynumber: 9.3 Consensus size: 27
106204970 ATTACTGTTT
* * ***
106204980 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* * ****
106205007 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ****
106205034 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
106205061 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *** *
106205088 TACCCTTGGTTTGTGAAATTATCGAAAA
1 TACCCTTGATTTACAAAATTA-CTAAAA
** * ** *
106205116 -ACCCTCAATATGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* * *
106205142 TACCCCTAATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
106205169 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
106205198 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
106205225 TACCCTT
1 TACCCTT
106205232 AGTTTGTAGA
Statistics
Matches: 183, Mismatches: 33, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
26 6 0.03
27 146 0.80
28 12 0.07
29 19 0.10
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:106205095 original size:81 final size:81
Alignment explanation
Indices: 106204601--106205081 Score: 698
Period size: 81 Copynumber: 5.9 Consensus size: 81
106204591 ATTACTAAAG
* * * *
106204601 TACCCCCGATTTACAAAATTACCGTTTTACCCTTAATTTACATAATTATCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTTAATTTACATAATTACCGTTTTACCCCTGATT
106204666 TACATAATTATCGTTT
66 TACATAATTATCGTTT
*
106204682 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTTAATTTACATAATTACCGTTTTACCCCTGATT
106204747 TACATAATTATCGTTT
66 TACATAATTATCGTTT
106204763 TACCCTCGACTTACAGAATTACCGTTTTACCCTTAATTTACATAATTACCGTTTTAACCCCTGAT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTTAATTTACATAATTACCGTTTT-ACCCCTGAT
106204828 TTACATAATTATCGTTT
65 TTACATAATTATCGTTT
* *
106204845 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTAATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTTAATTTACATAATTACCGTTTTACCCCTGATT
106204910 TACATAATTATCGTTT
66 TACATAATTATCGTTT
* ** * *
106204926 TACTCTCGACTTACAGAATTACCGTTTTACCCTCGATTTAC-TGAATTACTGTTTTACCCTTGAT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTTAATTTACAT-AATTACCGTTTTACCCCTGAT
* * *
106204990 TTATAGAATTA-CTATTT
65 TTACATAATTATC-GTTT
* * * * * * *
106205007 TACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTA-CCCTCGAT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCTTAATTTACATAATTACCGTTTTACCCCT-GAT
*
106205071 TTACAAAATTA
65 TTACATAATTA
106205082 CTAAAATACC
Statistics
Matches: 367, Mismatches: 28, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
80 5 0.01
81 282 0.77
82 80 0.22
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTACCGTTTTACCCTTAATTTACATAATTACCGTTTTACCCCTGATT
TACATAATTATCGTTT
Found at i:106205120 original size:81 final size:81
Alignment explanation
Indices: 106204954--106205121 Score: 178
Period size: 81 Copynumber: 2.1 Consensus size: 81
106204944 TTACCGTTTT
* * * * ***
106204954 ACCCTCGATTTACTGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTTGATTT
1 ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
****
106205019 ATAGAATTACTGTTTT
66 ATAGAATTACTGAAAA
* *
106205035 ACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTT
1 ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
*
106205100 GT-GAAATTA-TCGAAAA
66 ATAG-AATTACT-GAAAA
106205116 ACCCTC
1 ACCCTC
106205122 AATATGTAAA
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
80 2 0.03
81 68 0.97
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (81 bp):
ACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGATTT
ATAGAATTACTGAAAA
Found at i:106205354 original size:27 final size:27
Alignment explanation
Indices: 106205290--106205354 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
106205280 ATCCCTATTA
* *
106205290 GGTAAAAAGATCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
106205317 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
106205344 GGTAAAATGAC
1 GGTAAAATGAC
106205355 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:106206534 original size:25 final size:25
Alignment explanation
Indices: 106206505--106206552 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
106206495 TTATAATATG
* *
106206505 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
106206530 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
106206553 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:106206603 original size:9 final size:9
Alignment explanation
Indices: 106206591--106206647 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
106206581 TTTGATAAAC
106206591 ATGATATGT
1 ATGATATGT
*
106206600 ATGATATGCAC
1 ATGATATG--T
*
106206611 ATGACATGT
1 ATGATATGT
*
106206620 ATGATATGCAC
1 ATGATATG--T
106206631 ATGATATGT
1 ATGATATGT
106206640 ATGATATG
1 ATGATATG
106206648 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:106206614 original size:20 final size:20
Alignment explanation
Indices: 106206589--106206659 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
106206579 ATTTTGATAA
106206589 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
106206609 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
106206629 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
106206649 ACATGAGATGT
1 ACATGATATGT
106206660 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:106206636 original size:11 final size:11
Alignment explanation
Indices: 106206600--106206654 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
106206590 CATGATATGT
106206600 ATGATATGCAC
1 ATGATATGCAC
* *
106206611 ATGACATG--T
1 ATGATATGCAC
106206620 ATGATATGCAC
1 ATGATATGCAC
*
106206631 ATGATATG--T
1 ATGATATGCAC
106206640 ATGATATGCAC
1 ATGATATGCAC
106206651 ATGA
1 ATGA
106206655 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:106206736 original size:23 final size:23
Alignment explanation
Indices: 106206706--106206870 Score: 260
Period size: 23 Copynumber: 7.1 Consensus size: 23
106206696 AGGAAGTGCA
106206706 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
106206729 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
106206752 AAAGGG-TTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
106206775 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
106206798 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
106206822 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
106206845 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
106206868 AAA
1 AAA
106206871 AGAGGCAAGG
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
22 15 0.12
23 80 0.62
24 35 0.27
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:106206827 original size:47 final size:47
Alignment explanation
Indices: 106206706--106206872 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
106206696 AGGAAGTGCA
*
106206706 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
106206752 AAAGGG-TTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
106206798 AAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
106206845 AAAGGGCTTTTGCCCCAGTTATTAAAAG
1 AAAGGGCTTATGCCCCAGTTATCAAAAG
106206873 AGGCAAGGCC
Statistics
Matches: 113, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
45 15 0.13
46 35 0.31
47 63 0.56
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:106207075 original size:42 final size:42
Alignment explanation
Indices: 106207012--106207103 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
106207002 TAGTCTCCCC
* **
106207012 AAATGGGTTTGCATACATTCATTGGTATT-TCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTAT-ATGTGATATTG
* *
106207054 AAATGGGCTTGCATTCTTTCATTGACATTATATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTATATGTGATATTG
106207096 AAATGGGC
1 AAATGGGC
106207104 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTATATGTGATATTG
Found at i:106211383 original size:55 final size:55
Alignment explanation
Indices: 106211280--106211386 Score: 144
Period size: 55 Copynumber: 1.9 Consensus size: 55
106211270 AGTTATTGTT
* *
106211280 GTACACGGGCAGGCCACACGGGCGTGTGCCATAGCCGTGTCTTAAAGTCAGTATC
1 GTACACAGGCAGGCCACACGGGCGTGTGCCATAGCAGTGTCTTAAAGTCAGTATC
* * * *
106211335 GTACACAGGCAGGTCACACGTGCGTGTGCCATGGCAGTG-CGTTGAAGTCAGT
1 GTACACAGGCAGGCCACACGGGCGTGTGCCATAGCAGTGTC-TTAAAGTCAGT
106211387 GTTGCACACG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.21
Consensus pattern (55 bp):
GTACACAGGCAGGCCACACGGGCGTGTGCCATAGCAGTGTCTTAAAGTCAGTATC
Found at i:106213883 original size:29 final size:30
Alignment explanation
Indices: 106213842--106213949 Score: 134
Period size: 30 Copynumber: 3.7 Consensus size: 30
106213832 AGTTATAACC
*
106213842 ATCCC-TTTCATAA-TCGATAGCCTAAGCT
1 ATCCCTTTTCATAATTCGATAGCGTAAGCT
* * *
106213870 ATCCCTTTTCATAATTCGATTGTCGTCA-CC
1 ATCCCTTTTCATAATTCGATAG-CGTAAGCT
106213900 ATCCCTTTTCATAATTCGATAG-GTGAAGCT
1 ATCCCTTTTCATAATTCGATAGCGT-AAGCT
106213930 ATCCCTTTTCATAATTCGAT
1 ATCCCTTTTCATAATTCGAT
106213950 TGTAACACCC
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
28 7 0.10
29 9 0.13
30 49 0.72
31 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGATAGCGTAAGCT
Found at i:106213930 original size:60 final size:58
Alignment explanation
Indices: 106213839--106213952 Score: 185
Period size: 60 Copynumber: 1.9 Consensus size: 58
106213829 GGTAGTTATA
106213839 ACCATCCCTTTCATAATCGATAGCCTAAGCTATCCCTTTTCATAATTCGATTGTCGTC
1 ACCATCCCTTTCATAATCGATAGCCTAAGCTATCCCTTTTCATAATTCGATTGTCGTC
*
106213897 ACCATCCCTTTTCATAATTCGATAG-GTGAAGCTATCCCTTTTCATAATTCGATTGT
1 ACCATCCC-TTTCATAA-TCGATAGCCT-AAGCTATCCCTTTTCATAATTCGATTGT
106213953 AACACCCCTA
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
58 8 0.15
59 9 0.17
60 35 0.67
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.38
Consensus pattern (58 bp):
ACCATCCCTTTCATAATCGATAGCCTAAGCTATCCCTTTTCATAATTCGATTGTCGTC
