Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 344 of 425
Found at i:106428263 original size:42 final size:42
Alignment explanation
Indices: 106428204--106428287 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
106428194 TTCGTTTATA
106428204 ACCCTATTAACCAACATAGACTCAGAACGAATACACAGATCC
1 ACCCTATTAACCAACATAGACTCAGAACGAATACACAGATCC
106428246 ACCCTATTAACCAACATAGACTCAGAACGAATACACAGATCC
1 ACCCTATTAACCAACATAGACTCAGAACGAATACACAGATCC
106428288 GTCATTCCGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.43, C:0.31, G:0.10, T:0.17
Consensus pattern (42 bp):
ACCCTATTAACCAACATAGACTCAGAACGAATACACAGATCC
Found at i:106433516 original size:48 final size:47
Alignment explanation
Indices: 106433464--106433577 Score: 183
Period size: 48 Copynumber: 2.4 Consensus size: 47
106433454 AGGTGGAAGA
*
106433464 ATGTGGCAGTTTATTTGCAAAAGTGGTGGCTTGTCCACAAATTTTATT
1 ATGTGGCAGTTTATTTGCAAAAGTGGTGGCTTGTCCAC-AATTTGATT
*
106433512 ATGTGGCAGTATATTTGCAAAAGTGGTGGCTTGTCCACAATTTGATT
1 ATGTGGCAGTTTATTTGCAAAAGTGGTGGCTTGTCCACAATTTGATT
* *
106433559 ATGTGGAAGTTTATCTGCA
1 ATGTGGCAGTTTATTTGCA
106433578 TTACCGTGAC
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
47 24 0.39
48 37 0.61
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (47 bp):
ATGTGGCAGTTTATTTGCAAAAGTGGTGGCTTGTCCACAATTTGATT
Found at i:106449103 original size:12 final size:12
Alignment explanation
Indices: 106449072--106449103 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
106449062 ATTAAATATT
106449072 TATA-ATTTAAA
1 TATATATTTAAA
106449083 TAT-TATTTAAA
1 TATATATTTAAA
106449094 TATATATTTA
1 TATATATTTA
106449104 TTACTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 13 0.68
12 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TATATATTTAAA
Found at i:106453751 original size:27 final size:27
Alignment explanation
Indices: 106453713--106453766 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
106453703 TAAAACCCTA
106453713 AACTTTTCTCAATAAAAATCTAAATTT
1 AACTTTTCTCAATAAAAATCTAAATTT
106453740 AACTTTTCTCAATAAAAATCTAAATTT
1 AACTTTTCTCAATAAAAATCTAAATTT
106453767 TCTTTTCACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (27 bp):
AACTTTTCTCAATAAAAATCTAAATTT
Found at i:106453784 original size:27 final size:27
Alignment explanation
Indices: 106453713--106453784 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
106453703 TAAAACCCTA
*
106453713 AACTTTTCTCAATAAAAATCTAAATTT
1 AACTTTTCACAATAAAAATCTAAATTT
*
106453740 AACTTTTCTCAATAAAAATCTAAATTT
1 AACTTTTCACAATAAAAATCTAAATTT
* *
106453767 -TCTTTTCACTATAGAAAA
1 AACTTTTCACAATA-AAAA
106453785 ATTAAAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 10 0.24
27 31 0.76
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.40
Consensus pattern (27 bp):
AACTTTTCACAATAAAAATCTAAATTT
Found at i:106455647 original size:30 final size:30
Alignment explanation
Indices: 106455613--106455670 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
106455603 CACCGGCTGG
*
106455613 CACATGGGCGTGTAGCCAG-CCTGTGTGGCT
1 CACATGGGCATGTAGCCAGTCC-GTGTGGCT
*
106455643 CACATGGGCATGTGGCCAGTCCGTGTGG
1 CACATGGGCATGTAGCCAGTCCGTGTGG
106455671 ATCCTAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.14, C:0.26, G:0.38, T:0.22
Consensus pattern (30 bp):
CACATGGGCATGTAGCCAGTCCGTGTGGCT
Found at i:106460103 original size:37 final size:40
Alignment explanation
Indices: 106460062--106460162 Score: 112
Period size: 37 Copynumber: 2.7 Consensus size: 40
106460052 TAATATTACT
106460062 TTAATAGTTTAATATTAAATTTAAT-TT-AA-T-ACTTATC
1 TTAATAGTTTAATATTAAATTTAATATTAAAGTGA-TTATC
*
106460099 TTAATAGTATT-TTATT-AATTTAATATTAAAGTGATTATC
1 TTAATAGT-TTAATATTAAATTTAATATTAAAGTGATTATC
106460138 TTAATA--TTAA-ATTAAATTTAATATT
1 TTAATAGTTTAATATTAAATTTAATATT
106460163 TATTTTGTAG
Statistics
Matches: 55, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
36 13 0.24
37 25 0.45
38 4 0.07
39 12 0.22
40 1 0.02
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (40 bp):
TTAATAGTTTAATATTAAATTTAATATTAAAGTGATTATC
Found at i:106463150 original size:27 final size:28
Alignment explanation
Indices: 106463120--106463189 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
106463110 ATAATAAGTC
*
106463120 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
106463147 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
106463175 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
106463190 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:106471225 original size:27 final size:28
Alignment explanation
Indices: 106471195--106471264 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
106471185 ATAATAAGTC
*
106471195 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
106471222 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
106471250 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
106471265 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:106480357 original size:27 final size:27
Alignment explanation
Indices: 106480309--106480467 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
106480299 GCGAGGCTGC
* *
106480309 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
106480336 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
106480362 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
106480389 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
106480416 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
106480443 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
106480468 GACGCTTCCT
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 102 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:106480402 original size:54 final size:54
Alignment explanation
Indices: 106480327--106480467 Score: 248
Period size: 54 Copynumber: 2.6 Consensus size: 54
106480317 GTGACGAAGT
*
106480327 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
106480381 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
106480435 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
106480468 GACGCTTCCT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:106487374 original size:27 final size:26
Alignment explanation
Indices: 106487326--106487484 Score: 194
Period size: 27 Copynumber: 5.9 Consensus size: 26
106487316 GCGAGGCTGC
* *
106487326 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
*
106487352 GCAGATATTGTGGCAGAGCCACCAGAA
1 -CAGATATTGTGGCAGAGCCACCAGAT
106487379 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* * *
106487406 CAGATAATCGTGGCATAGCCACCAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
106487433 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
*
106487460 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
106487485 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
26 9 0.08
27 102 0.88
28 5 0.04
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:106487419 original size:54 final size:54
Alignment explanation
Indices: 106487344--106487484 Score: 248
Period size: 54 Copynumber: 2.6 Consensus size: 54
106487334 GTGACGAAGT
*
106487344 CACCAGATGCAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
106487398 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
106487452 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
106487485 GACGCTTCCT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:106489689 original size:19 final size:20
Alignment explanation
Indices: 106489667--106489713 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
106489657 TGATGGACTT
* *
106489667 TAATGCATATG-ATGTAATG
1 TAATGCAAATGTATGAAATG
*
106489686 TAATACAAATGTATGAAATG
1 TAATGCAAATGTATGAAATG
106489706 -AATGCAAA
1 TAATGCAAA
106489714 AAGGTGTCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.47, C:0.06, G:0.17, T:0.30
Consensus pattern (20 bp):
TAATGCAAATGTATGAAATG
Found at i:106500728 original size:17 final size:17
Alignment explanation
Indices: 106500706--106500738 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
106500696 CAGCCAATAC
*
106500706 ACCATATTTTGTCTGGT
1 ACCATAATTTGTCTGGT
106500723 ACCATAATTTGTCTGG
1 ACCATAATTTGTCTGG
106500739 CATGGGTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.42
Consensus pattern (17 bp):
ACCATAATTTGTCTGGT
Found at i:106502848 original size:30 final size:28
Alignment explanation
Indices: 106502813--106502882 Score: 74
Period size: 30 Copynumber: 2.5 Consensus size: 28
106502803 AAAAATGGAG
106502813 ATAAATATATAAAAAAAATCATAAAAATAT
1 ATAAATATATAAAAAAAA-CATAAAAAT-T
* *
106502843 ATAAAT-TCTAGAAAAAAACATATAAATT
1 ATAAATATATA-AAAAAAACATAAAAATT
106502871 ATAAA-A-ATAAAA
1 ATAAATATATAAAA
106502883 TTTACAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
26 3 0.09
27 2 0.06
28 6 0.17
29 11 0.31
