Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 345 of 425
Found at i:106756613 original size:2 final size:2
Alignment explanation
Indices: 106756606--106756634 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
106756596 GTTGAGTAAT
106756606 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106756635 TATGATGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106763585 original size:60 final size:60
Alignment explanation
Indices: 106763502--106763635 Score: 182
Period size: 60 Copynumber: 2.2 Consensus size: 60
106763492 CAATTTGATC
* * ** * *
106763502 CTAAATCTAAAAATTCAACAAATTTAGTCC-TCAATGTTTACAAAATTTGTCATTTTAGTT
1 CTAATTCTTAAAATTCAACAAATTTAG-CCTTCAACATTTACAAAATTTGTCAATTTAGTG
*
106763562 CTAATTCTTAAAATTCAATAAATTTAGCCTTCAACATTTACAAAATTTGTCAATTTAGTG
1 CTAATTCTTAAAATTCAACAAATTTAGCCTTCAACATTTACAAAATTTGTCAATTTAGTG
106763622 CTAATTC-TAAAATT
1 CTAATTCTTAAAATT
106763636 TAAAAAAAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
59 9 0.14
60 57 0.86
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.40
Consensus pattern (60 bp):
CTAATTCTTAAAATTCAACAAATTTAGCCTTCAACATTTACAAAATTTGTCAATTTAGTG
Found at i:106763666 original size:17 final size:18
Alignment explanation
Indices: 106763642--106763675 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
106763632 AATTTAAAAA
106763642 AAAGAAAAAT-ATTTTTT
1 AAAGAAAAATCATTTTTT
106763659 AAA-AAAAATCATTTTTT
1 AAAGAAAAATCATTTTTT
106763676 GGATAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
AAAGAAAAATCATTTTTT
Found at i:106768955 original size:2 final size:2
Alignment explanation
Indices: 106768948--106768976 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
106768938 CTAATACATG
106768948 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
106768977 GAAATACACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:106778274 original size:690 final size:690
Alignment explanation
Indices: 106776898--106778275 Score: 2147
Period size: 690 Copynumber: 2.0 Consensus size: 690
106776888 TGCCAAAGAC
* * * *
106776898 AAAAAGTATAGGCATAGCTGTTGTGTTGTAGGCGAGGTCTTTTTGTTAGAAAAGTAATTACACAT
1 AAAAAGTATAGGCATAGCCGTTATGTTGTAGGCGAGGTCTTTTGGTTAGAAAAGAAATTACACAT
* * *
106776963 TTCTTTTTGTAAAAATTGAAAAGGTAAACTGTATCACAAAGATAACTTGCGAAAGTAAAGTTGAT
66 TTCTTTTTATAAAAATTGAAAAGGTAAACTATATCACAAAGATAACTTGCGAAAATAAAGTTGAT
* * *
106777028 ATTATTCCTAATACACCATTTGTGAATGAAGGCATGTTATATTGAACTTGCGAGACCTTGAAAGT
131 ATTATTCCTAATACACCATTTATGAATAAAGGCATGTTATATTAAACTTGCGAGACCTTGAAAGT
* *
106777093 AAAGTATGAACACACAACGCATAACTTTGAAGATAAAGTGTGAATATAAAAAGTGGTACTAAAAT
196 AAAGTATGAACACACAACGCATAACTTTGAAGATAAAGTATGAATACAAAAAGTGGTACTAAAAT
*
106777158 TTTGTTGAAAGGGTTGAAAAGGTGAAAAGTGAAATTATATGTAAGAAGGTTAAAATCTTGAAATC
261 TTTGTTGAAAGGGTTAAAAAGGTGAAAAGTGAAATTATATGTAAGAAGGTTAAAATCTTGAAATC
106777223 AAAGTGACTAAAAAAGGTGCGCAACTTAAAAAGGTGAAGACCTGAAAACATAAAGAGATCCCTAG
326 AAAGTGACTAAAAAAGGTGCGCAACTTAAAAAGGTGAAGACCTGAAAACATAAAGAGATCCCTAG
* *
106777288 CTCCATGCTTCAAAAAGGATAAATATGTATAAAATTACATGACCTGAAAAGATCAAAAGTTGGGT
391 CTCCATGCTTCAAAAAGGATAAATATGTAGAAAATTACATGACCTGAAAAAATCAAAAGTTGGGT
* * * *
106777353 GGCTTGATGCCTAGAAAAGCTTAATTAAGTGTTGACTAGGCATGTGAATTGTGGCTATATGGGTG
456 GGCTTGATGCCTAGAAAAGCTTAAGTAAGTCTTGACGAGGCATGTGAATTGTGGC-ATATGCGTG
* ** * * *
106777418 TAATAAGACAAATGGGAGAAAATAGTAAAATAAATTTTGATAACCTCATTGCTCGCATCAATGGT
520 CAATAAGACAAATGGGAGAAAATAGTAAAATAAATTTCAATAACCTCAATGCTCACATCAATAGT
* * *
106777483 GGGTCAAGGACTACTAGTGCAATTGGGGAAATATTAGCTATTTCTAGCACATATATAATATATAT
585 GGGTCAAGGACTACTAGTGCAATTGGGAAAATATTAGCTATTGCTAGAACATATATAATATATAT
106777548 AAATTGGAGCATTGTCAACCAATATATAAATATATATAATT
650 AAATTGGAGCATTGTCAACCAATATATAAATATATATAATT
* *
106777589 AAAAGGTATAGGCATAGCCGTTATGTTGTAGGTGAGGTCTTTTGGTTAGAAAA-AAATTACACAT
1 AAAAAGTATAGGCATAGCCGTTATGTTGTAGGCGAGGTCTTTTGGTTAGAAAAGAAATTACACAT
*
106777653 TTCTTTTTATAAAAATTGAAAAGTTAAACTATATCACAAAGATAACTTGCGAAAATAAAGTTGAT
66 TTCTTTTTATAAAAATTGAAAAGGTAAACTATATCACAAAGATAACTTGCGAAAATAAAGTTGAT
* * * *
106777718 ATTATTCTTAATACACCATTTATGAATAAAGGGATGTTGTATTAAACTTGCGAGACCTTGAGAGT
131 ATTATTCCTAATACACCATTTATGAATAAAGGCATGTTATATTAAACTTGCGAGACCTTGAAAGT
* * * *
106777783 AAAGTATGAACACACAATGCATAACTTTGAAGATAAAGTATGAATGCAAAAGGTGGTACTACAAT
196 AAAGTATGAACACACAACGCATAACTTTGAAGATAAAGTATGAATACAAAAAGTGGTACTAAAAT
* * *
106777848 TTTTTTGAAAGGGTTAAAAATGTGAAAAGTGAAATTATATGTAAGAATGTTAAAATCTTGAAATC
261 TTTGTTGAAAGGGTTAAAAAGGTGAAAAGTGAAATTATATGTAAGAAGGTTAAAATCTTGAAATC
* * *
106777913 AAAGTGACTTAAAAATGTGCGCAACTTAAGAAA-GTGAAGACCTGAAAATATAAAGAGATCCCTA
326 AAAGTGACTAAAAAAGGTGCGCAACTTAA-AAAGGTGAAGACCTGAAAACATAAAGAGATCCCTA
* * * * *
106777977 GCTTCATGCTTTAAAAAGGATAAATATGTAGAAAATTACATGACTTGAAAAAATTAAGAGTTGGG
390 GCTCCATGCTTCAAAAAGGATAAATATGTAGAAAATTACATGACCTGAAAAAATCAAAAGTTGGG
* *
106778042 TGGCTTGATGCCTGGAAAAGCTTAAGTAAGTACTT-ACGAGGCATGTGATTTGTGGC-TATGCGT
455 TGGCTTGATGCCTAGAAAAGCTTAAGTAAGT-CTTGACGAGGCATGTGAATTGTGGCATATGCGT
*
106778105 GCCCAATAAGACAAATGGGAGAGAATAGTAAAATAAATTTCAATAACCTCAATGCTCACATCAAT
519 G--CAATAAGACAAATGGGAGAAAATAGTAAAATAAATTTCAATAACCTCAATGCTCACATCAAT
* *
106778170 AGTGGG-CTAGGGACTACTAGTGCAATTGGGAAAATATTAGCTATTGCTAGAACATATATAGTAT
582 AGTGGGTC-AAGGACTACTAGTGCAATTGGGAAAATATTAGCTATTGCTAGAACATATATAATAT
*
106778234 ATATAAATTAGG-GCATTGTCAACCAATATATATATATATATA
646 ATATAAATT-GGAGCATTGTCAACCAATATATAAATATATATA
106778276 TATATAACTT
Statistics
Matches: 625, Mismatches: 56, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
688 7 0.01
689 1 0.00
690 562 0.90
691 55 0.09
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (690 bp):
AAAAAGTATAGGCATAGCCGTTATGTTGTAGGCGAGGTCTTTTGGTTAGAAAAGAAATTACACAT
TTCTTTTTATAAAAATTGAAAAGGTAAACTATATCACAAAGATAACTTGCGAAAATAAAGTTGAT
ATTATTCCTAATACACCATTTATGAATAAAGGCATGTTATATTAAACTTGCGAGACCTTGAAAGT
AAAGTATGAACACACAACGCATAACTTTGAAGATAAAGTATGAATACAAAAAGTGGTACTAAAAT
TTTGTTGAAAGGGTTAAAAAGGTGAAAAGTGAAATTATATGTAAGAAGGTTAAAATCTTGAAATC
AAAGTGACTAAAAAAGGTGCGCAACTTAAAAAGGTGAAGACCTGAAAACATAAAGAGATCCCTAG
CTCCATGCTTCAAAAAGGATAAATATGTAGAAAATTACATGACCTGAAAAAATCAAAAGTTGGGT
GGCTTGATGCCTAGAAAAGCTTAAGTAAGTCTTGACGAGGCATGTGAATTGTGGCATATGCGTGC
AATAAGACAAATGGGAGAAAATAGTAAAATAAATTTCAATAACCTCAATGCTCACATCAATAGTG
GGTCAAGGACTACTAGTGCAATTGGGAAAATATTAGCTATTGCTAGAACATATATAATATATATA
AATTGGAGCATTGTCAACCAATATATAAATATATATAATT
Found at i:106781251 original size:27 final size:25
Alignment explanation
Indices: 106781208--106781277 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 25
106781198 GGAGGAAGTG
**
106781208 TACTGTACTGGTGGCTTAGCCACATA
1 TACTGTACTGGCAGCTTAGCCACA-A
* **
106781234 TACTGATACTGGCAGCTTTGCTGCAA
1 TACTG-TACTGGCAGCTTAGCCACAA
106781260 TACTGCTACTGGCAGCTT
1 TACTG-TACTGGCAGCTT
106781278 TGCTGCGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
26 23 0.62
27 14 0.38
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.31
Consensus pattern (25 bp):
TACTGTACTGGCAGCTTAGCCACAA
Found at i:106781262 original size:26 final size:26
Alignment explanation
Indices: 106781233--106781283 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
106781223 TTAGCCACAT
106781233 ATACTGATACTGGCAGCTTTGCTGCA
1 ATACTGATACTGGCAGCTTTGCTGCA
*
106781259 ATACTGCTACTGGCAGCTTTGCTGC
1 ATACTGATACTGGCAGCTTTGCTGC
106781284 GATATTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (26 bp):
ATACTGATACTGGCAGCTTTGCTGCA
Found at i:106781368 original size:22 final size:22
Alignment explanation
Indices: 106781325--106781368 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
106781315 TTGTCCCCAC
* *
106781325 ATGGTGTGTTGGTTGGTATGGG
1 ATGGTGTGTTGGCTAGTATGGG
*
106781347 ATGGTGTGTTGGCTAGTTTGGG
1 ATGGTGTGTTGGCTAGTATGGG
106781369 TTGAGTTGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.02, G:0.48, T:0.41
Consensus pattern (22 bp):
ATGGTGTGTTGGCTAGTATGGG
Found at i:106782333 original size:22 final size:23
Alignment explanation
Indices: 106782303--106782346 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
106782293 ACAGATACGC
*
106782303 GAATTTCC-ACCCAAACACACCA
1 GAATATCCAACCCAAACACACCA
106782325 GAATATCCAACCCAAACACACC
1 GAATATCCAACCCAAACACACC
106782347 CGGAATATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.43, C:0.41, G:0.05, T:0.11
Consensus pattern (23 bp):
GAATATCCAACCCAAACACACCA
Found at i:106783470 original size:12 final size:12
Alignment explanation
Indices: 106783455--106783485 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
106783445 TTCTCTTTTA
*
106783455 TTTTTCTTTCCC
1 TTTTTCTTTCAC
106783467 TTTTTCTTTCAC
1 TTTTTCTTTCAC
106783479 TTTTTCT
1 TTTTTCT
106783486 CCCTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTTCTTTCAC
Found at i:106792185 original size:2 final size:2
Alignment explanation
Indices: 106792180--106792209 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
106792170 CACTTGGTCC
106792180 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106792210 TAATTACCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:106793257 original size:21 final size:20
Alignment explanation
Indices: 106793217--106793268 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
106793207 GTTGAATGAG
106793217 TTTAATAATTTTTTAAAAAT
1 TTTAATAATTTTTTAAAAAT
*
106793237 TTTAA-AATTTTTTTATGAAAT
1 TTTAATAA-TTTTTTA-AAAAT
106793258 TTTAATTAATT
1 TTTAA-TAATT