Found at i:106214506 original size:15 final size:15
Alignment explanation
Indices: 106214483--106214515 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
106214473 TCTAAATAAA
106214483 CACTAGACTATGTGT
1 CACTAGACTATGTGT
*
106214498 CACTTGACTATGTGT
1 CACTAGACTATGTGT
106214513 CAC
1 CAC
106214516 ACACGGCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (15 bp):
CACTAGACTATGTGT
Found at i:106216976 original size:29 final size:30
Alignment explanation
Indices: 106216876--106217022 Score: 135
Period size: 30 Copynumber: 5.0 Consensus size: 30
106216866 CAGTTACATC
106216876 GATGGTCATCACCATCCCTTTTCATAATTT
1 GATGGTCATCACCATCCCTTTTCATAATTT
* * *
106216906 GATAGCCGA--AGCTATCCCTTTTCATAATTT
1 GATGGTC-ATCA-CCATCCCTTTTCATAATTT
* *
106216936 GATGGTCGTCACCATCCCTTTTCAT-AGTT
1 GATGGTCATCACCATCCCTTTTCATAATTT
*
106216965 GATGGTCATCACCAT-CATTTTCCATAATTT
1 GATGGTCATCACCATCCCTTTT-CATAATTT
* * *
106216995 GATAGTGA--AGCTATCCCTTTTCATAATT
1 GATGGTCATCA-CCATCCCTTTTCATAATT
106217023 CAGTGATCGT
Statistics
Matches: 94, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
28 6 0.06
29 31 0.33
30 55 0.59
31 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (30 bp):
GATGGTCATCACCATCCCTTTTCATAATTT
Found at i:106222604 original size:8 final size:8
Alignment explanation
Indices: 106222591--106222626 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
106222581 TCCATATTTT
106222591 CATTTTCA
1 CATTTTCA
106222599 CATTTTCA
1 CATTTTCA
106222607 CATTTTCA
1 CATTTTCA
106222615 CATTTTCA
1 CATTTTCA
106222623 CATT
1 CATT
106222627 CGACACTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (8 bp):
CATTTTCA
Found at i:106224275 original size:31 final size:31
Alignment explanation
Indices: 106224237--106224300 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
106224227 CCTTTTCATA
106224237 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
106224268 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
106224299 TT
1 TT
106224301 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:106224543 original size:24 final size:24
Alignment explanation
Indices: 106224492--106224609 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
106224482 GCTTTATCAT
*
106224492 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
106224517 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
106224541 ATAACTGGGGCATAAG-CCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
106224563 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
106224587 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
106224610 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
22 16 0.19
23 11 0.13
24 46 0.54
25 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:106224580 original size:46 final size:48
Alignment explanation
Indices: 106224492--106224609 Score: 161
Period size: 46 Copynumber: 2.5 Consensus size: 48
106224482 GCTTTATCAT
*
106224492 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
106224541 ATAACTGGGGCATAAG-CCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
106224587 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
106224610 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
46 37 0.59
47 11 0.17
48 5 0.08
49 10 0.16
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:106224685 original size:20 final size:20
Alignment explanation
Indices: 106224660--106224719 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
106224650 TATGATTACC
106224660 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
106224680 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
*
106224700 TCATGTGCATCTCATACATA
1 TCATGTGCATATCATACATA
106224720 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:106224794 original size:25 final size:25
Alignment explanation
Indices: 106224762--106224809 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
106224752 ATACATAAAC
* * *
106224762 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
106224787 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
106224810 CATGGTATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:106231722 original size:38 final size:35
Alignment explanation
Indices: 106231663--106231780 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
106231653 TCAATCATGC
*
106231663 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
106231702 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
106231733 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
106231764 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
106231781 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:106231724 original size:31 final size:31
Alignment explanation
Indices: 106231686--106231780 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
106231676 CCTTTTCATA
*
106231686 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
106231717 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
106231748 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
106231779 TT
1 TT
106231781 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:106232023 original size:24 final size:24
Alignment explanation
Indices: 106231972--106232114 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
106231962 GCTTTATCAT
*
106231972 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
106231997 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
106232021 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
106232044 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
106232068 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
106232092 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
106232115 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:106232051 original size:47 final size:48
Alignment explanation
Indices: 106231972--106232113 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
106231962 GCTTTATCAT
* *
106231972 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
106232021 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
106232068 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
106232114 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:106232072 original size:71 final size:72
Alignment explanation
Indices: 106231971--106232114 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
106231961 TGCTTTATCA
*
106231971 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
106232036 GCCCTTT
66 GCCCTTT
* * **
106232043 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
106232106 AGCCCTTT
65 AGCCCTTT
106232114 T
1 T
106232115 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:106232190 original size:20 final size:20
Alignment explanation
Indices: 106232165--106232224 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
106232155 TATGATTACC
106232165 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
106232185 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
*
106232205 TCATGTGCATCTCATACATA
1 TCATGTGCATATCATACATA
106232225 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:106232299 original size:25 final size:25
Alignment explanation
Indices: 106232267--106232314 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
106232257 ATACATAAAC
* * *
106232267 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
106232292 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
106232315 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:106240282 original size:17 final size:17
Alignment explanation
Indices: 106240250--106240282 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
106240240 TAAAAAAATC
106240250 ATATTTTTTTATATTTA
1 ATATTTTTTTATATTTA
106240267 ATATATTTTTTA-ATTT
1 ATAT-TTTTTTATATTT
106240283 CAAAATGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
ATATTTTTTTATATTTA
Found at i:106240592 original size:19 final size:19
Alignment explanation
Indices: 106240568--106240654 Score: 151
Period size: 19 Copynumber: 4.7 Consensus size: 19
106240558 AATCTTTAAG
*
106240568 GATATGCAATCTTAGAAAT
1 GATATGCAATCTTAGATAT
106240587 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
106240606 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
106240623 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
106240642 GATATGCAATCTT
1 GATATGCAATCTT
106240655 GAAAATATGA
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
17 17 0.26
19 48 0.74
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:106240606 original size:14 final size:15
Alignment explanation
Indices: 106240587--106240643 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
106240577 TCTTAGAAAT
106240587 GATATG-CAATCTTA
1 GATATGACAATCTTA
106240601 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
106240618 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
106240637 GATATGA
1 GATATGA
106240644 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:106240614 original size:36 final size:37
Alignment explanation
Indices: 106240568--106240658 Score: 141
Period size: 36 Copynumber: 2.5 Consensus size: 37
106240558 AATCTTTAAG
106240568 GATATGCAATCTTAGAAATGATATGCAATCTTAGATAT
1 GATA-GCAATCTTAGAAATGATATGCAATCTTAGATAT
*
106240606 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGAAATGATATGCAATCTTAGATAT
106240642 GATATGCAATCTT-GAAA
1 GATA-GCAATCTTAGAAA
106240659 ATATGATCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
36 35 0.71
37 3 0.06
38 11 0.22
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (37 bp):
GATAGCAATCTTAGAAATGATATGCAATCTTAGATAT
Found at i:106248186 original size:43 final size:42
Alignment explanation
Indices: 106248130--106248244 Score: 132
Period size: 38 Copynumber: 2.8 Consensus size: 42
106248120 AATTCATCAC
*
106248130 CTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