30 13 0.37
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (28 bp):
ATAAATATATAAAAAAAACATAAAAATT
Found at i:106502960 original size:18 final size:18
Alignment explanation
Indices: 106502934--106502970 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
106502924 TAATAATCTT
106502934 ATTACAAAAATTGTAAAA
1 ATTACAAAAATTGTAAAA
*
106502952 ATTATAAAAATTGTAAAA
1 ATTACAAAAATTGTAAAA
106502970 A
1 A
106502971 AATATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (18 bp):
ATTACAAAAATTGTAAAA
Found at i:106502969 original size:8 final size:9
Alignment explanation
Indices: 106502939--106502970 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
106502929 ATCTTATTAC
106502939 AAAAATTGT
1 AAAAATTGT
*
106502948 AAAAATTAT
1 AAAAATTGT
106502957 AAAAATTGT
1 AAAAATTGT
106502966 AAAAA
1 AAAAA
106502971 AATATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (9 bp):
AAAAATTGT
Found at i:106503005 original size:19 final size:16
Alignment explanation
Indices: 106502966--106503000 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
106502956 TAAAAATTGT
106502966 AAAA-AAATATTTTAA
1 AAAATAAATATTTTAA
106502981 AAAATAAATATTATTAA
1 AAAATAAATATT-TTAA
106502998 AAA
1 AAA
106503001 CAATATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 7 0.39
17 7 0.39
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAAATAAATATTTTAA
Found at i:106506681 original size:37 final size:37
Alignment explanation
Indices: 106506631--106506755 Score: 126
Period size: 37 Copynumber: 3.4 Consensus size: 37
106506621 GCTTTATTTT
* * * * *
106506631 AGTATATCTGTAGATTTTACTCGTTTGAGCTCCATTC
1 AGTATAACAGTAGAATTTGCTCGTTTGAGCTACATTC
* * *
106506668 AGTATAACAGTAGAATTTGCTCATTTGAGCTTCACTC
1 AGTATAACAGTAGAATTTGCTCGTTTGAGCTACATTC
* *
106506705 AGTATAACAGT-GAAATTTGCTTGTTTGAGCTACTTTC
1 AGTATAACAGTAG-AATTTGCTCGTTTGAGCTACATTC
*
106506742 AGTAGAACCAGTAG
1 AGTATAA-CAGTAG
106506756 GTATGGCTTG
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
36 1 0.01
37 66 0.92
38 4 0.06
39 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (37 bp):
AGTATAACAGTAGAATTTGCTCGTTTGAGCTACATTC
Found at i:106506832 original size:19 final size:18
Alignment explanation
Indices: 106506808--106506847 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
106506798 TCAATAAAGT
106506808 ATATTAACAGAGAGCATAA
1 ATATTAACAGA-AGCATAA
**
106506827 ATATTATTAGAAGCATAA
1 ATATTAACAGAAGCATAA
106506845 ATA
1 ATA
106506848 AACGTACGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (18 bp):
ATATTAACAGAAGCATAA
Found at i:106509810 original size:73 final size:73
Alignment explanation
Indices: 106509724--106509869 Score: 274
Period size: 73 Copynumber: 2.0 Consensus size: 73
106509714 TCAAGTTCTG
106509724 GTAGTGAGAATAATTAATATGGCTATCTCTTTTATGATTATTATATAGCCACTTACTACATCCAC
1 GTAGTGAGAATAATTAATATGGCTATCTCTTTTATGATTATTATATAGCCACTTACTACATCCAC
*
106509789 GTTAAAGA
66 GTCAAAGA
*
106509797 GTAGTGAGAATAATTAATATGGCTATCTCTTTTATGATTATTATATAGCCACTTACTACATCCAT
1 GTAGTGAGAATAATTAATATGGCTATCTCTTTTATGATTATTATATAGCCACTTACTACATCCAC
106509862 GTCAAAGA
66 GTCAAAGA
106509870 TTTTTTATAT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (73 bp):
GTAGTGAGAATAATTAATATGGCTATCTCTTTTATGATTATTATATAGCCACTTACTACATCCAC
GTCAAAGA
Found at i:106517615 original size:26 final size:25
Alignment explanation
Indices: 106517544--106517652 Score: 71
Period size: 26 Copynumber: 4.3 Consensus size: 25
106517534 CTATATAACG
* *
106517544 GGAAGCTCATAAGAGCC-GTAATCA
1 GGAAGCTCACAAGAGCCTTTAATCA
* * * *
106517568 GGAAGTTCACATAAAACTTTTAATCA
1 GGAAGCTCACA-AGAGCCTTTAATCA
*
106517594 GGAAGCTCACAGAGAGCCTTTAAAT-G
1 GGAAGCTCACA-AGAGCCTTT-AATCA
* * *
106517620 GGAAGCTCATGAAGAGCCATTAATTA
1 GGAAGCTCA-CAAGAGCCTTTAATCA
106517646 GG-AGCTC
1 GGAAGCTC
106517653 CAGATAGCCA
Statistics
Matches: 65, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
24 9 0.14
25 11 0.17
26 41 0.63
27 4 0.06
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (25 bp):
GGAAGCTCACAAGAGCCTTTAATCA
Found at i:106537759 original size:45 final size:45
Alignment explanation
Indices: 106537653--106537910 Score: 148
Period size: 45 Copynumber: 5.7 Consensus size: 45
106537643 GTGGCTTGAA
* *
106537653 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACTGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGACACTATGCTGG
* * * * *
106537698 GAGTGAATTAGGCCATAGTTGAAAGACACTATGACACTATGCTAG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGACACTATGCTGG
* * * ** * * * * **
106537743 AAATGAGTAAGACCATAGCTAAAAGATGCTACGGCA-TCACGATTC
1 AAATGAATAAGACCATAGTTGAAAGACACTATGACACT-ATGCTGG
* * * * * * * *
106537788 AAA-CAAGTAAAGACCATAGCTAAAAGACGCTATAACA-TCACGAT-T
1 AAATGAA-T-AAGACCATAGTTGAAAGACACTATGACACT-ATGCTGG
* ** * *
106537833 CAATGTGTATGACCATAGTTGAAAGACATTATGACAAC-ATGCTGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGAC-ACTATGCTGG
*
106537878 AAATAAATAAGACCATAGTTGAAAGACACTATG
1 AAATGAATAAGACCATAGTTGAAAGACACTATG
106537911 GCATCATATC
Statistics
Matches: 158, Mismatches: 48, Indels: 14
0.72 0.22 0.06
Matches are distributed among these distances:
44 26 0.16
45 101 0.64
46 31 0.20
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGACACTATGCTGG
Found at i:106539620 original size:80 final size:80
Alignment explanation
Indices: 106539503--106539701 Score: 233
Period size: 80 Copynumber: 2.5 Consensus size: 80
106539493 TGTTTGACGA
* * *
106539503 CGATTTAGAATAGCTTCGGCTATATATGGCACTTAGTGT-ATGATTCTAA-ATAGTTTCGGCTAT
1 CGATTTAGAATAGCTTTGGCTATATATGGCACTTAGTGTCAAGA-TC-AAGATAGCTTCGGCTAT
106539566 AT-ATAGCACTTAGTGTG
64 ATAATA-CACTTAGTGTG
* * * *
106539583 TGATTTGGAGTAGCTTTGGCTATATATGGCACTTAGTGTGCAAGATCAAGATAGCTTCGGCTATG
1 CGATTTAGAATAGCTTTGGCTATATATGGCACTTAGTGT-CAAGATCAAGATAGCTTCGGCTATA
106539648 TAATACACTTAGTGTG
65 TAATACACTTAGTGTG
* * *
106539664 CGAGATTATAATAGCTTTGGCTATGTATTGGCACTTAG
1 CGA-TTTAGAATAGCTTTGGCTATATA-TGGCACTTAG
106539702 CGTGCGTGAT
Statistics
Matches: 100, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
80 37 0.37
81 29 0.29
82 24 0.24
83 10 0.10
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.36
Consensus pattern (80 bp):
CGATTTAGAATAGCTTTGGCTATATATGGCACTTAGTGTCAAGATCAAGATAGCTTCGGCTATAT
AATACACTTAGTGTG
Found at i:106539622 original size:40 final size:39
Alignment explanation
Indices: 106539504--106539622 Score: 150
Period size: 40 Copynumber: 3.0 Consensus size: 39
106539494 GTTTGACGAC
* *
106539504 GATTTAGAATAGCTTCGGCTATATATGGCACTTAGTGTAT
1 GATTT-GAATAGCTTTGGCTATATATGGCACTTAGTGTGT
* *
106539544 GATTCTAAATAG-TTTCGGCTATATATAGCACTTAGTGTGT
1 GATT-TGAATAGCTTT-GGCTATATATGGCACTTAGTGTGT
*
106539584 GATTTGGAGTAGCTTTGGCTATATATGGCACTTAGTGTG
1 GATTT-GAATAGCTTTGGCTATATATGGCACTTAGTGTG
106539623 CAAGATCAAG
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
39 3 0.04
40 61 0.90
41 4 0.06
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (39 bp):
GATTTGAATAGCTTTGGCTATATATGGCACTTAGTGTGT
Found at i:106539657 original size:41 final size:41
Alignment explanation
Indices: 106539612--106539690 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 41
106539602 CTATATATGG
106539612 CACTTAGTGTGCAAGATCA-AGATAGCTTCGGCTATGTAATA
1 CACTTAGTGTGCAAGATCATA-ATAGCTTCGGCTATGTAATA
* * *
106539653 CACTTAGTGTGCGAGATTATAATAGCTTTGGCTATGTA
1 CACTTAGTGTGCAAGATCATAATAGCTTCGGCTATGTA
106539691 TTGGCACTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 33 0.97
42 1 0.03
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (41 bp):
CACTTAGTGTGCAAGATCATAATAGCTTCGGCTATGTAATA
Found at i:106541497 original size:13 final size:13
Alignment explanation
Indices: 106541481--106541552 Score: 63
Period size: 13 Copynumber: 5.5 Consensus size: 13
106541471 ATAAAAAGAA
106541481 TATATGAAATGAT
1 TATATGAAATGAT
** *
106541494 TATATGAACCGGT
1 TATATGAAATGAT
*
106541507 TATATGGAAATAAT
1 TATAT-GAAATGAT
* *
106541521 TATATAAAATGTT
1 TATATGAAATGAT
* *
106541534 TATACGAAATGTT
1 TATATGAAATGAT
106541547 TATATG
1 TATATG
106541553 GATAGATACA
Statistics
Matches: 45, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
13 36 0.80
14 9 0.20
ACGTcount: A:0.42, C:0.04, G:0.15, T:0.39
Consensus pattern (13 bp):
TATATGAAATGAT
Found at i:106541510 original size:26 final size:26
Alignment explanation
Indices: 106541481--106541552 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 26
106541471 ATAAAAAGAA
*
106541481 TATATGAAATGATTATATGAACCGGT
1 TATATGAAATGATTATATGAAACGGT
* * * *
106541507 TATATGGAAATAATTATATAAAATGTT
1 TATAT-GAAATGATTATATGAAACGGT
* *
106541534 TATACGAAATGTTTATATG
1 TATATGAAATGATTATATG
106541553 GATAGATACA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 16 0.44
27 20 0.56
ACGTcount: A:0.42, C:0.04, G:0.15, T:0.39