106793269 AATTAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 2 0.07
20 12 0.44
21 9 0.33
22 2 0.07
23 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTAATAATTTTTTAAAAAT
Found at i:106793796 original size:31 final size:30
Alignment explanation
Indices: 106793761--106793826 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
106793751 TAACCAAAAG
*
106793761 TTAGTAGGACAAAAAATTTAATATCAAATAT
1 TTAGT-GGACAAAAAATTGAATATCAAATAT
** * *
106793792 TTAGTTTATAAAAAATTGAATATCAAATCT
1 TTAGTGGACAAAAAATTGAATATCAAATAT
106793822 TTAGT
1 TTAGT
106793827 TTTAACCACA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (30 bp):
TTAGTGGACAAAAAATTGAATATCAAATAT
Found at i:106793805 original size:30 final size:30
Alignment explanation
Indices: 106793771--106793828 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
106793761 TTAGTAGGAC
*
106793771 AAAAAATTTAATATCAAATATTTAGTTTAT
1 AAAAAATTGAATATCAAATATTTAGTTTAT
*
106793801 AAAAAATTGAATATCAAATCTTTAGTTT
1 AAAAAATTGAATATCAAATATTTAGTTT
106793829 TAACCACAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.41
Consensus pattern (30 bp):
AAAAAATTGAATATCAAATATTTAGTTTAT
Found at i:106793850 original size:57 final size:57
Alignment explanation
Indices: 106793788--106793908 Score: 215
Period size: 57 Copynumber: 2.1 Consensus size: 57
106793778 TTAATATCAA
106793788 ATATTTAGTTTATAAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
1 ATATTTAGTTTATAAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
* * *
106793845 GTATTTAGTTTCTGAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
1 ATATTTAGTTTATAAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
106793902 ATATTTA
1 ATATTTA
106793909 ATCAAGACAA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.45
Consensus pattern (57 bp):
ATATTTAGTTTATAAAAAATTGAATATCAAATCTTTAGTTTTAACCACAATTCTATT
Found at i:106809122 original size:19 final size:19
Alignment explanation
Indices: 106809076--106809123 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
106809066 TCTAGGTTCG
106809076 ATTTGAAACAAAATAGAAAA
1 ATTTGAAA-AAAATAGAAAA
* * *
106809096 ATTAGAAAAAAGTTGAAAA
1 ATTTGAAAAAAATAGAAAA
*
106809115 TTTTGAAAA
1 ATTTGAAAA
106809124 TAGGGGACAC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.60, C:0.02, G:0.12, T:0.25
Consensus pattern (19 bp):
ATTTGAAAAAAATAGAAAA
Found at i:106809433 original size:121 final size:121
Alignment explanation
Indices: 106809203--106809425 Score: 324
Period size: 121 Copynumber: 1.8 Consensus size: 121
106809193 TCCCAGTTCA
* * * *
106809203 TGTGTCCGCCCGTGTGTGCATTCAATGTTGGGTCACATGACCATGTCACAGGTCGTGTCACAAAC
1 TGTGTCCGCCCGTATGTGCATTCAATGTTGGGTCACACGACCATGTCACAAGCCGTGTCACAAAC
106809268 CATGTAACTAATCGTTTTAAGATACACAGTCGTGTCGCAAGCTGTTTCCCAACCTG
66 CATGTAACTAATCGTTTTAAGATACACAGTCGTGTCGCAAGCTGTTTCCCAACCTG
* * * * * *
106809324 TGTGTCCGCCCTTATGTGCATTTAATGTTGGGTCACACGGCCATGTCGCAAGCCGTGTCTCAGAC
1 TGTGTCCGCCCGTATGTGCATTCAATGTTGGGTCACACGACCATGTCACAAGCCGTGTCACAAAC
106809389 CATGTAACTAA-CTGTTTTAAGATACAC-GATCGTGTCG
66 CATGTAACTAATC-GTTTTAAGATACACAG-TCGTGTCG
106809426 TAGGCTGTGT
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
120 2 0.02
121 88 0.98
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (121 bp):
TGTGTCCGCCCGTATGTGCATTCAATGTTGGGTCACACGACCATGTCACAAGCCGTGTCACAAAC
CATGTAACTAATCGTTTTAAGATACACAGTCGTGTCGCAAGCTGTTTCCCAACCTG
Found at i:106811074 original size:24 final size:24
Alignment explanation
Indices: 106811046--106811095 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
106811036 AATCTTATGT
106811046 TAGCAAGAAAGTTTAGTTTAAAAC
1 TAGCAAGAAAGTTTAGTTTAAAAC
106811070 TAGCAAGAAAGTTTAGTTTAAAAC
1 TAGCAAGAAAGTTTAGTTTAAAAC
106811094 TA
1 TA
106811096 CTTCTTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (24 bp):
TAGCAAGAAAGTTTAGTTTAAAAC
Found at i:106811871 original size:12 final size:12
Alignment explanation
Indices: 106811844--106811888 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
106811834 TATTTCCCAC
*
106811844 AAAAAAAGTGATA
1 AAAAAAAGT-ACA
106811857 AAAAAAAGTACA
1 AAAAAAAGTACA
*
106811869 AAAAAAAATACGA
1 AAAAAAAGTAC-A
106811882 AAAAAAA
1 AAAAAAA
106811889 TAAAAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 12 0.41
13 17 0.59
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (12 bp):
AAAAAAAGTACA
Found at i:106811889 original size:12 final size:12
Alignment explanation
Indices: 106811856--106811900 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
106811846 AAAAAGTGAT
*
106811856 AAAAAAAAGTAC
1 AAAAAAAAATAC
106811868 AAAAAAAAATAC
1 AAAAAAAAATAC
*
106811880 GAAAAAAAATA-
1 AAAAAAAAATAC
106811891 AAAAATAAAA
1 AAAAA-AAAA
106811901 AAATTTATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 4 0.14
12 25 0.86
ACGTcount: A:0.82, C:0.04, G:0.04, T:0.09
Consensus pattern (12 bp):
AAAAAAAAATAC
Found at i:106813824 original size:15 final size:15
Alignment explanation
Indices: 106813804--106813849 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
106813794 AAATGAGGAG
*
106813804 TGGTTATGTTTTACC
1 TGGTTATGTTTTAAC
106813819 TGGTTATGTTTTAAC
1 TGGTTATGTTTTAAC
106813834 TGGTTATGTTTTAAC
1 TGGTTATGTTTTAAC
106813849 T
1 T
106813850 AACTCTAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.17, C:0.09, G:0.20, T:0.54
Consensus pattern (15 bp):
TGGTTATGTTTTAAC
Found at i:106814059 original size:24 final size:24
Alignment explanation
Indices: 106814029--106814078 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
106814019 AAACAAGAAG
106814029 TAGTTTTAAACTAAACTTTCTTGC
1 TAGTTTTAAACTAAACTTTCTTGC
106814053 TAGTTTTAAACTAAACTTTCTTGC
1 TAGTTTTAAACTAAACTTTCTTGC
106814077 TA
1 TA
106814079 ACATAAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (24 bp):
TAGTTTTAAACTAAACTTTCTTGC
Found at i:106814827 original size:75 final size:75
Alignment explanation
Indices: 106814701--106814868 Score: 198
Period size: 75 Copynumber: 2.3 Consensus size: 75
106814691 CGCCTAACGG
* * * *
106814701 TAGTCGGGTAAACCAACAAATATAATGGTGTGCCCAGCACTAGTAAGATAAATTAAAAAAGGTTG
1 TAGTCGGATAAACCAACAAATATAATGGTGTGCCCAACACTAGTAAGATAAATCAAAAAAGATTG
*
106814766 CACCTAGCGC
66 CACCCAGCGC
* * * * *
106814776 TAG-CTGGATAAACCGACAAGTATAATGTTGTGCCCAACACTAGT-CGAATAAATCAACAAAGAT
1 TAGTC-GGATAAACCAACAAATATAATGGTGTGCCCAACACTAGTAAG-ATAAATCAAAAAAGAT
*
106814839 TGCGCCCAGCGC
64 TGCACCCAGCGC
106814851 TAGTCGGAT-AACCAACAA
1 TAGTCGGATAAACCAACAA
106814869 TAGTTGTGCC
Statistics
Matches: 78, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
74 10 0.13
75 67 0.86
76 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.20
Consensus pattern (75 bp):
TAGTCGGATAAACCAACAAATATAATGGTGTGCCCAACACTAGTAAGATAAATCAAAAAAGATTG
CACCCAGCGC
Found at i:106814888 original size:34 final size:34
Alignment explanation
Indices: 106814802--106814888 Score: 95
Period size: 34 Copynumber: 2.5 Consensus size: 34
106814792 CAAGTATAAT
* *
106814802 GTTGTGCCCAACACTAGTCGAATAAATCAACAAA
1 GTTGTGCCCAGCACTAGTCGAATAAACCAACAAA
* * *
106814836 GATTGCGCCCAGCGCTAGTCGGAT-AACCAACAATA
1 G-TTGTGCCCAGCACTAGTCGAATAAACCAACAA-A
*
106814871 GTTGTGCCCTGCACTAGT
1 GTTGTGCCCAGCACTAGT
106814889 TGGGTGTACC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
34 23 0.53
35 20 0.47
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (34 bp):
GTTGTGCCCAGCACTAGTCGAATAAACCAACAAA
Found at i:106822692 original size:19 final size:20
Alignment explanation
Indices: 106822651--106822692 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
106822641 TATTTTCTTT
* * *
106822651 TTACGCATATTATTATTTTA
1 TTACGCATATCATTATATCA
106822671 TTAC-CATATCATTATATCA
1 TTACGCATATCATTATATCA
106822690 TTA
1 TTA
106822693 ATTTAATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.33, C:0.14, G:0.02, T:0.50
Consensus pattern (20 bp):
TTACGCATATCATTATATCA
Found at i:106822774 original size:15 final size:14
Alignment explanation
Indices: 106822750--106822926 Score: 56
Period size: 15 Copynumber: 12.5 Consensus size: 14
106822740 ACTCAAATAC
106822750 TATTATTTATCTAT
1 TATTATTTATCTAT
106822764 TATTGATTTATCTAT
1 TATT-ATTTATCTAT
106822779 T-TATATTTCTATC-AT
1 TAT-TA-TT-TATCTAT
106822794 TATTATATT-TCTAT
1 TATTAT-TTATCTAT
* * *
106822808 GTATTGTATCTCTAT
1 -TATTATTTATCTAT
106822823 T-TATATTTATATACTAAT
1 TAT-TA-TT-TAT-CT-AT
106822841 ATCATT-TTTAT-TAT
1 -T-ATTATTTATCTAT
*
106822855 TATT-TTTATATAT
1 TATTATTTATCTAT
106822868 TATTA-TTAT-TAT
1 TATTATTTATCTAT
* *
106822880 CATTA-TTATC-AC
1 TATTATTTATCTAT
*
106822892 TATTAGTACTAT-TAT
1 TATTA-T-TTATCTAT
*
106822907 TATTTTTTATC-AT
1 TATTATTTATCTAT
106822920 TATTATT
1 TATTATT
106822927 ATTACTTTTT
Statistics
Matches: 125, Mismatches: 13, Indels: 51
0.66 0.07 0.27
Matches are distributed among these distances:
12 24 0.19
13 26 0.21
14 16 0.13
15 40 0.32
16 7 0.06
17 5 0.04
18 4 0.03
19 1 0.01
20 1 0.01
21 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.60
Consensus pattern (14 bp):
TATTATTTATCTAT
Found at i:106822807 original size:44 final size:43
Alignment explanation
Indices: 106822750--106822888 Score: 115
Period size: 44 Copynumber: 3.1 Consensus size: 43
106822740 ACTCAAATAC
106822750 TATTAT-TTATCTATTATTGATTTATCTATTTATATTTCTATCAT
1 TATTATATT-TCTATTATTGATTTATCTATTTATATTT-TATCAT
* * *
106822794 TATTATATTTCTATGTATTG-TATCTCTATTTATATTTATAT-AC