1 CTTAA-CCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
* * *
106248173 CTTATCTGCCTAAGCAGTAAGGTAACAGG-----TTTACAGAT
1 CTTAAC-CCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
106248211 CTTAACCCTCTAAGCAGTAGGGTAACAGGTTAAA
1 CTTAACCC-CTAAGCAGTAGGGTAACAGGTTAAA
106248245 GTATAGCAGA
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
37 1 0.02
38 32 0.55
42 1 0.02
43 24 0.41
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (42 bp):
CTTAACCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGAT
Found at i:106248632 original size:175 final size:175
Alignment explanation
Indices: 106248329--106249183 Score: 1002
Period size: 175 Copynumber: 4.9 Consensus size: 175
106248319 GAACAAACCG
* * * * *
106248329 AAGA-AACAGATTTGGCATCTCCATACTCGACGGAGAGCAGATCGAAGACATAGTAGATCTGACC
1 AAGATAACAGATCTGGCATCTCCAT-TTCGACGGAGAGCAG---G--TACATAGCAGATCTAACC
** * *
106248393 TTTGGATG-TTTTCACATCGAAGCAGATCCAAGATGATTTGGCATCCCTGTGTTTACAGGGAACA
60 TTCAGATGATTTT-AC-T-GAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACA
* * *
106248457 AATCGAAGACATAGCAGATCTGATTTTCGGATGTTCTCACACCAAAGAAGATCC
122 AATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
*
106248511 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGTAGGTACATAGCAGATCTAACCTTCAGA
1 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
*
106248576 T-ATTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAG
66 TGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAG
106248640 ACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
130 ACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
* * * *
106248686 AAAATAACAGATCTGGCATCTCTC-TTTCGACGGAGAGCATGTACATAGCAGGTCTAACCTTTAG
1 AAGATAACAGATCTGGCATCTC-CATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAG
* * * * * *
106248750 AT-TTTTATATTAAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAACAAATTGAA
65 ATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA
106248814 GACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
129 GACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
* *
106248861 AAGATAACAGATCTGGCATCTCCATTTTGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGA
1 AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
* * *
106248926 TGATTTTACTGACA-CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAATGAGCAAATCGAAG
66 TGATTTTACTGA-AGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAG
* * * **
106248990 ACACAGCAGATTTGGCTTTCACG-TGTT-T-ACACTGAAGCAGATCC
130 ACATAGCAGATTTGACTTTC-GGATGTTCTCACACCAAAGCAGATCC
* *** * * * *
106249034 AAGAT----GATTTGGCATTCTTGTGTTTAC-AAGGAACAAATCAAAG-ACATAGCAGATCTAAC
1 AAGATAACAGATCTGGCA-TC-TCCATTT-CGACGG---AGAGC-AGGTACATAGCAGATCTAAC
* *
106249093 CTTCAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAA
59 CTTCAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAA
* *
106249158 TCGAAGACACAGCAGATTTGGCTTTC
124 TCGAAGACATAGCAGATTTGACTTTC
106249184 ACGTGTTTAC
Statistics
Matches: 602, Mismatches: 55, Indels: 40
0.86 0.08 0.06
Matches are distributed among these distances:
169 8 0.01
170 2 0.00
171 7 0.01
173 20 0.03
174 109 0.18
175 386 0.64
176 7 0.01
177 25 0.04
178 1 0.00
179 1 0.00
182 17 0.03
183 19 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (175 bp):
AAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGATCTAACCTTCAGA
TGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA
CATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCC
Found at i:106249024 original size:87 final size:87
Alignment explanation
Indices: 106248940--106249253 Score: 434
Period size: 87 Copynumber: 3.6 Consensus size: 87
106248930 TTTACTGACA
*
106248940 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAATGAGCAAATCGAAGACACAGCAGATTTGG
1 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
106249005 CTTTCACGTGTTTACACTGAAG
66 CTTTCACGTGTTTACACTGAAG
* * * * * * **
106249027 CAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATCTAA
1 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
* *
106249092 CCTTCA-GATGATTT-TACTGAAG
66 CTTTCACG-TG-TTTACACTGAAG
106249114 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
1 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
*
106249179 CTTTCACGTGTTTACGCTGAAG
66 CTTTCACGTGTTTACACTGAAG
* * * * * *
106249201 TAGATCCAAGATGATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACA
1 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACA
106249254 TAGTAGATCT
Statistics
Matches: 195, Mismatches: 28, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
86 4 0.02
87 187 0.96
88 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (87 bp):
CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
CTTTCACGTGTTTACACTGAAG
Found at i:106249293 original size:87 final size:87
Alignment explanation
Indices: 106248940--106249299 Score: 431
Period size: 87 Copynumber: 4.1 Consensus size: 87
106248930 TTTACTGACA
* * * *
106248940 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAATGAGCAAATCGAAGACACAGCAGATTTGG
1 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAGATCTGA
106249005 CTTTCACGTGTTTACACTGAAG
66 CTTTCACGTGTTTACACTGAAG
* * * * *
106249027 CAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAGACATAGCAGATCTAA
1 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAGATCTGA
* *
106249092 CCTTCA-GATGATTT-TACTGAAG
66 CTTTCACG-TG-TTTACACTGAAG
* * *
106249114 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGG
1 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAGATCTGA
*
106249179 CTTTCACGTGTTTACGCTGAAG
66 CTTTCACGTGTTTACACTGAAG
* * * * * * *
106249201 TAGATCCAAGATGATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAGACATAGTAGATCTGA
1 CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAGATCTGA
* *
106249266 CATTC-CTGTGCTTACAGC-GAAG
66 CTTTCAC-GTGTTTACA-CTGAAG
*
106249288 CAGATCAAAGAT
1 CAGATCCAAGAT
106249300 TTTAACATGG
Statistics
Matches: 230, Mismatches: 37, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
86 5 0.02
87 220 0.96
88 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (87 bp):
CAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAACAAATCGAAGACACAGCAGATCTGA
CTTTCACGTGTTTACACTGAAG
Found at i:106249293 original size:174 final size:174
Alignment explanation
Indices: 106248553--106249270 Score: 608
Period size: 175 Copynumber: 4.1 Consensus size: 174
106248543 GAGAGTAGGT
* * *
106248553 ACATAGCAGATCTAACCTTCAGAT-ATTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
1 ACATAGCAGATCTAACATTCAGATGA-TTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTG
* * * * * **
106248617 TGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTC-GGATGTTCTCACACCAAAGCA
65 TGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACG-TGTT-T-ACACTGAAGCA
* * * * * * * *
106248681 GATCCAAAATAACAGATCTGGCAT--CTCTCTTT-CGACGG---AGAGC-ATG
127 GATCCAAGAT----GATTTGGCATCCCTGTGTTTAC-AAGGAACAAATCAAAG
* * * ** * * * * *
106248727 TACATAGCAGGTCTAACCTTTAGATTTTTATATTAAAGCAGATCCAAGATGATTTGGAATTCTTG
1 -ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTG
* * * * * * **
106248792 TGTTTACAAGGAACAAATTGAAGACATAGCAGATTTGACTTTC-GGATGTTCTCACACCAAAGCA
65 TGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACG-TGTT-T-ACACTGAAGCA
* * * * * *
106248856 GATCCAAGATAACAGATCTGGCATCTCCAT-T-TTGAC--GG---AGAGCAGAT
127 GATCCAAGAT----GATTTGGCATC-CC-TGTGTTTACAAGGAACAAATCAAAG
* **
106248903 ACATAGCAGATCTAACCTTCAGATGATTTTACTGACA-CAGATCCAAGATGATTTGGCATCCTTG
1 ACATAGCAGATCTAACATTCAGATGATTACACTGA-AGCAGATCCAAGATGATTTGGCATCCTTG
*
106248967 TGTTCACAATGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACGTGTTTACACTGAAGCAGAT
65 TGTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACGTGTTTACACTGAAGCAGAT
* *
106249032 CCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAAG
130 CCAAGATGATTTGGCATCCCTGTGTTTACAAGGAACAAATCAAAG
* **
106249077 ACATAGCAGATCTAACCTTCAGATGATTTTACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
1 ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* *
106249142 GTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGTAGATC
66 GTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACGTGTTTACACTGAAGCAGATC
* * *
106249207 CAAGATGATTTGGCATCCCTGTGTTTACAGGGAACAGATCGAAG
131 CAAGATGATTTGGCATCCCTGTGTTTACAAGGAACAAATCAAAG
* *
106249251 ACATAGTAGATCTGACATTC
1 ACATAGCAGATCTAACATTC
106249271 CTGTGCTTAC
Statistics
Matches: 477, Mismatches: 49, Indels: 35
0.85 0.09 0.06
Matches are distributed among these distances:
167 1 0.00
168 2 0.00
169 13 0.03
171 2 0.00
173 20 0.04
174 187 0.39
175 244 0.51
176 2 0.00
177 2 0.00
178 3 0.01
179 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (174 bp):
ACATAGCAGATCTAACATTCAGATGATTACACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
GTTCACAAGGAGCAAATCGAAGACACAGCAGATTTGGCTTTCACGTGTTTACACTGAAGCAGATC
CAAGATGATTTGGCATCCCTGTGTTTACAAGGAACAAATCAAAG
Found at i:106249868 original size:14 final size:15
Alignment explanation
Indices: 106249849--106249886 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
106249839 AATCTTTAAG
106249849 GATATG-CAATCTTA
1 GATATGACAATCTTA
106249863 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
106249880 GATATGA
1 GATATGA
106249887 TATGCAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:106249890 original size:36 final size:38
Alignment explanation
Indices: 106249849--106249927 Score: 117
Period size: 36 Copynumber: 2.1 Consensus size: 38
106249839 AATCTTTAAG
106249849 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
*
106249885 GATATGCAATTTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
106249925 GAT
1 GAT
106249928 CTTGTAATCT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
36 22 0.58
38 7 0.18
40 9 0.24