Consensus pattern (26 bp):
TATATGAAATGATTATATGAAACGGT
Found at i:106541609 original size:14 final size:14
Alignment explanation
Indices: 106541590--106541617 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106541580 AATTAATGTT
106541590 TGAAATGTTAAATG
1 TGAAATGTTAAATG
106541604 TGAAATGTTAAATG
1 TGAAATGTTAAATG
106541618 AATAGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (14 bp):
TGAAATGTTAAATG
Found at i:106555706 original size:19 final size:19
Alignment explanation
Indices: 106555628--106555728 Score: 94
Period size: 20 Copynumber: 5.2 Consensus size: 19
106555618 CATTATAGAT
* *
106555628 GTGTAACAGAGCCACCAAA
1 GTGTAACAGAGGCACCGAA
* *
106555647 GTGCAGACAGAGGCATCGAA
1 GTGTA-ACAGAGGCACCGAA
* * *
106555667 GTGCAAACAGAGACACTGAA
1 GTG-TAACAGAGGCACCGAA
*
106555687 GTGTAATAGAGGCACCGAA
1 GTGTAACAGAGGCACCGAA
*
106555706 GTGTGAACAGAGGCACCAAA
1 GTGT-AACAGAGGCACCGAA
106555726 GTG
1 GTG
106555729 GAAACCCGTA
Statistics
Matches: 65, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
19 20 0.31
20 44 0.68
21 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.30, T:0.12
Consensus pattern (19 bp):
GTGTAACAGAGGCACCGAA
Found at i:106555728 original size:39 final size:40
Alignment explanation
Indices: 106555627--106555728 Score: 107
Period size: 39 Copynumber: 2.5 Consensus size: 40
106555617 GCATTATAGA
* *
106555627 TGTGTAACAGAGCCACCAAAGTGCAGACAGAGGCATCGAAG
1 TGTG-AACAGAGACACCAAAGTGCAGACAGAGGCACCGAAG
** ** * *
106555668 TGCAAACAGAGACACTGAAGTGTA-ATAGAGGCACCGAAG
1 TGTGAACAGAGACACCAAAGTGCAGACAGAGGCACCGAAG
*
106555707 TGTGAACAGAGGCACCAAAGTG
1 TGTGAACAGAGACACCAAAGTG
106555729 GAAACCCGTA
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
39 30 0.62
40 16 0.33
41 2 0.04
ACGTcount: A:0.38, C:0.20, G:0.29, T:0.13
Consensus pattern (40 bp):
TGTGAACAGAGACACCAAAGTGCAGACAGAGGCACCGAAG
Found at i:106559219 original size:20 final size:20
Alignment explanation
Indices: 106559196--106559240 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
106559186 TTATATCCTT
*
106559196 TTTCTTTCTTTCCTTCTCTG
1 TTTCTTTCTATCCTTCTCTG
* * *
106559216 TTTCATTCTATCTTTCTCTT
1 TTTCTTTCTATCCTTCTCTG
106559236 TTTCT
1 TTTCT
106559241 ATTTCTATTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.04, C:0.27, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTCTTTCTATCCTTCTCTG
Found at i:106559260 original size:17 final size:18
Alignment explanation
Indices: 106559232--106559266 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
106559222 TCTATCTTTC
106559232 TCTTTTTCTATTTCTATT
1 TCTTTTTCTATTTCTATT
*
106559250 TCTTTTT-TATTTTTATT
1 TCTTTTTCTATTTCTATT
106559267 ATAATATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (18 bp):
TCTTTTTCTATTTCTATT
Found at i:106559274 original size:5 final size:5
Alignment explanation
Indices: 106559266--106559309 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
106559256 TTATTTTTAT
106559266 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
106559310 TACTTAAACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:106561482 original size:2 final size:2
Alignment explanation
Indices: 106561475--106561503 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
106561465 GTGAAAGTCA
106561475 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106561504 AAGTGATGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106562754 original size:38 final size:38
Alignment explanation
Indices: 106562695--106562814 Score: 152
Period size: 38 Copynumber: 3.1 Consensus size: 38
106562685 ATTTGATGTG
* *
106562695 TATCCGGGCTTAAAGACCCGCAGGCTTTATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTTATGCTGGTATTA
* **
106562735 TATCCGTGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTTATGCTGGTATTA
*
106562773 TATCCGGGTTAAATCCCGCAGGC-CTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTTA-TGCTGGTATTA
106562811 TATC
1 TATC
106562815 TGAGTTTAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
38 58 0.83
39 5 0.07
40 7 0.10
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTTATGCTGGTATTA
Found at i:106562842 original size:39 final size:37
Alignment explanation
Indices: 106562711--106562850 Score: 156
Period size: 38 Copynumber: 3.7 Consensus size: 37
106562701 GGCTTAAAGA
** *
106562711 CCCGCAGGCTTTATGCTGGAATTATATCCGTGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCG-GTTAAAT
106562749 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCC-GGTTAAAT
* * *
106562787 CCCGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCG-G-TTAAA-T
* *
106562827 -CCGTAGGCTTCGTGCTGGTGTTAT
1 CCCGCAGGCTTCGTGCTGGTATTAT
106562851 GTTCGGGTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
37 1 0.01
38 60 0.68
39 26 0.30
40 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.34
Consensus pattern (37 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGTTAAAT
Found at i:106562843 original size:77 final size:77
Alignment explanation
Indices: 106562695--106562859 Score: 192
Period size: 77 Copynumber: 2.1 Consensus size: 77
106562685 ATTTGATGTG
* *
106562695 TATCCGGGCTTAAAGACCCGCAGGCTTTATGCTGGAATTATATCCGTGTTAAATCCCGCAGGCTT
1 TATCCGGG-TTAAAGACCCGCAGGCTCTATGCTGGAATTATATCCGAGTTAAATCCCGCAGGCTT
106562760 CGTGCTGGTATTA
65 CGTGCTGGTATTA
* * * *
106562773 TATCCGGGTTAAA-TCCCGCAGGC-CTAGTGCTGGTATTATATCTGAGTTTAAAGT-CCGTAGGC
1 TATCCGGGTTAAAGACCCGCAGGCTCTA-TGCTGGAATTATATCCGAG-TTAAA-TCCCGCAGGC
*
106562835 TTCGTGCTGGTGTTA
63 TTCGTGCTGGTATTA
* *
106562850 TGTTCGGGTT
1 TATCCGGGTT
106562860 TTATACCTCG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
75 2 0.03
76 25 0.33
77 39 0.52
78 9 0.12
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (77 bp):
TATCCGGGTTAAAGACCCGCAGGCTCTATGCTGGAATTATATCCGAGTTAAATCCCGCAGGCTTC
GTGCTGGTATTA
Found at i:106564652 original size:57 final size:58
Alignment explanation
Indices: 106564543--106564653 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
106564533 CGAATGATTA
* *
106564543 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCTTTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
* * *
106564601 GAGGCACTGTGTGTGCGAGTTC-TTCAACCAAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCTTTCAACCAAGCACTATGTGTGCGAAATCGGT
106564654 CAGTGGGCAC
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 28 0.58
58 20 0.42
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCTTTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
Found at i:106567721 original size:2 final size:2
Alignment explanation
Indices: 106567714--106567746 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
106567704 TGAAAGTCGA
106567714 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106567747 AAGTGATGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106569011 original size:38 final size:37
Alignment explanation
Indices: 106568969--106569089 Score: 107
Period size: 38 Copynumber: 3.1 Consensus size: 37
106568959 TTATGCTTTA
*
106568969 ATTATATCCGTGTTAAATCCTGCAGGCTTCGTGCTGGT
1 ATTATATCCG-GTTAAATCCCGCAGGCTTCGTGCTGGT
* * * * *
106569007 ATTATATCCAGGTTAAACCCCACGGGCCTAGTGCTGGT
1 ATTATATCC-GGTTAAATCCCGCAGGCTTCGTGCTGGT
* * *
106569045 ATTATATCTGAGTTTAAAGTCCCGTAGGCTTCATGCTGGT
1 ATTATATCCG-G-TTAAA-TCCCGCAGGCTTCGTGCTGGT
*
106569085 GTTAT
1 ATTAT
106569090 GTTCGGGTTT
Statistics
Matches: 64, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.02
38 39 0.61
39 6 0.09
40 18 0.28
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (37 bp):
ATTATATCCGGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:106570151 original size:25 final size:25
Alignment explanation
Indices: 106570123--106570173 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
106570113 TATTTACGGC
106570123 TCAGTTTATAAAAACAAGGTCCCGA
1 TCAGTTTATAAAAACAAGGTCCCGA
* *
106570148 TCAGTTTATAAAAATAAGGTCTCGA
1 TCAGTTTATAAAAACAAGGTCCCGA
106570173 T
1 T
106570174 ACCTTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (25 bp):
TCAGTTTATAAAAACAAGGTCCCGA
Found at i:106570180 original size:24 final size:25
Alignment explanation
Indices: 106570128--106570180 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
106570118 ACGGCTCAGT
**
106570128 TTATAAAAACAAGGTCCCGATCAGT
1 TTATAAAAACAAGGTCCCGATCACC
* *
106570153 TTATAAAAATAAGGTCTCGAT-ACC
1 TTATAAAAACAAGGTCCCGATCACC
106570177 TTAT
1 TTAT
106570181 TTTCTAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (25 bp):
TTATAAAAACAAGGTCCCGATCACC
Found at i:106570871 original size:9 final size:9
Alignment explanation
Indices: 106570857--106570898 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
106570847 GCTCAGGGGT
106570857 ATTTTAGTA
1 ATTTTAGTA
106570866 ATTTTAGTA
1 ATTTTAGTA
**
106570875 ATTTTAAAA
1 ATTTTAGTA
106570884 ATTTTAGTA
