Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 348 of 425
Found at i:107656671 original size:21 final size:23
Alignment explanation
Indices: 107656642--107656689 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
107656632 AATTTACTTA
* *
107656642 ATATATCAT-TCTTAT-TATTTT
1 ATATATCATCTATTATATAGTTT
*
107656663 ATATTTCATCTATTATATAGTTT
1 ATATATCATCTATTATATAGTTT
107656686 ATAT
1 ATAT
107656690 CATTATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 8 0.36
22 5 0.23
23 9 0.41
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.58
Consensus pattern (23 bp):
ATATATCATCTATTATATAGTTT
Found at i:107664917 original size:21 final size:20
Alignment explanation
Indices: 107664893--107665161 Score: 87
Period size: 20 Copynumber: 12.8 Consensus size: 20
107664883 TTTAATGATA
107664893 ATAATATATAGATAAAAATGT
1 ATAATATATA-ATAAAAATGT
107664914 ATAATAATATAA-AAAAATGACAT
1 ATAAT-ATATAATAAAAATG---T
107664937 AATAATATATAATAAAATAAT-T
1 -ATAATATATAAT-AAA-AATGT
*
107664959 ATAATATATAATATAAAA-AT
1 ATAATATATAATA-AAAATGT
* *
107664979 AT-ATATGTAA-AAATAATAT
1 ATAATATATAATAAA-AATGT
107664998 ATAATATAT-ATAAATAAT-T
1 ATAATATATAATAAA-AATGT
*
107665017 AATAAATATATAAT-ACAA-GT
1 -AT-AATATATAATAAAAATGT
* * *
107665037 A-AAAATATAATAATAATAT
1 ATAATATATAATAAAAATGT
* *
107665056 ATAA-ATAATAATTTAAAAT-A
1 ATAATAT-ATAA-TAAAAATGT
* *
107665076 ATAATAATTTTGAA-AAATAATAT
1 ATAAT-A-TAT-AATAAA-AATGT
* **
107665099 ATAATAAATAATAATAATATAA
1 ATAATATATAATAA-AA-ATGT
*
107665121 ATAATATATAATAAAATAATTAT
1 ATAATATATAAT-AAA-AA-TGT
107665144 ATAATATATAATATAAAA
1 ATAATATATAATA-AAAA
107665162 ATAAGGTTAA
Statistics
Matches: 195, Mismatches: 17, Indels: 71
0.69 0.06 0.25
Matches are distributed among these distances:
17 11 0.06
18 6 0.03
19 18 0.09
20 42 0.22
21 39 0.20
22 34 0.17
23 34 0.17
24 5 0.03
25 3 0.02
26 3 0.02
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (20 bp):
ATAATATATAATAAAAATGT
Found at i:107664917 original size:24 final size:22
Alignment explanation
Indices: 107664886--107665010 Score: 81
Period size: 23 Copynumber: 5.8 Consensus size: 22
107664876 AAAAACCTTT
107664886 AATG-ATAATAATATATAGATAAA
1 AATGTATAAT-ATATATA-ATAAA
107664909 AATGTATAATA-ATATAA-AAA
1 AATGTATAATATATATAATAAA
*
107664929 AATGACATAATAATATATAATAAAA
1 AATG-TATAAT-ATATATAAT-AAA
107664954 TAAT-TATAATATATA-ATATAAA
1 -AATGTATAATATATATA-ATAAA
* *
107664976 AA--TAT-ATATGTA-AA-AAT
1 AATGTATAATATATATAATAAA
*
107664993 AATATATAATATATATAA
1 AATGTATAATATATATAA
107665011 ATAATTAATA
Statistics
Matches: 85, Mismatches: 5, Indels: 26
0.73 0.04 0.22
Matches are distributed among these distances:
17 4 0.05
18 1 0.01
19 10 0.12
20 16 0.19
21 10 0.12
22 10 0.12
23 18 0.21
24 10 0.12
25 3 0.04
26 3 0.04
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.34
Consensus pattern (22 bp):
AATGTATAATATATATAATAAA
Found at i:107664925 original size:29 final size:28
Alignment explanation
Indices: 107664862--107664925 Score: 65
Period size: 30 Copynumber: 2.2 Consensus size: 28
107664852 AAAAATAAGT
* * *
107664862 ATATAATATAAGTTAAAAACCTTTAATG
1 ATATAATATAAGATAAAAACCTATAATA
**
107664890 ATAATAATATATAGATAAAAATGTATAATA
1 AT-ATAATATA-AGATAAAAACCTATAATA
107664920 ATATAA
1 ATATAA
107664926 AAAAATGACA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 2 0.07
29 12 0.41
30 15 0.52
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.34
Consensus pattern (28 bp):
ATATAATATAAGATAAAAACCTATAATA
Found at i:107665002 original size:45 final size:46
Alignment explanation
Indices: 107664917--107665165 Score: 129