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:106249899 original size:19 final size:19
Alignment explanation
Indices: 106249849--106249927 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
106249839 AATCTTTAAG
106249849 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
106249868 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
106249885 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
106249904 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
106249925 GAT
1 GAT
106249928 CTTGTAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 17 0.31
19 28 0.52
21 9 0.17
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:106253800 original size:79 final size:79
Alignment explanation
Indices: 106253665--106253822 Score: 298
Period size: 79 Copynumber: 2.0 Consensus size: 79
106253655 TACATACGAG
*
106253665 TCTGCTCTGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAATTGGTTCTTTGTG
1 TCTGCTCCGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAATTGGTTCTTTGTG
106253730 TCATTAGAGGTTTT
66 TCATTAGAGGTTTT
*
106253744 TCTGCTCCGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTG
1 TCTGCTCCGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAATTGGTTCTTTGTG
106253809 TCATTAGAGGTTTT
66 TCATTAGAGGTTTT
106253823 CTTGGTGCCA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (79 bp):
TCTGCTCCGTCATAGCCAGATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAATTGGTTCTTTGTG
TCATTAGAGGTTTT
Found at i:106253858 original size:79 final size:79
Alignment explanation
Indices: 106253684--106253858 Score: 201
Period size: 79 Copynumber: 2.2 Consensus size: 79
106253674 TCATAGCCAG
* *
106253684 ATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAATTGGTTCTTTGTGTCATTAGAGGTTTTTCTGC
1 ATTTACTCTAGAAAAAGTCTAGGGTTTTTACAATTGGTTCTTTGTGTCATTAGAGGTTTTTCTGC
** * * *
106253749 TCCGTCATAGCCAG
66 TCCAACAAAGCAAA
* * *
106253763 ATTTAGTCTAGCAAAAGTCTAGGGTTTTTACAGTTGGTTCTTTGTGTCATTAGAGG-TTTTCTTG
1 ATTTACTCTAGAAAAAGTCTAGGGTTTTTACAATTGGTTCTTTGTGTCATTAGAGGTTTTTC-TG
* *
106253827 GTGCCAACAAAGTAAA
65 CT-CCAACAAAGCAAA
*
106253843 ATTT-CTTTAGAAAAAG
1 ATTTACTCTAGAAAAAG
106253859 GGATATTAGA
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
78 5 0.06
79 67 0.81
80 11 0.13
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.39
Consensus pattern (79 bp):
ATTTACTCTAGAAAAAGTCTAGGGTTTTTACAATTGGTTCTTTGTGTCATTAGAGGTTTTTCTGC
TCCAACAAAGCAAA
Found at i:106256602 original size:4 final size:4
Alignment explanation
Indices: 106256595--106256619 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
106256585 TATTTGAACG
106256595 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
106256620 GTTAATTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:106258357 original size:24 final size:24
Alignment explanation
Indices: 106258330--106258381 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
106258320 TTAAAGTGAT
106258330 TATTT-TAATATTAAATTAATATAA
1 TATTTATAAT-TTAAATTAATATAA
* * *
106258354 TATTTATCATTTATATTAATTTAA
1 TATTTATAATTTAAATTAATATAA
106258378 TATT
1 TATT
106258382 AAAGTGGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
TATTTATAATTTAAATTAATATAA
Found at i:106259307 original size:31 final size:31
Alignment explanation
Indices: 106259272--106259332 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 31
106259262 TATTATATAT
106259272 AAATAT-TCAATCGGTTCGATTAATTTTTTAG
1 AAATATATCAATCGG-TCGATTAATTTTTTAG
*
106259303 AAATATAAATTAATCGGTCGATTAATTTTT
1 AAATAT--ATCAATCGGTCGATTAATTTTT
106259333 GATATGTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 6 0.23
33 13 0.50
34 7 0.27
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (31 bp):
AAATATATCAATCGGTCGATTAATTTTTTAG
Found at i:106263028 original size:34 final size:36
Alignment explanation
Indices: 106262989--106263068 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 36
106262979 AATACTAAAT
*
106262989 ATTAAATTA-GA-G-TTTAGGGTATTAGGGTTAATTG
1 ATTAAATTAGGATGATTTAGGGT-TTAAGGTTAATTG
106263023 ATTAAATTAGGGATTGATTTAGGGTTTAAGGTTAATTG
1 ATTAAATTA-GGA-TGATTTAGGGTTTAAGGTTAATTG
106263061 ATTAAATT
1 ATTAAATT
106263069 TAGGGTTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
34 9 0.22
36 2 0.05
38 21 0.52
39 8 0.20
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (36 bp):
ATTAAATTAGGATGATTTAGGGTTTAAGGTTAATTG
Found at i:106263075 original size:20 final size:20
Alignment explanation
Indices: 106263010--106263082 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
106263000 GTTTAGGGTA
106263010 TTAGGGTTAATTGATTAAA-
1 TTAGGGTTAATTGATTAAAT
**
106263029 TTAGGG---ATTGATTTAGGGT
1 TTAGGGTTAATTGA-TTA-AAT
*
106263048 TTAAGGTTAATTGATTAAAT
1 TTAGGGTTAATTGATTAAAT
106263068 TTAGGGTTAATTGAT
1 TTAGGGTTAATTGAT
106263083 ACATAATGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
16 5 0.12
17 3 0.07
19 11 0.26
20 15 0.36
21 3 0.07
22 5 0.12
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.44
Consensus pattern (20 bp):
TTAGGGTTAATTGATTAAAT
Found at i:106263846 original size:126 final size:126
Alignment explanation
Indices: 106263620--106264001 Score: 541
Period size: 126 Copynumber: 3.0 Consensus size: 126
106263610 TTTCTACAAG
* * * * * *
106263620 AATAATTCTGAGCAGACGTTTCTAAACAAATAGCGTCGAAAAACGCTTCAAGCAGGATACATTAT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCG-AAAACGCTTCAAGCAGGATGCACTGT
* * *
106263685 CAGCAAAATTTCTGGAAAAAGCTCTCACATGGACGCTCTTTTGTTACAATAGTTCGTAGAAA
65 CAGTAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAA
**
106263747 AATAATTCTGAGTAGATATTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* * * *
106263812 AGTAAAATTTTTGGAAAAAGCTCCCACGTAGACGCTCTTTTACTACAATAGTTCGTAGAAA
66 AGTAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAA
* *
106263873 AATAATTCTGAGTAGACGTTTTTGAACAAATAGTGTCGAAAAAGCTTCAAGCAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* * * * *
106263938 A-TCAAAACTTCAGAAAAAAGCTCCCACATGGACCCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGT-AAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAA
106263999 AAT
1 AAT
106264002 GAGGCTATAA
Statistics
Matches: 226, Mismatches: 28, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
125 1 0.00
126 192 0.85
127 33 0.15
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
AGTAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAATAGTTCGTAGAAA
Found at i:106271205 original size:7 final size:7
Alignment explanation
Indices: 106271193--106271224 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
106271183 TATTACTTAT
106271193 ATACATA
1 ATACATA
106271200 ATACATA
1 ATACATA
106271207 ATACATA
1 ATACATA
106271214 ATACATA
1 ATACATA
106271221 ATAC
1 ATAC
106271225 TAAATATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:106271268 original size:18 final size:18
Alignment explanation
Indices: 106271247--106271302 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 18
106271237 ACGAAATGAC
106271247 TATTTTATTATGTATATA
1 TATTTTATTATGTATATA
106271265 TA---T-TTAT-T-TA-A
1 TATTTTATTATGTATATA
*
106271276 TACTTTATTATGTATATA
1 TATTTTATTATGTATATA
106271294 TATTTTATT
1 TATTTTATT
106271303 TAATACTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 14
0.67 0.02 0.31
Matches are distributed among these distances:
11 3 0.10
12 2 0.07
13 1 0.03
14 5 0.17
15 5 0.17
16 1 0.03
17 2 0.07
18 11 0.37
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (18 bp):
TATTTTATTATGTATATA
Found at i:106271292 original size:29 final size:30
Alignment explanation
Indices: 106271250--106271310 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 30
106271240 AAATGACTAT
106271250 TTTATTATGTATATATA-TTTATTTAATAC
1 TTTATTATGTATATATATTTTATTTAATAC
106271279 TTTATTATGTATATATATTTTATTTAATAC
1 TTTATTATGTATATATATTTTATTTAATAC
106271309 TT
1 TT
106271311 ACTTCTGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTATTATGTATATATATTTTATTTAATAC
Found at i:106272370 original size:48 final size:47
Alignment explanation
Indices: 106272238--106272366 Score: 163
Period size: 48 Copynumber: 2.7 Consensus size: 47
106272228 ATGCAAACAT
*
106272238 CATAAATGAAAAAAAAAATCAAGCAGTATTGAAATTGTAATTATAATTG
1 CATAAATG--AAAAAAAATCAAACAGTATTGAAATTGTAATTATAATTG
* *
106272287 CATAAATGAATAAAATATCAAATAGTATTGCAAATT-TAATTA-AATTTG
1 CATAAATGAA-AAAAAATCAAACAGTATTG-AAATTGTAATTATAA-TTG
*
106272335 CATAAATTAAAAAAAATCAAACAGTATTGAAA
1 CATAAATGAAAAAAAATCAAACAGTATTGAAA
106272367 AATTAAAATT
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
46 3 0.04
47 21 0.30
48 34 0.48
49 13 0.18
ACGTcount: A:0.54, C:0.07, G:0.09, T:0.29
Consensus pattern (47 bp):
CATAAATGAAAAAAAATCAAACAGTATTGAAATTGTAATTATAATTG
Found at i:106272524 original size:11 final size:11
Alignment explanation
Indices: 106272508--106272539 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
106272498 TTTTAAACAA
106272508 AGAAATTTGAT
1 AGAAATTTGAT
106272519 AGAAATTTGAT
1 AGAAATTTGAT
*
106272530 AGAATTTTGA
1 AGAAATTTGA
106272540 GAAAAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (11 bp):
AGAAATTTGAT
Found at i:106272973 original size:2 final size:2
Alignment explanation
Indices: 106272966--106273016 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
106272956 TGGCCACATT
106272966 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
106273008 TA TA TA TA T
1 TA TA TA TA T
106273017 GGGTAAACTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:106273272 original size:25 final size:26
Alignment explanation
Indices: 106273221--106273272 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
106273211 TAGAGTGACT
*
106273221 AAAAGACTAGTTTACTTCTGTTAAAA
1 AAAAGACTAATTTACTTCTGTTAAAA
* * *
106273247 AAAAGGCTAATTTACTTTTTTTAAAA
1 AAAAGACTAATTTACTTCTGTTAAAA