1 ATTTTAGTA
106570893 ATTTTA
1 ATTTTA
106570899 CAAATCGAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (9 bp):
ATTTTAGTA
Found at i:106570880 original size:18 final size:18
Alignment explanation
Indices: 106570865--106570903 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
106570855 GTATTTTAGT
106570865 AATTTTAGTAATTTTAAA
1 AATTTTAGTAATTTTAAA
*
106570883 AATTTTAGTAATTTTACA
1 AATTTTAGTAATTTTAAA
106570901 AAT
1 AAT
106570904 CGAGGGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (18 bp):
AATTTTAGTAATTTTAAA
Found at i:106570914 original size:27 final size:27
Alignment explanation
Indices: 106570884--106571085 Score: 228
Period size: 27 Copynumber: 7.3 Consensus size: 27
106570874 AATTTTAAAA
* *
106570884 ATTTTAGTAATTTTACAAATCGAGGGT
1 ATTTTGGTAATTTTACAAATCAAGGGT
**
106570911 ATTTCAGTAATTTTACAAATTAGACCAAGGGT
1 ATTTTGGTAATTTTACAAA-T----CAAGGGT
* *
106570943 ATTTTGGTAATTTCACAAATCAGGGGT
1 ATTTTGGTAATTTTACAAATCAAGGGT
* *
106570970 ATTTTGGTAATCTTACAAACCAAGGGT
1 ATTTTGGTAATTTTACAAATCAAGGGT
*
106570997 ATTTTGGTAATTTTACAAA-CCAGGAGT
1 ATTTTGGTAATTTTACAAATCAAGG-GT
*
106571024 ATTTTGGTAATTTTACAAA-CCAGGAGT
1 ATTTTGGTAATTTTACAAATCAAGG-GT
*
106571051 ATTTTGGTAATTTTACAAACCAAGGGT
1 ATTTTGGTAATTTTACAAATCAAGGGT
106571078 ATTTTGGT
1 ATTTTGGT
106571086 GATTAGGTAA
Statistics
Matches: 155, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
26 4 0.03
27 123 0.79
28 5 0.03
31 1 0.01
32 22 0.14
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
ATTTTGGTAATTTTACAAATCAAGGGT
Found at i:106571067 original size:81 final size:84
Alignment explanation
Indices: 106570884--106571085 Score: 268
Period size: 81 Copynumber: 2.4 Consensus size: 84
106570874 AATTTTAAAA
* * * **
106570884 ATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTAGACCAAGGGTATTTTG
1 ATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC-AA-TAGACCAAGGGTATTTTG
* *
106570949 GTAATTTCACAAATCAGGGGT
64 GTAATTTCACAAACCAGGAGT
*
106570970 ATTTTGGTAATCTTACAAACCAAGGGTATTTTGGTAATTTTAC-A-A-ACC-AGGAGTATTTTGG
1 ATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAATAGACCAAGG-GTATTTTGG
*
106571031 TAATTTTACAAACCAGGAGT
65 TAATTTCACAAACCAGGAGT
106571051 ATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
1 ATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
106571086 GATTAGGTAA
Statistics
Matches: 105, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
80 3 0.03
81 63 0.60
82 1 0.01
84 1 0.01
86 37 0.35
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (84 bp):
ATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAATAGACCAAGGGTATTTTGGT
AATTTCACAAACCAGGAGT
Found at i:106573058 original size:6 final size:6
Alignment explanation
Indices: 106573040--106573105 Score: 73
Period size: 6 Copynumber: 10.8 Consensus size: 6
106573030 AAGAAACATT
*
106573040 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
*
106573089 ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAG
106573106 GTAACAAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
5 2 0.04
6 45 0.87
7 4 0.08
8 1 0.02
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:106573087 original size:31 final size:31
Alignment explanation
Indices: 106573049--106573123 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
106573039 TATCAGAACT
*
106573049 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
106573080 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
106573111 AAAATCAAAATCA
1 AGAATCAGAATCA
106573124 AAATGTGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:106573297 original size:28 final size:26
Alignment explanation
Indices: 106573242--106573323 Score: 92
Period size: 28 Copynumber: 3.0 Consensus size: 26
106573232 AGCATTGCTG
* * *
106573242 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
*
106573268 CCAGATACAGATATTTGTGGCATAGCCA
1 CCAGA-ACAGATA-TTGTGGCAAAGCCA
*
106573296 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAAAGCCA
106573323 C
1 C
106573324 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 5 0.10
27 21 0.44
28 22 0.46
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:106573529 original size:22 final size:22
Alignment explanation
Indices: 106573481--106573539 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
106573471 GTAAATACGT
*
106573481 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
106573503 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
106573525 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
106573540 CGATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:106573917 original size:27 final size:27
Alignment explanation
Indices: 106573887--106574163 Score: 340
Period size: 27 Copynumber: 10.3 Consensus size: 27
106573877 GGGGCAAAAT
* * *
106573887 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
106573914 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
106573941 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
106573968 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
106573995 AGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
106574022 GGTAATTCTACCTTACAGGAGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
106574049 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
106574076 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
106574103 AATAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
106574130 GATAATTCTACCTTACAAGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
106574157 GGTAATT
1 GGTAATT
106574164 TTGTAAATCG
Statistics
Matches: 213, Mismatches: 36, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 212 1.00
28 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:106574213 original size:27 final size:26
Alignment explanation
Indices: 106574157--106574245 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 26
106574147 AGGGTGTTTC
* **
106574157 GGTAATTTTGTAAATCGAAGGTAAAAT
1 GGTAA-TTTGTAAATCGAGGGTAATTT
*
106574184 GGTAATTCTGTAAATCGAGGGTACTTT
1 GGTAATT-TGTAAATCGAGGGTAATTT
*
106574211 GGTAATTT-TACAAGTCGAGGGTATTTT
1 GGTAATTTGTA-AA-TCGAGGGTAATTT
*
106574238 AGTAATTT
1 GGTAATTT
106574246 TACAAATCAG
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.04
26 5 0.09
27 46 0.87
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (26 bp):
GGTAATTTGTAAATCGAGGGTAATTT
Found at i:106574414 original size:27 final size:27
Alignment explanation
Indices: 106574208--106574402 Score: 259
Period size: 27 Copynumber: 7.2 Consensus size: 27
106574198 TCGAGGGTAC
* *
106574208 TTTGGTAATTTTACAAGTCGAGG-GTAT
1 TTTGGTAATTTTACAA-ACCAGGAGTAT
* * *
106574235 TTTAGTAATTTTACAAATCAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGAGTAT
* * * *
106574262 TTCGATAATTTTACAAATCAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGAGTAT
*
106574289 TTCGGTAATTTTACAAACCAAGG-GTAT
1 TTTGGTAATTTTACAAACC-AGGAGTAT
*
106574316 TTTGGTAATTTTACAAACTAGGAGTAT
1 TTTGGTAATTTTACAAACCAGGAGTAT
106574343 TTTGGTAATTTTACAAACCAGGAGTAT
1 TTTGGTAATTTTACAAACCAGGAGTAT
106574370 TTTGGTAATTTTACAAACCAGGAGTAT
1 TTTGGTAATTTTACAAACCAGGAGTAT
106574397 TTTGGT
1 TTTGGT
106574403 GATTAGGTAA
Statistics
Matches: 153, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.04
27 144 0.94
28 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TTTGGTAATTTTACAAACCAGGAGTAT
Found at i:106582846 original size:19 final size:19
Alignment explanation
Indices: 106582822--106582861 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
106582812 ATTAAATGAC
106582822 TAGTGTGAGTAATGCTTTT
1 TAGTGTGAGTAATGCTTTT
106582841 TAGTGTGAGTAATGCTTTT
1 TAGTGTGAGTAATGCTTTT
106582860 TA
1 TA
106582862 ATGACGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.05, G:0.25, T:0.47
Consensus pattern (19 bp):
TAGTGTGAGTAATGCTTTT
Found at i:106588255 original size:17 final size:17
Alignment explanation
Indices: 106588232--106588270 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
106588222 TTTTAAAAAG
106588232 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
*
106588249 GAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
106588266 AAAAC
1 AAAAC
106588271 TTAATGAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.21
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:106590308 original size:44 final size:44
Alignment explanation
Indices: 106590251--106590339 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
106590241 GGATTTCTCG
106590251 AGCCTGGACAGATGATCAGCCGCGAGATTTTCAGCTCCTTTCTT
1 AGCCTGGACAGATGATCAGCCGCGAGATTTTCAGCTCCTTTCTT
106590295 AGCCTGGACAGATGATCAGCCGCGAGATTTTCAGCTCCTTTCTT
1 AGCCTGGACAGATGATCAGCCGCGAGATTTTCAGCTCCTTTCTT
106590339 A
1 A
106590340 TCCTAAATCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.29
Consensus pattern (44 bp):
