Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 347 of 425
Found at i:107446637 original size:15 final size:16
Alignment explanation
Indices: 107446609--107446643 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
107446599 CTGAAATTCC
*
107446609 CTTTCTCTT-TTTTTT
1 CTTTCCCTTCTTTTTT
107446624 CTTTCCCTTCTTTTTT
1 CTTTCCCTTCTTTTTT
107446640 CTTT
1 CTTT
107446644 TTTTTCTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
CTTTCCCTTCTTTTTT
Found at i:107454485 original size:14 final size:15
Alignment explanation
Indices: 107454470--107454506 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
107454460 TAACAATTAA
107454470 ATTAGAAATAAAAAAT
1 ATTA-AAATAAAAAAT
107454486 ATTAAAAT-AAAAAT
1 ATTAAAATAAAAAAT
107454500 A-TAAAAT
1 ATTAAAAT
107454507 GACTAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.29
14 7 0.33
15 4 0.19
16 4 0.19
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
ATTAAAATAAAAAAT
Found at i:107454491 original size:21 final size:22
Alignment explanation
Indices: 107454465--107454527 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
107454455 GAATGTAACA
*
107454465 ATTAAATTAGAAATAAAAAAT-
1 ATTAAATTAAAAATAAAAAATG
* *
107454486 ATTAAAATAAAAATATAAAATG
1 ATTAAATTAAAAATAAAAAATG
*
107454508 ACTAAATTAATAGAATAAAA
1 ATTAAATTAA-A-AATAAAA
107454528 TTTTCCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 18 0.55
22 8 0.24
23 1 0.03
24 6 0.18
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.27
Consensus pattern (22 bp):
ATTAAATTAAAAATAAAAAATG
Found at i:107456050 original size:24 final size:25
Alignment explanation
Indices: 107456012--107456058 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
107456002 GTTATTTTAG
*
107456012 AAATATATATTTATTATTT-GAAAAT
1 AAATATATATCTATT-TTTCGAAAAT
107456037 AAAT-TATATCTATTTTTCGAAA
1 AAATATATATCTATTTTTCGAAA
107456059 GAGTATCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 3 0.15
24 13 0.65
25 4 0.20
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (25 bp):
AAATATATATCTATTTTTCGAAAAT
Found at i:107458066 original size:39 final size:39
Alignment explanation
Indices: 107458012--107458165 Score: 245
Period size: 39 Copynumber: 3.9 Consensus size: 39
107458002 TGCCTATTAT
*
107458012 TGCTACTGATATCTAAACTTAGACAGATAGCGACATTGA
1 TGCTACTGATATCTAAACTTAGACAGATAGCTACATTGA
* *
107458051 TGCTATTGATATCTAAACTTAGATAGATAGCTACATTGA
1 TGCTACTGATATCTAAACTTAGACAGATAGCTACATTGA
*
107458090 TGCTACTTATATCTAAACTTAGACAGATAGCTACATTGA
1 TGCTACTGATATCTAAACTTAGACAGATAGCTACATTGA
* * *
107458129 CGCAACTGATATCTAAACTTAGACAGATACCTACATT
1 TGCTACTGATATCTAAACTTAGACAGATAGCTACATT
107458166 TTTATTTTTT
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 105 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.31
Consensus pattern (39 bp):
TGCTACTGATATCTAAACTTAGACAGATAGCTACATTGA
Found at i:107459326 original size:36 final size:36
Alignment explanation
Indices: 107459285--107459358 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 36
107459275 GACTTACTAG
**** *
107459285 CTAGATGTAGTGTGTGGTGATATCATTAGGGCTTTT
1 CTAGATGTAGTGTGTAACAATATCATTAGGACTTTT
*
107459321 CTAGATGTTGTGTGTAACAATATCATTAGGACTTTT
1 CTAGATGTAGTGTGTAACAATATCATTAGGACTTTT
107459357 CT
1 CT
107459359 TGGTAGAGTG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.11, G:0.24, T:0.42
Consensus pattern (36 bp):
CTAGATGTAGTGTGTAACAATATCATTAGGACTTTT
Found at i:107459416 original size:16 final size:16
Alignment explanation
Indices: 107459381--107459431 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
107459371 AAAAAATTGG
*
107459381 AAAA-ATGGAAAATTA
1 AAAAGATGGAAAAATA
*
107459396 TAAAGATGGAAAAATA
1 AAAAGATGGAAAAATA
*
107459412 AAAAGAT-AAAAAATA
1 AAAAGATGGAAAAATA
*
107459427 TAAAG
1 AAAAG
107459432 TTTCTTTCCA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 14 0.47
16 16 0.53
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (16 bp):
AAAAGATGGAAAAATA
Found at i:107469193 original size:8 final size:9
Alignment explanation
Indices: 107469167--107469191 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
107469157 AGTATAATAC
107469167 ATTAAAAAT
1 ATTAAAAAT
107469176 ATTAAAAAT
1 ATTAAAAAT
107469185 ATTAAAA
1 ATTAAAA
107469192 TAAAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:107479433 original size:28 final size:28
Alignment explanation
Indices: 107479402--107479463 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
107479392 CTATGGAGAG
* * *
107479402 TATCTTTTTAATGGAAGTCCACAAGGAC
1 TATCTTATGAATGGAAGACCACAAGGAC
*
107479430 TATCTTATGAATGGAAGACCACATGGAC
1 TATCTTATGAATGGAAGACCACAAGGAC
*
107479458 CATCTT
1 TATCTT
107479464 GTGTGTCGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (28 bp):
TATCTTATGAATGGAAGACCACAAGGAC
Found at i:107480551 original size:2 final size:2
Alignment explanation
Indices: 107480503--107480533 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
107480493 TGAAATGATA
107480503 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107480534 TTGAAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107480937 original size:19 final size:19
Alignment explanation
Indices: 107480913--107480999 Score: 151
Period size: 19 Copynumber: 4.7 Consensus size: 19
107480903 TCATATTTTC
107480913 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
107480932 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
*
107480951 AAGATTG--TATCATTTCT
1 AAGATTGCATATCATATCT
107480968 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
107480987 AAGATTGCATATC
1 AAGATTGCATATC
107481000 CTTAAAGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
17 16 0.25
19 48 0.75
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:107481009 original size:36 final size:37
Alignment explanation
Indices: 107480913--107480999 Score: 142
Period size: 36 Copynumber: 2.4 Consensus size: 37
107480903 TCATATTTTC
107480913 AAGATTGCATATCATATCTAAGATTGCATATCATATCT
1 AAGATTGCATATCAT-TCTAAGATTGCATATCATATCT
107480951 AAGATTG--TATCATTTCTAAGATTGCATATCATATCT
1 AAGATTGCATATCA-TTCTAAGATTGCATATCATATCT
107480987 AAGATTGCATATC
1 AAGATTGCATATC
107481000 CTTAAAGATT
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
36 34 0.74
37 1 0.02
38 11 0.24
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (37 bp):
AAGATTGCATATCATTCTAAGATTGCATATCATATCT
Found at i:107485539 original size:20 final size:19
Alignment explanation
Indices: 107485505--107485576 Score: 101
Period size: 20 Copynumber: 3.7 Consensus size: 19
107485495 TAAAAAATAT
*
107485505 AAAT-TTTTGAATTTTTAT
1 AAATATTTTGAATTTTTAA
107485523 AAATATTTTGAATTTTTAA
1 AAATATTTTGAATTTTTAA
*
107485542 AAATCATTTTGATTTTTTAA
1 AAAT-ATTTTGAATTTTTAA
107485562 AAGATATTTTGAATT
1 AA-ATATTTTGAATT
107485577 ATTTTGTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
18 4 0.08
19 17 0.35
20 25 0.52
21 2 0.04
ACGTcount: A:0.38, C:0.01, G:0.07, T:0.54
Consensus pattern (19 bp):
AAATATTTTGAATTTTTAA
Found at i:107485831 original size:21 final size:21
Alignment explanation
Indices: 107485788--107485831 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
107485778 AATTTGAAAT
* *
107485788 TTGAATTTTTTTCGATTCGAA
1 TTGAATTTTGTTCGATCCGAA
* *
107485809 TTGAATTTTGTTCGCTCCTAA
1 TTGAATTTTGTTCGATCCGAA
107485830 TT
1 TT
107485832 ATTTTACTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.52
Consensus pattern (21 bp):
TTGAATTTTGTTCGATCCGAA
Found at i:107486681 original size:15 final size:15
Alignment explanation
Indices: 107486648--107486680 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
107486638 TTTTTAAATA
107486648 TTTTATTATTATTAT
1 TTTTATTATTATTAT
107486663 TTTTATTATTA-TAT
1 TTTTATTATTATTAT
107486677 TTTT
1 TTTT
107486681 TTAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTATTATTAT
Found at i:107486929 original size:3 final size:3
Alignment explanation
Indices: 107486923--107486959 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
107486913 AAAAAAAAAG
107486923 AGA AGA AGA AGA AGAA AGA AGA AGA AG- AGA AGA AGA A
1 AGA AGA AGA AGA AG-A AGA AGA AGA AGA AGA AGA AGA A
107486960 ATAAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:107486935 original size:21 final size:21
Alignment explanation
Indices: 107486914--107486967 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
107486904 CAAAGGTAGA
107486914 AAAAAAAAGAGAAGAAGAAGAAG
1 AAAAAAAA-AGAAG-AGAAGAAG
* *
107486937 AAAGAAGAAGAAGAGAAGAAG
1 AAAAAAAAAGAAGAGAAGAAG
107486958 AAATAAAAAA
1 AAA-AAAAAA
107486968 AAAGGTTAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 11 0.42
22 9 0.35
23 6 0.23
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAGAAGAGAAGAAG
Found at i:107486938 original size:24 final size:22
Alignment explanation
Indices: 107486911--107486971 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 22
107486901 GAGCAAAGGT
107486911 AGAAAAAAAAAGAGAAGAAGAAGA
1 AGAAAAAAAAAGAGAAGAAG-A-A
107486935 AGAAAGAAGAAGAAGAGAAGAAGAA
1 AGAAA-AA-AA-AAGAGAAGAAGAA
*
107486960 ATAAAAAAAAAG
1 AGAAAAAAAAAG
107486972 GTTAGTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 3 0.09
23 2 0.06
24 7 0.21
25 7 0.21
26 3 0.09
27 11 0.33
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (22 bp):
AGAAAAAAAAAGAGAAGAAGAA
Found at i:107487027 original size:17 final size:17
Alignment explanation
Indices: 107486984--107487038 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 17
107486974 TAGTTAAATT
107486984 TTTATAATTATTT-TAAA
1 TTTA-AATTATTTGTAAA
*
107487001 ATTAAATTATTTGT-AA
1 TTTAAATTATTTGTAAA
107487017 TTTAGAATTATTTGATAAA
1 TTTA-AATTATTTG-TAAA
107487036 TTT
1 TTT
107487039 TTGTGTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 13 0.41
17 13 0.41
18 1 0.03
19 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTATTTGTAAA
Found at i:107487096 original size:60 final size:60
Alignment explanation
Indices: 107486988--107487105 Score: 143
Period size: 60 Copynumber: 2.0 Consensus size: 60
107486978 TAAATTTTTA
* * *
107486988 TAATTATTTTAAAATTAAATTATTTGTAATTTAGAATTATTTGATAAATT-TTTGTGTTAG
1 TAATTAATTTAAAATTAAATTATTAGTAATTAAGAATTATTTGATAAATTATTT-TGTTAG
* *
107487048 TAATTAATTTAAAATTAATTTATTAGTAACTTAAG-ATTATATT-TTAAATTATTTTGTT
1 TAATTAATTTAAAATTAAATTATTAGTAA-TTAAGAATTAT-TTGATAAATTATTTTGTT
107487106 TAGTTTAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
60 41 0.82
61 9 0.18
ACGTcount: A:0.38, C:0.01, G:0.08, T:0.53