106273273 CGTGAAAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (26 bp):
AAAAGACTAATTTACTTCTGTTAAAA
Found at i:106287956 original size:40 final size:40
Alignment explanation
Indices: 106287889--106288060 Score: 215
Period size: 40 Copynumber: 4.3 Consensus size: 40
106287879 ACTCAAGTAT
*
106287889 CTTCGGGATC-TAGCC-GGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCTGGATATAGCAACTCGCACAAATGC
106287928 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACAAATGC
* * * * *
106287968 CTTCGAGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCTGGATAT-AGCAACTCGCACAAATGC
* * *
106288008 CTTCGGGACATAGCCTGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACAAATGC
*
106288048 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
106288061 TCCGGTTATC
Statistics
Matches: 112, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
38 2 0.02
39 14 0.12
40 94 0.84
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACAAATGC
Found at i:106288006 original size:80 final size:80
Alignment explanation
Indices: 106287889--106288065 Score: 245
Period size: 80 Copynumber: 2.2 Consensus size: 80
106287879 ACTCAAGTAT
* * *
106287889 CTTCGGGATC-TAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCTGGATATAG
1 CTTC-GGATCTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCTGGATATAG
106287952 CAACTCGCACAAATGC
65 CAACTCGCACAAATGC
*
106287968 CTTC-GAGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCTGGATATA
1 CTTCGGA-TCTTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCTGGATATA
*
106288031 GCAACTCGCACGAATGC
64 GCAACTCGCACAAATGC
*
106288048 CTTCGGATCTTAGTCCGG
1 CTTCGGATCTTAGCCCGG
106288066 TTATCATCCG
Statistics
Matches: 87, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
77 2 0.02
78 2 0.02
79 7 0.08
80 73 0.84
81 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCTGGATATAGC
AACTCGCACAAATGC
Found at i:106295275 original size:39 final size:40
Alignment explanation
Indices: 106295232--106295356 Score: 148
Period size: 40 Copynumber: 3.1 Consensus size: 40
106295222 ACTCAAGTAT
*
106295232 CTTCGGGATTTAG-CAGGATATAACAACTCGCACAAATGC
1 CTTCGGGATTTAGCCCGGATATAACAACTCGCACAAATGC
* *
106295271 CTTCGGG-TCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGAT-TTAGCCCGGATATAA-CAACTCGCACAAATGC
** * *
106295311 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGATTTAGCCCGGATATAACAACTCGCACAAATGC
106295351 CTTCGG
1 CTTCGG
106295357 ATCTTAGTCC
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
38 1 0.01
39 12 0.17
40 58 0.81
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGATTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:106295309 original size:40 final size:40
Alignment explanation
Indices: 106295247--106295368 Score: 156
Period size: 40 Copynumber: 3.0 Consensus size: 40
106295237 GGATTTAGCA
106295247 GGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* * * *
106295287 GGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCC
1 GGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGCCC
* * * *
106295327 GGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCC
1 GGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCC
106295367 GG
1 GG
106295369 TTATCATCCG
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 66 0.97
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
GGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCC
Found at i:106297138 original size:46 final size:46
Alignment explanation
Indices: 106296984--106297143 Score: 143
Period size: 46 Copynumber: 3.4 Consensus size: 46
106296974 GCTGATGCTT
* * * *
106296984 TCCCAGACATGCCTTACACTAGCTC-TA-GTCTCAAT-GCCAATGCAAG
1 TCCCAGACATGTCTTACACTGGCTCTTATG-CT--ATGGCCGATGCATG
106297030 TCCCAGACATGTCTTACACTGGCT-TAAATAT-CT-TGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTCT---TATGCTAT--GGCCGATGCATG
* * *
106297078 TCCCAAACAAGTCTTACACTGGCTCTTATGCTATGGCTGATGCATG
1 TCCCAGACATGTCTTACACTGGCTCTTATGCTATGGCCGATGCATG
106297124 TCCCAGACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
106297144 AGCACACATA
Statistics
Matches: 94, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
45 1 0.01
46 54 0.57
47 2 0.02
48 34 0.36
49 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTGGCTCTTATGCTATGGCCGATGCATG
Found at i:106299688 original size:42 final size:43
Alignment explanation
Indices: 106299589--106299691 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
106299579 GAAATATATA
*
106299589 ATGCCAATGTCCCAGACATGGTATTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACAGGGTATTACATGTAATCAAACATCG
* * * * *
106299632 ATGCCACTGTCCCAGATAGGGTCTTACATG-AAGTCAGATA-CG
1 ATGCCAATGTCCCAGACAGGGTATTACATGTAA-TCAAACATCG
106299674 ATGCCAATGTCCCAGACA
1 ATGCCAATGTCCCAGACA
106299692 TGGTCGTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 20 0.39
43 31 0.61
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTATTACATGTAATCAAACATCG
Found at i:106300536 original size:37 final size:37
Alignment explanation
Indices: 106300480--106300554 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
106300470 CCAAAATAGG
*
106300480 TAGCCGAACCCTAGTAAGCTTATTTCTTTCTTTTTCT
1 TAGCCGAACCCTAGCAAGCTTATTTCTTTCTTTTTCT
*
106300517 TAGCTGAACCCTAGCAAGCTTATTTCTTTCTTTTTCT
1 TAGCCGAACCCTAGCAAGCTTATTTCTTTCTTTTTCT
106300554 T
1 T
106300555 TTGTGAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.19, C:0.24, G:0.11, T:0.47
Consensus pattern (37 bp):
TAGCCGAACCCTAGCAAGCTTATTTCTTTCTTTTTCT
Found at i:106303518 original size:47 final size:47
Alignment explanation
Indices: 106303444--106303663 Score: 216
Period size: 47 Copynumber: 4.7 Consensus size: 47
106303434 TGGGTAAGGT
* *
106303444 GCCGGTGCCATGTCCCAAACATGGTCTTACACTGGCTCACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * * * *
106303491 GTCGATGCCATGTCACATACATGGTCTTACACTGACT-ATCATCTCGCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AA
* * *
106303539 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
* * * ***
106303584 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGCCTCTCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAA
*
106303633 GCCGATG-CATGTGCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
106303664 AGCCAACAAC
Statistics
Matches: 144, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 35 0.24
47 77 0.53
48 30 0.21
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAA
Found at i:106303613 original size:94 final size:93
Alignment explanation
Indices: 106303452--106303666 Score: 279
Period size: 94 Copynumber: 2.3 Consensus size: 93
106303442 GTGCCGGTGC
* * * *
106303452 CATGTCCCAAACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCACATACATGGTC
1 CATGTCCCAGACAT-GTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCACAGACATGGTC
*
106303517 TTACACTGACTATCAT-CTCGCAGCCGATG
65 TTACACTGACTATCATAAT-GCAGCCGATG
* * *
106303546 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA-GCCGATGCCATGTCACAGACATGGTC
* * **
106303611 TTACACTGCCTCTCATAATGTGGCCGATG
65 TTACACTGACTATCATAATGCAGCCGATG
*
106303640 CATGTGCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
106303667 CAACAACAAC
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
93 21 0.20
94 84 0.79
95 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAGCCGATGCCATGTCACAGACATGGTCT
TACACTGACTATCATAATGCAGCCGATG
Found at i:106315501 original size:20 final size:19
Alignment explanation
Indices: 106315465--106315510 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
106315455 TGAATCCTCC
*
106315465 TATTTTTTTTATTTATTCT
1 TATTTTCTTTATTTATTCT
*
106315484 TATTTTCTTTAGTTTATTTT
1 TATTTTCTTTA-TTTATTCT
106315504 TATTTTC
1 TATTTTC
106315511 ATTTCAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (19 bp):
TATTTTCTTTATTTATTCT
Found at i:106315509 original size:5 final size:5
Alignment explanation
Indices: 106315465--106315538 Score: 55
Period size: 5 Copynumber: 14.4 Consensus size: 5
106315455 TGAATCCTCC
* *
106315465 TATTT T-TTT TA-TT TATTCT TATTT T-CTT TAGTT TATTTT TATTT TCATTT
1 TATTT TATTT TATTT TATT-T TATTT TATTT TATTT TA-TTT TATTT T-ATTT
*
106315515 CAATTT TATTAT TATTT TATTT TA
1 -TATTT TATT-T TATTT TATTT TA
106315539 AAATACATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
4 11 0.20
5 23 0.41
6 22 0.39
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.73
Consensus pattern (5 bp):
TATTT
Found at i:106318453 original size:17 final size:16
Alignment explanation
Indices: 106318433--106318475 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
106318423 TCTCTTCGCT
*
106318433 TTAATTAAATCAGTTAA
1 TTAATTAAAT-AATTAA
106318450 TTAATTTAAATAATTAA
1 TTAA-TTAAATAATTAA
106318467 TTAATTAAA
1 TTAATTAAA
106318476 ACAAACCCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 5 0.21
17 13 0.54
18 6 0.25
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
TTAATTAAATAATTAA
Found at i:106320920 original size:47 final size:48
Alignment explanation
Indices: 106320847--106321109 Score: 172
Period size: 47 Copynumber: 5.6 Consensus size: 48
106320837 GTAAGGTGCT
* * * *
106320847 GATGCCATATCCCAAATATGGTCTTACACTGGCTCACATCT-GAATTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGTC
* * * *
106320894 GATGCCATGTCCCAGACATGGCCTTACACTGACT-ATCATCTCGCAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCGAAGTC
* * * * *
106320942 GATG-CATGTCCCAAACAT-GTCTTACATTGGCTTACGTCTCG-AGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGTC
* * * * *
106320987 TGATG-TATGTCTCAGACAT-GTCTTACACTAGCTCTCGTCTC-AATGTC
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAA-GTC
* * * * * * *
106321034 GATGCCATGTTCCAGACATGGTTTTAAACTGGCTCTCATAAT-G-TGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCGAAGTC
106321081 TGATG-CATGTCCCAGACAT-GTCTTACACT
1 -GATGCCATGTCCCAGACATGGTCTTACACT