AGCCTGGACAGATGATCAGCCGCGAGATTTTCAGCTCCTTTCTT
Found at i:106597918 original size:21 final size:21
Alignment explanation
Indices: 106597877--106597919 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
106597867 GAGAAGAGGA
* *
106597877 AGAAAGGTAGAAAATATAGAG
1 AGAAAGGTAGAAAAGAAAGAG
106597898 AGAAAGG-AGAAAGAGAAAGAG
1 AGAAAGGTAGAAA-AGAAAGAG
106597919 A
1 A
106597920 AATTTGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.60, C:0.00, G:0.33, T:0.07
Consensus pattern (21 bp):
AGAAAGGTAGAAAAGAAAGAG
Found at i:106604101 original size:53 final size:53
Alignment explanation
Indices: 106603971--106604093 Score: 162
Period size: 53 Copynumber: 2.3 Consensus size: 53
106603961 ATTTTGTGCT
* **
106603971 ACATGATA-TTGGTTTTACGAAGGTTCGGATGAATTGTATGGGGAATGTATATG
1 ACATGATATTTGGTTTTGCGAAGGTTCGGATGAATTGTATGAAGAA-GTATATG
* *
106604024 -CATGATATTTGGCTTTGCGAAGGTTCGGGTGAATTGTATGAAGAA-TATATG
1 ACATGATATTTGGTTTTGCGAAGGTTCGGATGAATTGTATGAAGAAGTATATG
106604075 CACATGATATTTGGTTTTG
1 -ACATGATATTTGGTTTTG
106604094 TGGAGGTTTG
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
51 6 0.10
52 7 0.11
53 48 0.79
ACGTcount: A:0.27, C:0.07, G:0.28, T:0.37
Consensus pattern (53 bp):
ACATGATATTTGGTTTTGCGAAGGTTCGGATGAATTGTATGAAGAAGTATATG
Found at i:106606498 original size:27 final size:27
Alignment explanation
Indices: 106606457--106606526 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
106606447 CTAGTCTGAA
*
106606457 CCCATGTTTAATGTCCTGGT-GAACTTC
1 CCCATGTTTAATGTCCTGGTAG-ACTAC
*
106606484 CCCATGTTTACTGTCCTGGTAGACTAC
1 CCCATGTTTAATGTCCTGGTAGACTAC
*
106606511 CCCATGTTTATTGTCC
1 CCCATGTTTAATGTCC
106606527 CAATGGACTA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.37
Consensus pattern (27 bp):
CCCATGTTTAATGTCCTGGTAGACTAC
Found at i:106609269 original size:14 final size:14
Alignment explanation
Indices: 106609247--106609277 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
106609237 TAATTTCATT
*
106609247 TATTTTATAATATA
1 TATTATATAATATA
106609261 TATTATATAATATA
1 TATTATATAATATA
106609275 TAT
1 TAT
106609278 ACATACTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTATATAATATA
Found at i:106611318 original size:17 final size:18
Alignment explanation
Indices: 106611292--106611325 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
106611282 AAGATTTTCC
106611292 AAATTCATTT-TTCAAAA
1 AAATTCATTTATTCAAAA
*
106611309 AAATTTATTTATTCAAA
1 AAATTCATTTATTCAAA
106611326 TTTTCTAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATTCATTTATTCAAAA
Found at i:106614336 original size:7 final size:7
Alignment explanation
Indices: 106614324--106614388 Score: 50
Period size: 7 Copynumber: 9.7 Consensus size: 7
106614314 TTTAGTCATT
106614324 TTTTTAA
1 TTTTTAA
106614331 TTTTT-A
1 TTTTTAA
106614337 -TTTTAA
1 TTTTTAA
*
106614343 TATTTTAG
1 T-TTTTAA
*
106614351 TTTTTAG
1 TTTTTAA
106614358 TTTTTAA
1 TTTTTAA
106614365 -TTTT-A
1 TTTTTAA
106614370 TTTTTACA
1 TTTTTA-A
*
106614378 -TTCTAA
1 TTTTTAA
106614384 TTTTT
1 TTTTT
106614389 CTTTTGTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
5 5 0.11
6 11 0.23
7 24 0.51
8 7 0.15
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (7 bp):
TTTTTAA
Found at i:106614354 original size:20 final size:19
Alignment explanation
Indices: 106614325--106614375 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
106614315 TTAGTCATTT
106614325 TTTTAATTTTTA-TTTTAATA
1 TTTT-ATTTTTAGTTTTAA-A
*
106614345 TTTTAGTTTTTAGTTTTTAA
1 TTTTA-TTTTTAGTTTTAAA
106614365 TTTTATTTTTA
1 TTTTATTTTTA
106614376 CATTCTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 7 0.25
20 16 0.57
21 5 0.18
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.73
Consensus pattern (19 bp):
TTTTATTTTTAGTTTTAAA
Found at i:106614362 original size:14 final size:13
Alignment explanation
Indices: 106614324--106614375 Score: 54
Period size: 12 Copynumber: 4.0 Consensus size: 13
106614314 TTTAGTCATT
106614324 TTTTTAATTTTTA
1 TTTTTAATTTTTA
106614337 -TTTTAATATTTTA
1 TTTTTAAT-TTTTA
*
106614350 GTTTTTAGTTTTTA
1 -TTTTTAATTTTTA
*
106614364 ATTTT-ATTTTTA
1 TTTTTAATTTTTA
106614376 CATTCTAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 13 0.39
13 9 0.27
14 5 0.15
15 6 0.18
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (13 bp):
TTTTTAATTTTTA
Found at i:106623543 original size:18 final size:18
Alignment explanation
Indices: 106623502--106623563 Score: 74
Period size: 18 Copynumber: 3.5 Consensus size: 18
106623492 TATCAATATC
*
106623502 ATTCAATAA-AATCAATT
1 ATTCAGTAACAATCAATT
* *
106623519 TTTCAGTAGCAAT-AAGTT
1 ATTCAGTAACAATCAA-TT
106623537 ATTCAGTAACAATCAATT
1 ATTCAGTAACAATCAATT
106623555 ATTCAGTAA
1 ATTCAGTAA
106623564 TAGTTAGTCG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 8 0.22
18 27 0.73
19 2 0.05
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (18 bp):
ATTCAGTAACAATCAATT
Found at i:106624528 original size:12 final size:11
Alignment explanation
Indices: 106624488--106624528 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
106624478 TTAATATTTA
106624488 AATTTCTTATTC
1 AATTTC-TATTC
106624500 AATTTCTATTC
1 AATTTCTATTC
*
106624511 AATTTCTACTTT
1 AATTTCTA-TTC
106624523 AATTTC
1 AATTTC
106624529 AATTTTGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (11 bp):
AATTTCTATTC
Found at i:106625024 original size:2 final size:2
Alignment explanation
Indices: 106625017--106625062 Score: 69
Period size: 2 Copynumber: 24.0 Consensus size: 2
106625007 TCATTTCTTT
106625017 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
106625057 TT TA TA
1 TA TA TA
106625063 ATAAATATCT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 2 0.05
2 38 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:106625063 original size:12 final size:12
Alignment explanation
Indices: 106625017--106625070 Score: 58
Period size: 12 Copynumber: 4.4 Consensus size: 12
106625007 TCATTTCTTT
106625017 TATATAT-ATATA
1 TATATATAATA-A
106625029 TATATATATATATA
1 TATATATA-ATA-A
106625043 TATATATAATAA
1 TATATATAATAA
*
106625055 TATTTATAATAA
1 TATATATAATAA
106625067 -ATAT
1 TATAT
106625071 CTTTTTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
11 3 0.08
12 19 0.50
13 3 0.08
14 13 0.34
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TATATATAATAA
Found at i:106625867 original size:3 final size:3
Alignment explanation
Indices: 106625859--106625896 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
106625849 AACTTATTTC
106625859 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
106625897 CTAAATTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:106626805 original size:43 final size:41
Alignment explanation
Indices: 106626703--106626806 Score: 111
Period size: 41 Copynumber: 2.5 Consensus size: 41
106626693 TGTGTGAAAT
* * *
106626703 ATGTAAGACCATGTCTAGGACATTGGCATCGTATATGATTC
1 ATGTAAGACCATGTCTGGGACAATGGCATCGTATATGATGC
* * *
106626744 GTGTAAGGCCCTGTCTGGGACAATGGCATC-TATATGTGATAGC
1 ATGTAAGACCATGTCTGGGACAATGGCATCGTATA--TGAT-GC
*
106626787 ATGTAAGACCATATCTGGGA
1 ATGTAAGACCATGTCTGGGA
106626807 TATGACATTG
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
40 4 0.08
41 25 0.50
42 4 0.08
43 17 0.34
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (41 bp):
ATGTAAGACCATGTCTGGGACAATGGCATCGTATATGATGC
Found at i:106645840 original size:21 final size:21
Alignment explanation
Indices: 106645814--106645873 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
106645804 GTGTGGAAGG
106645814 AGGCACACGACCGTGTGACAA-
1 AGGCACACGACCGTGTGA-AAC
106645835 AGGCACACG-CTCGTGTGAAAC
1 AGGCACACGAC-CGTGTGAAAC
*
106645856 AGGGACACGACCGTGTGA
1 AGGCACACGACCGTGTGA
106645874 GCAGATCGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
20 3 0.09
21 31 0.89
22 1 0.03
ACGTcount: A:0.30, C:0.27, G:0.32, T:0.12
Consensus pattern (21 bp):
AGGCACACGACCGTGTGAAAC
Found at i:106657659 original size:50 final size:50
Alignment explanation
Indices: 106657598--106657796 Score: 371
Period size: 50 Copynumber: 4.0 Consensus size: 50
106657588 TTTTACTTGC
106657598 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
1 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
106657648 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
1 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
106657698 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
1 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
* * *
106657748 CACTTGTCATTGATCAGATAAGTGTACCCGAAGCTATCACTTATCACTT
1 CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
106657797 GTTGTCATGG
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 146 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (50 bp):
CATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
Found at i:106658118 original size:2 final size:2
Alignment explanation
Indices: 106658111--106658140 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
106658101 CAAGTCATTC
106658111 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106658141 TACTTTTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106661548 original size:5 final size:5
Alignment explanation
Indices: 106661538--106661598 Score: 122
Period size: 5 Copynumber: 12.2 Consensus size: 5
106661528 AAGTAAATAT
106661538 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
106661588 TATTA TATTA T
1 TATTA TATTA T
106661599 TATAATAAAC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 56 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:106661681 original size:11 final size:10
Alignment explanation
Indices: 106661620--106661703 Score: 51
Period size: 11 Copynumber: 7.7 Consensus size: 10
106661610 TAAAAGAAAT
*
106661620 GAAAGAAATA
1 GAAAGAAAAA
106661630 GAAATAGAAAATA
1 G-AA-AGAAAA-A
***
106661643 GAAAGAAGTT
1 GAAAGAAAAA
*
106661653 GAAACAAAACA
1 GAAAGAAAA-A
*
106661664 GATAGAAAAA
1 GAAAGAAAAA
106661674 GGAAAGAAAAA
1 -GAAAGAAAAA
106661685 GAAAGGAGAAAA
1 GAAA-GA-AAAA
106661697 GAAAGAA
1 GAAAGAA
106661704 TGAAAATTAG
Statistics
Matches: 56, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
10 13 0.23
11 26 0.46
12 15 0.27
13 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.23, T:0.07
Consensus pattern (10 bp):
GAAAGAAAAA
Found at i:106664542 original size:26 final size:29
Alignment explanation
Indices: 106664503--106664556 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 29
106664493 AAATACTTTC
*
106664503 TAATAATTTCATTTTTTTATA-TTTTTTG
1 TAATAATTTCATTTTTTTACACTTTTTTG
106664531 TAATAA-TT-ATTTTTTTACACTTTTTT
1 TAATAATTTCATTTTTTTACACTTTTTT
106664557 AAAAGTGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 10 0.42
27 8 0.33
28 6 0.25
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.67
Consensus pattern (29 bp):
TAATAATTTCATTTTTTTACACTTTTTTG
Found at i:106664603 original size:10 final size:9
Alignment explanation
Indices: 106664590--106664650 Score: 50
Period size: 9 Copynumber: 6.2 Consensus size: 9
106664580 TTTTTAAAAA
106664590 TTATACATTT
1 TTATA-ATTT
106664600 TTATAATTT
1 TTATAATTT
*
106664609 TATTTATATTT
1 T-TATA-ATTT
*
106664620 TTGGTAATTTT
1 TT-ATAA-TTT
*
106664631 TTATAATGT
1 TTATAATTT
106664640 TTATAATTT
1 TTATAATTT
106664649 TT
1 TT
106664651 TTTAGATGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
9 17 0.40
10 13 0.31
11 12 0.29
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.66
Consensus pattern (9 bp):
TTATAATTT
Found at i:106666369 original size:12 final size:12
Alignment explanation
Indices: 106666352--106666384 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
106666342 AAAAATTTAA
106666352 TTTAATAATTAT
1 TTTAATAATTAT
106666364 TTTAATAA-TAT
1 TTTAATAATTAT
*
106666375 TTTATTAATT
1 TTTAATAATT
106666385 TAATAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TTTAATAATTAT
Found at i:106666386 original size:19 final size:19
Alignment explanation
Indices: 106666359--106666395 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
106666349 TAATTTAATA
*
106666359 ATTATTTTAATAATATTTT
1 ATTAATTTAATAATATTTT
106666378 ATTAATTTAATAATATTT
1 ATTAATTTAATAATATTT
106666396 AATTTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTAATTTAATAATATTTT
Found at i:106669399 original size:23 final size:22
Alignment explanation
Indices: 106669373--106669422 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
106669363 CATTTAAATT
106669373 ATATTTACTATTTTAAAT-ATAAA
1 ATATTTA-T-TTTTAAATCATAAA
*
106669396 ATATTTATTTTTATATCATAAA
1 ATATTTATTTTTAAATCATAAA
106669418 A-ATTT
1 ATATTT
106669423 TAAAAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 11 0.44
22 7 0.28
23 7 0.28
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (22 bp):
ATATTTATTTTTAAATCATAAA
Found at i:106671206 original size:25 final size:24
Alignment explanation
Indices: 106671103--106671267 Score: 63
Period size: 25 Copynumber: 6.5 Consensus size: 24
106671093 AATTTAGCCC
*
106671103 TATTTTTTTATATATATATTTTTAT
1 TATTTTATTAT-TATATATTTTTAT
*
106671128 ATATTGTTATT-TTCTAT-TTTTTACCT
1 -TATT-TTATTATTATATATTTTTA--T
* **
106671154 TACTTTTA-TATTATACATTATAAGAT
1 TA-TTTTATTATTATATATT-T-TTAT
106671180 TATTTTATTATATATATATTTTTAT
1 TATTTTATTAT-TATATATTTTTAT
* * *
106671205 TATATCTTATTTTTCACAAATTATTGTTAT
1 TAT-T-TTATTATT---ATA-TATTTTTAT
*
106671235 TATTTTA-CATTAT-TATTTTTA-
1 TATTTTATTATTATATATTTTTAT
106671256 TATTATTATTAT
1 TATT-TTATTAT
106671268 ATCTTACTTG
Statistics
Matches: 104, Mismatches: 17, Indels: 39
0.65 0.11 0.24
Matches are distributed among these distances:
21 4 0.04
22 10 0.10
23 2 0.02
24 8 0.08
25 23 0.22
26 19 0.18
27 20 0.19
28 4 0.04
29 3 0.03
30 11 0.11
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (24 bp):
TATTTTATTATTATATATTTTTAT
Found at i:106671260 original size:14 final size:14
Alignment explanation
Indices: 106671231--106671265 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
106671221 CAAATTATTG
106671231 TTATTA-TTTTACA
1 TTATTATTTTTACA
*
106671244 TTATTATTTTTATA
1 TTATTATTTTTACA
106671258 TTATTATT
1 TTATTATT
106671266 ATATCTTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
TTATTATTTTTACA
Found at i:106684047 original size:205 final size:206
Alignment explanation
Indices: 106683581--106684085 Score: 854
Period size: 206 Copynumber: 2.5 Consensus size: 206
106683571 CGGAGAGCAG
*
106683581 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAAATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
* *
106683646 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCAGATACACA
66 TCTCTGAATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAACAGATACACA
* *
106683711 GTAGATCTGACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTT
131 GCAGATCTCACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTT
106683776 ACAAGGAACAA
196 ACAAGGAACAA
* *
106683787 ATCAAAGACGTAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
106683852 TCTCTGAATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAACAGATACACA
66 TCTCTGAATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAACAGATACACA
* * * *
106683917 GCAGATCTCACCTTCAGATGTTTATG-CTGAAG-TAGATCTAAGATGATTTGGCATCCTTGTGCT
131 GCAGATCTCACCTTCAGACGATTA-GACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCT
106683980 TACAAGGAACAA
195 TACAAGGAACAA
*
106683992 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
*
106684057 TCTCT-ATATTGTTAGAGAACAAATCGAAG
66 TCTCTGA-ATTGTCAGAGAACAAATCGAAG
106684086 AAGCAAATTT
Statistics
Matches: 282, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
204 1 0.00
205 129 0.46
206 151 0.54
207 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (206 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
TCTCTGAATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAACAGATACACA
GCAGATCTCACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTT
ACAAGGAACAA
Found at i:106685622 original size:2 final size:2
Alignment explanation
Indices: 106685615--106685659 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
106685605 AGCCCTATTT
*
106685615 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
106685657 TA T
1 TA T
106685660 TGTTATTTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:106685721 original size:18 final size:18
Alignment explanation
Indices: 106685698--106685736 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
106685688 TATATTATAC
106685698 ATTATA-AGATTATT-TT
1 ATTATATAGATTATTATT
*
106685714 ATTATATATATTATTATT
1 ATTATATAGATTATTATT
106685732 ATTAT
1 ATTAT
106685737 TATATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
17 7 0.35
18 7 0.35
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
ATTATATAGATTATTATT
Found at i:106686931 original size:19 final size:19
Alignment explanation
Indices: 106686907--106686945 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
106686897 TGTTTCGAGA
106686907 TAGGAATTTCCAAAAAGGG
1 TAGGAATTTCCAAAAAGGG
106686926 TAGGAATTTCCAAAAAGGG
1 TAGGAATTTCCAAAAAGGG
106686945 T
1 T
106686946 TAACTTAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.26, T:0.23
Consensus pattern (19 bp):
TAGGAATTTCCAAAAAGGG
Found at i:106687435 original size:16 final size:16
Alignment explanation
Indices: 106687414--106687444 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106687404 TATTTTATTT
*
106687414 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
106687430 ATATTAAGATAATTA
1 ATATTAAGATAATTA
106687445 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:106687473 original size:28 final size:27