Consensus pattern (60 bp):
TAATTAATTTAAAATTAAATTATTAGTAATTAAGAATTATTTGATAAATTATTTTGTTAG
Found at i:107487401 original size:16 final size:17
Alignment explanation
Indices: 107487364--107487401 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
107487354 CTGTATTATG
*
107487364 ATTTTTTTAGAAATATA
1 ATTTTTTAAGAAATATA
*
107487381 TTTTTTTAAGAAA-ATA
1 ATTTTTTAAGAAATATA
107487397 ATTTT
1 ATTTT
107487402 ATAGTTGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
ATTTTTTAAGAAATATA
Found at i:107489771 original size:12 final size:12
Alignment explanation
Indices: 107489755--107489801 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
107489745 CGCCGGAGGT
*
107489755 AGAGCTGGAGCC
1 AGAGCCGGAGCC
*
107489767 GGAGCCGGAGCC
1 AGAGCCGGAGCC
*
107489779 AGAGCCGGAACC
1 AGAGCCGGAGCC
*
107489791 AGATCCGGAGC
1 AGAGCCGGAGC
107489802 TACACTCCGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.26, C:0.30, G:0.40, T:0.04
Consensus pattern (12 bp):
AGAGCCGGAGCC
Found at i:107489954 original size:33 final size:33
Alignment explanation
Indices: 107489917--107490061 Score: 164
Period size: 33 Copynumber: 4.4 Consensus size: 33
107489907 TACCACATCA
* ** *
107489917 GTACTCTACTACTTCTATCTCCTATCCACCACC
1 GTACTCTACTCCTTCTGGCTCATATCCACCACC
** * * *
107489950 GTACTCCGCTCCTTCCGGTTCCTATCCACCACC
1 GTACTCTACTCCTTCTGGCTCATATCCACCACC
**
107489983 GTACTCCGCTCCTTCTGGCTCATATCCACCACC
1 GTACTCTACTCCTTCTGGCTCATATCCACCACC
* *
107490016 GTACTCTACTCCTGCTGGCTCATATCCACCATC
1 GTACTCTACTCCTTCTGGCTCATATCCACCACC
*
107490049 GTACTCTGCTCCT
1 GTACTCTACTCCT
107490062 CCAGAGTCGT
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 97 1.00
ACGTcount: A:0.16, C:0.43, G:0.10, T:0.30
Consensus pattern (33 bp):
GTACTCTACTCCTTCTGGCTCATATCCACCACC
Found at i:107489982 original size:36 final size:33
Alignment explanation
Indices: 107489939--107490061 Score: 165
Period size: 33 Copynumber: 3.7 Consensus size: 33
107489929 TTCTATCTCC
* *
107489939 TATCCACCACCGTACTCCGCTCCTTCCGGTTCC
1 TATCCACCACCGTACTCCGCTCCTTCCGGCTCA
*
107489972 TATCCACCACCGTACTCCGCTCCTTCTGGCTCA
1 TATCCACCACCGTACTCCGCTCCTTCCGGCTCA
** * *
107490005 TATCCACCACCGTACTCTACTCCTGCTGGCTCA
1 TATCCACCACCGTACTCCGCTCCTTCCGGCTCA
* *
107490038 TATCCACCATCGTACTCTGCTCCT
1 TATCCACCACCGTACTCCGCTCCT
107490062 CCAGAGTCGT
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 82 1.00
ACGTcount: A:0.15, C:0.45, G:0.11, T:0.28
Consensus pattern (33 bp):
TATCCACCACCGTACTCCGCTCCTTCCGGCTCA
Found at i:107490118 original size:33 final size:33
Alignment explanation
Indices: 107490078--107490166 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
107490068 TCGTATCCGT
* *
107490078 CGCCGTTCTCTTCTCCCCCTGGCCCATATCCAG
1 CGCCGTTCTCTACTCCCCCCGGCCCATATCCAG
* *
107490111 CGTCGTTCTCTACTCCCCCCGGCCCGTATCCAG
1 CGCCGTTCTCTACTCCCCCCGGCCCATATCCAG
*
107490144 CGCCGTTCTCTACTCTCCCCGGC
1 CGCCGTTCTCTACTCCCCCCGGC
107490167 TCGAGTTCAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.08, C:0.49, G:0.17, T:0.26
Consensus pattern (33 bp):
CGCCGTTCTCTACTCCCCCCGGCCCATATCCAG
Found at i:107490363 original size:20 final size:21
Alignment explanation
Indices: 107490323--107490372 Score: 93
Period size: 20 Copynumber: 2.4 Consensus size: 21
107490313 GGTTTTGTAT
107490323 TGTAAATTACTTTATTTTTTA
1 TGTAAATTACTTTATTTTTTA
107490344 TGTAAATTACTTTA-TTTTTA
1 TGTAAATTACTTTATTTTTTA
107490364 TGTAAATTA
1 TGTAAATTA
107490373 TTTTTTGCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.58
Consensus pattern (21 bp):
TGTAAATTACTTTATTTTTTA
Found at i:107493288 original size:14 final size:14
Alignment explanation
Indices: 107493255--107493289 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
107493245 TCTCACAATT
*
107493255 TTCAAAATTTTTGA
1 TTCAAAATTTTTCA
*
107493269 TGCAAAATTTTTCA
1 TTCAAAATTTTTCA
107493283 TTCAAAA
1 TTCAAAA
107493290 CCTAGCAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCAAAATTTTTCA
Found at i:107494939 original size:16 final size:17
Alignment explanation
Indices: 107494912--107494943 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
107494902 TAATTAACCA
107494912 AAAACAAAACAAAGAAG
1 AAAACAAAACAAAGAAG
107494929 AAAAC-AAACAAAGAA
1 AAAACAAAACAAAGAA
107494944 AAGAGAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.78, C:0.12, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAACAAAACAAAGAAG
Found at i:107494946 original size:21 final size:20
Alignment explanation
Indices: 107494913--107494951 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
107494903 AATTAACCAA
107494913 AAACAAAACAAAGAAGAAAAC
1 AAACAAAACAAAG-AGAAAAC
107494934 AAACAAAGA-AAAGAGAAA
1 AAACAAA-ACAAAGAGAAA
107494952 GGACCAGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 11 0.65
22 1 0.06
ACGTcount: A:0.77, C:0.10, G:0.13, T:0.00
Consensus pattern (20 bp):
AAACAAAACAAAGAGAAAAC
Found at i:107495079 original size:15 final size:16
Alignment explanation
Indices: 107495061--107495095 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
107495051 CGATTTTTTT
107495061 TAAAAAAT-ATAATAA
1 TAAAAAATAATAATAA
107495076 T-AAAAATAATAATAA
1 TAAAAAATAATAATAA
107495091 TAAAA
1 TAAAA
107495096 TATTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.33
15 9 0.50
16 3 0.17
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAAAATAATAATAA
Found at i:107495086 original size:12 final size:13
Alignment explanation
Indices: 107495064--107495122 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
107495054 TTTTTTTTAA
107495064 AAAATATAATAAT
1 AAAATATAATAAT
107495077 AAAAATAATAATAAT
1 -AAAAT-ATAATAAT
* *
107495092 AAAATAT-TTAAA
1 AAAATATAATAAT
* *
107495104 AAAATTTATTAAT
1 AAAATATAATAAT
107495117 AAAATA
1 AAAATA
107495123 ATATGTCGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
12 9 0.24
13 11 0.29
14 10 0.26
15 8 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATATAATAAT
Found at i:107495557 original size:31 final size:32
Alignment explanation
Indices: 107495491--107495557 Score: 77
Period size: 31 Copynumber: 2.1 Consensus size: 32
107495481 AAAAATAAAA
*
107495491 TTTTAAAATATAATATATTAAATATATTAATT
1 TTTTAAAATATAATATATTAAATATATTAACT
*
107495523 TTTTAAAA-ATACTATCA-TAAATATGA-TAACT
1 TTTTAAAATATAATAT-ATTAAATAT-ATTAACT
107495554 TTTT
1 TTTT
107495558 TTGTTATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 21 0.68
32 10 0.32
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.48
Consensus pattern (32 bp):
TTTTAAAATATAATATATTAAATATATTAACT
Found at i:107495751 original size:20 final size:20
Alignment explanation
Indices: 107495728--107495766 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
107495718 AAAATTAAAA
*
107495728 AATATATATAATTATTATTC
1 AATATATATAATTAATATTC
107495748 AATATATATAATTAATATT
1 AATATATATAATTAATATT
107495767 ATTTTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
AATATATATAATTAATATTC
Found at i:107495796 original size:22 final size:22
Alignment explanation
Indices: 107495732--107495796 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
107495722 TTAAAAAATA
* *
107495732 TATATAATTATTATTCA-ATA-
1 TATATAATTAATATTAATATAT
* *
107495752 TATATAATTAATATTATTTTAT
1 TATATAATTAATATTAATATAT
107495774 TATATAATATAATA-TAATATAT
1 TATATAAT-TAATATTAATATAT
107495796 T
1 T
107495797 CGTGCTGGAC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 14 0.39
21 2 0.06
22 15 0.42
23 5 0.14
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATAATTAATATTAATATAT
Found at i:107513446 original size:156 final size:155
Alignment explanation
Indices: 107513157--107513508 Score: 487
Period size: 156 Copynumber: 2.3 Consensus size: 155
107513147 CGCAAAAAAG
* * *
107513157 AAGCATTAGCGACGTTTTATT-AAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTGTCCAAA
1 AAGCATTAGCGGCGTTTT-TTCAAAAACGCCGCAATAGGTGACGCATTAACGACGGTTGTCCAAA
* *
107513221 AACGCTACAAAAGTGATGAGCAAAACGGTGCCGTTTGTTGGTGAGCTGTTGAGGCATTAGCGTCA
65 AACGCTACAAAAGTGATGAGCAAAACGGTGCCGTTTGTTGGTGAGCTGTTAAGGCATTAGCGGCA
*
107513286 TTTTTGGTAAAACGCCGCAACAA-ATTC
130 TTTTT-GTAAAACACCGCAA-AAGATTC
*
107513313 AAGCATTAGTGGCGTTTTTTCAAAAACGCCGCAATAGGTGACGCATTAACGACGGTT-TCCTAAA
1 AAGCATTAGCGGCGTTTTTTCAAAAACGCCGCAATAGGTGACGCATTAACGACGGTTGTCC-AAA
* * * * *
107513377 AACG-TCACCAAAGTGTTGAGCAAAATGGTGCCGTTTGTTTGTGAGGTGTTAAGGCATTAGCGGC
65 AACGCT-ACAAAAGTGATGAGCAAAACGGTGCCGTTTGTTGGTGAGCTGTTAAGGCATTAGCGGC
* * *
107513441 GTTTTTGTAAAATACCGCAAAAGGTTC
129 ATTTTTGTAAAACACCGCAAAAGATTC
*
107513468 AAGCATTAGCGGCGTTTTTACAAAAACGCCGCAATAGGTGA
1 AAGCATTAGCGGCGTTTTTTCAAAAACGCCGCAATAGGTGA
107513509 TGTATTAGCG
Statistics
Matches: 175, Mismatches: 17, Indels: 9
0.87 0.08 0.04
Matches are distributed among these distances:
154 2 0.01
155 60 0.34
156 113 0.65
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (155 bp):
AAGCATTAGCGGCGTTTTTTCAAAAACGCCGCAATAGGTGACGCATTAACGACGGTTGTCCAAAA
ACGCTACAAAAGTGATGAGCAAAACGGTGCCGTTTGTTGGTGAGCTGTTAAGGCATTAGCGGCAT
TTTTGTAAAACACCGCAAAAGATTC
Found at i:107513546 original size:155 final size:154
Alignment explanation
Indices: 107513157--107513565 Score: 466
Period size: 156 Copynumber: 2.6 Consensus size: 154
107513147 CGCAAAAAAG
* * * *
107513157 AAGCATTAGCGACG-TTTTATTAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTGTCCAAA
1 AAGCATTAGCGGCGTTTTTA-CAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTTCTAAA
* * * * *
107513221 AACGCTACAAAAGTGATGAGCAAAACGGTGCCGTTTGTTGGTGAGCTGTTGAGGCATTAGCGTCA
65 AACAC--CCAAAGTGTTGAGCAAAACGGTGCCGTTTGTTGGTGAGCTGTTAAGGCATTAGCGGCA
*
107513286 TTTTTGGTAAAACGCCGCAACAAATTC
128 TTTTTGGTAAAACACCGCAACAAATTC
* * * * *
107513313 AAGCATTAGTGGCGTTTTTTCAAAAACGCCGCAATAGGTGACGCATTAACGACGGTTTCCTAAAA
1 AAGCATTAGCGGCGTTTTTACAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTTCTAAAA
* * * * *
107513378 ACGTCACCAAAGTGTTGAGCAAAATGGTGCCGTTTGTTTGTGAGGTGTTAAGGCATTAGCGGCGT
66 AC-AC-CCAAAGTGTTGAGCAAAACGGTGCCGTTTGTTGGTGAGCTGTTAAGGCATTAGCGGCAT
* *
107513443 TTTT-GTAAAATACCGCAA-AAGGTTC
129 TTTTGGTAAAACACCGCAACAA-ATTC
* * **
107513468 AAGCATTAGCGGCGTTTTTACAAAAACGCCGCAATAGGTGATGTATTAGCGGCAATTTTCTAAAA
1 AAGCATTAGCGGCGTTTTTACAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTTCTAAAA
*
107513533 ACACCGCAGAAGTGTTGA-CTAAAACGGCGCCGT
66 ACACC-CA-AAGTGTTGAGC-AAAACGGTGCCGT
107513566 CCGTCAGTGA
Statistics
Matches: 214, Mismatches: 33, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