106321110 AGCCAACAAC
Statistics
Matches: 170, Mismatches: 35, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
45 3 0.02
46 64 0.38
47 76 0.45
48 26 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGTC
Found at i:106321026 original size:46 final size:46
Alignment explanation
Indices: 106320894--106321112 Score: 160
Period size: 46 Copynumber: 4.7 Consensus size: 46
106320884 ATCTGAATTC
* * * *
106320894 GATGCCATGTCCCAGACATGGCCTTACACT-GACTATCATCTCGCA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTCGTCTCG-AGGCT
* * *
106320942 GATGCATGTCCCAAACATGTCTTACATTGGCT-TACGTCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCGAGGCT
* * * *
106320988 GATGTATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAATG-T
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGCT
* * * * * * *
106321033 CGATGCCATGTTCCAGACATGGTTTTAAACTGGCTCTCATAAT-GTGGCT
1 -GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGT-CTCGAGGCT
106321082 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
106321113 CAACAACAGC
Statistics
Matches: 135, Mismatches: 27, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
45 3 0.02
46 67 0.50
47 39 0.29
48 24 0.18
49 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGCT
Found at i:106340014 original size:16 final size:15
Alignment explanation
Indices: 106339987--106340016 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
106339977 TAAAATAAAA
106339987 AATAAAATAAAATGC
1 AATAAAATAAAATGC
106340002 AATAAAGATAAAATG
1 AATAAA-ATAAAATG
106340017 GCTAAAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.20
Consensus pattern (15 bp):
AATAAAATAAAATGC
Found at i:106341623 original size:20 final size:21
Alignment explanation
Indices: 106341598--106341636 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
106341588 TCCTTAAAAC
106341598 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
106341618 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
106341637 ACCAACTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.21, C:0.31, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:106342869 original size:46 final size:46
Alignment explanation
Indices: 106342768--106342989 Score: 236
Period size: 46 Copynumber: 4.7 Consensus size: 46
106342758 TGGGTAAGGT
106342768 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCA-CATCTCG-AG
* * *
106342816 GCCGATGCATGTCCCAGACATGTCTCACACTAGCTCACGTTTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCGAG
* * * * *
106342862 GCCGATGCATGTCCCAGACATGTCTTACATTAACTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCGAG
* * *
106342908 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACAT-CTCGAG
*
106342956 GCCGATTCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
106342990 CAACAACAAC
Statistics
Matches: 150, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
45 1 0.01
46 74 0.49
47 44 0.29
48 30 0.20
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCGAG
Found at i:106342975 original size:94 final size:92
Alignment explanation
Indices: 106342768--106342987 Score: 282
Period size: 94 Copynumber: 2.3 Consensus size: 92
106342758 TGGGTAAGGT
* *
106342768 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACTATCATCTCATAGCCGATGCATGTCCCAG
* *
106342833 ACATGTCTCACACTAGCTCACGTTTCGAG
64 ACATGTCTCACACTAGCTCACATATCGAG
* *
106342862 GCCGATGCATGTCCCAGACATGTCTTACATTAACTCTCATCTCA-ATGCCGATGCCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAACTATCATCTCATA-GCCGATG-CATGTCCCAG
* * *
106342926 ACATGGTCTTACACTAGCTCTCATAAT-GTG
64 ACAT-GTCTCACACTAGCTCACAT-ATCGAG
*
106342956 GCCGATTCATGTCCCAGACATGTCTTACACTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTA
106342988 GCCAACAACA
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
91 1 0.01
92 26 0.23
93 28 0.25
94 55 0.50
95 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAACTATCATCTCATAGCCGATGCATGTCCCAGAC
ATGTCTCACACTAGCTCACATATCGAG
Found at i:106344698 original size:16 final size:16
Alignment explanation
Indices: 106344677--106344707 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106344667 ATTGAGTTGA
*
106344677 GAAAATTATTTAATTG
1 GAAAATTAATTAATTG
106344693 GAAAATTAATTAATT
1 GAAAATTAATTAATT
106344708 TAAATTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (16 bp):
GAAAATTAATTAATTG
Found at i:106348745 original size:19 final size:19
Alignment explanation
Indices: 106348723--106348764 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
106348713 TCAAGCGATC
*
106348723 AAAACTTTTGAATTTGATT
1 AAAACTTTTGAATTTGAGT
*
106348742 AAAACTTTTGGATTTGAGT
1 AAAACTTTTGAATTTGAGT
106348761 AAAA
1 AAAA
106348765 TGTAGATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (19 bp):
AAAACTTTTGAATTTGAGT
Found at i:106352229 original size:35 final size:35
Alignment explanation
Indices: 106352164--106352252 Score: 101
Period size: 35 Copynumber: 2.6 Consensus size: 35
106352154 TTGCGATGAC
* * *
106352164 GATTTATAGGT-CATTCGGGTGACACCATGGAAACA
1 GATTTATAGGTCCTTTGGGGGGACACCATGGAAA-A
* *
106352199 G-TTTATAGGTCCTTTGGGGGGACACTATGGAAAT
1 GATTTATAGGTCCTTTGGGGGGACACCATGGAAAA
*
106352233 GATTTATAGGTCTTTTGGGG
1 GATTTATAGGTCCTTTGGGG
106352253 CAACACCTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
34 10 0.22
35 36 0.78
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.33
Consensus pattern (35 bp):
GATTTATAGGTCCTTTGGGGGGACACCATGGAAAA
Found at i:106352401 original size:68 final size:67
Alignment explanation
Indices: 106352292--106352568 Score: 322
Period size: 68 Copynumber: 4.1 Consensus size: 67
106352282 TCGAAATTGA
** * * *
106352292 AAGTCTGCCACTAAAATAAACATGGGATCATATTGTGTAAGACCATGGTTCGAATATGTCAACAT
1 AAGTCTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCATGG-TCGACTATGGCAACAT
106352357 ATG
65 ATG
* *
106352360 AAGTCTGCCAGGACAATAAACATGAGATCATATTGTATAAGACCATAGGTCGACTATGGCAACAT
1 AAGTCTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCAT-GGTCGACTATGGCAACAT
106352425 ATG
65 ATG
* * * ** * *
106352428 AAGTCTACCAAGACAATAAACATGGGAACATATTGTGTAAGACTGTAGCTCGACTATGGAAACAT
1 AAGTCTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCAT-GGTCGACTATGGCAACAT
106352493 ATG
65 ATG
* * * * * *
106352496 AAATCCT-CCAGGATAATAAACATGGAATCATATTGTGTAAGACCATAGGTAGGCTATGGCAATA
1 AAGT-CTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCAT-GGTCGACTATGGCAACA
106352560 TATG
64 TATG
106352564 AAGTC
1 AAGTC
106352569 CACCAAGATG
Statistics
Matches: 178, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
67 1 0.01
68 173 0.97
69 4 0.02
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.25
Consensus pattern (67 bp):
AAGTCTGCCAGGACAATAAACATGGGATCATATTGTGTAAGACCATGGTCGACTATGGCAACATA
TG
Found at i:106352537 original size:136 final size:136
Alignment explanation
Indices: 106352306--106352576 Score: 375
Period size: 136 Copynumber: 2.0 Consensus size: 136
106352296 CTGCCACTAA
* * * ** *
106352306 AATAAACATGGGATCATATTGTGTAAGACCATGGTTCGAATATGTCAACATATGAAGTCTGCCAG
1 AATAAACATGGGAACATATTGTGTAAGACCATAGCTCGAATATGGAAACATATGAAATCTGCCAG
* *
106352371 GACAATAAACATGAGATCATATTGTATAAGACCATAGGTCGACTATGGCAACATATGAAGTCTAC
66 GACAATAAACATGAGATCATATTGTATAAGACCATAGGTAGACTATGGCAACATATGAAGTCCAC
106352436 CAAGAC
131 CAAGAC
** *
106352442 AATAAACATGGGAACATATTGTGTAAGACTGTAGCTCGACTATGGAAACATATGAAATCCT-CCA
1 AATAAACATGGGAACATATTGTGTAAGACCATAGCTCGAATATGGAAACATATGAAAT-CTGCCA
* * * *
106352506 GGATAATAAACATG-GAATCATATTGTGTAAGACCATAGGTAGGCTATGGCAATATATGAAGTCC
65 GGACAATAAACATGAG-ATCATATTGTATAAGACCATAGGTAGACTATGGCAACATATGAAGTCC
106352570 ACCAAGA
129 ACCAAGA
106352577 TGATGAACTA
Statistics
Matches: 118, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
135 1 0.01
136 115 0.97
137 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (136 bp):
AATAAACATGGGAACATATTGTGTAAGACCATAGCTCGAATATGGAAACATATGAAATCTGCCAG
GACAATAAACATGAGATCATATTGTATAAGACCATAGGTAGACTATGGCAACATATGAAGTCCAC
CAAGAC
Found at i:106358184 original size:30 final size:30
Alignment explanation
Indices: 106358148--106358204 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
106358138 TGGGTAACCT
*
106358148 TGATATAATGTCAACTTGTGTGAGCAACAC
1 TGATATAATGTCAACTTATGTGAGCAACAC
*
106358178 TGATATACTGTCAACTTATGTGAGCAA
1 TGATATAATGTCAACTTATGTGAGCAA
106358205 TTTTTTCCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (30 bp):
TGATATAATGTCAACTTATGTGAGCAACAC
Found at i:106358493 original size:29 final size:29
Alignment explanation
Indices: 106358451--106358511 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
106358441 GGATAGTTAA
*
106358451 GTCGATTGCCAAATAGATTTATTAACTAT
1 GTCGATTACCAAATAGATTTATTAACTAT
*
106358480 GTCGATTATCAAATAGATTTATTAACTAT
1 GTCGATTACCAAATAGATTTATTAACTAT
106358509 GTC
1 GTC
106358512 TTATTAATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (29 bp):
GTCGATTACCAAATAGATTTATTAACTAT
Found at i:106360345 original size:10 final size:9
Alignment explanation
Indices: 106360314--106360353 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
106360304 AATAGATTTT
106360314 TTTTTAAAA
1 TTTTTAAAA
106360323 TTTTTAAAA
1 TTTTTAAAA
*
106360332 TTTTTATAA
1 TTTTTAAAA
* *
106360341 GTTTTAAGA
1 TTTTTAAAA
106360350 TTTT
1 TTTT
106360354 GGGGGGTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:106372931 original size:2 final size:2
Alignment explanation
Indices: 106372924--106373094 Score: 342
Period size: 2 Copynumber: 85.5 Consensus size: 2
106372914 TTTTATGTCA
106372924 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
106372966 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
106373008 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
106373050 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
106373092 TG T
1 TG T
106373095 TCATCTATGC
Statistics