Alignment explanation
Indices: 106687410--106687474 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
106687400 ACTCTATTTT
106687410 ATTTATATTAGGATAATTAAATATTAAG
1 ATTT-TATTAGGATAATTAAATATTAAG
* * * *
106687438 ATAATTATTAGGATTATTTAAATTTTAGG
1 AT-TTTATTAGGA-TAATTAAATATTAAG
106687467 ATTTTATT
1 ATTTTATT
106687475 TTAATTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (27 bp):
ATTTTATTAGGATAATTAAATATTAAG
Found at i:106693860 original size:5 final size:5
Alignment explanation
Indices: 106693829--106693913 Score: 59
Period size: 5 Copynumber: 16.6 Consensus size: 5
106693819 TTAATTTTCA
106693829 ATTTT ATTTCT ATTATT A-TTT -TTTT ATTTT ATTTCTT ATTTT ATTTT
1 ATTTT ATTT-T ATT-TT ATTTT ATTTT ATTTT A-TT-TT ATTTT ATTTT
* * * * *
106693876 ATTTC AATTT GTTTT ATTTT -TAATT ATTTT ATTGT ATT
1 ATTTT ATTTT ATTTT ATTTT AT-TTT ATTTT ATTTT ATT
106693914 AATAAAATTC
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
4 6 0.10
5 42 0.67
6 11 0.17
7 4 0.06
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (5 bp):
ATTTT
Found at i:106693892 original size:20 final size:18
Alignment explanation
Indices: 106693830--106693895 Score: 71
Period size: 20 Copynumber: 3.5 Consensus size: 18
106693820 TAATTTTCAA
*
106693830 TTTTATTTCTATTATTATTT
1 TTTTATTT-TATT-TCATTT
*
106693850 TTTTATTTTATTTC-TTA
1 TTTTATTTTATTTCATTT
106693867 TTTTATTTTATTTCAATTT
1 TTTTATTTTATTTC-ATTT
106693886 GTTTTATTTT
1 -TTTTATTTT
106693896 TAATTATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
17 16 0.40
18 1 0.03
19 6 0.15
20 17 0.43
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTTATTTTATTTCATTT
Found at i:106693900 original size:16 final size:16
Alignment explanation
Indices: 106693851--106693908 Score: 66
Period size: 15 Copynumber: 3.7 Consensus size: 16
106693841 TTATTATTTT
*
106693851 TTTATTTTATTTCTTAT
1 TTTATTTTATTT-TTAA
*
106693868 TTTATTTTA-TTTCAA
1 TTTATTTTATTTTTAA
*
106693883 TTTGTTTTATTTTTAA
1 TTTATTTTATTTTTAA
106693899 -TTATTTTATT
1 TTTATTTTATT
106693909 GTATTAATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 19 0.54
16 7 0.20
17 9 0.26
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTATTTTATTTTTAA
Found at i:106697170 original size:16 final size:16
Alignment explanation
Indices: 106697149--106697179 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106697139 CATTTTATTT
*
106697149 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
106697165 ATATTAAGATAATTA
1 ATATTAAGATAATTA
106697180 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:106697208 original size:28 final size:27
Alignment explanation
Indices: 106697145--106697209 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
106697135 ACTCCATTTT
106697145 ATTTATATTAGGATAATTAAATATTAAG
1 ATTT-TATTAGGATAATTAAATATTAAG
* * * *
106697173 ATAATTATTAGGATTATTTAAATTTTAGG
1 AT-TTTATTAGGA-TAATTAAATATTAAG
106697202 ATTTTATT
1 ATTTTATT
106697210 TTAATTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (27 bp):
ATTTTATTAGGATAATTAAATATTAAG
Found at i:106697224 original size:10 final size:10
Alignment explanation
Indices: 106697205--106697236 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
106697195 TTTTAGGATT
106697205 TTAT-TTTAA
1 TTATCTTTAA
106697214 TTATCTTTAA
1 TTATCTTTAA
106697224 TTATCTTTAA
1 TTATCTTTAA
106697234 TTA
1 TTA
106697237 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:106699063 original size:18 final size:18
Alignment explanation
Indices: 106699040--106699075 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
106699030 GTAATCAAGA
106699040 CCCATCGGCTTCAATCTT
1 CCCATCGGCTTCAATCTT
106699058 CCCATCGGCTTCAATCTT
1 CCCATCGGCTTCAATCTT
106699076 ACATTTATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.39, G:0.11, T:0.33
Consensus pattern (18 bp):
CCCATCGGCTTCAATCTT
Found at i:106699633 original size:52 final size:52
Alignment explanation
Indices: 106699571--106699674 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
106699561 AACAGGTTCA
106699571 TCTTTCACAAGTTCAATTTTTTTTTGAATTTAGATATGACTAACCGCTTTAC
1 TCTTTCACAAGTTCAATTTTTTTTTGAATTTAGATATGACTAACCGCTTTAC
*
106699623 TCTTTCACAAGTTCAATTTTTTTTTTAATTTAGATATGACTAACCGCTTTAC
1 TCTTTCACAAGTTCAATTTTTTTTTGAATTTAGATATGACTAACCGCTTTAC
106699675 CCCGCCTCTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.27, C:0.17, G:0.09, T:0.47
Consensus pattern (52 bp):
TCTTTCACAAGTTCAATTTTTTTTTGAATTTAGATATGACTAACCGCTTTAC
Found at i:106701961 original size:43 final size:43
Alignment explanation
Indices: 106701914--106702024 Score: 120
Period size: 41 Copynumber: 2.6 Consensus size: 43
106701904 CCTCAATTGA
* * **
106701914 GATTTACGTATAAGACCATGTCTGGGACATCGGCATCG-TATCT
1 GATTTACATGTAAGACCATGTCTGGGACAGAGGCATCGATAT-T
* *
106701957 GATTT--TTGTAAGACCCTGTCTGGGACAGAGGCATCGATATT
1 GATTTACATGTAAGACCATGTCTGGGACAGAGGCATCGATATT
* *
106701998 GAATTACATGTAAGACCACGTCTGGGA
1 GATTTACATGTAAGACCATGTCTGGGA
106702025 TGTCGGGATT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 31 0.55
42 3 0.05
43 22 0.39
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
GATTTACATGTAAGACCATGTCTGGGACAGAGGCATCGATATT
Found at i:106706134 original size:3 final size:3
Alignment explanation
Indices: 106706126--106706161 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
106706116 AGTAAAAAGA
106706126 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
106706162 GATGATGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:106706734 original size:24 final size:23
Alignment explanation
Indices: 106706699--106706743 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
106706689 TATTATATAT
106706699 TATATTATTATAACATAAAGTAAA
1 TATATTATTAT-ACATAAAGTAAA
*
106706723 TATATT-TCTATATATAAAGTA
1 TATATTAT-TATACATAAAGTA
106706744 TAAAAGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (23 bp):
TATATTATTATACATAAAGTAAA
Found at i:106710941 original size:64 final size:64
Alignment explanation
Indices: 106710868--106711078 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
106710858 CTGGGCCAGA
* *
106710868 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGACTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * ** * ** *
106710932 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGACTTA-GC---CCCTTATTCAGATAACA---GT
* *
106710994 ACTGGGCCAGA-
54 A-TGGCCCATAG
* *
106711005 GCCCTTTTCAGATTACAATAAACTGGGTCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGACTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
106711069 GCCCATTTCA
1 GCCCATTTCA
106711079 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGACTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:106711007 original size:137 final size:137
Alignment explanation
Indices: 106710834--106711120 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
106710824 TATTGGGCCT
**
106710834 AAGCCCATTCAGGTAACAATGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAATGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
106710899 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
*
106710964 CATATGC
131 CATATAC
* *
106710971 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGTCTT
1 AAGCCCATTTGGGTAACAATGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
106711036 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
106711101 CATATAC
131 CATATAC
106711108 AAGCCCATTTGGG
1 AAGCCCATTTGGG
106711121 GAGACTACTC
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAATGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATAC
Found at i:106712944 original size:26 final size:25
Alignment explanation
Indices: 106712908--106712991 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 25
106712898 CATGAAATTC
106712908 TTATCATGAAACATTTACCTAACTCA
1 TTATCATGAAACATTTACCTAAC-CA
106712934 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
*
106712960 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
106712986 TTATCA
1 TTATCA
106712992 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 52 0.95
27 1 0.02
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:106715027 original size:7 final size:7
Alignment explanation
Indices: 106715015--106715041 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
106715005 AAATTCACTA
106715015 TCCTTTG
1 TCCTTTG
106715022 TCCTTTG
1 TCCTTTG
106715029 TCCTTTG
1 TCCTTTG
106715036 TCCTTT
1 TCCTTT
106715042 ACAAATCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.30, G:0.11, T:0.59
Consensus pattern (7 bp):
TCCTTTG
Found at i:106728635 original size:21 final size:20
Alignment explanation
Indices: 106728577--106728640 Score: 76
Period size: 21 Copynumber: 3.2 Consensus size: 20
106728567 GTTTTCATTA
*
106728577 TTTTTAATAATTTTAATAAT