1 TATTATATTTCTAT-TATTGATTTATCTATTTATATTT-TATCAT
* * * *
106822837 TAATATCATTTTTATTATT-ATTTTTATATATTATTATTATTATCAT
1 TATTAT-ATTTCTATTATTGATTTATCTAT-TTA-TATT-TTATCAT
106822883 TATTAT
1 TATTAT
106822889 CACTATTAGT
Statistics
Matches: 76, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
43 16 0.21
44 39 0.51
45 14 0.18
46 7 0.09
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (43 bp):
TATTATATTTCTATTATTGATTTATCTATTTATATTTTATCAT
Found at i:106822856 original size:3 final size:3
Alignment explanation
Indices: 106822848--106823035 Score: 97
Period size: 3 Copynumber: 64.3 Consensus size: 3
106822838 AATATCATTT
* * * *
106822848 TTA TTA TTA TTT TTA TATA TTA TTA TTA TTA TCA TTA TTA TCA CTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
106822894 TTA GTA CTA TTA TTA TT- TT- TTA TCA TTA TTA TTA TTA CTT- TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* * * * * * * *
106822936 TTC CTA CTA TTA TTA TT- TCGTA CTA TTA TTG TTA TTA TTA CTG CTA
1 TTA TTA TTA TTA TTA TTA T--TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
106822982 TTA TT- TT- TTA CTA TT- TT- TTA CTA TTA TTA TTG TTG CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
106823026 TTA TTA TTA T
1 TTA TTA TTA T
106823036 CTTTTTAATT
Statistics
Matches: 144, Mismatches: 32, Indels: 18
0.74 0.16 0.09
Matches are distributed among these distances:
2 17 0.12
3 121 0.84
4 6 0.04
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:106822959 original size:16 final size:16
Alignment explanation
Indices: 106822935--106822965 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
106822925 TTATTACTTT
106822935 TTTCCTACTATTATTA
1 TTTCCTACTATTATTA
*
106822951 TTTCGTACTATTATT
1 TTTCCTACTATTATT
106822966 GTTATTATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.03, T:0.58
Consensus pattern (16 bp):
TTTCCTACTATTATTA
Found at i:106823012 original size:16 final size:16
Alignment explanation
Indices: 106822940--106822996 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
106822930 ACTTTTTTCC
**
106822940 TACTATTATTATTTCG
1 TACTATTATTATTTTT
*
106822956 TACTATTATTGTTATTAT
1 TACTATTATTATT-TT-T
**
106822974 TACTGCTATTATTTTT
1 TACTATTATTATTTTT
106822990 TACTATT
1 TACTATT
106822997 TTTTACTATT
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
16 18 0.58
17 3 0.10
18 10 0.32
ACGTcount: A:0.25, C:0.11, G:0.05, T:0.60
Consensus pattern (16 bp):
TACTATTATTATTTTT
Found at i:106823019 original size:38 final size:41
Alignment explanation
Indices: 106822967--106823042 Score: 104
Period size: 38 Copynumber: 1.9 Consensus size: 41
106822957 ACTATTATTG
106822967 TTATTATTACTGCTATTATT-TT-TTACTAT-TTTTTACTA
1 TTATTATTACTGCTATTATTATTATTACTATCTTTTTACTA
** *
106823005 TTATTATTGTTGCTATTATTATTATTATTATCTTTTTA
1 TTATTATTACTGCTATTATTATTATTACTATCTTTTTA
106823043 ATTTGTGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 18 0.56
39 2 0.06
40 6 0.19
41 6 0.19
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.64
Consensus pattern (41 bp):
TTATTATTACTGCTATTATTATTATTACTATCTTTTTACTA
Found at i:106832417 original size:93 final size:93
Alignment explanation
Indices: 106832305--106832474 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
106832295 GCCCATAAGT
* ** *
106832305 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
106832370 TGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
106832398 GAACTCGGACTCAACTCAACAAGTTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
106832463 CGAGTTCGGATG
66 CGAGCTCGGATG
106832475 TTCAACCATC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCAAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:106832469 original size:46 final size:46
Alignment explanation
Indices: 106832297--106832466 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
106832287 TGTAACCCGC
* *
106832297 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCAT
* * *
106832343 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--A-GAC-A-TTCGCAT
* * * * *
106832393 -C-TCA-CGAACTCGGACTCAACTCAACAAGTTCAAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCAT
106832436 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
106832467 TTCGGATGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 55 0.55
47 23 0.23
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCAT
Found at i:106837395 original size:9 final size:8
Alignment explanation
Indices: 106837380--106837404 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
106837370 TGAGACCTTC
106837380 TAAAAAAA
1 TAAAAAAA
106837388 TAAAAAAA
1 TAAAAAAA
106837396 TAAAAAAA
1 TAAAAAAA
106837404 T
1 T
106837405 GGAGAAGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:106838345 original size:45 final size:45
Alignment explanation
Indices: 106838251--106838408 Score: 175
Period size: 45 Copynumber: 3.6 Consensus size: 45
106838241 TACAAACCTC
* * *
106838251 ATCTCACTGAAGTTGTAGTAGAGCAG--GAA-G-TTACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGGATTACAAGTCTT
*
106838292 ATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGGATTACAAGTGTT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGGATTACAAGTCTT
* * * *
106838337 ATCTCCCTGAAATTGCAGTGGAGCAGACT--GAATATAGCAAATCTT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGGAT-TA-CAAGTCTT
*
106838382 ATCTCCCTGAAGTTGCAGTGGAGCAGA
1 ATCTCCCTGAAGTTGCAGTAGAGCAGA
106838409 TTGAAGCTAC
Statistics
Matches: 101, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
41 24 0.24
43 5 0.05
44 3 0.03
45 69 0.68
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGGATTACAAGTCTT
Found at i:106838463 original size:96 final size:95
Alignment explanation
Indices: 106838335--106838517 Score: 276
Period size: 96 Copynumber: 1.9 Consensus size: 95
106838325 ATTACAAGTG
** * *
106838335 TTATCTCCCTGAAATTGCAGTGGAGCAGACTGAATATAGCAAATCTTATCTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAATTGCAGCAGAGCAGACTGAAGAAAGCAAATCTTAT-TCCCTGAAGTTGCAG
* *
106838400 TGGAGCAGATTGAAGCTACAAATCACAAACC
65 TGGAACAGATTAAAGCTACAAATCACAAACC
* * *
106838431 TTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGAAAGCGAATCTTATTCCCTGACGTTGCAGT
1 TTATCTCCCTGAAATTGCAGCAGAGCAGACTGAAGAAAGCAAATCTTATTCCCTGAAGTTGCAGT
106838496 GGAACAGATTAAAGCTACAAAT
66 GGAACAGATTAAAGCTACAAAT
106838518 TATGGAGAAT
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
95 35 0.45
96 43 0.55
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (95 bp):
TTATCTCCCTGAAATTGCAGCAGAGCAGACTGAAGAAAGCAAATCTTATTCCCTGAAGTTGCAGT
GGAACAGATTAAAGCTACAAATCACAAACC
Found at i:106840297 original size:15 final size:15
Alignment explanation
Indices: 106840277--106840305 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
106840267 TCAAATACTA
106840277 TTATTTATCTATTTT
1 TTATTTATCTATTTT
106840292 TTATTTATCTATTT
1 TTATTTATCTATTT
106840306 ATATTTCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (15 bp):
TTATTTATCTATTTT
Found at i:106840381 original size:3 final size:3
Alignment explanation
Indices: 106840375--106840579 Score: 182
Period size: 3 Copynumber: 68.3 Consensus size: 3
106840365 TATCATTTTT
* * * * * * *
106840375 TTA TTA TTA TCA TTA TTA TCA CTA TTA GTA CTA TTA TTA TTT TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
106840423 TTA TTA TTA TTA TTA CTT- TT- TTC CTA CTA TTT TTA TT- TCGTA CTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T--TA TTA
* * * * * * *
106840468 TTA TTG TTA TTA TTA CTA CTA CTA CTA CTA CTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
106840516 TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
106840564 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
106840580 CTTTTTAACT
Statistics
Matches: 171, Mismatches: 26, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
2 5 0.03
3 163 0.95
4 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:106860550 original size:17 final size:17
Alignment explanation
Indices: 106860528--106860561 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
106860518 ATAGCATAAA
106860528 TGACAGAAGGATTTAGC
1 TGACAGAAGGATTTAGC
106860545 TGACAGAAGGATTTAGC
1 TGACAGAAGGATTTAGC
106860562 GGAGCTGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (17 bp):
TGACAGAAGGATTTAGC
Found at i:106867671 original size:9 final size:8
Alignment explanation
Indices: 106867657--106867706 Score: 68
Period size: 7 Copynumber: 6.2 Consensus size: 8
106867647 TTGCTTTTTG
106867657 TTTTTAGTT
1 TTTTTA-TT
106867666 TTTTTA-T
1 TTTTTATT
106867673 TTTTTATTT
1 TTTTTA-TT
106867682 TTTTTATT
1 TTTTTATT
106867690 TTTTTA-T
1 TTTTTATT
106867697 TTTTTATT
1 TTTTTATT
106867705 TT
1 TT
106867707 GCTTTGTGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
7 14 0.37
8 11 0.29
9 13 0.34
ACGTcount: A:0.12, C:0.00, G:0.02, T:0.86
Consensus pattern (8 bp):
TTTTTATT
Found at i:106867676 original size:16 final size:15
Alignment explanation
Indices: 106867665--106867706 Score: 66
Period size: 16 Copynumber: 2.7 Consensus size: 15
106867655 TGTTTTTAGT
*
106867665 TTTTTTATTTTTTATT
1 TTTTTTATTTTTT-TA
106867681 TTTTTTATTTTTTTA
1 TTTTTTATTTTTTTA
106867696 TTTTTTATTTT
1 TTTTTTATTTT
106867707 GCTTTGTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTTATTTTTTTA
Found at i:106867684 original size:17 final size:17
Alignment explanation
Indices: 106867657--106867701 Score: 74