Matches: 169, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 169 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:106373872 original size:22 final size:22
Alignment explanation
Indices: 106373847--106373888 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
106373837 AAAGGAGAGA
106373847 AAGGAGAAGGAGAAGAAGAAGG
1 AAGGAGAAGGAGAAGAAGAAGG
*
106373869 AAGGTGAAGGAGAAGAAGAA
1 AAGGAGAAGGAGAAGAAGAA
106373889 AAAAAAGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.43, T:0.02
Consensus pattern (22 bp):
AAGGAGAAGGAGAAGAAGAAGG
Found at i:106374378 original size:112 final size:113
Alignment explanation
Indices: 106374157--106374598 Score: 660
Period size: 113 Copynumber: 3.9 Consensus size: 113
106374147 ATTTATAGTT
* * *
106374157 GATTTGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAG-GTATTAGTGTATTGTAATTTTTTTAG
*
106374222 TAATATATTTTTAAAAAAATAAGTTTATAGCTATTTTATTAGTAATTTAA
65 TAATATA-TTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
*
106374272 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTA-GTATTAGCGTATTGTAATTTTTTTAGT
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGGTATTAGTGTATTGTAATTTTTTTAGT
*
106374336 AATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
66 AATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
106374384 GATTAGGTTATATAAATTATTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAG-GTATTAGTGTATTGTAATTTTTTTAG
*
106374449 TAATATATTTT-AAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
65 TAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
106374497 GATTAGGTTATAT--ATTGTTAGTGTTTAGTGGTTTAGTGTGTATTAATGTATTGTCATTTTTAT
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTA--G-GTATTAGTGTATTGT-AATTTT-T
* *
106374560 TTAGTAATGTA-TTTAAAAAAATAATTTTATAGTTATTTT
61 TTAGTAATATATTTTAAAAAAATAATTTTATAGCTATTTT
106374599 GTGTTAGTAT
Statistics
Matches: 304, Mismatches: 16, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
111 21 0.07
112 76 0.25
113 97 0.32
114 42 0.14
115 68 0.22
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (113 bp):
GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGGTATTAGTGTATTGTAATTTTTTTAGT
AATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
Found at i:106374642 original size:227 final size:221
Alignment explanation
Indices: 106374167--106374598 Score: 611
Period size: 227 Copynumber: 1.9 Consensus size: 221
106374157 GATTTGGTTA
* *
106374167 TATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATATTT
1 TATATATTATTAG-GTTTAGT-GTTTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATATTT
106374232 TTAAAAAAATAAGTTTATAGCTATTTTATTAGTAATTTAAGATTAGGTTATATAAATTGTTAGTG
64 TTAAAAAAATAAGTTTATAGCTATTTTATTAGTAATTTAAGATTAGGTTATAT-AATTGTTAGTG
* *
106374297 TTTAGTGGTTTAGTATTAGCGTATTGTAATTTTTTTAGTAATATATTTTAAAAAAATATTTTTAT
128 TTTAGTGGTTTAGTATTAACGTATTGTAATTTTTTTAGTAATATATTTTAAAAAAATAATTTTAT
*
106374362 AGCTATTTTATTAGTAATTTAAGATTAGGT
193 AGCTATTTTATTAGTAATTTAAAATTA-GT
106374392 TATATAAATTATTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATA-
1 TATAT--ATTATTAG-GTTTAGT-GTTTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATAT
**
106374456 TTTT-AAAAAATATTTTTATAGCTATTTTATTAGTAATTTAAGATTAGGTTATAT-ATTGTTAGT
62 TTTTAAAAAAATAAGTTTATAGCTATTTTATTAGTAATTTAAGATTAGGTTATATAATTGTTAGT
* * *
106374519 GTTTAGTGGTTTAGTGTGTATTAATGTATTGTCATTTTTATTTAGTAATGTA-TTTAAAAAAATA
127 GTTTAGTGGTTTA----GTATTAACGTATTGT-AATTTT-TTTAGTAATATATTTTAAAAAAATA
*
106374583 ATTTTATAGTTATTTT
186 ATTTTATAGCTATTTT
106374599 GTGTTAGTAT
Statistics
Matches: 188, Mismatches: 11, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
223 22 0.12
225 52 0.28
226 4 0.02
227 68 0.36
228 31 0.16
229 11 0.06
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (221 bp):
TATATATTATTAGGTTTAGTGTTTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATATATTTTT
AAAAAAATAAGTTTATAGCTATTTTATTAGTAATTTAAGATTAGGTTATATAATTGTTAGTGTTT
AGTGGTTTAGTATTAACGTATTGTAATTTTTTTAGTAATATATTTTAAAAAAATAATTTTATAGC
TATTTTATTAGTAATTTAAAATTAGT
Found at i:106374692 original size:15 final size:16
Alignment explanation
Indices: 106374663--106374694 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
106374653 TGTGATTTTT
106374663 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
106374679 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
106374694 T
1 T
106374695 TATTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:106380781 original size:42 final size:42
Alignment explanation
Indices: 106380717--106380797 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
106380707 CACAGCCATA
*
106380717 TGGGGTGACCATGTGTGGCACACGACTGTGTGACAGACCGTG
1 TGGGGTGACCATGTGTGACACACGACTGTGTGACAGACCGTG
* * *
106380759 TGGGGTGACCGTGTGTGACACACGATTGTGTGATAGACC
1 TGGGGTGACCATGTGTGACACACGACTGTGTGACAGACC
106380798 TTGTTTAGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.37, T:0.23
Consensus pattern (42 bp):
TGGGGTGACCATGTGTGACACACGACTGTGTGACAGACCGTG
Found at i:106384208 original size:17 final size:17
Alignment explanation
Indices: 106384173--106384210 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
106384163 CAATGGTGGA
*
106384173 TTGGAATTTTCTACTTT
1 TTGGAATTTTCTACGTT
106384190 TTGG-ATTTTCTATCGTT
1 TTGGAATTTTCTA-CGTT
106384207 TTGG
1 TTGG
106384211 TTTATGTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.13, C:0.11, G:0.18, T:0.58
Consensus pattern (17 bp):
TTGGAATTTTCTACGTT
Found at i:106385865 original size:27 final size:28
Alignment explanation
Indices: 106385834--106385913 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 28
106385824 TTAATATTAC
*
106385834 ACATATTTATTTAATAATAAAATAAAA-
1 ACATATATATTTAATAATAAAATAAAAT
* * ***
106385861 ACATATGTAATTAATAA-GCGATAAAAT
1 ACATATATATTTAATAATAAAATAAAAT
*
106385888 A-ATATATATTTTATAATAAAATAAAA
1 ACATATATATTTAATAATAAAATAAAA
106385914 GTGATGTAAG
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (28 bp):
ACATATATATTTAATAATAAAATAAAAT
Found at i:106385985 original size:21 final size:21
Alignment explanation
Indices: 106385961--106386006 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
106385951 TAATAAAATT
106385961 TATAAACGAAATAT-ATAA-TAA
1 TATAAAC--AATATGATAAGTAA
106385982 TATAAACAATATGATAAGTAA
1 TATAAACAATATGATAAGTAA
106386003 TATA
1 TATA
106386007 TAAAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.22
20 4 0.17
21 14 0.61
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (21 bp):
TATAAACAATATGATAAGTAA
Found at i:106386013 original size:21 final size:18
Alignment explanation
Indices: 106385969--106386018 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 18
106385959 TTTATAAACG
106385969 AAATATATAATAATATAA
1 AAATATATAATAATATAA
106385987 ACAATATGATAAGTAATATATA
1 A-AATAT-ATAA-TAATATA-A
106386009 AAATAATATA
1 AAAT-ATATA
106386019 TATTTATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 1 0.04
19 5 0.19
20 4 0.15
21 13 0.48
22 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (18 bp):
AAATATATAATAATATAA
Found at i:106386021 original size:16 final size:16
Alignment explanation
Indices: 106386002--106386063 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
106385992 ATGATAAGTA
106386002 ATATATAAAATAATAT
1 ATATATAAAATAATAT
* * *
106386018 ATATTTATAATAAAAT
1 ATATATAAAATAATAT
** *
106386034 ATAGGTAACATAATAT
1 ATATATAAAATAATAT
*
106386050 ATA-ATAATATAATA
1 ATATATAAAATAATA
106386064 AAAAAATACA
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
15 9 0.25
16 27 0.75
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (16 bp):
ATATATAAAATAATAT
Found at i:106387789 original size:16 final size:16
Alignment explanation
Indices: 106387768--106387799 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
106387758 TGCAGTGGCT
106387768 TTGGTTGAAAGTTTCA
1 TTGGTTGAAAGTTTCA
106387784 TTGGTTGAAAGTTTCA
1 TTGGTTGAAAGTTTCA
106387800 AGTGGCTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.25, T:0.44
Consensus pattern (16 bp):
TTGGTTGAAAGTTTCA
Found at i:106396449 original size:85 final size:85
Alignment explanation
Indices: 106396301--106396508 Score: 201
Period size: 85 Copynumber: 2.4 Consensus size: 85
106396291 TAAGTCTTTG
* * **
106396301 TTTTTTTACACTCAATTGAGTACTTGAACTTTTAAAATGCATAAAAATGCCCCCAATTTTTTTTC
1 TTTTTTTACACTCAATTGAGTACTTGAACTTTCAAAATGCATAAAAAGGCCCCCAATACTTTTTC
106396366 AAAAAAAGTAATAAAGGCAT
66 AAAAAAAGTAATAAAGGCAT
* * ** *
106396386 TTTTTTTGCACTCAATT-ATGTATTTGAACTTTCAAAATGCATAAAAAAGGTTCTCAA-ACTTTT
1 TTTTTTTACACTCAATTGA-GTACTTGAACTTTCAAAATGCAT-AAAAAGGCCCCCAATACTTTT
**
106396449 TC-AAAAAA-TAATTAAATCCCTACT
64 TCAAAAAAAGTAA-TAAA-GGC-A-T
* *
106396473 TTTTTTTACACTTAATTG-GATACTTGAACTGTCAAA
1 TTTTTTTACACTCAATTGAG-TACTTGAACTTTCAAA
106396509 TTACAAAAAA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
83 3 0.03
84 11 0.11
85 44 0.44
86 12 0.12
87 30 0.30
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (85 bp):
TTTTTTTACACTCAATTGAGTACTTGAACTTTCAAAATGCATAAAAAGGCCCCCAATACTTTTTC
AAAAAAAGTAATAAAGGCAT
Found at i:106396661 original size:19 final size:20
Alignment explanation
Indices: 106396636--106396683 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
106396626 AAATGTTAAA
106396636 AATAAAAATCGA-TAAATTTT
1 AATAAAAAT-GATTAAATTTT
*
106396656 -ATAAAAATTATTAAATTTT
1 AATAAAAATGATTAAATTTT
106396675 AATAAAAAT
1 AATAAAAAT
106396684 ATAAAAATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
AATAAAAATGATTAAATTTT
Found at i:106396666 original size:9 final size:9
Alignment explanation
Indices: 106396654--106396775 Score: 59
Period size: 9 Copynumber: 12.9 Consensus size: 9
106396644 TCGATAAATT
106396654 TTATAAAAA
1 TTATAAAAA
**
106396663 TTATTAAATT
1 TTA-TAAAAA
106396673 TTAATAAAAA
1 TT-ATAAAAA
106396683 -TATAAAAA
1 TTATAAAAA