Period size: 45 Copynumber: 5.6 Consensus size: 46
107664907 AAAATGTATA
* * *
107664917 ATAATATAAAAAAATGACATAATAATATATAATAAA-ATAATTATAATAT
1 ATAATAT-AATAAAT-ATATAATAA-AAATAA-AAATATAATTATAATAT
* * *
107664966 ATAATATAA-AAATATATATGTAAAAAT-AATATATAA-TATATATAA
1 ATAATATAATAAATATATA-ATAAAAATAAAAATATAATTATA-ATAT
* * *
107665011 ATAAT-TAATAAATATATAATACAAGTAAAAATATAATAATAATAT
1 ATAATATAATAAATATATAATAAAAATAAAAATATAATTATAATAT
* * * **
107665056 ATAA-ATAAT-AAT-T-TAA-AATAATAATAATTTTGAAAAATAATAT
1 ATAATATAATAAATATATAATAAAAATAA-AAATAT-AATTATAATAT
* * *
107665099 ATAATA-AAT-AATA-ATAATATAAAT-AATATATAA-TAAAATA-
1 ATAATATAATAAATATATAATAAAAATAAAAATATAATTATAATAT
* *
107665139 ATTATATAATATATA-AT-ATAAAAATAA
1 ATAATATAATAAATATATAATAAAAATAA
107665166 GGTTAAAAAT
Statistics
Matches: 157, Mismatches: 27, Indels: 39
0.70 0.12 0.17
Matches are distributed among these distances:
40 5 0.03
41 20 0.13
42 15 0.10
43 24 0.15
44 22 0.14
45 45 0.29
46 10 0.06
47 7 0.04
48 2 0.01
49 7 0.04
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.35
Consensus pattern (46 bp):
ATAATATAATAAATATATAATAAAAATAAAAATATAATTATAATAT
Found at i:107665021 original size:11 final size:12
Alignment explanation
Indices: 107664916--107665165 Score: 103
Period size: 11 Copynumber: 21.4 Consensus size: 12
107664906 AAAAATGTAT
*
107664916 AATAATATAAAAA
1 AATAATAT-AATA
* *
107664929 AATGACATAAT-
1 AATAATATAATA
107664940 AAT-ATATAATAA
1 AATAATATAAT-A
107664952 AATAATTATAATA
1 AATAA-TATAATA
*
107664965 TATAATATAA-A
1 AATAATATAATA
107664976 AATATATATGTAA-A
1 AATA-ATA--TAATA
107664990 AATAATAT-AT-
1 AATAATATAATA
107665000 AAT-ATAT-ATA
1 AATAATATAATA
107665010 AATAAT-TAATA
1 AATAATATAATA
107665021 AAT-ATATAATA
1 AATAATATAATA
107665032 CAAGTAA-A-AAT-
1 -AA-TAATATAATA
107665043 -ATAATAATAATA
1 AATAAT-ATAATA
*
107665055 TATAA-ATAATA
1 AATAATATAATA
* *
107665066 ATTTAAAATAAT-
1 A-ATAATATAATA
*
107665078 AATAATTTTGAA-A
1 AATAA-TAT-AATA
107665091 AATAATAT-AT-
1 AATAATATAATA
107665101 AATAAATAATAATA
1 AAT-AAT-ATAATA
107665115 ATATAA-ATAATA
1 A-ATAATATAATA
* *
107665127 TATAATAAAAT-
1 AATAATATAATA
*
107665138 AATTATATAATA
1 AATAATATAATA
*
107665150 TATAATATAA-A
1 AATAATATAATA
107665161 AATAA
1 AATAA
107665166 GGTTAAAAAT
Statistics
Matches: 184, Mismatches: 20, Indels: 68
0.68 0.07 0.25
Matches are distributed among these distances:
8 3 0.02
9 7 0.04
10 21 0.11
11 53 0.29
12 45 0.24
13 35 0.19
14 18 0.10
15 2 0.01
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (12 bp):
AATAATATAATA
Found at i:107665077 original size:30 final size:30
Alignment explanation
Indices: 107664937--107665164 Score: 157
Period size: 30 Copynumber: 7.3 Consensus size: 30
107664927 AAAATGACAT
*
107664937 AATAATATATAATAAAATAATTATAATATATA
1 AATAATA-AT-ATAAAATAATAATAATATATA
* ** *
107664969 ATATAAAAATATATATGTAAAAATAATATAT-
1 A-ATAATAATATA-AAATAATAATAATATATA
107665000 AAT-AT-ATAT-AAATAATTAATAAATATATA
1 AATAATAATATAAAATAA-TAAT-AATATATA
* *
107665029 ATACAAGTAA-A-AATATAATAATAATATATA
1 A-ATAA-TAATATAAAATAATAATAATATATA
* *
107665059 AATAATAATTTAAAATAATAATAAT-TTTGA
1 AATAATAATATAAAATAATAATAATATAT-A
*
107665089 AA-AATAATATATAATAAATAATAATAATATA
1 AATAATAATATAAAAT-AATAATAAT-ATATA
107665120 AATAATATATAATAAAATAATTATATAATATATA
1 AATAATA-AT-ATAAAATAA-TA-ATAATATATA
*
107665154 ATATAAAAATA
1 A-ATAATAATA
107665165 AGGTTAAAAA
Statistics
Matches: 154, Mismatches: 20, Indels: 43
0.71 0.09 0.20
Matches are distributed among these distances:
26 4 0.03
27 3 0.02
28 14 0.09
29 18 0.12
30 37 0.24
31 12 0.08
32 29 0.19
33 11 0.07
34 16 0.10
35 10 0.06