Period size: 16 Copynumber: 2.7 Consensus size: 17
106867647 TTGCTTTTTG
*
106867657 TTTTTAGTTTTTTTA-T
1 TTTTTATTTTTTTTATT
106867673 TTTTTATTTTTTTTATT
1 TTTTTATTTTTTTTATT
106867690 TTTTTATTTTTT
1 TTTTTATTTTTT
106867702 ATTTTGCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 14 0.52
17 13 0.48
ACGTcount: A:0.11, C:0.00, G:0.02, T:0.87
Consensus pattern (17 bp):
TTTTTATTTTTTTTATT
Found at i:106867691 original size:24 final size:25
Alignment explanation
Indices: 106867657--106867706 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
106867647 TTGCTTTTTG
106867657 TTTTTAGTTTTTTTATTTTTTATTT
1 TTTTTAGTTTTTTTATTTTTTATTT
106867682 TTTTTA-TTTTTTTATTTTTTATTT
1 TTTTTAGTTTTTTTATTTTTTATTT
106867706 T
1 T
106867707 GCTTTGTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.12, C:0.00, G:0.02, T:0.86
Consensus pattern (25 bp):
TTTTTAGTTTTTTTATTTTTTATTT
Found at i:106869326 original size:19 final size:18
Alignment explanation
Indices: 106869302--106869352 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
106869292 AAAAAATTAT
*
106869302 ACATTTTTATTTTTTTAA
1 ACATTTTTATTTTTTCAA
*
106869320 ACAATTTTTATACTTTTCAA
1 AC-ATTTTTAT-TTTTTCAA
*
106869340 ACCTTTTTATTTT
1 ACATTTTTATTTT
106869353 AAAAAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 4 0.15
19 15 0.56
20 8 0.30
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.61
Consensus pattern (18 bp):
ACATTTTTATTTTTTCAA
Found at i:106872754 original size:3 final size:3
Alignment explanation
Indices: 106872746--106872786 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
106872736 TAATGAAACA
106872746 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
106872787 AAGGAAGGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:106873344 original size:20 final size:21
Alignment explanation
Indices: 106873319--106873362 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
106873309 TCATTGTTTA
106873319 ATTAAA-TT-TATTTTATATCT
1 ATTAAATTTATATTTTATAT-T
106873339 ATTAAATTTATATTTTATATT
1 ATTAAATTTATATTTTATATT
106873360 ATT
1 ATT
106873363 TTTACATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.27
21 6 0.27
22 10 0.45
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTAAATTTATATTTTATATT
Found at i:106873647 original size:19 final size:19
Alignment explanation
Indices: 106873620--106873660 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
106873610 TGTCCAAGTG
*
106873620 CATATTTAGTACTACACCA
1 CATAATTAGTACTACACCA
*
106873639 CATAATTAGTACTACATCA
1 CATAATTAGTACTACACCA
106873658 CAT
1 CAT
106873661 TAATACATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (19 bp):
CATAATTAGTACTACACCA
Found at i:106877091 original size:42 final size:42
Alignment explanation
Indices: 106877040--106877158 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
106877030 ATTTAACTAA
* * *
106877040 TATGAGTTTCTGTTCAACTCTTTTGAGGTTCTGTTTAACCCT
1 TATGAGTTTCTGTTCAACTCTTATGAGCTTCTGTTCAACCCT
* * * *
106877082 TATGGGTTTCTGTTTAGCTCTTATGAGCTTCTGTTCAACCTT
1 TATGAGTTTCTGTTCAACTCTTATGAGCTTCTGTTCAACCCT
* * * * *
106877124 TATGTGTTTCTATTTAGCTCTCATGAGCTTCTGTT
1 TATGAGTTTCTGTTCAACTCTTATGAGCTTCTGTT
106877159 TAGCCTTCGG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.15, C:0.18, G:0.18, T:0.49
Consensus pattern (42 bp):
TATGAGTTTCTGTTCAACTCTTATGAGCTTCTGTTCAACCCT
Found at i:106877156 original size:63 final size:63
Alignment explanation
Indices: 106877010--106877162 Score: 164
Period size: 63 Copynumber: 2.4 Consensus size: 63
106877000 TTACTTTCCG
* * * * *
106877010 TTTAGCTCTCACGAGCTTCTATTTAACTAATATGAGTTTCTGTTCAACTCTTTTGAGGTTCTG
1 TTTAGCTCTCATGAGCTTCTGTTTAGCTAATATGAGCTTCTGTTCAACTCTTTTGAGGTTCTA
* * * * * ** * *
106877073 TTTAACCCTTATGGGTTTCTGTTTAGCTCTTATGAGCTTCTGTTCAAC-CTTTATGTGTTTCTA
1 TTTAGCTCTCATGAGCTTCTGTTTAGCTAATATGAGCTTCTGTTCAACTCTTT-TGAGGTTCTA
106877136 TTTAGCTCTCATGAGCTTCTGTTTAGC
1 TTTAGCTCTCATGAGCTTCTGTTTAGC
106877163 CTTCGGGTTT
Statistics
Matches: 70, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
62 4 0.06
63 66 0.94
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (63 bp):
TTTAGCTCTCATGAGCTTCTGTTTAGCTAATATGAGCTTCTGTTCAACTCTTTTGAGGTTCTA
Found at i:106877162 original size:21 final size:21
Alignment explanation
Indices: 106877022--106877160 Score: 109
Period size: 21 Copynumber: 6.6 Consensus size: 21
106877012 TAGCTCTCAC
* **
106877022 GAGCTTCTATTTAACTAATAT
1 GAGCTTCTGTTTAACTCTTAT
* * *
106877043 GAGTTTCTGTTCAACTCTTTT
1 GAGCTTCTGTTTAACTCTTAT
* *
106877064 GAGGTTCTGTTTAACCCTTAT
1 GAGCTTCTGTTTAACTCTTAT
* * *
106877085 GGGTTTCTGTTTAGCTCTTAT
1 GAGCTTCTGTTTAACTCTTAT
*
106877106 GAGCTTCTGTTCAAC-CTTTAT
1 GAGCTTCTGTTTAACTC-TTAT
* * * * *
106877127 GTGTTTCTATTTAGCTCTCAT
1 GAGCTTCTGTTTAACTCTTAT
106877148 GAGCTTCTGTTTA
1 GAGCTTCTGTTTA
106877161 GCCTTCGGGT
Statistics
Matches: 89, Mismatches: 27, Indels: 4
0.74 0.22 0.03
Matches are distributed among these distances:
20 1 0.01
21 87 0.98
22 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.47
Consensus pattern (21 bp):
GAGCTTCTGTTTAACTCTTAT
Found at i:106881558 original size:14 final size:14
Alignment explanation
Indices: 106881539--106881582 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
106881529 AAAGTTAATA
106881539 AATATTATTTATTT
1 AATATTATTTATTT
*
106881553 AATATTA-GTA---
1 AATATTATTTATTT
106881563 AATATTATTTATTT
1 AATATTATTTATTT
106881577 AATATT
1 AATATT
106881583 TACGATTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
10 7 0.29
11 2 0.08
13 2 0.08
14 13 0.54
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (14 bp):
AATATTATTTATTT
Found at i:106881564 original size:24 final size:24
Alignment explanation
Indices: 106881537--106881582 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
106881527 AGAAAGTTAA
106881537 TAAATATTATTTATTTAATATTAG
1 TAAATATTATTTATTTAATATTAG
106881561 TAAATATTATTTATTTAATATT
1 TAAATATTATTTATTTAATATT
106881583 TACGATTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
TAAATATTATTTATTTAATATTAG
Found at i:106891796 original size:26 final size:26
Alignment explanation
Indices: 106891767--106891819 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
106891757 CAATTTAGTC
106891767 ATTAAATGTTAGTTTTGATAAGATGT
1 ATTAAATGTTAGTTTTGATAAGATGT
*
106891793 ATTAAATGTTAGTTTTGATAATATGT
1 ATTAAATGTTAGTTTTGATAAGATGT
106891819 A
1 A
106891820 AATCATACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (26 bp):
ATTAAATGTTAGTTTTGATAAGATGT
Found at i:106892214 original size:16 final size:16
Alignment explanation
Indices: 106892193--106892230 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
106892183 ATGTAGGAGC
*
106892193 ACCTTTAGAAACAATT
1 ACCTTTAGAAACAACT
106892209 ACCTTTAGAAACAACT
1 ACCTTTAGAAACAACT
106892225 ACCTTT
1 ACCTTT
106892231 TGGGAACTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (16 bp):
ACCTTTAGAAACAACT
Found at i:106893172 original size:18 final size:17
Alignment explanation
Indices: 106893138--106893181 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
106893128 TTTATTTAGG
106893138 AATATTTTTGTTCCAAA
1 AATATTTTTGTTCCAAA
106893155 AATACTTTTTG-TCTCAAA
1 AATA-TTTTTGTTC-CAAA
*
106893173 AAGATTTTT
1 AATATTTTT
106893182 TAGAAGGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (17 bp):
AATATTTTTGTTCCAAA
Found at i:106907451 original size:5 final size:5
Alignment explanation
Indices: 106907441--106907466 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
106907431 GAACAAATAT
106907441 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
106907467 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:106907566 original size:5 final size:5
Alignment explanation
Indices: 106907556--106907586 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
106907546 CTCGAAAATT
*
106907556 TTCGA TTCGA TTCAA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
106907587 CGAATGCTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:106916964 original size:58 final size:58
Alignment explanation
Indices: 106916834--106916972 Score: 174
Period size: 58 Copynumber: 2.4 Consensus size: 58
106916824 TATTGTTATT
* *
106916834 AAATTTTAATA-AGATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACC
1 AAATTTTAACATA-ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACA
* * * *
106916892 ATATTTTAACATAATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAATA
1 AAATTTTAACATAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACA
**
106916949 AAATTCTTAGTATAATTATTATTA
1 AAATT-TTAACATAATTATTATTA
106916973 TATGAATTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
57 22 0.31
58 47 0.67
59 1 0.01
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (58 bp):
AAATTTTAACATAATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACA
Found at i:106920098 original size:14 final size:15
Alignment explanation
Indices: 106920071--106920099 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
106920061 AATTTTATGA
106920071 ATTTCATGATGTATT
1 ATTTCATGATGTATT
106920086 ATTTCAT-ATGTATT
1 ATTTCATGATGTATT
106920100 GATGATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (15 bp):
ATTTCATGATGTATT
Found at i:106920292 original size:50 final size:50
Alignment explanation
Indices: 106920217--106920393 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