153 1 0.00
154 6 0.03
155 93 0.43
156 109 0.51
157 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (154 bp):
AAGCATTAGCGGCGTTTTTACAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTTCTAAAA
ACACCCAAAGTGTTGAGCAAAACGGTGCCGTTTGTTGGTGAGCTGTTAAGGCATTAGCGGCATTT
TTGGTAAAACACCGCAACAAATTC
Found at i:107513591 original size:155 final size:152
Alignment explanation
Indices: 107513157--107513658 Score: 463
Period size: 156 Copynumber: 3.2 Consensus size: 152
107513147 CGCAAAAAAG
* * * *
107513157 AAGCATTAGCGACG-TTTTATTAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTGTCCAAA
1 AAGCATTAGCGGCGTTTTTA-CAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTTCTAAA
* * * * * * * *
107513221 AACGCTACAAAAGTGATGAGCAAAACGGTGCCGTTTGTTGGTGAGCTGTTGAGGCATTAGCGTCA
65 AACAC--CCAAAGTGTTGAGCAAAACGGTGCCGTTTGTTAGTGAGCTATAGAGGCATTAGCGGCG
*
107513286 TTTTTGGTAAAACGCCGCAACAAATTC
128 TTTTT-GTAAAACGCCGCAA-AAGTTC
* * * * *
107513313 AAGCATTAGTGGCGTTTTTTCAAAAACGCCGCAATAGGTGACGCATTAACGACGGTTTCCTAAAA
1 AAGCATTAGCGGCGTTTTTACAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTTCTAAAA
* * * * *
107513378 ACGTCACCAAAGTGTTGAGCAAAATGGTGCCGTTTGTTTGTGAGGTGTTA-AGGCATTAGCGGCG
66 AC-AC-CCAAAGTGTTGAGCAAAACGGTGCCGTTTGTTAGTGAGCT-ATAGAGGCATTAGCGGCG
**
107513442 TTTTTGTAAAATACCGCAAAAGGTTC
128 TTTTTGTAAAACGCCGCAAAA-GTTC
* * **
107513468 AAGCATTAGCGGCGTTTTTACAAAAACGCCGCAATAGGTGATGTATTAGCGGCAATTTTCTAAAA
1 AAGCATTAGCGGCGTTTTTACAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTTCTAAAA
* ** * * *
107513533 ACACCGCAGAAGTGTTGA-CTAAAACGGCGCCGTCCGTCAGTGAGCTATAGAAGAATTAGCGGCG
66 ACACC-CA-AAGTGTTGAGC-AAAACGGTGCCGTTTGTTAGTGAGCTATAGAGGCATTAGCGGCG
* *
107513597 TTTGTTTTTAAAACGCCGCAAAA-TGTG
128 -TT-TTTGTAAAACGCCGCAAAAGT-TC
* * **
107513624 AATCATTAGTGGCGTTTTTTTAGAAAACGCCGCAA
1 AAGCATTAGCGGCGTTTTTACA-AAAACGCCGCAA
107513659 ATAAATTATG
Statistics
Matches: 284, Mismatches: 50, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
153 1 0.00
154 8 0.03
155 114 0.40
156 127 0.45
157 34 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (152 bp):
AAGCATTAGCGGCGTTTTTACAAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTTCTAAAA
ACACCCAAAGTGTTGAGCAAAACGGTGCCGTTTGTTAGTGAGCTATAGAGGCATTAGCGGCGTTT
TTGTAAAACGCCGCAAAAGTTC
Found at i:107513986 original size:19 final size:20
Alignment explanation
Indices: 107513942--107513986 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
107513932 TGTCCCTTGT
*
107513942 TATATATATATTAGAACTTG
1 TATATATATATTAGAACTTC
107513962 TA-ATATATATTA-AGA-TTC
1 TATATATATATTAGA-ACTTC
107513980 TATATAT
1 TATATAT
107513987 TAATTTAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 5 0.23
19 15 0.68
20 2 0.09
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (20 bp):
TATATATATATTAGAACTTC
Found at i:107514429 original size:15 final size:15
Alignment explanation
Indices: 107514409--107514440 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
107514399 TTTAATTTAG
107514409 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
107514424 AAGATAAATATATAT
1 AAGATAAATATAAAT
107514439 AA
1 AA
107514441 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:107514465 original size:2 final size:2
Alignment explanation
Indices: 107514458--107514489 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
107514448 TTTTAAAATA
107514458 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107514490 CAAAATGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107516997 original size:17 final size:19
Alignment explanation
Indices: 107516975--107517052 Score: 94
Period size: 19 Copynumber: 4.4 Consensus size: 19
107516965 ATGGAAATAT
107516975 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
107516992 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
107517011 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
107517028 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
107517046 AATCTTA
1 AATCTTA
107517053 GAAGATATGA
Statistics
Matches: 56, Mismatches: 1, Indels: 7
0.88 0.02 0.11
Matches are distributed among these distances:
17 22 0.39
18 9 0.16
19 25 0.45
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:107517007 original size:19 final size:19
Alignment explanation
Indices: 107516983--107517054 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
107516973 ATAATCTTCA
107516983 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
107517002 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
107517021 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
107517038 ATGAT-TGCAATCTTAGA
1 ATGATATGCAATCTTAGA
107517055 AGATATGATT
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.31
18 10 0.20
19 25 0.49
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:107517077 original size:23 final size:21
Alignment explanation
Indices: 107516983--107517064 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 21
107516973 ATAATCTTCA
107516983 ATGATATGCAATCTT---AGAT
1 ATGAT-TGCAATCTTAGAAGAT
107517002 ATGATATGCAATCTT---AGAT
1 ATGAT-TGCAATCTTAGAAGAT
*
107517021 ATGA-TACAATCTTAG---AT
1 ATGATTGCAATCTTAGAAGAT
107517038 ATGATTGCAATCTTAGAAGAT
1 ATGATTGCAATCTTAGAAGAT
107517059 ATGATT
1 ATGATT
107517065 TTGTAATCTT
Statistics
Matches: 55, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
17 14 0.25
18 10 0.18
19 23 0.42
21 8 0.15
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.37
Consensus pattern (21 bp):
ATGATTGCAATCTTAGAAGAT
Found at i:107518919 original size:46 final size:46
Alignment explanation
Indices: 107518866--107519041 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
107518856 TATTTGGGCA
107518866 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
107518912 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
107518957 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
107519005 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107519042 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:107519021 original size:93 final size:93
Alignment explanation
Indices: 107518862--107519033 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
107518852 GGGATATTTG
* *
107518862 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
107518927 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
107518955 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
107519020 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
107519034 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:107522023 original size:15 final size:15
Alignment explanation
Indices: 107521984--107522062 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
107521974 GTATCTTGGG
*
107521984 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
107521999 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
107522014 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
107522028 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
107522043 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
107522057 TTTCTT
1 TTTCTT
107522063 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:107522047 original size:29 final size:29
Alignment explanation
Indices: 107521975--107522061 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
107521965 CATAGTATCG
* * * *
107521975 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
107522005 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
107522034 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
107522062 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:107524497 original size:46 final size:46
Alignment explanation
Indices: 107524444--107524572 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
107524434 ATATTTGGCA
*
107524444 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
107524490 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
107524536 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
107524573 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:107529595 original size:26 final size:26
Alignment explanation
Indices: 107529566--107529673 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
107529556 TGGTACAAAT
107529566 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
** *
107529592 TGATAATGAATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
107529618 CGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
107529644 TGATAATGGTTTAGGTAAATGTTCCC
1 TGATAATGGGTTAGGTAAATGTTCCA
107529670 TGAT
1 TGAT
107529674 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:107531332 original size:27 final size:27
Alignment explanation
Indices: 107531294--107531407 Score: 151
Period size: 27 Copynumber: 4.2 Consensus size: 27
107531284 AGGAAGCGTC
107531294 CTGGTGGCTATGCCACAATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGTT
* *
107531321 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGTT
*
107531348 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGTT
* *
107531375 CTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTATGCCACAATTATCTGT-T
107531402 CTGGTG
1 CTGGTG
107531408 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
26 8 0.10
27 70 0.89
28 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGTT
Found at i:107535003 original size:8 final size:8
Alignment explanation
Indices: 107534990--107535018 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
107534980 TTATGTTTAG
107534990 TATATTAT
1 TATATTAT
107534998 TATATTAT
1 TATATTAT
107535006 TATATTAT
1 TATATTAT
107535014 TATAT
1 TATAT
107535019 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:107535051 original size:5 final size:5
Alignment explanation
Indices: 107535041--107535080 Score: 66
Period size: 5 Copynumber: 8.4 Consensus size: 5
107535031 TTATGTTTTA
107535041 ATTAT ATTAT ATTAT -TTAT ATTAT A-TAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
107535081 ATAAACTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 8 0.24
5 25 0.76
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:107535081 original size:14 final size:14
Alignment explanation
Indices: 107535041--107535083 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
107535031 TTATGTTTTA
107535041 ATTATATTATAT-T
1 ATTATATTATATAT
107535054 ATTTATATTATATAT
1 A-TTATATTATATAT
107535069 ATTATATTATATAT
1 ATTATATTATATAT
107535083 A
1 A
107535084 AACTAAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.04