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (30 bp):
AATAATAATATAAAATAATAATAATATATA
Found at i:107670605 original size:28 final size:27
Alignment explanation
Indices: 107670562--107670667 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
107670552 GAAATCAGAG
107670562 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
*
107670589 TTAATCTGGGCCATAGCACCTTA-CAATA
1 TTAATCTGGGCC-TAGC-CCATATCAATA
* *
107670617 TCAGAGTATACTGGGCCTAGCCCATATCAGT-
1 T--TA--AT-CTGGGCCTAGCCCATATCAATA
107670648 TTCAATCTGGGCCGTAGCCC
1 TT-AATCTGGGCC-TAGCCC
107670668 TATTACAAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 19
0.72 0.07 0.22
Matches are distributed among these distances:
27 11 0.17
28 25 0.40
29 4 0.06
30 2 0.03
31 5 0.08
32 9 0.14
33 7 0.11
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:107670674 original size:61 final size:59
Alignment explanation
Indices: 107670532--107670703 Score: 174
Period size: 60 Copynumber: 2.8 Consensus size: 59
107670522 TCAAGCTTTA
*
107670532 CTGGGCCTAAGCCCTATTCAGAAATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCT-AGCCCTATT-ACAAATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATTAAT
*
107670594 CTGGGCCATAGCACC--TTACAATATCAGAGTATACTGGGCCTAGCCCATATCAGT-TTCAAT
1 CTGGGCC-TAGC-CCTATTACAA-ATCAGAGTATACTGGGCCTAGCCCATATCAATATT-AAT
* * *
107670654 CTGGGCCGTAGCCCTATTACAAGTC-GAGATATATTGGGCCTTGCCCATAT
1 CTGGGCC-TAGCCCTATTACAAATCAGAG-TATACTGGGCCTAGCCCATAT
107670704 TAACACAGTT
Statistics
Matches: 96, Mismatches: 6, Indels: 18
0.80 0.05 0.15
Matches are distributed among these distances:
59 7 0.07
60 51 0.53
61 24 0.25
62 11 0.11
63 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (59 bp):
CTGGGCCTAGCCCTATTACAAATCAGAGTATACTGGGCCTAGCCCATATCAATATTAAT
Found at i:107670721 original size:20 final size:20
Alignment explanation
Indices: 107670696--107670735 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
107670686 ATTGGGCCTT
107670696 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
107670716 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
107670736 CTCATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:107677231 original size:18 final size:18
Alignment explanation
Indices: 107677192--107677289 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
107677182 AATGATATGT
107677192 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
107677209 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
107677227 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
107677244 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
107677262 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
107677281 AATCTTAGA
1 AATCTTAGA
107677290 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 29 0.40
18 32 0.44
19 11 0.15
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:107677232 original size:35 final size:35
Alignment explanation
Indices: 107677183--107677287 Score: 165
Period size: 35 Copynumber: 2.9 Consensus size: 35
107677173 ATAATCTTCA
*
107677183 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
107677219 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
107677254 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTA
107677288 GAAGATATGA
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 49 0.75
36 5 0.08
37 11 0.17
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:107677788 original size:18 final size:17
Alignment explanation
Indices: 107677764--107677823 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
107677754 CCATTATATT
107677764 TTATATTTTTTATATAA