106920207 CCATGGCAAC
* *
106920217 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAGGGACAAATGA
* *
106920267 AAGTGATAAGT-AGTAGCTTAGGCTACACTTATCTGATCAGGGACAAGTGA
1 AAGTGATAAGTGA-TAGCTTCGGCTACACTTATCTGATCAGGGACAAATGA
*
106920317 AAGTGATAAGTGATAGCTTCGGCTACACCTATCTGATCAGGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAGGGACAAATGA
* * *
106920367 CAAGTGACAAGTGGTAGCTTCTGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
106920394 CTGATCAGTG
Statistics
Matches: 114, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
49 1 0.01
50 89 0.78
51 24 0.21
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAGGGACAAATGA
Found at i:106920410 original size:31 final size:31
Alignment explanation
Indices: 106920369--106920579 Score: 323
Period size: 31 Copynumber: 6.8 Consensus size: 31
106920359 ACAAATGACA
*
106920369 AGTGACAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
*
106920400 AGTGAAAAGTGGTGGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
* *
106920431 AGTGAAAAGTGGTGGCTTCTGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
106920462 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
* *
106920493 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
* * *
106920524 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
* *
106920555 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCTGCTAC
106920580 AAGTGACAAG
Statistics
Matches: 169, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 169 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
Found at i:106920756 original size:42 final size:43
Alignment explanation
Indices: 106920693--106920805 Score: 151
Period size: 42 Copynumber: 2.7 Consensus size: 43
106920683 TGTGATTCGC
* *
106920693 GTAAGACCATAACTAGG-CTATGGCATCGA-TATATGAATATGT
1 GTAAGACCATAGCT-GGACTATGGCATCGATTATATGAAGATGT
*
106920735 GTAAGACCATAGCTGGACTATGGCATC-ATTATGTGAAGATGT
1 GTAAGACCATAGCTGGACTATGGCATCGATTATATGAAGATGT
* *
106920777 GTAAGACCATAGTTGAACTATGGCATCGA
1 GTAAGACCATAGCTGGACTATGGCATCGA
106920806 GAAAACGAAG
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
41 3 0.05
42 59 0.94
43 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (43 bp):
GTAAGACCATAGCTGGACTATGGCATCGATTATATGAAGATGT
Found at i:106921802 original size:43 final size:43
Alignment explanation
Indices: 106921753--106921841 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
106921743 TCCCAAAAAA
106921753 TTATGATATTAAAGATTTATTCAAAGTCCTCTAATTTTGCACT
1 TTATGATATTAAAGATTTATTCAAAGTCCTCTAATTTTGCACT
106921796 TTATGATATTAAAGATTTATTCAAAGTCCTCTAATTTTGCACT
1 TTATGATATTAAAGATTTATTCAAAGTCCTCTAATTTTGCACT
106921839 TTA
1 TTA
106921842 CTATGAGGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (43 bp):
TTATGATATTAAAGATTTATTCAAAGTCCTCTAATTTTGCACT
Found at i:106923133 original size:23 final size:25
Alignment explanation
Indices: 106923088--106923142 Score: 78
Period size: 23 Copynumber: 2.2 Consensus size: 25
106923078 TATGAAACTT
106923088 TTTAATTTACCTTTTAAAAATTCGATC
1 TTTAATTTACCTTTT--AAATTCGATC
106923115 TTTAATTTACC-TTT-AATTCGATC
1 TTTAATTTACCTTTTAAATTCGATC
106923138 TTTAA
1 TTTAA
106923143 AAGTTGATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 14 0.50
26 3 0.11
27 11 0.39
ACGTcount: A:0.31, C:0.15, G:0.04, T:0.51
Consensus pattern (25 bp):
TTTAATTTACCTTTTAAATTCGATC
Found at i:106937248 original size:70 final size:70
Alignment explanation
Indices: 106937166--106937306 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
106937156 CATTGAATGG
106937166 ATATATGAATGTTTATTGTATTGTATTGAAAATATTAGGTAAGTATAATTCTTCTTAAATGAGCT
1 ATATATGAATGTTTATTGTATTGTATTGAAAATATTAGGTAAGTATAATTCTTCTTAAATGAGCT
106937231 TACTA
66 TACTA
106937236 ATATATGAATGTTTATTGTATTGTATTGAAAATATTAGGTAAGTATAATTCTTCTTAAATGAGCT
1 ATATATGAATGTTTATTGTATTGTATTGAAAATATTAGGTAAGTATAATTCTTCTTAAATGAGCT
106937301 TACTA
66 TACTA
106937306 A
1 A
106937307 GCACAAAGTG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (70 bp):
ATATATGAATGTTTATTGTATTGTATTGAAAATATTAGGTAAGTATAATTCTTCTTAAATGAGCT
TACTA
Found at i:106939396 original size:123 final size:123
Alignment explanation
Indices: 106939191--106939415 Score: 333
Period size: 123 Copynumber: 1.8 Consensus size: 123
106939181 CTGGATCTGC
* * ** *
106939191 GAGCTCTTATAATGTCAAATGGGAACATAGGTCTGCTAGCTGTTTTAGAAGTTGTGATTTTAAAC
1 GAGCTCTTATAATGTCAAATGAGAACATAGGTCTGCTAGCTATTTTAGAAGTTGCAATCTTAAAC
* *
106939256 CGTCAAACCTTTATGACATCAGCTAGGAGCGTAGGTCTGCTAGCTGTGTCAGAGCTAT
66 CGTCAAACATTTATGACATCAGCTAGGAGAGTAGGTCTGCTAGCTGTGTCAGAGCTAT
* * * *
106939314 GAGCTCTTATAATGTCAACTGAGAGCGTAGGTCTGCTAGCTATTTTAGAGGTTGCAATCTTAAAC
1 GAGCTCTTATAATGTCAAATGAGAACATAGGTCTGCTAGCTATTTTAGAAGTTGCAATCTTAAAC
* *
106939379 CGTCAAACATTTGTGACATCAGCTGGGAGAGTAGGTC
66 CGTCAAACATTTATGACATCAGCTAGGAGAGTAGGTC
106939416 CGTTAGTTTC
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
123 89 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (123 bp):
GAGCTCTTATAATGTCAAATGAGAACATAGGTCTGCTAGCTATTTTAGAAGTTGCAATCTTAAAC
CGTCAAACATTTATGACATCAGCTAGGAGAGTAGGTCTGCTAGCTGTGTCAGAGCTAT
Found at i:106939492 original size:69 final size:68
Alignment explanation
Indices: 106939328--106939492 Score: 213
Period size: 69 Copynumber: 2.4 Consensus size: 68
106939318 TCTTATAATG
* * * *
106939328 TCAACTGAGAGCGTAGGTCTGCTAGCTATTTTAGAGGTTGCAATCTTAAACCGTCAAACATTTGT
1 TCAACTGGGAGCGTAGGTCTGCTAG-TTTTTTAGAGGTTGCAATCTTAAACCGTCAAACATCTAT
106939393 GACA
65 GACA
* * * * * * *
106939397 TCAGCTGGGAGAGTAGGTCCGTTAGTTTCTTTGGAGGTTGCGATCTTAAACCGTCAAACCTCTAT
1 TCAACTGGGAGCGTAGGTCTGCTAGTTT-TTTAGAGGTTGCAATCTTAAACCGTCAAACATCTAT
106939462 GACA
65 GACA
106939466 TCAACTGGGAGCGTAGGTCTGCTAGTT
1 TCAACTGGGAGCGTAGGTCTGCTAGTT
106939493 GTGTCAGAGC
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
68 2 0.03
69 78 0.98
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (68 bp):
TCAACTGGGAGCGTAGGTCTGCTAGTTTTTTAGAGGTTGCAATCTTAAACCGTCAAACATCTATG
ACA
Found at i:106939599 original size:69 final size:67
Alignment explanation
Indices: 106939337--106939629 Score: 209
Period size: 69 Copynumber: 4.3 Consensus size: 67
106939327 GTCAACTGAG
* * * *
106939337 AGCGTAGGTCTGCTAGCTATTTTAGAGGTTGCAATCTTAAACCGTCAAACATTTGTGACATCAGC
1 AGCGTAGGTCTGCTAGCTACTTTAGAGGTTGCGATCTTAAACCGTCAAACCTTTAT-A-ATCAGC
*
106939402 TGGG
64 TGGA
* * * * * * * *
106939406 AGAGTAGGTCCGTTAGTTTCTTTGGAGGTTGCGATCTTAAACCGTCAAACCTCTATGACATCAAC
1 AGCGTAGGTCTGCTAGCTACTTTAGAGGTTGCGATCTTAAACCGTCAAACCTTTAT-A-ATCAGC
*
106939471 TGGG
64 TGGA
** * * * * * * *
106939475 AGCGTAGGTCTGCTAG-TTGTGTCAGA-GCTGTGAGCTT-AACTCTGT-GAGCTTTTATAATGCC
1 AGCGTAGGTCTGCTAGCTACT-TTAGAGGTTGCGATCTTAAAC-C-GTCAAACCTTTATAAT--C
106939536 AGCTGGA
61 AGCTGGA
* *
106939543 AGCGTAGGTCTGCTAGCTACTTTAGAGGTTGTGACCTTAAACCGTCAAACCTTTATAACATCAGC
1 AGCGTAGGTCTGCTAGCTACTTTAGAGGTTGCGATCTTAAACCGTCAAACCTTTAT-A-ATCAGC
106939608 TGG-
64 TGGA
* *
106939611 AGTGTAGGTCCGCTAGCTA
1 AGCGTAGGTCTGCTAGCTA
106939630 TGCCGAAGCT
Statistics
Matches: 176, Mismatches: 37, Indels: 23
0.75 0.16 0.10
Matches are distributed among these distances:
66 2 0.01
67 4 0.02
68 63 0.36
69 101 0.57
70 4 0.02
71 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (67 bp):
AGCGTAGGTCTGCTAGCTACTTTAGAGGTTGCGATCTTAAACCGTCAAACCTTTATAATCAGCTG
GA
Found at i:106939687 original size:136 final size:137
Alignment explanation
Indices: 106939425--106939694 Score: 312
Period size: 136 Copynumber: 2.0 Consensus size: 137
106939415 CCGTTAGTTT
* * * *
106939425 CTTTGGAGGTTGCGATCTTAAACCGTCAAACCTCTATGACATCAACTGGGAGCGTAGGTCTGCTA
1 CTTTAGAGGTTGCGACCTTAAACCGTCAAACCTCTATAACATCAACTGGGAGCGTAGGTCCGCTA
* * * *** * * * * * *
106939490 GTTGTGTCAGAGCTGTGAGCTTAACTCTGTGAGCTTTTATAATGCCAGCTGGAAGCGTAGGTCTG
66 GCTATGCCAGAGCTACAAGCTTAACTCTGCGAGCTCTTATAATGCCAACTAGAAGCATAGGTCTA
106939555 CTAGCTA
131 CTAGCTA
* * * *
106939562 CTTTAGAGGTTGTGACCTTAAACCGTCAAACCTTTATAACATCAGCT-GGAGTGTAGGTCCGCTA
1 CTTTAGAGGTTGCGACCTTAAACCGTCAAACCTCTATAACATCAACTGGGAGCGTAGGTCCGCTA
*
106939626 GCTATGCC-GAAGCTACAAGCTTAACTCTGCGAGCTCTTATAATGTCAACTA-AGAGCATAGGTC
66 GCTATGCCAG-AGCTACAAGCTTAACTCTGCGAGCTCTTATAATGCCAACTAGA-AGCATAGGTC
106939689 TACTAG
129 TACTAG
106939695 TTGTGTTGGA
Statistics
Matches: 110, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
135 2 0.02
136 67 0.61
137 41 0.37
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (137 bp):
CTTTAGAGGTTGCGACCTTAAACCGTCAAACCTCTATAACATCAACTGGGAGCGTAGGTCCGCTA
GCTATGCCAGAGCTACAAGCTTAACTCTGCGAGCTCTTATAATGCCAACTAGAAGCATAGGTCTA
CTAGCTA
Found at i:106946741 original size:43 final size:43
Alignment explanation
Indices: 106946694--106946934 Score: 250
Period size: 43 Copynumber: 5.6 Consensus size: 43
106946684 AGAAAGTGCA
***
106946694 GCTAAA-AACGTGACCTTTAGCGGCTTTTTTTCACACAAACGCC
1 GCTAAAGAACGTGACCTTTAGCGGC-GCCTTTCACACAAACGCC
* ** * * * *
106946737 GCTAAACAATATGACATTTAGCGACGCTTTTCACAGAAACGCC
1 GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCC
* *
106946780 GCTAAAGAATGTGACCTTTAGCGGCGCCTTTCACACAAACGCT
1 GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCC
* * * * * **
106946823 ACTAAAGAACGTGACTTTTAACGACGCCTTTCACACAAGCGAT
1 GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCC
* * * *
106946866 GCTAAAGAACGTGACTTTTAGCGGTGCCTTTCACAAAAACGTC
1 GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCC
*
106946909 GCTAAAGAACATGACCTTTAGCGGCG
1 GCTAAAGAACGTGACCTTTAGCGGCG
106946935 TTTTTAGTAA
Statistics
Matches: 165, Mismatches: 32, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
43 151 0.92
44 14 0.08
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
GCTAAAGAACGTGACCTTTAGCGGCGCCTTTCACACAAACGCC
Found at i:106947755 original size:13 final size:14
Alignment explanation
Indices: 106947715--106947757 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
106947705 ACTAACGACG
106947715 AATTAAACCATTAT
1 AATTAAACCATTAT
*
106947729 AACTAAACCATTAT
1 AATTAAACCATTAT
106947743 AATTAAA-CATTAT
1 AATTAAACCATTAT
106947756 AA
1 AA
106947758 ATATTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 8 0.30
14 19 0.70
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:106949046 original size:25 final size:28
Alignment explanation
Indices: 106949018--106949071 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
106949008 AATTAAAAAA
*
106949018 TCATAAA-ATCTT-AT-TACATCATAAT
1 TCATAAATATCTTCATCCACATCATAAT
106949043 TCATAAATATCTTCATCCACATCATAAT
1 TCATAAATATCTTCATCCACATCATAAT
106949071 T
1 T
106949072 GCTTAGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 7 0.28
26 5 0.20
27 2 0.08
28 11 0.44
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (28 bp):
TCATAAATATCTTCATCCACATCATAAT
Found at i:106954580 original size:19 final size:19
Alignment explanation
Indices: 106954556--106954592 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
106954546 GTTGCGAGCT
106954556 CCTTTGGCGAACCCTCACC
1 CCTTTGGCGAACCCTCACC
*
106954575 CCTTTGGCGAACCTTCAC
1 CCTTTGGCGAACCCTCAC
106954593 TACAAGGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.43, G:0.16, T:0.24
Consensus pattern (19 bp):
CCTTTGGCGAACCCTCACC
Found at i:106971521 original size:57 final size:58
Alignment explanation
Indices: 106971449--106971560 Score: 174
Period size: 57 Copynumber: 1.9 Consensus size: 58
106971439 CTATTATTAA
* *
106971449 ATTTTAATAAGATTATTATTAAGTATAATTTAATAAAAA-AATAAATAATTTAATCAT
1 ATTTTAATAAGATTATCATTAAATATAATTTAATAAAAATAATAAATAATTTAATCAT
*
106971506 ATTTTAATATA-ATTATCATTAAATATAATTTAATAAAAATAATATATAATTTAAT
1 ATTTTAATA-AGATTATCATTAAATATAATTTAATAAAAATAATAAATAATTTAAT
106971561 AATTGCACAC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
57 35 0.70
58 15 0.30
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (58 bp):
ATTTTAATAAGATTATCATTAAATATAATTTAATAAAAATAATAAATAATTTAATCAT
Found at i:106973153 original size:30 final size:30
Alignment explanation
Indices: 106973119--106973181 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
106973109 ATTTATTTTA
106973119 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
106973149 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
106973179 TTG
1 TTG
106973182 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:106973320 original size:11 final size:12
Alignment explanation
Indices: 106973304--106973339 Score: 56
Period size: 11 Copynumber: 3.0 Consensus size: 12
106973294 ATATATATTT
106973304 AAAAATAATA-A
1 AAAAATAATATA
106973315 AAAAATAATATA
1 AAAAATAATATA
106973327 AAAAATTAATATA
1 AAAAA-TAATATA
106973340 GGCGGGGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 10 0.43
12 6 0.26
13 7 0.30
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (12 bp):
AAAAATAATATA
Found at i:106984479 original size:2 final size:2
Alignment explanation
Indices: 106984472--106984500 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
106984462 ATTCATTTTA
106984472 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
106984501 AAAGTAGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:106984485 original size:42 final size:42
Alignment explanation
Indices: 106984349--106984474 Score: 243
Period size: 42 Copynumber: 3.0 Consensus size: 42
106984339 ATATCCTTTC
106984349 AATTTTTATATTTAAAACACTATCATACTATTCATTTTAATA
1 AATTTTTATATTTAAAACACTATCATACTATTCATTTTAATA
*
106984391 AATTTTTATATTTAAAACACTATCATACTATTTATTTTAATA
1 AATTTTTATATTTAAAACACTATCATACTATTCATTTTAATA
106984433 AATTTTTATATTTAAAACACTATCATACTATTCATTTTAATA
1 AATTTTTATATTTAAAACACTATCATACTATTCATTTTAATA
106984475 TATATATATA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.48
Consensus pattern (42 bp):
AATTTTTATATTTAAAACACTATCATACTATTCATTTTAATA
Found at i:106985720 original size:22 final size:22
Alignment explanation
Indices: 106985695--106985737 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
106985685 TATCCAAATA
106985695 ATAATAACAAAATAACAACAAT
1 ATAATAACAAAATAACAACAAT
** *
106985717 ATAATAGTAAAATGACAACAA
1 ATAATAACAAAATAACAACAA
106985738 AACAGTGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.12, G:0.05, T:0.19
Consensus pattern (22 bp):
ATAATAACAAAATAACAACAAT
Found at i:106985771 original size:21 final size:22
Alignment explanation
Indices: 106985736--106985776 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
106985726 AAATGACAAC
106985736 AAAACAGTGGGAAAACAACAGG
1 AAAACAGTGGGAAAACAACAGG
*
106985758 AAAATAGT-GGAAAACAACA
1 AAAACAGTGGGAAAACAACA
106985777 TTTTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.59, C:0.12, G:0.22, T:0.07
Consensus pattern (22 bp):
AAAACAGTGGGAAAACAACAGG
Found at i:106991575 original size:13 final size:13
Alignment explanation
Indices: 106991557--106991584 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
106991547 ATAAAATTGG
106991557 AAAGATGAAAAAT
1 AAAGATGAAAAAT
106991570 AAAGATGAAAAAT
1 AAAGATGAAAAAT
106991583 AA
1 AA
106991585 TAAAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGATGAAAAAT
Found at i:106992810 original size:49 final size:49
Alignment explanation
Indices: 106992726--106992836 Score: 120
Period size: 49 Copynumber: 2.2 Consensus size: 49
106992716 TTAAGCTCTT
106992726 ATGAGCTTCCTGTTATTAAGCCTGGATAAGATTCCCG-TTACAA-GCTCA
1 ATGAGCTTCCTGTTATTAAGCCTGGATAAGATTCCCGTTTA-AATGCTCA
* ** * *
106992774 CATGAGCTTTCTGTTATTTGGCTTGGA-AGAGCTTCCCGTTTAAATGCTCA
1 -ATGAGCTTCCTGTTATTAAGCCTGGATA-AGATTCCCGTTTAAATGCTCA
106992824 ATGAGCATTCCTG
1 ATGAGC-TTCCTG
106992837 AATATGAATT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
48 1 0.02
49 38 0.73
50 13 0.25
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (49 bp):
ATGAGCTTCCTGTTATTAAGCCTGGATAAGATTCCCGTTTAAATGCTCA
Found at i:106994774 original size:46 final size:46
Alignment explanation
Indices: 106994709--106994940 Score: 313
Period size: 46 Copynumber: 5.0 Consensus size: 46
106994699 TTATCTTTGA
* * * * * *
106994709 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** *
106994755 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
106994801 CACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
106994847 CAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
106994893 CAAGTTGCCATGGTATCTTTCAACCATGGTCTTCCACATTTCATAT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
106994939 CA
1 CA
106994941 GAGAGCACAC
Statistics
Matches: 171, Mismatches: 14, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 167 0.98
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.38
Consensus pattern (46 bp):
CATGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:106996959 original size:22 final size:19
Alignment explanation
Indices: 106996934--106996978 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 19
106996924 GTTTGCTTTG
*
106996934 TTTCTTTATTTCTCTTCTTTTT
1 TTTCTTT-TTTC-CTT-TTTAT
106996956 TTTCTTTTTTCCTTTTTAT
1 TTTCTTTTTTCCTTTTTAT
106996975 TTTC
1 TTTC
106996979 CCTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 3 0.14
21 4 0.18
22 7 0.32
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTCTTTTTTCCTTTTTAT
Found at i:106998930 original size:46 final size:46
Alignment explanation
Indices: 106998822--106998952 Score: 176
Period size: 46 Copynumber: 2.8 Consensus size: 46
106998812 GGAAATTGAG
*
106998822 ATCCGAACTCGTTAAGTTGCGTTCCGAGTTCACTTATGGATGCAAGC
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAGC
* *
106998869 ATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGTGAA-C
1 ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATG-CAAGC
* *
106998915 A-CCTGAGCTCTTTGAGTTGCGTTCCGAGTTCATTATGG
1 ATCC-GAACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
106998953 GTGAAATTAT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
45 2 0.03
46 42 0.55
47 32 0.42
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAGC
Found at i:107001226 original size:16 final size:16
Alignment explanation
Indices: 107001205--107001235 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
107001195 TTATGCATGC
*
107001205 AAAATATAAAAGACAG
1 AAAATAAAAAAGACAG
107001221 AAAATAAAAAAGACA
1 AAAATAAAAAAGACA
107001236 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.06, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATAAAAAAGACAG
Found at i:107007892 original size:46 final size:45
Alignment explanation
Indices: 107007840--107008043 Score: 197
Period size: 46 Copynumber: 4.5 Consensus size: 45
107007830 GTCGATGCCG
* * *
107007840 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
107007886 TGTCCCAGACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
107007930 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
107007976 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