14 25 0.89
15 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTATATTATATAT
Found at i:107535083 original size:9 final size:9
Alignment explanation
Indices: 107535041--107535083 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
107535031 TTATGTTTTA
107535041 ATTATATTAT
1 ATTATA-TAT
*
107535051 ATTATTTAT
1 ATTATATAT
107535060 ATTATATAT
1 ATTATATAT
107535069 ATTATAT-T
1 ATTATATAT
107535077 A-TATATA
1 ATTATATA
107535084 AACTAAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 5 0.17
8 2 0.07
9 18 0.60
10 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTATATAT
Found at i:107536373 original size:15 final size:15
Alignment explanation
Indices: 107536353--107536409 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
107536343 CGATGAATTT
107536353 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
107536368 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
107536383 ATTGAATTTATATTG
1 ATTGAATTTATATTG
107536398 ATTGAA-TTATAT
1 ATTGAATTTATAT
107536410 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:107536840 original size:21 final size:23
Alignment explanation
Indices: 107536781--107536846 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
107536771 GCTTTACTGA
107536781 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
107536804 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
107536826 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
107536847 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:107539068 original size:26 final size:26
Alignment explanation
Indices: 107539039--107539146 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
107539029 TGGTACAAAT
107539039 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
107539065 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
107539091 CGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
107539117 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
107539143 TGAT
1 TGAT
107539147 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:107540627 original size:27 final size:27
Alignment explanation
Indices: 107540589--107540726 Score: 174
Period size: 27 Copynumber: 5.1 Consensus size: 27
107540579 AAACGTCCTA
*
107540589 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
107540616 GTGGCTCTGCCAC-ATATATCTGTTCTG
1 GTGGCTCTGCCACAAT-TATCTGATCTG
* *
107540643 GTGGTTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
107540670 GTGGCTCTGCCAC-ATATATCTGTTCTG
1 GTGGCTCTGCCACAAT-TATCTGATCTG
*
107540697 GTGGCTCTGCCACAA-TATTTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTG
107540724 GTG
1 GTG
107540727 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
26 9 0.09
27 84 0.88
28 3 0.03
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:107540676 original size:54 final size:54
Alignment explanation
Indices: 107540589--107540726 Score: 233
Period size: 54 Copynumber: 2.6 Consensus size: 54
107540579 AAACGTCCTA
107540589 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
*
107540643 GTGGTTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
* *
107540697 GTGGCTCTGCCACAA-TATTTGTATCTGGTG
1 GTGGCTATGCCACAATTATCTG-ATCTGGTG
107540727 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.36
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
Found at i:107540738 original size:81 final size:80
Alignment explanation
Indices: 107540589--107540744 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 80
107540579 AAACGTCCTA
* *
107540589 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGTTATGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGCTTACGCC
107540654 ACAATTATCTGATCTG
66 ACAA-TATCTGATCTG
* * *
107540670 GTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATTTGTATCTGGTGACTT-C
1 GTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-TCTGGTG-CTTAC
*
107540732 GTCACAATATCTG
63 GCCACAATATCTG
107540745 GCAGCCTCGC
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
80 15 0.23
81 49 0.74
82 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (80 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGCTTACGCC
ACAATATCTGATCTG
Found at i:107542052 original size:99 final size:99
Alignment explanation
Indices: 107541946--107542373 Score: 491
Period size: 99 Copynumber: 4.1 Consensus size: 99
107541936 TTTTGTTCTC
*
107541946 TTTTATTTTATTTTCAA-ATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATT
1 TTTTATTTTATTTT-AACATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATT
* * *
107542010 TTATTTTTTTTGAGTCACGAAAAATAATTTTAATA
65 TCATTTTTTTTGAATCACGAAAAATAATTTCAATA
* ** * *
107542045 TTTTATTTTATTTTAAATATTTCATTTTATTTTAACATTACCTAATTA-AATTAAATCGTATTTA
1 TTTTATTTTATTTT-AACA-TT-A-CCTA-ATTAA-ATTA---AATTATATTTAAA--GT-TTT-
** *
107542109 AAGTTTTATTTTAAATATTTCATTTTTTTTGAATCACAAAAAATAATTTCAATA
53 -A-TTTTA-AAT----ATTTCATTTTTTTTGAATCACGAAAAATAATTTCAATA
**
107542163 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTT
107542228 CATTTTTTTTGAATCACGAAAAATAATTTCAATA
66 CATTTTTTTTGAATCACGAAAAATAATTTCAATA
* *
107542262 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATGT
1 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTT
**
107542327 CATTTAATTTGAATCACGAAAAATAATTTCAATA
66 CATTTTTTTTGAATCACGAAAAATAATTTCAATA
107542361 TTTTATTTTATTT
1 TTTTATTTTATTT
107542374 GATCACGAAA
Statistics
Matches: 282, Mismatches: 26, Indels: 42
0.81 0.07 0.12
Matches are distributed among these distances:
99 161 0.57
100 1 0.00
101 2 0.01
102 1 0.00
103 3 0.01
104 9 0.03
105 5 0.02
107 9 0.03
108 7 0.02
109 5 0.02
110 8 0.03
112 5 0.02
113 9 0.03
114 3 0.01
115 1 0.00
116 2 0.01
117 3 0.01
118 48 0.17
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (99 bp):
TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTT
CATTTTTTTTGAATCACGAAAAATAATTTCAATA
Found at i:107542065 original size:19 final size:19
Alignment explanation
Indices: 107542036--107542079 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
107542026 ACGAAAAATA
*
107542036 ATTTT-AATATTTTATTTT
1 ATTTTAAATATTTCATTTT
107542054 ATTTTAAATATTTCATTTT
1 ATTTTAAATATTTCATTTT
107542073 ATTTTAA
1 ATTTTAA
107542080 CATTACCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
ATTTTAAATATTTCATTTT
Found at i:107542085 original size:118 final size:118
Alignment explanation
Indices: 107541950--107542178 Score: 379
Period size: 118 Copynumber: 1.9 Consensus size: 118
107541940 GTTCTCTTTT
* *
107541950 ATTTTATTTTCAAATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATT
1 ATTTTATTTTCAAATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTTCATT
* * *
107542015 TTTTTTGAGTCACGAAAAATAATTTTAATATTTTATTTTATTTTAAATATTTC
66 TTTTTTGAATCACAAAAAATAATTTCAATATTTTATTTTATTTTAAATATTTC
* *
107542068 ATTTTATTTT-AACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTTCAT
1 ATTTTATTTTCAA-ATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTTCAT
107542132 TTTTTTTGAATCACAAAAAATAATTTCAATATTTTATTTTATTTTAA
65 TTTTTTTGAATCACAAAAAATAATTTCAATATTTTATTTTATTTTAA
107542179 CATTACCTAA
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
117 2 0.02
118 101 0.98
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (118 bp):
ATTTTATTTTCAAATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTTCATT
TTTTTTGAATCACAAAAAATAATTTCAATATTTTATTTTATTTTAAATATTTC
Found at i:107542126 original size:62 final size:58
Alignment explanation
Indices: 107541950--107542138 Score: 177
Period size: 62 Copynumber: 3.2 Consensus size: 58
107541940 GTTCTCTTTT
* *
107541950 ATTTTATTTTCAAATTACCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTT
1 ATTTT-TTTT-AAATTACCTAATTAAATTAAA-T-TATTTAAAGTTTTATTTTAAATATTTC
* * * ** * * * *
107542012 ATTTTTTTTGAGTCACGAAAAATAATTTTAA-TATTT-TA-TTTTATTTTAAATATTTC
1 ATTTTTTTTAAATTAC-CTAATTAAATTAAATTATTTAAAGTTTTATTTTAAATATTTC
107542068 ATTTTATTTTAACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTTC
1 ATTTT-TTTTAA-ATTACCTAATTAAATTAAAT--TATTTAAAGTTTTATTTTAAATATTTC
107542130 ATTTTTTTT
1 ATTTTTTTT
107542139 GAATCACAAA
Statistics
Matches: 99, Mismatches: 20, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
56 21 0.21
57 15 0.15
58 8 0.08
60 9 0.09
61 18 0.18
62 28 0.28
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (58 bp):
ATTTTTTTTAAATTACCTAATTAAATTAAATTATTTAAAGTTTTATTTTAAATATTTC
Found at i:107542464 original size:9 final size:9
Alignment explanation
Indices: 107542450--107542599 Score: 91
Period size: 9 Copynumber: 16.7 Consensus size: 9
107542440 TTTCCAACTC
107542450 ACATAATTT
1 ACATAATTT
107542459 ACATAA--T
1 ACATAATTT
*
107542466 ACATAACTT
1 ACATAATTT
107542475 ACATAATTT
1 ACATAATTT
*
107542484 AAAGTTCGAATTT
1 ACA--T--AATTT
*
107542497 -CATAACTT
1 ACATAATTT
107542505 ACATAATTT
1 ACATAATTT
*
107542514 ACATAACTT
1 ACATAATTT
107542523 ACATAA--T
1 ACATAATTT
*
107542530 ACATAACTT
1 ACATAATTT
107542539 ACATAA--T
1 ACATAATTT
* *
107542546 ACATGACTT
1 ACATAATTT
107542555 ACATAATTT
1 ACATAATTT
*
107542564 AAAGATCAAATTT
1 --ACAT--AATTT
*
107542577 -CATAACTT
1 ACATAATTT
107542585 ACATAATTT
1 ACATAATTT
107542594 ACATAA
1 ACATAA
107542600 AATTAACACA
Statistics
Matches: 112, Mismatches: 13, Indels: 32
0.71 0.08 0.20
Matches are distributed among these distances:
7 20 0.18
8 8 0.07
9 66 0.59
10 3 0.03
11 4 0.04
12 1 0.01
13 10 0.09
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (9 bp):
ACATAATTT
Found at i:107542471 original size:16 final size:16
Alignment explanation
Indices: 107542450--107542561 Score: 113
Period size: 16 Copynumber: 7.0 Consensus size: 16
107542440 TTTCCAACTC
*
107542450 ACATAATTTACATAAT
1 ACATAACTTACATAAT
107542466 ACATAACTTACATAAT
1 ACATAACTTACATAAT
** * *
107542482 TTA-AAGTT-CGA-ATT
1 ACATAACTTAC-ATAAT
*
107542496 TCATAACTTACATAATTT
1 ACATAACTTACATAA--T
107542514 ACATAACTTACATAAT
1 ACATAACTTACATAAT
107542530 ACATAACTTACATAAT
1 ACATAACTTACATAAT
*
107542546 ACATGACTTACATAAT
1 ACATAACTTACATAAT
107542562 TTAAAGATCA
Statistics
Matches: 80, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
14 5 0.06
15 10 0.12
16 50 0.62
18 15 0.19
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.36
Consensus pattern (16 bp):
ACATAACTTACATAAT
Found at i:107542473 original size:25 final size:26
Alignment explanation
Indices: 107542445--107542599 Score: 138
Period size: 25 Copynumber: 5.8 Consensus size: 26
107542435 TTTATTTTCC
*