106396691 TCGTA-AAAAA
1 T--TATAAAAA
*
106396701 TTAGAAAAA
1 TTATAAAAA
*
106396710 TCATAAAAA
1 TTATAAAAA
**
106396719 CCATAAAAA
1 TTATAAAAA
* *
106396728 ATATAAAATTT
1 TTATAAAA--A
**
106396739 TTATAAATT
1 TTATAAAAA
106396748 TTATAAAAAA
1 TTAT-AAAAA
*
106396758 TTGTAAAAAA
1 TTAT-AAAAA
106396768 TTATAAAA
1 TTATAAAA
106396776 TATACAGAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
8 9 0.10
9 39 0.44
10 31 0.35
11 9 0.10
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.33
Consensus pattern (9 bp):
TTATAAAAA
Found at i:106396691 original size:20 final size:19
Alignment explanation
Indices: 106396649--106396689 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
106396639 AAAAATCGAT
*
106396649 AAATTTTATAAAAATTATT
1 AAATTTTATAAAAATTATA
106396668 AAATTTTAATAAAAA-TATA
1 AAATTTT-ATAAAAATTATA
106396687 AAA
1 AAA
106396690 ATCGTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAATTTTATAAAAATTATA
Found at i:106396700 original size:19 final size:19
Alignment explanation
Indices: 106396678--106396735 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
106396668 AAATTTTAAT
* *
106396678 AAAAATATAAAAATCGTAA
1 AAAAATAGAAAAATCATAA
*
106396697 AAAATTAGAAAAATCATAA
1 AAAAATAGAAAAATCATAA
*
106396716 AAACCATA-AAAAAT-ATAA
1 AAA-AATAGAAAAATCATAA
106396734 AA
1 AA
106396736 TTTTTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
18 6 0.18
19 25 0.76
20 2 0.06
ACGTcount: A:0.71, C:0.07, G:0.03, T:0.19
Consensus pattern (19 bp):
AAAAATAGAAAAATCATAA
Found at i:106396872 original size:40 final size:39
Alignment explanation
Indices: 106396722--106396876 Score: 118
Period size: 40 Copynumber: 3.9 Consensus size: 39
106396712 ATAAAAACCA
* * *
106396722 TAAAAAATATAAAATTTTTATA-AATTTTATAAAAAATTG
1 TAAAAAATATAAAATTTGTA-AGAAATTTATAAAAAAATG
* * * *
106396761 TAAAAAATTATAAAA--TATACAGAAATATAGAAAAAAATA
1 TAAAAAA-TATAAAATTTGTA-AGAAATTTATAAAAAAATG
* * * * *
106396800 TATAAAATTTTATAAAGTCGTAAGAAAATTATAAAAAAATG
1 TA-AAAAATATA-AAATTTGTAAGAAATTTATAAAAAAATG
*
106396841 TAAAGAAATATAAAATTTGTAATAAATTTATAAAAA
1 TAAA-AAATATAAAATTTGTAAGAAATTTATAAAAA
106396877 GTATTGTACC
Statistics
Matches: 88, Mismatches: 21, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
38 4 0.05
39 24 0.27
40 36 0.41
41 22 0.25
42 2 0.02
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (39 bp):
TAAAAAATATAAAATTTGTAAGAAATTTATAAAAAAATG
Found at i:106397085 original size:19 final size:19
Alignment explanation
Indices: 106397063--106397134 Score: 81
Period size: 19 Copynumber: 3.7 Consensus size: 19
106397053 TTTTAATACG
*
106397063 TTTTATATTTTTTTATGAT
1 TTTTATATTTTTTTACGAT
*** *
106397082 TTTTATAAGATTTTACAATT
1 TTTTATATTTTTTTACGA-T
106397102 TTTTATATTTTTTTACGAT
1 TTTTATATTTTTTTACGAT
*
106397121 TTCTATATTTTTTT
1 TTTTATATTTTTTT
106397135 CTACTCTTTT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
19 27 0.64
20 15 0.36
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.68
Consensus pattern (19 bp):
TTTTATATTTTTTTACGAT
Found at i:106397177 original size:27 final size:28
Alignment explanation
Indices: 106397140--106397202 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
106397130 TTTTTCTACT
*
106397140 CTTTTAATAAAATTTAAATA-TTTTAT-A
1 CTTTTATTAAAATTT-AATAGTTTTATAA
*
106397167 TTTTTATTAAAATTTAATAGTTTTATAA
1 CTTTTATTAAAATTTAATAGTTTTATAA
106397195 CTTTTATT
1 CTTTTATT
106397203 TTTTATAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 4 0.13
27 19 0.61
28 8 0.26
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (28 bp):
CTTTTATTAAAATTTAATAGTTTTATAA
Found at i:106397190 original size:20 final size:20
Alignment explanation
Indices: 106397153--106397192 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
106397143 TTAATAAAAT
*
106397153 TTAAATATTTTATATTTTTA
1 TTAAATATTTAATATTTTTA
*
106397173 TTAAA-ATTTAATAGTTTTA
1 TTAAATATTTAATATTTTTA
106397192 T
1 T
106397193 AACTTTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (20 bp):
TTAAATATTTAATATTTTTA
Found at i:106402785 original size:20 final size:19
Alignment explanation
Indices: 106402762--106402808 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
106402752 TATTTCTTAA
106402762 AATTAAAACTCAATTCTACC
1 AATTAAAACTCAATTC-ACC
* *
106402782 AATTCAAAACTCCATTCAGC
1 AATT-AAAACTCAATTCACC
106402802 AATTAAA
1 AATTAAA
106402809 CATGAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (19 bp):
AATTAAAACTCAATTCACC
Found at i:106405753 original size:23 final size:21
Alignment explanation
Indices: 106405727--106405772 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
106405717 TTTTGAGCAA
* *
106405727 TTTAATTTTTTCTTTTATGTTCT
1 TTTAACTTCTTCTTTT-T-TTCT
106405750 TTTAACTTCTTCTTTTTTTCT
1 TTTAACTTCTTCTTTTTTTCT
106405771 TT
1 TT
106405773 ATTTTCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 1 0.05
23 14 0.67
ACGTcount: A:0.11, C:0.13, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTAACTTCTTCTTTTTTTCT
Found at i:106406135 original size:15 final size:14
Alignment explanation
Indices: 106406115--106406164 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 14
106406105 TAACACAGTT
106406115 ATATAAATGATTAAA
1 ATATAAAT-ATTAAA
*
106406130 ATAT-AATATTTTAA
1 ATATAAATA-TTAAA
106406144 ATATAAATAATTAAA
1 ATATAAAT-ATTAAA
106406159 ATATAA
1 ATATAA
106406165 CTTTAAAGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 11 0.37
15 17 0.57
16 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
ATATAAATATTAAA
Found at i:106408885 original size:52 final size:52
Alignment explanation
Indices: 106408808--106408916 Score: 132
Period size: 52 Copynumber: 2.1 Consensus size: 52
106408798 CTACAGATTA
* * * * * *
106408808 TTAACTCTTCTAAGTAGTGTTTTTCTCATGTAA-ACCTGTTCTGCTCTTATTG
1 TTAACTCTTCTAAATAGTGTATTTCTCAAG-AATACCAGTTCTACTCCTATTG
106408860 TTAACT-TTCTAAATAGTGCTATTTCTCAAGAATACCAGTTCTACTCCTATTG
1 TTAACTCTTCTAAATAGTG-TATTTCTCAAGAATACCAGTTCTACTCCTATTG
106408912 TTAAC
1 TTAAC
106408917 CATAGTACTG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
51 13 0.27
52 36 0.73
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (52 bp):
TTAACTCTTCTAAATAGTGTATTTCTCAAGAATACCAGTTCTACTCCTATTG
Found at i:106408959 original size:50 final size:52
Alignment explanation
Indices: 106408900--106408997 Score: 155
Period size: 50 Copynumber: 1.9 Consensus size: 52
106408890 AATACCAGTT
*
106408900 CTACTCCTATTGTTAACCATAGT-ACTGAT-CTTTTTCTCATGTAACACCAA
1 CTACTCCTATTGTTAACCATAGTAACTGATGCCTTTTCTCATGTAACACCAA
* *
106408950 CTACTCCTATTGTTAACCCTAGTAACTGGTGCCTTTTCTCATGTAACA
1 CTACTCCTATTGTTAACCATAGTAACTGATGCCTTTTCTCATGTAACA
106408998 GTTGTATTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 22 0.51
51 5 0.12
52 16 0.37
ACGTcount: A:0.26, C:0.27, G:0.10, T:0.38
Consensus pattern (52 bp):
CTACTCCTATTGTTAACCATAGTAACTGATGCCTTTTCTCATGTAACACCAA
Found at i:106413377 original size:23 final size:23
Alignment explanation
Indices: 106413348--106413393 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
106413338 TTTGCTAATC
*
106413348 ATCGTTTTTATTTAATTAATTTT
1 ATCGTTTTTATTCAATTAATTTT
106413371 ATCGTTTTTATTCAATTAATTTT
1 ATCGTTTTTATTCAATTAATTTT
106413394 CTAATACAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (23 bp):
ATCGTTTTTATTCAATTAATTTT
Found at i:106413484 original size:11 final size:11
Alignment explanation
Indices: 106413468--106413502 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
106413458 TTTAAATTAA
106413468 ATTATTTAAAT
1 ATTATTTAAAT
106413479 ATTATTTAAATT
1 ATTATTTAAA-T
106413491 ATTATTTTAAAT
1 ATTA-TTTAAAT
106413503 TAAAAATTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.45
12 6 0.27
13 6 0.27
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTATTTAAAT
Found at i:106418356 original size:2 final size:2
Alignment explanation
Indices: 106418349--106418380 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
106418339 AACTTGTTAA
106418349 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
106418381 ATATATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:106418416 original size:2 final size:2
Alignment explanation
Indices: 106418380--106418408 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
106418370 TCTCTCTCTC
106418380 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106418409 TCATATATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106422568 original size:28 final size:29
Alignment explanation
Indices: 106422521--106422583 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
106422511 TTTTATATAT
* *
106422521 TTTTAATATTTTTTACA-TTTTAATTAAA
1 TTTTAATATTTTTTAAATTTTTAAATAAA
*
106422549 TTTTAAT-TTTTTTATAATTTTTAAATAAT
1 TTTTAATATTTTTTA-AATTTTTAAATAAA
106422578 TTTTAA
1 TTTTAA
106422584 ATGATTTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 7 0.23
28 8 0.27
29 15 0.50
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (29 bp):
TTTTAATATTTTTTAAATTTTTAAATAAA
Found at i:106422583 original size:11 final size:11
Alignment explanation
Indices: 106422552--106422591 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
106422542 AATTAAATTT
**
106422552 TAATTTTTTTA
1 TAATTTTTAAA
106422563 TAATTTTTAAA
1 TAATTTTTAAA
106422574 TAATTTTTAAA
1 TAATTTTTAAA
*
106422585 TGATTTT
1 TAATTTT
106422592 GAAGAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (11 bp):
TAATTTTTAAA
Found at i:106427961 original size:14 final size:14
Alignment explanation
Indices: 106427942--106427978 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
106427932 TATCTTCATT
106427942 TATACAATAGCACA
1 TATACAATAGCACA
106427956 TATACAATAGCACA
1 TATACAATAGCACA
106427970 TATACAATA
1 TATACAATA
106427979 CCATTTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.51, C:0.19, G:0.05, T:0.24
Consensus pattern (14 bp):
TATACAATAGCACA
Done.