107008022 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
107008044 AGCCCTCGTC
Statistics
Matches: 139, Mismatches: 9, Indels: 20
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.04
44 33 0.24
45 4 0.03
46 97 0.70
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:107015949 original size:29 final size:29
Alignment explanation
Indices: 107015905--107015987 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 29
107015895 TTTAAAATGA
107015905 AAAAAACTTACAAAAATTATAAAAACTATTT
1 AAAAAA-TTA-AAAAATTATAAAAACTATTT
* **
107015936 AAAAAATTATAAAAA-TATATAATTTATTT
1 AAAAAATTA-AAAAATTATAAAAACTATTT
* *
107015965 AAAATATTAAAAAATTGTAAAAA
1 AAAAAATTAAAAAATTATAAAAA
107015988 ACCGTTAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
28 5 0.12
29 24 0.56
30 8 0.19
31 6 0.14
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.33
Consensus pattern (29 bp):
AAAAAATTAAAAAATTATAAAAACTATTT
Found at i:107016381 original size:38 final size:38
Alignment explanation
Indices: 107016328--107016405 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
107016318 GAGTCGTTCT
*
107016328 ATGTCTTTCAATCTGAAAATCTTAGGCGCTTCTTCTCC
1 ATGTCTTTCAATCTGAAAATCTAAGGCGCTTCTTCTCC
*
107016366 ATGTCTTTCAGTCTGAAAATCTAAGGCGCTTCTTCTCC
1 ATGTCTTTCAATCTGAAAATCTAAGGCGCTTCTTCTCC
107016404 AT
1 AT
107016406 TGCACACCGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (38 bp):
ATGTCTTTCAATCTGAAAATCTAAGGCGCTTCTTCTCC
Found at i:107019529 original size:18 final size:18
Alignment explanation
Indices: 107019509--107019542 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
107019499 TTTTACTAAT
107019509 TTTTTA-ATATTTTAAAA
1 TTTTTATATATTTTAAAA
107019526 TTTTTATATATTTTAAA
1 TTTTTATATATTTTAAA
107019543 TAAATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTATATATTTTAAAA
Found at i:107026997 original size:19 final size:19
Alignment explanation
Indices: 107026891--107026994 Score: 60
Period size: 20 Copynumber: 5.5 Consensus size: 19
107026881 ATTTTGAATG
**
107026891 TTAAATTTAAACTCGGATC
1 TTAAATTTAAACTCAAATC
*
107026910 TTGAATTTTAAACTCCAAAT-
1 TT-AAATTTAAACT-CAAATC
*
107026930 TTAAAATTCAAACTCTAAA-C
1 TT-AAATTTAAACTC-AAATC
*
107026950 TTTAAATTT----T-GAATC
1 -TTAAATTTAAACTCAAATC
107026965 TTAAATTTAAACTCAAATC
1 TTAAATTTAAACTCAAATC
107026984 TTAAATCTTAA
1 TTAAAT-TTAA
107026995 CTCTTGAACT
Statistics
Matches: 64, Mismatches: 9, Indels: 23
0.67 0.09 0.24
Matches are distributed among these distances:
14 10 0.16
15 1 0.02
16 1 0.02
18 1 0.02
19 13 0.20
20 33 0.52
21 5 0.08
ACGTcount: A:0.42, C:0.14, G:0.04, T:0.39
Consensus pattern (19 bp):
TTAAATTTAAACTCAAATC
Found at i:107027021 original size:27 final size:28
Alignment explanation
Indices: 107026961--107027026 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
107026951 TTAAATTTTG
*
107026961 AATCTTAAA-T-TTAAACTCAAATCTTA
1 AATCTTAAACTCTTGAACTCAAATCTTA
107026987 AATCTT-AACTCTTGAACTCAAAAT-TTAA
1 AATCTTAAACTCTTGAACTC-AAATCTT-A
107027015 AAT-TTAAACTCT
1 AATCTTAAACTCT
107027027 AACTTTCGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
25 2 0.06
26 7 0.21
27 11 0.32
28 14 0.41
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.38
Consensus pattern (28 bp):
AATCTTAAACTCTTGAACTCAAATCTTA
Found at i:107027023 original size:74 final size:74
Alignment explanation
Indices: 107026879--107027024 Score: 168
Period size: 74 Copynumber: 2.0 Consensus size: 74
107026869 TTTTTACTCA
* ** * * * * *
107026879 AAATTTTGAATGTTAAATTTAAACTCGGATCTTGAATTTTAAACTCCAAATTTAAAATTCAAACT
1 AAATTTTGAATCTTAAATTTAAACTCAAATCTTAAATCTTAAACTCCAAACTCAAAATTCAAAAT
107026944 CTAAACTTT
66 CTAAACTTT
** *
107026953 AAATTTTGAATCTTAAATTTAAACTCAAATCTTAAATCTT-AACTCTTGAACTCAAAATTTAAAA
1 AAATTTTGAATCTTAAATTTAAACTCAAATCTTAAATCTTAAACTC-CAAACTCAAAATTCAAAA
*
107027017 TTTAAACT
65 TCTAAACT
107027025 CTAACTTTCG
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
73 5 0.08
74 54 0.92
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (74 bp):
AAATTTTGAATCTTAAATTTAAACTCAAATCTTAAATCTTAAACTCCAAACTCAAAATTCAAAAT
CTAAACTTT
Found at i:107028996 original size:23 final size:22
Alignment explanation
Indices: 107028954--107028999 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
107028944 TATATACATG
107028954 TAAAATTTATGTATTTAAAATA
1 TAAAATTTATGTATTTAAAATA
*
107028976 TAAATATTTAT-TTTTTAAAA-A
1 TAAA-ATTTATGTATTTAAAATA
107028997 TAA
1 TAA
107029000 TTTAGATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 12 0.55
23 6 0.27
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TAAAATTTATGTATTTAAAATA
Found at i:107029753 original size:30 final size:30
Alignment explanation
Indices: 107029717--107029777 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
107029707 CATGCTTATG
107029717 ACTGTTGATGTAATGCAATTTCAGTTTAAC
1 ACTGTTGATGTAATGCAATTTCAGTTTAAC
107029747 ACTGTTGATGTAATGCAATTTCAGTTTAAC
1 ACTGTTGATGTAATGCAATTTCAGTTTAAC
107029777 A
1 A
107029778 ATAAAGAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (30 bp):
ACTGTTGATGTAATGCAATTTCAGTTTAAC
Found at i:107030011 original size:92 final size:90
Alignment explanation
Indices: 107029852--107030059 Score: 255
Period size: 91 Copynumber: 2.3 Consensus size: 90
107029842 CGGACACTCT
* * *
107029852 AGTTTGTGGATAAATCA-CAAGTGTTGCA-A-GTTAATACACTGCCAATAGTTGTGAATACACAA
1 AGTTTGTGGATAAACCACCAA-TGTT-TATAGGTTAATACACTGCCAATAGTTATGAATACACAA
*
107029914 TGGGTTTGCAGATAAAAGCTGTTAGTAA-A
64 TGGGTTTGCAGATAAAAGC---TACTAATA
**
107029943 AG-TTGTGGATAAACCACCAATGTTTATAGGTTAATACGTTGCCAATAGGTTATGAATACACAAT
1 AGTTTGTGGATAAACCACCAATGTTTATAGGTTAATACACTGCCAATA-GTTATGAATACACAAT
107030007 GGGTTTGCAGATAAAAGCTACTAATA
65 GGGTTTGCAGATAAAAGCTACTAATA
* *
107030033 AGTTTGTGGATGAACCACCAGTGTTTA
1 AGTTTGTGGATAAACCACCAATGTTTA
107030060 CAGATAAACT
Statistics
Matches: 103, Mismatches: 8, Indels: 12
0.84 0.07 0.10
Matches are distributed among these distances:
89 6 0.06
90 21 0.20
91 43 0.42
92 33 0.32
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (90 bp):
AGTTTGTGGATAAACCACCAATGTTTATAGGTTAATACACTGCCAATAGTTATGAATACACAATG
GGTTTGCAGATAAAAGCTACTAATA
Found at i:107034587 original size:3 final size:3
Alignment explanation
Indices: 107034579--107034615 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
107034569 AATATTATAA
107034579 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
107034616 TGCTTTAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:107034752 original size:28 final size:28
Alignment explanation
Indices: 107034707--107034773 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
107034697 TAACTTTCTT
* *
107034707 TATATATTATTTAGAATTTTTTTAAAATAA
1 TATA-ATTTTTTAGAATTTTTAT-AAATAA
*
107034737 TATAATTTTTTA-AATTTTTATAAATAT
1 TATAATTTTTTAGAATTTTTATAAATAA
*
107034764 TTTAATTTTT
1 TATAATTTTT
107034774 GAAAATTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 14 0.42
28 8 0.24
29 7 0.21
30 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (28 bp):
TATAATTTTTTAGAATTTTTATAAATAA
Found at i:107034783 original size:19 final size:19
Alignment explanation
Indices: 107034740--107034792 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
107034730 AAAATAATAT
107034740 AATT-TTTTAAATTTTTATA
1 AATTATTTT-AATTTTTATA
107034759 AA-TATTTTAATTTTTGA-A
1 AATTATTTTAATTTTT-ATA
*
107034777 AATTATTTTGATTTTT
1 AATTATTTTAATTTTT
107034793 TTTAAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 11 0.37
19 19 0.63
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (19 bp):
AATTATTTTAATTTTTATA
Found at i:107035175 original size:42 final size:43
Alignment explanation
Indices: 107035094--107035175 Score: 107
Period size: 42 Copynumber: 1.9 Consensus size: 43
107035084 TTTTACTTTA
* *
107035094 TTTTTAGTTTTTAATTTTAAAAGTTATGTAATAATATTTTATT
1 TTTTTAATTTTTAATTTTAAAAGTTATGTAATAAAATTTTATT
107035137 TTTTTAATTTTT-ATTTT-AAA-TTATGTCACATAAAATTTT
1 TTTTTAATTTTTAATTTTAAAAGTTATGT-A-ATAAAATTTT
107035176 TCGTGTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
40 6 0.17
41 4 0.11
42 14 0.40
43 11 0.31
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (43 bp):
TTTTTAATTTTTAATTTTAAAAGTTATGTAATAAAATTTTATT
Found at i:107046579 original size:1 final size:1
Alignment explanation
Indices: 107046573--107046597 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
107046563 TATTTTCTTG
107046573 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
107046598 CTGCTGCTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:107060911 original size:19 final size:19
Alignment explanation
Indices: 107060872--107060911 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
107060862 TTGGTTAAGC
* *
107060872 TTTATAATATTTAATTCTA
1 TTTATAATATTCAAATCTA
*
107060891 TTTATAATATTCAAATGTA
1 TTTATAATATTCAAATCTA
107060910 TT
1 TT
107060912 CGATATAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (19 bp):
TTTATAATATTCAAATCTA
Found at i:107061217 original size:10 final size:10
Alignment explanation
Indices: 107061202--107061228 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
107061192 TTTATATTTA
107061202 TTTTATTCAT
1 TTTTATTCAT
107061212 TTTTATTCAT
1 TTTTATTCAT
107061222 TTTTATT
1 TTTTATT
107061229 TTTAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTATTCAT
Found at i:107061218 original size:19 final size:19
Alignment explanation