107542445 AACTCACATAATTTACATAA-TACAT
1 AACTTACATAATTTACATAATTACAT
* *
107542470 AACTTACATAATTTAAAGTTCGAATTTCAT
1 AACTTACATAATTTACA--T--AATTACAT
107542500 AACTTACATAATTTACATAACTTACAT
1 AACTTACATAATTTACATAA-TTACAT
*
107542527 AA--TACATAACTTACATAA-TACAT
1 AACTTACATAATTTACATAATTACAT
* * *
107542550 GACTTACATAATTTAAAGATCAAATTTCAT
1 AACTTACATAATTT--ACAT--AATTACAT
107542580 AACTTACATAATTTACATAA
1 AACTTACATAATTTACATAA
107542600 AATTAACACA
Statistics
Matches: 105, Mismatches: 12, Indels: 25
0.74 0.08 0.18
Matches are distributed among these distances:
23 6 0.06
25 39 0.37
26 4 0.04
27 11 0.10
28 4 0.04
29 4 0.04
30 37 0.35
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (26 bp):
AACTTACATAATTTACATAATTACAT
Found at i:107542548 original size:80 final size:80
Alignment explanation
Indices: 107542450--107542599 Score: 264
Period size: 80 Copynumber: 1.9 Consensus size: 80
107542440 TTTCCAACTC
* * *
107542450 ACATAATTTACATAATACATAACTTACATAATTTAAAGTTCGAATTTCATAACTTACATAATTTA
1 ACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATTTA
107542515 CATAACTTACATAAT
66 CATAACTTACATAAT
*
107542530 ACATAACTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATTTA
1 ACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATTTA
107542595 CATAA
66 CATAA
107542600 AATTAACACA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (80 bp):
ACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATTTA
CATAACTTACATAAT
Found at i:107542746 original size:9 final size:9
Alignment explanation
Indices: 107542732--107542803 Score: 69
Period size: 9 Copynumber: 8.2 Consensus size: 9
107542722 TCGTACATAA
107542732 TACATAACT
1 TACATAACT
*
107542741 TACATAATT
1 TACATAACT
107542750 TACATAACT
1 TACATAACT
107542759 TACATAA--
1 TACATAACT
*
107542766 TACATAA-A
1 TACATAACT
* * *
107542774 TATATATCA
1 TACATAACT
107542783 TATCATAACT
1 TA-CATAACT
107542793 TACATAACT
1 TACATAACT
107542802 TA
1 TA
107542804 ATTATATTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
7 7 0.13
8 5 0.09
9 35 0.66
10 6 0.11
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (9 bp):
TACATAACT
Found at i:107542763 original size:34 final size:34
Alignment explanation
Indices: 107542725--107542799 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
107542715 CTTTATGTCG
* *
107542725 TACATAATACATAACT-TACATAATTTACATAACT
1 TACATAATACATAAATATACATAATAT-CATAACT
* *
107542759 TACATAATACATAAATATATATCATATCATAACT
1 TACATAATACATAAATATACATAATATCATAACT
107542793 TACATAA
1 TACATAA
107542800 CTTAATTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (34 bp):
TACATAATACATAAATATACATAATATCATAACT
Found at i:107549035 original size:65 final size:65
Alignment explanation
Indices: 107548931--107549113 Score: 339
Period size: 65 Copynumber: 2.8 Consensus size: 65
107548921 ATCACATTTA
*
107548931 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCGCTTGTCGCTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCGCTTGTCGCTTG
107548996 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCGCTTGTCGCTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCGCTTGTCGCTTG
* *
107549061 TCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTGTC
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTC
107549114 ACTGATTAGA
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 115 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (65 bp):
TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCGCTTGTCGCTTG
Found at i:107551621 original size:31 final size:31
Alignment explanation
Indices: 107551584--107551654 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
107551574 TTATTTTATT
* *
107551584 TTTCATGCTACATTTGCTGTTTTTGGATGGA
1 TTTCATGCAACATTTACTGTTTTTGGATGGA
* *
107551615 TTTCATGCAATATTTACTGTTTTTGGTTGGA
1 TTTCATGCAACATTTACTGTTTTTGGATGGA
*
107551646 TTTAATGCA
1 TTTCATGCA
107551655 GGAAGGGTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.20, C:0.11, G:0.20, T:0.49
Consensus pattern (31 bp):
TTTCATGCAACATTTACTGTTTTTGGATGGA
Found at i:107554312 original size:42 final size:42
Alignment explanation
Indices: 107554223--107554315 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
107554213 AGAATCGACG
* * *
107554223 CTAAAGAACATGACCTTTAGCGGCACTTTCCCTCGAAACGCCG
1 CTAAAG-ACATGACCTTTAGCGACACTTTCCCTCAAAACGCCA
* * *
107554266 CTAAAGACATGATCTTTAGCGACGCTTTCCC-CAAAAATGCCA
1 CTAAAGACATGACCTTTAGCGACACTTTCCCTC-AAAACGCCA
107554308 CTAAAGAC
1 CTAAAGAC
107554316 CATATCAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
41 1 0.02
42 36 0.84
43 6 0.14
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (42 bp):
CTAAAGACATGACCTTTAGCGACACTTTCCCTCAAAACGCCA
Found at i:107556409 original size:30 final size:30
Alignment explanation
Indices: 107556325--107556412 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
107556315 AAAATTAAAT
* **
107556325 ATAAATTTTAATTTAATATGTATTTTCATAC
1 ATAAAATTTAATTTAAT-TCAATTTTCATAC
* *
107556356 ATAAAATTTAATTT-TTTATAATTTT-ATAC
1 ATAAAATTTAATTTAATT-CAATTTTCATAC
107556385 ATAAAATTTAAATTTAATTCAATTTTCA
1 ATAAAATTT-AATTTAATTCAATTTTCA
107556413 CAAATCACTA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
29 14 0.30
30 17 0.36
31 16 0.34
ACGTcount: A:0.42, C:0.06, G:0.01, T:0.51
Consensus pattern (30 bp):
ATAAAATTTAATTTAATTCAATTTTCATAC
Found at i:107558646 original size:40 final size:41
Alignment explanation
Indices: 107558517--107558700 Score: 255
Period size: 40 Copynumber: 4.5 Consensus size: 41
107558507 GACGTTTATC
* *
107558517 CTATTGCTTTACCTTTTGTGGCGTTTATGAGAAAAACGCCG
1 CTATTGCTTTACCTTTTGCGGCGTTTATGACAAAAACGCCG
* * * * **
107558558 CTATTGCTTTACCTTCTGCAGCATTTATGAGAAAAACGCTA
1 CTATTGCTTTACCTTTTGCGGCGTTTATGACAAAAACGCCG
*
107558599 CTGTTGCTTTACCTTTTGCGGCGTTTATG-CAAAAACGCCG
1 CTATTGCTTTACCTTTTGCGGCGTTTATGACAAAAACGCCG
*
107558639 CTATTGCTTTACCTTTTGCAGCGTTTAT-ACAAAAACGCCG
1 CTATTGCTTTACCTTTTGCGGCGTTTATGACAAAAACGCCG
*
107558679 CTAATGCTTTACCTTTTGCGGC
1 CTATTGCTTTACCTTTTGCGGC
107558701 ATTTTCGATC
Statistics
Matches: 125, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 65 0.52
41 60 0.48
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (41 bp):
CTATTGCTTTACCTTTTGCGGCGTTTATGACAAAAACGCCG
Found at i:107558659 original size:81 final size:81
Alignment explanation
Indices: 107558517--107558700 Score: 271
Period size: 81 Copynumber: 2.3 Consensus size: 81
107558507 GACGTTTATC
* *
107558517 CTATTGCTTTACCTTTTGTGGCGTTTATGAGAAAAACGCCGCTATTGCTTTACCTTCTGCAGCAT
1 CTATTGCTTTACCTTTTGCGGCGTTTATGACAAAAACGCCGCTATTGCTTTACCTTCTGCAGCAT
* *
107558582 TTATGAGAAAAACGCTA
66 TTAT-ACAAAAACGCCA
* * *
107558599 CTGTTGCTTTACCTTTTGCGGCGTTTATG-CAAAAACGCCGCTATTGCTTTACCTTTTGCAGCGT
1 CTATTGCTTTACCTTTTGCGGCGTTTATGACAAAAACGCCGCTATTGCTTTACCTTCTGCAGCAT
*
107558663 TTATACAAAAACGCCG
66 TTATACAAAAACGCCA
*
107558679 CTAATGCTTTACCTTTTGCGGC
1 CTATTGCTTTACCTTTTGCGGC
107558701 ATTTTCGATC
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 29 0.32
81 36 0.39
82 27 0.29
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.36
Consensus pattern (81 bp):
CTATTGCTTTACCTTTTGCGGCGTTTATGACAAAAACGCCGCTATTGCTTTACCTTCTGCAGCAT
TTATACAAAAACGCCA
Found at i:107559205 original size:21 final size:23
Alignment explanation
Indices: 107559164--107559230 Score: 81
Period size: 21 Copynumber: 3.1 Consensus size: 23
107559154 CAGAAAAGTC
*
107559164 CTCTCATAATTCTCTCTAAATTCT
1 CTCTCATATTTCTCTC-AAATTCT
107559188 CTC-CA-ATTTCTCTCAAATT-T
1 CTCTCATATTTCTCTCAAATTCT
107559208 CTCTCATATTT-TCTCAAA-TCT
1 CTCTCATATTTCTCTCAAATTCT
107559229 CT
1 CT
107559231 TTTTAATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
20 5 0.13
21 17 0.44
22 12 0.31
23 2 0.05
24 3 0.08
ACGTcount: A:0.24, C:0.30, G:0.00, T:0.46
Consensus pattern (23 bp):
CTCTCATATTTCTCTCAAATTCT
Found at i:107559212 original size:11 final size:11
Alignment explanation
Indices: 107559164--107559226 Score: 69
Period size: 11 Copynumber: 5.8 Consensus size: 11
107559154 CAGAAAAGTC
107559164 CTCTCATAA-TT
1 CTCTCA-AATTT
107559175 CTCTCTAAA-TT
1 CTCTC-AAATTT
*
107559186 CTCTCCAATTT
1 CTCTCAAATTT
107559197 CTCTCAAATTT
1 CTCTCAAATTT
*
107559208 CTCTCATATTT
1 CTCTCAAATTT
107559219 -TCTCAAAT
1 CTCTCAAAT
107559227 CTCTTTTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
10 9 0.20
11 36 0.78
12 1 0.02
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCTCAAATTT
Found at i:107560947 original size:30 final size:30
Alignment explanation
Indices: 107560906--107560964 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
107560896 GACGATGCGG
* *
107560906 GCCCATTAACAATGCCCACAAAATCATCGA
1 GCCCATCAACAACGCCCACAAAATCATCGA
* *
107560936 GCCCATCAACAACGCCCACAGAGTCATCG
1 GCCCATCAACAACGCCCACAAAATCATCG
107560965 GGCACAACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.37, G:0.14, T:0.14
Consensus pattern (30 bp):
GCCCATCAACAACGCCCACAAAATCATCGA
Found at i:107561066 original size:18 final size:18
Alignment explanation
Indices: 107561026--107561060 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
107561016 CCAGGTGCGT
107561026 ATCCTAACCCTTATATGA
1 ATCCTAACCCTTATATGA
107561044 ATCCTAACCCTTATATG
1 ATCCTAACCCTTATATG
107561061 TTTCCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (18 bp):
ATCCTAACCCTTATATGA
Found at i:107564876 original size:124 final size:126
Alignment explanation
Indices: 107564643--107565196 Score: 706
Period size: 124 Copynumber: 4.4 Consensus size: 126
107564633 CCAAATAGGA
* * * *
107564643 ACTACTATAGCAAAAGAGTGTCCACGTAGG-AGCTTTTTTCAGTAATTTTGCTGACAGTGTATCC
1 ACTACTGTAGCAAAAGAGCGTCCACGT-GGAAGCTTTTTTCAGTAATTTTGCTGACAATGCATCC
* *
107564707 TGCTTAAAGTGTTTTGGACACTATTTGTTCAAAAACGCCTTCTCAAAATTA-TTTTTCAGAT
65 TGCTTGAAGTGTTTTGGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * *
107564768 ACTACTGTAGCAAAAGAGCATCCACGCGGAAGCTTTTTTCAGTAATTTTGTTGACAATG-ATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAATGCATCCT
* *
107564832 ACTTGAAGTGTTTTGGACACTGTTTGTTCAAAAACGTCTTCTCAAAATTA-TTTTTCAGAT
66 GCTTGAAGTGTTTTGGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * * * * *
107564892 ACTATTGTAGTAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGTTGATAGTGCATCTT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAATGCATCCT
* * * *
107564957 GCTTGAAGTGTTTTGGACACTATTTGTTTAAAAACATCTTCTTAAAATTATTTTTTTCATAT
66 GCTTGAAGTGTTTTGGACACTATTTGTTCAAAAACGTCTTCTCAAAATTA-TTTTTTCAGAT