1 TTTTTAATATTTTTAATAAT
* * *
106728597 TTCTT-ATATTATTGATAAT
1 TTTTTAATATTTTTAATAAT
106728616 TTTTTACATATTTTTAATAAT
1 TTTTTA-ATATTTTTAATAAT
106728637 TTTT
1 TTTT
106728641 ATATTTATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
19 15 0.43
20 4 0.11
21 16 0.46
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTTTAATATTTTTAATAAT
Found at i:106731495 original size:48 final size:48
Alignment explanation
Indices: 106731438--106731652 Score: 242
Period size: 46 Copynumber: 4.6 Consensus size: 48
106731428 AAGCTGTCGC
106731438 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * ** * **
106731486 CATGTCCCAGACATGTCTTACTCTAGC-TCT-CGTCTCAAATCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * *
106731532 CATGTCCCAGACATGTCTTATACTGGCTTGTATATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * * *
106731580 CATGTCCTAGACATGTCTTACACTAGCTCT-CATA-AT-GTGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAGGCCGATG
*
106731626 TATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
106731653 ACACATATCA
Statistics
Matches: 137, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
46 67 0.49
47 5 0.04
48 64 0.47
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:106731661 original size:94 final size:94
Alignment explanation
Indices: 106731438--106731652 Score: 306
Period size: 94 Copynumber: 2.3 Consensus size: 94
106731428 AAGCTGTCGC
*
106731438 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
* * *
106731503 TTACTCTAGCTCTCGTCTCAAATCCGATG
66 TTACACTAGCTCTCATATCAAATCCGATG
* * *
106731532 CATGTCCCAGACATGTCTTATACTGGCTTGTATATCTCGAGGCCAATGCATGTCCTAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
****
106731597 TTACACTAGCTCTCATAATGTGGT-CGATG
66 TTACACTAGCTCTCAT-ATCAAATCCGATG
*
106731626 TATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
106731653 ACACATATCA
Statistics
Matches: 106, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
94 104 0.98
95 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
TTACACTAGCTCTCATATCAAATCCGATG
Found at i:106735783 original size:25 final size:25
Alignment explanation
Indices: 106735719--106735776 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
106735709 CTTTTCATTC
106735719 CCATATTCTCTGTTTCTTCTTGCTA
1 CCATATTCTCTGTTTCTTCTTGCTA
106735744 CCATATTCTCTGTTTCTTCTTGCTA
1 CCATATTCTCTGTTTCTTCTTGCTA
106735769 CCATATTC
1 CCATATTC
106735777 ACAGTTTGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.14, C:0.29, G:0.07, T:0.50
Consensus pattern (25 bp):
CCATATTCTCTGTTTCTTCTTGCTA
Found at i:106737791 original size:15 final size:15
Alignment explanation
Indices: 106737771--106737805 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
106737761 TGCTTATCCC
106737771 ACTCCTGAGTTTCCA
1 ACTCCTGAGTTTCCA
106737786 ACTCCTGAGTTTCCA
1 ACTCCTGAGTTTCCA
106737801 ACTCC
1 ACTCC
106737806 AAATTTTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.20, C:0.37, G:0.11, T:0.31
Consensus pattern (15 bp):
ACTCCTGAGTTTCCA
Found at i:106738023 original size:39 final size:40
Alignment explanation
Indices: 106737979--106738076 Score: 108
Period size: 46 Copynumber: 2.3 Consensus size: 40
106737969 TATTGAATGC
*
106737979 ATACTTTCAATTTACTAA-AATAATAGATGAGTCCGAGAG
1 ATACTTTCAATTTACCAATAATAATAGATGAGTCCGAGAG
**
106738018 ATACTTTCAATTTTTTACCAATCTTTCTAATAGATGAGTCCGAGAG
1 ATACTTTCAA---TTTACCAA---TAATAATAGATGAGTCCGAGAG
106738064 ATACTTTCAATTT
1 ATACTTTCAATTT
106738077 TTTACTAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
39 10 0.20
42 7 0.14
43 3 0.06
46 29 0.59
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (40 bp):
ATACTTTCAATTTACCAATAATAATAGATGAGTCCGAGAG
Found at i:106740375 original size:32 final size:32
Alignment explanation
Indices: 106740339--106740498 Score: 257
Period size: 32 Copynumber: 5.0 Consensus size: 32
106740329 TATAACTATG
*
106740339 CTACTTTTTTATATGTAAAACTAATGTATAAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
106740371 CTACTTTTTCATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
106740403 CTACTTTTTTATATGTGAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
*
106740435 CTACTTTTTTATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
*
106740467 CTACTTTTTTATATGTAAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
106740499 ATTTTTTATG
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 116 1.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (32 bp):
CTACTTTTTTATATGTAAAACTAATGTATGAT
Found at i:106740440 original size:64 final size:64
Alignment explanation
Indices: 106740339--106740498 Score: 284
Period size: 64 Copynumber: 2.5 Consensus size: 64
106740329 TATAACTATG
* *
106740339 CTACTTTTTTATATGTAAAACTAATGTATAATCTACTTTTTCATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGAT
* *
106740403 CTACTTTTTTATATGTGAACCTAATGTATGATCTACTTTTTTATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGAT
106740467 CTACTTTTTTATATGTAAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAACCTAATGTATGAT
106740499 ATTTTTTATG
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 91 1.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (64 bp):
CTACTTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGAT
Found at i:106742544 original size:21 final size:21
Alignment explanation
Indices: 106742492--106742546 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
106742482 ACCGCTGTTT
* *
106742492 CTAATCTCACAGCTACAGTAT
1 CTAATCTCACCGCTACAGTAA
*
106742513 CCAATCTCACCGCTACAGTAA
1 CTAATCTCACCGCTACAGTAA
106742534 CTAATCTCACCGC
1 CTAATCTCACCGC
106742547 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.36, G:0.09, T:0.24
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:106746770 original size:48 final size:48
Alignment explanation
Indices: 106746670--106746770 Score: 132
Period size: 48 Copynumber: 2.1 Consensus size: 48
106746660 CATTATCTTT
* * ***
106746670 ATATCTCGAGGCCGATGCATATCCCAGACATGTCTTACACTGGCTTGT
1 ATATCTCGAGACCGATGCATATCCCAGACATGTCTTACACTAGCTCAC
*
106746718 ATATCTCGAGACCGATGCATGTCCCAGACATGTCTTACACTAG-TACAC
1 ATATCTCGAGACCGATGCATATCCCAGACATGTCTTACACTAGCT-CAC
106746766 ATATC
1 ATATC
106746771 ACCCAATATC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 1 0.02
48 45 0.98
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
ATATCTCGAGACCGATGCATATCCCAGACATGTCTTACACTAGCTCAC
Found at i:106748045 original size:18 final size:18
Alignment explanation
Indices: 106748009--106748075 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
106747999 ACTAATTTTC
* * *
106748009 AAATTTTAAATTCATAAT
1 AAATTTAAAATTTAAAAT
106748027 AAATTTAAAATTTAAAAT
1 AAATTTAAAATTTAAAAT
**
106748045 AAAATAAACAAATTTAGAAGAT
1 -AAATTTA-AAATTTA-AA-AT
106748067 AAATTTAAA
1 AAATTTAAA
106748076 TCAAAATTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
18 15 0.39
19 5 0.13
20 9 0.24
21 7 0.18
22 2 0.05
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (18 bp):
AAATTTAAAATTTAAAAT
Found at i:106748694 original size:17 final size:18
Alignment explanation
Indices: 106748663--106748696 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
106748653 CTGAGAAATA
*
106748663 TATTTTTGGGCCAAAAAG
1 TATTTTTGAGCCAAAAAG
106748681 TATTTTTGAG-CAAAAA
1 TATTTTTGAGCCAAAAA
106748697 TTAAAGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (18 bp):
TATTTTTGAGCCAAAAAG
Found at i:106749624 original size:16 final size:17
Alignment explanation
Indices: 106749595--106749636 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
106749585 TTATATGACA
*
106749595 TTTAATATTTTTTAAAT
1 TTTAATATTATTTAAAT
106749612 TTTAAT-TTATTTAAAT
1 TTTAATATTATTTAAAT
*
106749628 ATT-ATATTA
1 TTTAATATTA
106749637 CAGTTTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTAATATTATTTAAAT
Found at i:106751146 original size:27 final size:27
Alignment explanation
Indices: 106751102--106751156 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
106751092 AATATATTGG
*
106751102 ATTTATACTCTTGACTTTGGTTTGTCA
1 ATTTATACTATTGACTTTGGTTTGTCA
* * *
106751129 ATTTGTACTATTGGCTTTTGTTTGTCA
1 ATTTATACTATTGACTTTGGTTTGTCA
106751156 A
1 A
106751157 CTTCTCCCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.18, C:0.13, G:0.16, T:0.53
Consensus pattern (27 bp):
ATTTATACTATTGACTTTGGTTTGTCA
Found at i:106755252 original size:27 final size:27
Alignment explanation
Indices: 106755199--106755253 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
106755189 TGTAACAACC
* *
106755199 AACCTATTTGAGAGATCTGAGTAGTGA
1 AACCCATTTGAGAGATCTGAGCAGTGA
*
106755226 AACCCATTTGAGAGATCTGAGCGGTGA
1 AACCCATTTGAGAGATCTGAGCAGTGA
106755253 A
1 A
106755254 GAAGTTCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (27 bp):
AACCCATTTGAGAGATCTGAGCAGTGA
Done.