Indices: 107061176--107061224 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
107061166 TATATTTTTG
107061176 TTATTTA-TTTATGTATTT
1 TTATTTATTTTATGTATTT
107061194 TATATTTATTTTAT-TCATTT
1 T-TATTTATTTTATGT-ATTT
*
107061214 TTATTCATTTT
1 TTATTTATTTT
107061225 TATTTTTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 1 0.04
19 16 0.59
20 10 0.37
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (19 bp):
TTATTTATTTTATGTATTT
Found at i:107061537 original size:2 final size:2
Alignment explanation
Indices: 107061530--107061569 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
107061520 TCATTTGTAC
*
107061530 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
107061570 CATAAACTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:107063590 original size:19 final size:19
Alignment explanation
Indices: 107063566--107063603 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
107063556 ATTTTCTATG
107063566 TTTAAAATATGTAAATTGA
1 TTTAAAATATGTAAATTGA
107063585 TTTAAAATATGTAAATTGA
1 TTTAAAATATGTAAATTGA
107063604 CATGTGTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (19 bp):
TTTAAAATATGTAAATTGA
Found at i:107064884 original size:43 final size:43
Alignment explanation
Indices: 107064714--107064885 Score: 167
Period size: 43 Copynumber: 4.0 Consensus size: 43
107064704 AATGGATTTC
* *
107064714 CGATATGTGA-TATCGTGTAAGATCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
* *
107064757 C-A-ATTTAGTATTTACGTGTAAGACTACATCTGGGACGTTGGCAT
1 CGATATTT-G-A-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * **
107064801 CG-TATTTGATTTCGTGTAAGACTC-TGTCTAAGACAG-TGGCAT
1 CGATATTTGATTACGTGTAAGAC-CACGTCTGGGAC-GTTGGCAT
*
107064843 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
107064886 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 15, Indels: 22
0.74 0.11 0.16
Matches are distributed among these distances:
41 3 0.03
42 30 0.29
43 35 0.34
44 29 0.28
45 6 0.06
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:107067444 original size:25 final size:25
Alignment explanation
Indices: 107067415--107067472 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
107067405 CAGTTGAAAA
* *
107067415 CCAAAAATGAGAAGGATCCATCTAG
1 CCAAAAACGACAAGGATCCATCTAG
* *
107067440 CCAAAAACGACAAGGATCTATCTAA
1 CCAAAAACGACAAGGATCCATCTAG
*
107067465 TCAAAAAC
1 CCAAAAAC
107067473 ACATGTGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.48, C:0.22, G:0.14, T:0.16
Consensus pattern (25 bp):
CCAAAAACGACAAGGATCCATCTAG
Found at i:107071068 original size:25 final size:25
Alignment explanation
Indices: 107071020--107071068 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
107071010 CATAATTGAA
* * *
107071020 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
107071045 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
107071069 ATGTGTATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:107071078 original size:17 final size:17
Alignment explanation
Indices: 107071041--107071083 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
107071031 TGATTTTGTA
107071041 TATTATGAAATATATTG
1 TATTATGAAATATATTG
107071058 -ATTATG-AATATATGTG
1 TATTATGAAATATAT-TG
*
107071074 TATTAAGAAA
1 TATTATGAAA
107071084 AATGTGATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 7 0.32
16 8 0.36
17 5 0.23
18 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (17 bp):
TATTATGAAATATATTG
Found at i:107074120 original size:2 final size:2
Alignment explanation
Indices: 107074109--107074168 Score: 63
Period size: 2 Copynumber: 31.0 Consensus size: 2
107074099 TCTTTTAGGA
* * *
107074109 AT AT AT -T AT AT AT CT AT AT AT TT AGG A- AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
107074149 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
107074169 TTCAATTTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
1 3 0.06
2 45 0.92
3 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107074136 original size:27 final size:29
Alignment explanation
Indices: 107074102--107074158 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
107074092 GATATTATCT
*
107074102 TTTAGGAATA-TAT-TATATATCTATATA
1 TTTAGGAATATTATATATATATATATATA
107074129 TTTAGGAATATTATATATATATATATATA
1 TTTAGGAATATTATATATATATATATATA
107074158 T
1 T
107074159 ATATATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 10 0.37
28 3 0.11
29 14 0.52
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (29 bp):
TTTAGGAATATTATATATATATATATATA
Found at i:107076125 original size:31 final size:31
Alignment explanation
Indices: 107076056--107076114 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
107076046 TTAGATAAAA
* * *
107076056 AAATTAAAGTTTTAATATAGAAATATTTACT
1 AAATTCAAGTCTTAATATAAAAATATTTACT
107076087 AAATTCAAGTCTTAATATAAAAATATTT
1 AAATTCAAGTCTTAATATAAAAATATTT
107076115 GTCAAATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (31 bp):
AAATTCAAGTCTTAATATAAAAATATTTACT
Found at i:107078035 original size:21 final size:21
Alignment explanation
Indices: 107078010--107078050 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
107078000 AAATGGCGAG
*
107078010 GGAGATAGAGACGATGAGGAT
1 GGAGATAGAGACGAAGAGGAT
* *
107078031 GGAGATGGAGATGAAGAGGA
1 GGAGATAGAGACGAAGAGGA
107078051 CCGAGGTGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.02, G:0.46, T:0.12
Consensus pattern (21 bp):
GGAGATAGAGACGAAGAGGAT
Found at i:107079691 original size:16 final size:16
Alignment explanation
Indices: 107079670--107079701 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
107079660 AAGAAGCACA
107079670 ACAGATAAATTTATCT
1 ACAGATAAATTTATCT
107079686 ACAGATAAATTTATCT
1 ACAGATAAATTTATCT
107079702 TCTTTGACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (16 bp):
ACAGATAAATTTATCT
Found at i:107080804 original size:31 final size:31
Alignment explanation
Indices: 107080769--107080830 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
107080759 AAGATTTAAA
107080769 CTTCAAAAACAAGTAACGAGAAAAAGAAACT
1 CTTCAAAAACAAGTAACGAGAAAAAGAAACT
107080800 CTTCAAAAACAAGTAACGAGAAAAAGAAACT
1 CTTCAAAAACAAGTAACGAGAAAAAGAAACT
107080831 TACTTTTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.58, C:0.16, G:0.13, T:0.13
Consensus pattern (31 bp):
CTTCAAAAACAAGTAACGAGAAAAAGAAACT
Found at i:107097667 original size:15 final size:15
Alignment explanation
Indices: 107097643--107097688 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
107097633 ATATAAATAG
*
107097643 AAATAAAAATATAAT
1 AAATAGAAATATAAT
107097658 AAATAGAAATATAAT
1 AAATAGAAATATAAT
107097673 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
107097689 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:107097689 original size:29 final size:29
Alignment explanation
Indices: 107097656--107097772 Score: 87
Period size: 29 Copynumber: 4.0 Consensus size: 29
107097646 TAAAAATATA
107097656 ATAAATAGAAATATAATAATAGTAGAAAT
1 ATAAATAGAAATATAATAATAGTAGAAAT
* *
107097685 ATAAATAGATAA-ATAAAAATTAG-ATAAAT
1 ATAAATAGA-AATATAATAA-TAGTAGAAAT
* * * * ** *
107097714 A-ATAATAGTATTAGAATAACAAAATAAAT
1 ATA-AATAGAAATATAATAATAGTAGAAAT
* *
107097743 ATAAATAGAAACATAATAATAGTAGTAAT
1 ATAAATAGAAATATAATAATAGTAGAAAT
107097772 A
1 A
107097773 ATATATTAAA
Statistics
Matches: 65, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
28 3 0.05
29 56 0.86
30 6 0.09
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.27
Consensus pattern (29 bp):
ATAAATAGAAATATAATAATAGTAGAAAT
Found at i:107097708 original size:15 final size:14
Alignment explanation
Indices: 107097635--107097764 Score: 63
Period size: 15 Copynumber: 9.0 Consensus size: 14
107097625 ATATTACCAT
*
107097635 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
107097648 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
107097664 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
107097678 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
107097693 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
107097708 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
107097722 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
107097737 ATAAATATAAATAG
1 ATAAATAAAAATAG
*
107097751 A-AACATAATAATAG
1 ATAA-ATAAAAATAG
107097765 TAGTAATAAT
Statistics
Matches: 92, Mismatches: 13, Indels: 23
0.72 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 8 0.09
14 30 0.33
15 35 0.38
16 6 0.07
17 7 0.08
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:107097784 original size:46 final size:43
Alignment explanation
Indices: 107097648--107097785 Score: 122
Period size: 44 Copynumber: 3.1 Consensus size: 43
107097638 AATAGAAATA
* *
107097648 AAAATATA-ATAAATAGAAATATAATAATAGTAGAAAT-ATAA-
1 AAAATAAATATAAATAGAAA-ATAATAATAGTAGTAATAATAAT
* * * * *
107097689 ATAGATAAATAAAAATTAGATAAATAATAATAGTA-TTAGAATAAC
1 A-AAATAAATATAAA-TAGA-AAATAATAATAGTAGTAATAATAAT
107097734 AAAATAAATATAAATAGAAACATAATAATAGTAGTAATAATATATT
1 AAAATAAATATAAATAGAAA-ATAATAATAGTAGTAATAATA-A-T
107097780 AAAATA
1 AAAATA
107097786 GTTAATTTGA
Statistics
Matches: 76, Mismatches: 11, Indels: 15
0.75 0.11 0.15
Matches are distributed among these distances:
41 1 0.01
42 7 0.09
43 21 0.28
44 37 0.49
45 4 0.05
46 6 0.08
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.28
Consensus pattern (43 bp):
AAAATAAATATAAATAGAAAATAATAATAGTAGTAATAATAAT
Done.