* * * * *
107565019 ACTACTGTAGAAAAAGAGTGTCCACGT-GAGAGCTTTTTTCGGCAATTTTGCTGACAATGCATCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGA-AGCTTTTTTCAGTAATTTTGCTGACAATGCATCC
* * * *
107565083 TGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAACG-CTTTCTCAAAATTATTTTTTCAGAT
65 TGCTTGAAGTGTTTTGGACACTATTTGTTCAAAAACGTC-TTCTCAAAATTATTTTTTCAGAT
* * * * *
107565145 ACTACTGTAGCAAAAAAACATCCACGTGGAAGTTTTTTTTAGTAATTTTGCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCT
107565197 AATAGTGCAT
Statistics
Matches: 374, Mismatches: 48, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
124 115 0.31
125 99 0.26
126 52 0.14
127 108 0.29
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.38
Consensus pattern (126 bp):
ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAATGCATCCT
GCTTGAAGTGTTTTGGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAGAT
Found at i:107565244 original size:16 final size:16
Alignment explanation
Indices: 107565223--107565307 Score: 54
Period size: 16 Copynumber: 5.5 Consensus size: 16
107565213 TTAATTAATT
*
107565223 AACCCTAAAAATCCTA
1 AACCCTAAAAACCCTA
* *
107565239 AACCCT-AAAATCATA
1 AACCCTAAAAACCCTA
* *
107565254 AGCAC-AATAAACCCTAA
1 AACCCTAA-AAACCCT-A
107565271 AACCCT-AAAACCCT-
1 AACCCTAAAAACCCTA
*
107565285 AACCCT-AAAACCATA
1 AACCCTAAAAACCCTA
*
107565300 AACTCTAA
1 AACCCTAA
107565308 TTTAATTAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
14 13 0.24
15 17 0.31
16 19 0.35
17 5 0.09
ACGTcount: A:0.51, C:0.32, G:0.01, T:0.16
Consensus pattern (16 bp):
AACCCTAAAAACCCTA
Found at i:107565250 original size:15 final size:15
Alignment explanation
Indices: 107565223--107565307 Score: 64
Period size: 15 Copynumber: 5.5 Consensus size: 15
107565213 TTAATTAATT
*
107565223 AACCCTAAAAATCCTA
1 AACCCT-AAAACCCTA
* *
107565239 AACCCTAAAATCATA
1 AACCCTAAAACCCTA
* * *
107565254 AGCACAATAAACCCTAA
1 AACCCTA-AAACCCT-A
107565271 AACCCTAAAACCCT-
1 AACCCTAAAACCCTA
*
107565285 AACCCTAAAACCATA
1 AACCCTAAAACCCTA
*
107565300 AACTCTAA
1 AACCCTAA
107565308 TTTAATTAAT
Statistics
Matches: 55, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
14 13 0.24
15 19 0.35
16 18 0.33
17 5 0.09
ACGTcount: A:0.51, C:0.32, G:0.01, T:0.16
Consensus pattern (15 bp):
AACCCTAAAACCCTA
Found at i:107565275 original size:8 final size:8
Alignment explanation
Indices: 107565262--107565301 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
107565252 TAAGCACAAT
107565262 AAACCCTA
1 AAACCCTA
107565270 AAACCCTA
1 AAACCCTA
107565278 AAACCCT-
1 AAACCCTA
107565285 -AACCCTA
1 AAACCCTA
*
107565292 AAACCATA
1 AAACCCTA
107565300 AA
1 AA
107565302 CTCTAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 6 0.21
8 23 0.79
ACGTcount: A:0.53, C:0.35, G:0.00, T:0.12
Consensus pattern (8 bp):
AAACCCTA
Found at i:107565343 original size:35 final size:34
Alignment explanation
Indices: 107565284--107565351 Score: 109
Period size: 35 Copynumber: 2.0 Consensus size: 34
107565274 CCTAAAACCC
107565284 TAACCCTAAAACCATAAACTCTAATTTAATTAAT
1 TAACCCTAAAACCATAAACTCTAATTTAATTAAT
* *
107565318 TAACCTTAAAACTCCTAAACTCTAATTTAATTAA
1 TAACCCTAAAAC-CATAAACTCTAATTTAATTAA
107565352 CACTAAAACC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 11 0.35
35 20 0.65
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.34
Consensus pattern (34 bp):
TAACCCTAAAACCATAAACTCTAATTTAATTAAT
Found at i:107565396 original size:111 final size:114
Alignment explanation
Indices: 107565243--107565466 Score: 285
Period size: 118 Copynumber: 2.0 Consensus size: 114
107565233 ATCCTAAACC
* * * *
107565243 CTAAAATCATAAGCACAATAAACCCTAAAACCCTAAAACCCTAA-C-CC-TAAAACCATAAACTC
1 CTAAAACCATAAACACAATAAAACCTAAAACCCTAAAACCCTAACCACCTTAAAACCATAAACCC
*
107565305 TAATTTAATTAATTAACCTT-AAAACTCCTAAACTCTAATTTAATTAACA
66 TAATTTAATTAATTAACCTTAAAAAC-CCTAAACCCTAATTTAATTAACA
* * * *
107565354 CTAAAACCATAAACACGATAAAACTTTAAACCCTAAATCCCTAACCCTAAACCTTAAAACCATAA
1 CTAAAACCATAAACACAATAAAACCTAAAACCCTAAAACCCTAA-CC---ACCTTAAAACCATAA
*
107565419 ACCCTAATTTAATTAATTAACCTTAAAAACCTTAAACCCTAATTTAAT
62 ACCCTAATTTAATTAATTAACCTTAAAAACCCTAAACCCTAATTTAAT
107565467 CGATTTTTTA
Statistics
Matches: 95, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
111 37 0.39
113 1 0.01
117 2 0.02
118 50 0.53
119 5 0.05
ACGTcount: A:0.47, C:0.25, G:0.01, T:0.26
Consensus pattern (114 bp):
CTAAAACCATAAACACAATAAAACCTAAAACCCTAAAACCCTAACCACCTTAAAACCATAAACCC
TAATTTAATTAATTAACCTTAAAAACCCTAAACCCTAATTTAATTAACA
Found at i:107565406 original size:21 final size:22
Alignment explanation
Indices: 107565380--107565425 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
107565370 GATAAAACTT
* *
107565380 TAAACCCTAAATCCCT-AACCC
1 TAAACCCTAAAACCATAAACCC
*
107565401 TAAACCTTAAAACCATAAACCC
1 TAAACCCTAAAACCATAAACCC
107565423 TAA
1 TAA
107565426 TTTAATTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.20
Consensus pattern (22 bp):
TAAACCCTAAAACCATAAACCC
Found at i:107566743 original size:22 final size:22
Alignment explanation
Indices: 107566691--107566743 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
107566681 TCTATTTTGG
*
107566691 TACTTAAACTTTTTAAAATTAA
1 TACTTAAATTTTTTAAAATTAA
* * * *
107566713 TA-TTTAATTTTTTTAGATTGA
1 TACTTAAATTTTTTAAAATTAA
107566734 TACTTAAATT
1 TACTTAAATT
107566744 ATCATTCTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.53
Consensus pattern (22 bp):
TACTTAAATTTTTTAAAATTAA
Found at i:107572565 original size:20 final size:20
Alignment explanation
Indices: 107572542--107572585 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
107572532 AGCTCCAACT
*
107572542 AGCTCACTTGAGCTTGTTTC
1 AGCTCACTTGAGCTCGTTTC
** *
107572562 AGCTCGTTTGAGCTCGTTTT
1 AGCTCACTTGAGCTCGTTTC
107572582 AGCT
1 AGCT
107572586 TCTTTACAGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.41
Consensus pattern (20 bp):
AGCTCACTTGAGCTCGTTTC
Found at i:107588318 original size:108 final size:108
Alignment explanation
Indices: 107588123--107588340 Score: 305
Period size: 108 Copynumber: 2.0 Consensus size: 108
107588113 TGCCGAAATG
* *
107588123 AGAAAGGTGCATATTGGCCAATTATTTCTAACCTTCCTCGTGTGAGGATAAATTATGTTGACATC
1 AGAAAGGTGCATATTGGCCAATTATTTCTAACCTTCCTC-AGTAAGGATAAATTATGTTGACATC
* * *
107588188 CGCTGAACAAGAACAAGCAGATTGCATTTCTAGATGGATAGCAA
65 CGCTGAAAAAGAACAAGCAGATTGCATTCCTAGATGGACAGCAA
* *
107588232 AGAAAGGTGCATATTGGCCTATTATTTCTCACCTTCACT-AGTAAGGAT-AATTCATGTTGACAT
1 AGAAAGGTGCATATTGGCCAATTATTTCTAACCTTC-CTCAGTAAGGATAAATT-ATGTTGACAT
** *
107588295 CTTCTGAAAAAGCACAAGCAGATTGCATTCCTAGATGGACAGCAA
64 CCGCTGAAAAAGAACAAGCAGATTGCATTCCTAGATGGACAGCAA
107588340 A
1 A
107588341 AACTAATTGC
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
107 4 0.04
108 57 0.59
109 34 0.35
110 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (108 bp):
AGAAAGGTGCATATTGGCCAATTATTTCTAACCTTCCTCAGTAAGGATAAATTATGTTGACATCC
GCTGAAAAAGAACAAGCAGATTGCATTCCTAGATGGACAGCAA
Found at i:107592963 original size:129 final size:131
Alignment explanation
Indices: 107592797--107593082 Score: 298
Period size: 131 Copynumber: 2.2 Consensus size: 131
107592787 TGAAAAAATA
* * * *
107592797 CAACCTAGCACGATAGGGCACGATTCTCAAATCGTCAAACATCGAACA-T-CCTTTGTTTTGAAA
1 CAACCCAGCACGTTAGGGCACGATTCTCAAATCGTCAAACACCGAACATTGCCTTCGTTTT-AAA
* * *
107592860 GG-TTTTTA-ATA-AACATGAGTGAAA-ACCTAAAGGAATATTCGACTGTTTTGAGCAAACGAGA
65 GGATTTTTAGA-AGAACA-GAATGAAATACCGAAAGG-ATATTCGACTATTTTGAGCAAACGAGA
107592921 AATTG
127 AATTG
* * * * *
107592926 CAACCCAGCACGTTAGGGCACGATTC-CGGAATTGTCAAACGCCGAATATTGCCTTCGTTTTAGA
1 CAACCCAGCACGTTAGGGCACGATTCTC-AAATCGTCAAACACCGAACATTGCCTTCGTTTTAAA
* ** * * * *
107592990 GGATTTTTAGAAGACCAGAATGAAATTTCGAATGGGTATTTGATTATTTTGAGCAAACGAGAAAT
65 GGATTTTTAGAAGAACAGAATGAAATACCGAAAGGATATTCGACTATTTTGAGCAAACGAGAAAT
107593055 TG
130 TG
*
107593057 CAACCCAACACGTTAGGGCACGATTC
1 CAACCCAGCACGTTAGGGCACGATTC
107593083 AGCGGCCAGA
Statistics
Matches: 130, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
128 1 0.01
129 39 0.30
130 5 0.04
131 76 0.58
132 9 0.07
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (131 bp):
CAACCCAGCACGTTAGGGCACGATTCTCAAATCGTCAAACACCGAACATTGCCTTCGTTTTAAAG
GATTTTTAGAAGAACAGAATGAAATACCGAAAGGATATTCGACTATTTTGAGCAAACGAGAAATT
G
Found at i:107596072 original size:131 final size:131
Alignment explanation
Indices: 107595893--107596278 Score: 415
Period size: 132 Copynumber: 3.0 Consensus size: 131
107595883 TTTTAATAAA
* * * * *
107595893 CATGAGTGAAAATTTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAATTGCAACCCAGCACG
1 CATGAATGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCA-CACG
* * * * * *
107595958 TTAGGGCACGA-TTCCCGAATTATCAAACGCCGAA-TATTGCCTTCGTTTTAGAGGATTTTTAGA
65 TTAGGGCACGATTTCCCGAATTACCAAACACCAAACT-TTGCCTTCGTTTTAAAGAATTTTTAAA
107596021 AGAC
129 AG-C
* * *
107596025 CA-GAATGAAATTTTGAAGGGGTATTTGATTATTTTGAGCAAACGAGAAATTGTAACCCAACACG
1 CATGAATGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCC-ACACG
* * * *
107596089 TTAGGGCACGATTTCGCGAATTGCCAAATATCAAACTTTGCCTTCGTTTTAAAGAATTTTTAAAA
65 TTAGGGCACGATTTCCCGAATTACCAAACACCAAACTTTGCCTTCGTTTTAAAGAATTTTTAAAA
*
107596154 GG
130 GC
* * *
107596156 CATGAGTGAAATTTTGAAGGGATATTCGATCATTTTGAGCAAACGCGAAATTGCAA--CACACGT
1 CATGAATGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCACACGT
* * * * * * * *
107596219 TAGGGCACTATTTCACGAATTGCCAAATATCGAA-TCTCGTCTTCGTTTTAAAGAATTTTT
66 TAGGGCACGATTTCCCGAATTACCAAACACCAAACT-TTGCCTTCGTTTTAAAGAATTTTT
107596279 GAATGATTGA
Statistics
Matches: 219, Mismatches: 30, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
128 1 0.00
129 59 0.27
130 1 0.00
131 65 0.30
132 92 0.42
133 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (131 bp):
CATGAATGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCACACGT
TAGGGCACGATTTCCCGAATTACCAAACACCAAACTTTGCCTTCGTTTTAAAGAATTTTTAAAAG
C
Found at i:107596191 original size:132 final size:133
Alignment explanation
Indices: 107595772--107596278 Score: 484
Period size: 129 Copynumber: 3.9 Consensus size: 133
107595762 AATGTGAATA
* * ** * * * * * * *
107595772 AAATTTTGAAGGGATCTTCGATTGTTTAAAACCAATGAAAAAATGCAACCCAGCACGATAGGGCA
1 AAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCA
* * * * * *
107595837 CGATTCTCA--AATTGTCAAACATTGAACA-T-CCTTTGTTTTGAAAG-GTTTTTAATAA-A-CA
66 CGATT-TCACGAATTGCCAAATATCGAATATTGCCTTCGTTTT-AAAGAATTTTTAA-AAGACCA
107595895 TGAGTG
128 TGAGTG
* * * * *
107595901 AAAATTTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCA
1 AAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCA
* ** *** * * *
107595966 CGA-TTCCCGAATTATCAAACGCCGAATATTGCCTTCGTTTTAGAGGATTTTTAGAAGACCA-GA
66 CGATTTCACGAATTGCCAAATATCGAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACCATGA
*
107596029 ATG
131 GTG
* * *
107596032 AAATTTTGAAGGGGTATTTGATTATTTTGAGCAAACGAGAAATTGTAACCCAACACGTTAGGGCA
1 AAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCA
* * *
107596097 CGATTTCGCGAATTGCCAAATATCAAACT-TTGCCTTCGTTTTAAAGAATTTTTAAAAG-GCATG
66 CGATTTCACGAATTGCCAAATATCGAA-TATTGCCTTCGTTTTAAAGAATTTTTAAAAGACCATG
107596160 AGTG
130 AGTG
* *
107596164 AAATTTTGAAGGGATATTCGATCATTTTGAGCAAACGCGAAATTGCAA--C-ACACGTTAGGGCA
1 AAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCA
* * * *
107596226 CTATTTCACGAATTGCCAAATATCGAATCTCGTCTTCGTTTTAAAGAATTTTT
66 CGATTTCACGAATTGCCAAATATCGAATATTGCCTTCGTTTTAAAGAATTTTT
107596279 GAATGATTGA
Statistics
Matches: 314, Mismatches: 53, Indels: 22
0.81 0.14 0.06
Matches are distributed among these distances:
127 2 0.01
128 2 0.01
129 129 0.41
130 7 0.02
131 82 0.26
132 91 0.29
133 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (133 bp):
AAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCA
CGATTTCACGAATTGCCAAATATCGAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACCATGA
GTG
Found at i:107597263 original size:2 final size:2
Alignment explanation
Indices: 107597256--107597305 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
107597246 AAAGTTAACG
107597256 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107597298 AT AT AT AT
1 AT AT AT AT
107597306 GAAATAGAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107599134 original size:125 final size:128
Alignment explanation
Indices: 107598946--107599242 Score: 449
Period size: 132 Copynumber: 2.3 Consensus size: 128
107598936 AGGATTGTGA
* *
107598946 CTTCGATCTGCTCCTCTGCAACTTCAGGGAAACAAGATCTAAAATTTCAACCTACTCCACTACAA
1 CTTCGATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAA
*
107599011 CTTTAGGGA-A-CTA-GGCTTAAATCTGCTTCACTGCAATTTCAGGAAGCTTAGATTCACCGT
66 CTTTAGGGACAGCTAGGGCTTAAATCTGCTTCACTGCAATTTCAGGAAGCCTAGATTCACCGT
* * *
107599071 CTTCGATCTGCTCCACTGCAACTTCAAGGAAACGAGATCTAAAATTTCAGCCTACTCCGCTACAA
1 CTTCGATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAA
*
107599136 CTTTAGGGAGCTAGGTTAGTGGCTTAAATCTGCTTCACTGCAATTTCAGGAAGCCTAGATTCACC
66 CTTTAGGGA-C-A-GCTAG-GGCTTAAATCTGCTTCACTGCAATTTCAGGAAGCCTAGATTCACC
107599201 GT
127 GT
*
107599203 CTTCGATCTGCCCCACTGCAAACTT-AGGGAAACGAGATCT
1 CTTCGATCTGCTCCACTGC-AACTTCAGGGAAACGAGATCT
107599243 GTAGGATTAG
Statistics
Matches: 155, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
125 69 0.45
128 1 0.01
130 2 0.01
132 78 0.50
133 5 0.03
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (128 bp):
CTTCGATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAA
CTTTAGGGACAGCTAGGGCTTAAATCTGCTTCACTGCAATTTCAGGAAGCCTAGATTCACCGT
Found at i:107603821 original size:37 final size:37
Alignment explanation
Indices: 107603780--107603853 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
107603770 CGAAAGTAAT
107603780 CATTTGTATGGTTCTGAATGAAATTGAAAGGATGAAA
1 CATTTGTATGGTTCTGAATGAAATTGAAAGGATGAAA
107603817 CATTTGTATGGTTCTGAATGAAATTGAAAGGATGAAA
1 CATTTGTATGGTTCTGAATGAAATTGAAAGGATGAAA
107603854 GATCATTTGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.32
Consensus pattern (37 bp):
CATTTGTATGGTTCTGAATGAAATTGAAAGGATGAAA
Found at i:107611348 original size:132 final size:131
Alignment explanation
Indices: 107611090--107611462 Score: 403
Period size: 132 Copynumber: 2.8 Consensus size: 131
107611080 TGAAAACCTA
* * * * * * *
107611090 AAGGAATATTCGATTGTTTTGACCAAATGAGAAATTGTAACCCAGCACGTTAGGGCACGATTCTC
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTC-C
* * * * * ** *
107611155 G-AATTGTCAAACACCGAATATTGCCTTCATTTTAGAGGTTTTTTAGAAGACCAGAATGAAATTT
65 GCAATTGCCAAATATCGAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACCAGAATGAAATTT
107611219 CG
130 CG
* * *
107611221 AAGGGGTATTTGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACATTAGGGCACAATTCCG
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTCCG
* * *
107611286 CAAATTGCCAAATATCAAACT-TTGCCTTCGTTTTAAAGAATTTTTAAAAG-GCATGAGTGAAAT
66 C-AATTGCCAAATATCGAA-TATTGCCTTCGTTTTAAAGAATTTTTAAAAGACCA-GAATGAAAT
*
107611349 TTTG
128 TTCG
* * * *
107611353 AAGGGATATTCAATCATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACTATTTCA
1 AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCAC-AATTC-
* * *
107611418 CG-AATTGCCAAATATCGAATCTCGTCTTCGTTTTAAAGAATTTTT
64 CGCAATTGCCAAATATCGAATATTGCCTTCGTTTTAAAGAATTTTT
107611463 GAATGAATGA
Statistics
Matches: 203, Mismatches: 32, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
130 2 0.01
131 56 0.28
132 138 0.68
133 5 0.02
134 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (131 bp):
AAGGGATATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTCCG
CAATTGCCAAATATCGAATATTGCCTTCGTTTTAAAGAATTTTTAAAAGACCAGAATGAAATTTC
G
Found at i:107615136 original size:94 final size:93
Alignment explanation
Indices: 107614912--107615185 Score: 261
Period size: 94 Copynumber: 2.9 Consensus size: 93
107614902 GGGTATAATG
* * *
107614912 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTA--CCGATGCCATGTC
1 CCGATGCCATGTCTC-GACATGGTCTTACACTGGCTCT--CATA-ACG-AGGCCGATG-CATGTC
* * * * * *
107614975 CCAGACATGGTCTTACACT-GACACCTCTAT-ACATG
60 CCAAACAT-GTCTTACACTAG-CTCTTGTCTCA-ATA
* * *
107615010 CCGATGCCATGTCTCGACATGGTCTTATACTGGCT-TACTTCACGAGGCCGATGCATGTCCCAAA
1 CCGATGCCATGTCTCGACATGGTCTTACACTGGCTCT-CATAACGAGGCCGATGCATGTCCCAAA
107615074 CATGTCTTACACTAGCTCTTGTCTCAATA
65 CATGTCTTACACTAGCTCTTGTCTCAATA
* * * * *
107615103 CCGATGCCATGTCTCAGGCATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCTCAGA
1 CCGATGCCATGTCTC-GACATGGTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAAA
107615168 CATGTCTTACACTAGCTC
65 CATGTCTTACACTAGCTC
107615186 ACAATAACCC
Statistics
Matches: 150, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
93 33 0.22
94 74 0.49
95 10 0.07
96 1 0.01
97 18 0.12
98 14 0.09
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (93 bp):
CCGATGCCATGTCTCGACATGGTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAAAC
ATGTCTTACACTAGCTCTTGTCTCAATA
Found at i:107615873 original size:13 final size:13
Alignment explanation
Indices: 107615855--107615879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107615845 CTAAAAGTAC
107615855 AAAAATCATCAAG
1 AAAAATCATCAAG
107615868 AAAAATCATCAA
1 AAAAATCATCAA
107615880 AATCACTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:107624868 original size:5 final size:5
Alignment explanation
Indices: 107624858--107624903 Score: 53
Period size: 5 Copynumber: 9.8 Consensus size: 5
107624848 TTTATTCCAT
* *
107624858 TTATA TTATA TTATA TT-TT TTATA TTATA -TATA TTA-A TTATT TTAT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT
107624904 TGTATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
4 11 0.31
5 24 0.69
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (5 bp):
TTATA
Found at i:107624875 original size:16 final size:16
Alignment explanation
Indices: 107624856--107624903 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 16
107624846 TATTTATTCC
107624856 ATTTATATTATATTAT
1 ATTTATATTATATTAT
107624872 ATTT-T-TTATATTAT
1 ATTTATATTATATTAT
107624886 A--TATATTA-ATTAT
1 ATTTATATTATATTAT
107624899 -TTTAT
1 ATTTAT
107624904 TGTATTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 1 0.04
13 6 0.21
14 16 0.57
15 1 0.04
16 4 0.14
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATATTATATTAT
Found at i:107624959 original size:21 final size:23
Alignment explanation
Indices: 107624930--107624977 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
107624920 AATTTACTTA
* *
107624930 ATATATCAT-TCTTAT-TATTTT
1 ATATATCATCTATTATATAGTTT
*
107624951 ATATTTCATCTATTATATAGTTT
1 ATATATCATCTATTATATAGTTT
107624974 ATAT
1 ATAT
107624978 CATTATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 8 0.36
22 5 0.23
23 9 0.41
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.58
Consensus pattern (23 bp):
ATATATCATCTATTATATAGTTT
Found at i:107636060 original size:46 final size:45
Alignment explanation
Indices: 107636000--107636265 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
107635990 TTTGACATGA
* * * * * *
107636000 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
107636046 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
107636092 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
107636138 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
107636184 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
107636222 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
107636266 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:107636229 original size:38 final size:38
Alignment explanation
Indices: 107636178--107636253 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
107636168 ACATTTTATA
107636178 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
107636216 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
107636254 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:107638362 original size:11 final size:11
Alignment explanation
Indices: 107638346--107638397 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
107638336 TATACTAAAT
107638346 AAATAATAATA
1 AAATAATAATA
*
107638357 AAATAAT-ATT
1 AAATAATAATA
* *
107638367 AAATATCTCATA
1 AAATA-ATAATA
*
107638379 AAATATTAATA
1 AAATAATAATA
107638390 AAATAATA
1 AAATAATA
107638398 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:107641545 original size:39 final size:39
Alignment explanation
Indices: 107641462--107641558 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
107641452 TGAAACCAAT
*
107641462 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
* * * *
107641500 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAA
* *
107641539 TTCCAGCACGTAGCCTGCGG
1 TACCAGCACGAAGCCTGCGG
107641559 ACCTTAAGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 14 0.29
39 35 0.71
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
Found at i:107641572 original size:39 final size:39
Alignment explanation
Indices: 107641529--107641652 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
107641519 GGACTTTAGC
* * * *
107641529 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
107641568 CCGGATATAATTCCAACACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
107641607 CTGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
107641646 CCGGATA
1 CCGGATA
107641653 CACATCAAAT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:107644039 original size:46 final size:46
Alignment explanation
Indices: 107643972--107644138 Score: 147
Period size: 46 Copynumber: 3.5 Consensus size: 46
107643962 ATTGACGGAA
* * *
107643972 AAGACCATGGTTGGACCATGGCATCAATGTGATATGTGATCCGTGT
1 AAGACCATAGTTGGGCTATGGCATCAATGTGATATGTGATCCGTGT
* * *
107644018 AAGACCATAGTTGGGCTATGGCATCAGAGATATGTGATTACGTGCTTCCGTAT
1 AAGACCATAGTTGGGCTATGGCATC----A-ATGTGA-TATGTG-ATCCGTGT
* * * *
107644071 AAGACCATA-TCTAGGATATGGCATCAGTGTGATATGTGATTCGTGT
1 AAGACCATAGT-TGGGCTATGGCATCAATGTGATATGTGATCCGTGT
* *
107644117 AAGACCATGGCTGGGCTATGGC
1 AAGACCATAGTTGGGCTATGGC
107644139 TACGGTGTGT
Statistics
Matches: 95, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
46 44 0.46
47 5 0.05
48 5 0.05
49 1 0.01
50 1 0.01
51 6 0.06
52 6 0.06
53 27 0.28
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (46 bp):
AAGACCATAGTTGGGCTATGGCATCAATGTGATATGTGATCCGTGT
Found at i:107644076 original size:53 final size:53
Alignment explanation
Indices: 107644011--107644115 Score: 133
Period size: 53 Copynumber: 2.0 Consensus size: 53
107644001 TGATATGTGA
* * *
107644011 TCCGTGTAAGACCATAGT-TGGGCTATGGCATCA-GAGATATGTGATTACGTGCT
1 TCCGTATAAGACCATA-TCTAGGATATGGCATCAGGAGATATGTGATT-CGTGCT
*
107644064 TCCGTATAAGACCATATCTAGGATATGGCATCAGTGTGATATGTGATTCGTG
1 TCCGTATAAGACCATATCTAGGATATGGCATCAG-GAGATATGTGATTCGTG
107644116 TAAGACCATG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
52 1 0.02
53 28 0.62
54 4 0.09
55 12 0.27
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (53 bp):
TCCGTATAAGACCATATCTAGGATATGGCATCAGGAGATATGTGATTCGTGCT
Found at i:107644147 original size:46 final size:48
Alignment explanation
Indices: 107643989--107644189 Score: 153
Period size: 46 Copynumber: 4.1 Consensus size: 48
107643979 TGGTTGGACC
* *
107643989 ATGGCATCA-A-TGTGATATGTGATCCGTGTAAGACCATAGTTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
* * * * * *
107644035 ATGGCATCAGAGATATGTGATTACGTGCTTCCGTATAAGACCATATCTAGGAT
1 ATGGCATCAGAG---TGTGA-TATGTGATT-CGTGTAAGACCATAGCTGGGCT
*
107644088 ATGGCATC--AGTGTGATATGTGATTCGTGTAAGACCATGGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
* * * * **
107644134 ATGGC-TACGGTGTGTGATATGTGACTAT-GTGCAAGACCATAGTTTTGCT
1 ATGGCAT-CAGAGTGTGATATGTGA-T-TCGTGTAAGACCATAGCTGGGCT
107644183 ATGGCAT
1 ATGGCAT
107644190 GATGAAAACG
Statistics
Matches: 121, Mismatches: 21, Indels: 22
0.74 0.13 0.13
Matches are distributed among these distances:
45 1 0.01
46 32 0.26
47 8 0.07
48 18 0.15
49 22 0.18
50 2 0.02
51 7 0.06
52 6 0.05
53 25 0.21
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
Found at i:107649815 original size:6 final size:7
Alignment explanation
Indices: 107649799--107649823 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
107649789 TTGAGATTTC
107649799 AAAAAGA
1 AAAAAGA
107649806 AAAAAGA
1 AAAAAGA
107649813 AAAAAGA
1 AAAAAGA
107649820 AAAA
1 AAAA
107649824 TGGAGAGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:107650813 original size:44 final size:44
Alignment explanation
Indices: 107650763--107651194 Score: 291
Period size: 44 Copynumber: 9.8 Consensus size: 44
107650753 TTTACATCGA
* *
107650763 AGCAGATCCAAGACAATAGATTTGGCATCTCTGTATTGGCAGGG
1 AGCAGATCGAAGACAATAGATTTGGCATCTCTGTATTGGCAGAG
* * * * ** *
107650807 AGCAGATCAAAGAC-ATAGCTGATTTGGC-TTTCACGCATTTAC-GTTAA
1 AGCAGATCGAAGACAATA---GATTTGGCATCTC-TGTATTGGCAG--AG
* * *
107650854 AGCAAATCTAAG---AT-GATTTGGCATCTCTGTATTGGCGGAG
1 AGCAGATCGAAGACAATAGATTTGGCATCTCTGTATTGGCAGAG
* * ** *
107650894 AGCAGATCGAATATACCAGATTTGGCATCTCTGTATTGGTAGAG
1 AGCAGATCGAAGACAATAGATTTGGCATCTCTGTATTGGCAGAG
* *
107650938 AGTAGATCGAAGACAATAGATTTGGCATCTCTGTATTGGCAGAA
1 AGCAGATCGAAGACAATAGATTTGGCATCTCTGTATTGGCAGAG
* ** * * * *
107650982 AGCAGATCAAAGATGACAGATTTGACATTTCTGTATTCGGCGGAG
1 AGCAGATCGAAGACAATAGATTTGGCATCTCTGTATT-GGCAGAG
* * * *
107651027 AGCAGATCGAAGACATAGTTGATTTGGCTTCCACGTGT-TT-ACATTGA-
1 AGCAGATCGAAGACA-A-TAGATTTGGCAT-CTC-TGTATTGGCA--GAG
*
107651074 AGCA-AGTCTAAG---AT-GATTTGGCATCTCTGTATTGGCAGAG
1 AGCAGA-TCGAAGACAATAGATTTGGCATCTCTGTATTGGCAGAG
* **
107651114 AGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAG
1 AGCAGATCGAAGACAATAGATTTGGCATCTCTGTATTGGCAGAG
* ** *
107651158 AGCAGATCAAAGATGACAGATTTGGCATCTCTGTATT
1 AGCAGATCGAAGACAATAGATTTGGCATCTCTGTATT
107651195 CGATTAACCC
Statistics
Matches: 300, Mismatches: 60, Indels: 56
0.72 0.14 0.13
Matches are distributed among these distances:
39 5 0.02
40 23 0.08
41 25 0.08
42 5 0.02
43 4 0.01
44 164 0.55
45 23 0.08
46 16 0.05
47 27 0.09
48 5 0.02
49 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
AGCAGATCGAAGACAATAGATTTGGCATCTCTGTATTGGCAGAG
Found at i:107651117 original size:220 final size:219
Alignment explanation
Indices: 107650762--107651194 Score: 634
Period size: 220 Copynumber: 2.0 Consensus size: 219
107650752 GTTTACATCG
* * *
107650762 AAGCAGATCCAAGACAATAGATTTGGCATCTCTGTATTGGCAGGGAGCAGATCAAAGACATAGCT
1 AAGCAGATCAAAGACAACAGATTTGACATCTCTGTATTGGCAGGGAGCAGATCAAAGACATAGCT
* * *
107650827 GATTTGGCTTTCACGCATTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCGG
66 GATTTGGCTTCCACGCATTTACATTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAG
* * * * *
107650892 AGAGCAGATCGAATATACCAGATTTGGCATCTCTGTATTGGTAGAGAGTAGATCGAAGACAATAG
131 AGAGCAGATCGAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGACAACAG
107650957 ATTTGGCATCTCTGTATTGGCAGA
196 ATTTGGCATCTCTGTATTGGCAGA
** * *
107650981 AAGCAGATCAAAGATGACAGATTTGACATTTCTGTATTCGGC-GGAGAGCAGATCGAAGACATAG
1 AAGCAGATCAAAGACAACAGATTTGACATCTCTGTATT-GGCAGG-GAGCAGATCAAAGACATAG
* ** * *
107651045 TTGATTTGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGC
64 CTGATTTGGCTTCCACGCATTTACATTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGC
* **
107651110 AGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGAC
129 AGAGAGCAGATCGAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGACAAC
107651175 AGATTTGGCATCTCTGTATT
194 AGATTTGGCATCTCTGTATT
107651195 CGATTAACCC
Statistics
Matches: 189, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
219 34 0.18
220 155 0.82
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (219 bp):
AAGCAGATCAAAGACAACAGATTTGACATCTCTGTATTGGCAGGGAGCAGATCAAAGACATAGCT
GATTTGGCTTCCACGCATTTACATTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAG
AGAGCAGATCGAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGACAACAG
ATTTGGCATCTCTGTATTGGCAGA
Found at i:107651338 original size:18 final size:16
Alignment explanation
Indices: 107651297--107651330 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
107651287 GTTACACCTA
*
107651297 AACCCAAACAAGACCC
1 AACCTAAACAAGACCC
*
107651313 AACCTAAACAAGGCCC
1 AACCTAAACAAGACCC
107651329 AA
1 AA
107651331 TGCCTAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.38, G:0.09, T:0.03
Consensus pattern (16 bp):
AACCTAAACAAGACCC
Found at i:107654149 original size:47 final size:47
Alignment explanation
Indices: 107654098--107654281 Score: 282
Period size: 47 Copynumber: 4.0 Consensus size: 47
107654088 TTAGGATTTT
107654098 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
107654145 ATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
107654192 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
107654239 ATGTGGTGAATATGAACATG--TATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
107654282 TAGTGTGAAA
Statistics
Matches: 127, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 20 0.16
47 107 0.84
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:107654151 original size:22 final size:22
Alignment explanation
Indices: 107654123--107654198 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
107654113 ACATGCATAT
107654123 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
107654145 ATGTGATAAATGTG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-CA
107654169 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
107654192 ATGTGAT
1 ATGTGAT
107654199 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:107654247 original size:25 final size:25
Alignment explanation
Indices: 107654172--107654247 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
107654162 ATGCATATAT
107654172 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
107654197 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
107654219 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
107654244 GTGA
1 GTGA
107654248 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:107654552 original size:37 final size:37
Alignment explanation
Indices: 107654444--107654552 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
107654434 GGAAATATAT
*
107654444 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
107654481 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* **
107654518 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
107654553 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:107656581 original size:5 final size:5
Alignment explanation
Indices: 107656571--107656616 Score: 53
Period size: 5 Copynumber: 9.8 Consensus size: 5
107656561 TTTATTCCAT
* *
107656571 TTATA TTATA TTATA TT-TT TTATA TTATA -TATA TTA-A TTATT TTAT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT
107656617 TGTATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
4 11 0.31
5 24 0.69
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (5 bp):
TTATA
Found at i:107656588 original size:16 final size:16
Alignment explanation
Indices: 107656569--107656616 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 16
107656559 TATTTATTCC
107656569 ATTTATATTATATTAT
1 ATTTATATTATATTAT
107656585 ATTT-T-TTATATTAT
1 ATTTATATTATATTAT
107656599 A--TATATTA-ATTAT
1 ATTTATATTATATTAT
107656612 -TTTAT
1 ATTTAT
107656617 TGTATTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 1 0.04
13 6 0.21
14 16 0.57
15 1 0.04
16 4 0.14
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATATTATATTAT
Done.