1 TTATATTTTTTATATAA
*
107677781 TTAT-TATTCTTATA-AA
1 TTATAT-TTTTTATATAA
107677797 -TATATTTTTTATTATATA
1 TTATATTTTTTA-TATA-A
107677815 TTATATTTT
1 TTATATTTT
107677824 AAATTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
15 8 0.23
16 6 0.17
17 12 0.34
18 1 0.03
19 8 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTTTTTATATAA
Found at i:107677808 original size:15 final size:16
Alignment explanation
Indices: 107677765--107677823 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 16
107677755 CATTATATTT
107677765 TATATTTTTTATATAA
1 TATATTTTTTATATAA
107677781 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
107677797 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
107677815 TTATATTTT
1 -TATATTTT
107677824 AAATTTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 7 0.19
16 10 0.28
17 10 0.28
18 1 0.03
19 8 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:107677848 original size:26 final size:26
Alignment explanation
Indices: 107677800--107677849 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
107677790 TTATAAATAT
* * * *
107677800 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
107677826 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
107677850 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:107682112 original size:8 final size:8
Alignment explanation
Indices: 107682096--107682128 Score: 52
Period size: 7 Copynumber: 4.4 Consensus size: 8
107682086 CATCTATTTT
107682096 AAAAA-AA
1 AAAAAGAA
107682103 AAAAAGAA
1 AAAAAGAA
107682111 AAAAAG-A
1 AAAAAGAA
107682118 AAAAAGAA
1 AAAAAGAA
107682126 AAA
1 AAA
107682129 GATTATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 12 0.50
8 12 0.50
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:107682120 original size:15 final size:14
Alignment explanation
Indices: 107682096--107682128 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
107682086 CATCTATTTT
107682096 AAAAAAAAAAAAGA
1 AAAAAAAAAAAAGA
107682110 AAAAAAGAAAAAAGA
1 AAAAAA-AAAAAAGA
107682125 AAAA
1 AAAA
107682129 GATTATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAGA
Found at i:107683624 original size:14 final size:14
Alignment explanation
Indices: 107683601--107683659 Score: 61
Period size: 13 Copynumber: 4.3 Consensus size: 14
107683591 CTTCTATTTC
107683601 AAAAAA-AAAAGAA
1 AAAAAAGAAAAGAA
107683614 AAAAAAGAAAAG-A
1 AAAAAAGAAAAGAA
*
107683627 AAAAGAGAAAA-AA
1 AAAAAAGAAAAGAA
*
107683640 ATAAAGAGAAAAAGAA
1 A-AAAAAG-AAAAGAA
107683656 AAAA
1 AAAA
107683660 TGGAGAGGCC
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
13 19 0.47
14 11 0.28
15 7 0.17
16 3 0.08
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.02
Consensus pattern (14 bp):
AAAAAAGAAAAGAA
Found at i:107683653 original size:22 final size:20
Alignment explanation
Indices: 107683601--107683659 Score: 82
Period size: 21 Copynumber: 2.9 Consensus size: 20
107683591 CTTCTATTTC
*
107683601 AAAAAAAAAAGAAAAAAAAG
1 AAAAGAAAAAGAAAAAAAAG
*
107683621 AAAAGAAAAAGAGAAAAAAAT
1 AAAAGAAAAAGA-AAAAAAAG
107683642 AAAGAGAAAAAGAAAAAA
1 AAA-AGAAAAAGAAAAAA
107683660 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
20 11 0.31
21 15 0.43
22 9 0.26
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.02
Consensus pattern (20 bp):
AAAAGAAAAAGAAAAAAAAG
Found at i:107684561 original size:44 final size:44
Alignment explanation
Indices: 107684511--107684704 Score: 162
Period size: 44 Copynumber: 4.4 Consensus size: 44
107684501 ATGGGACAAT
*
107684511 AGATCAAAGA-AACAAGATTTGGCATCCCTATGTTTATAGGGAAC
1 AGATCGAAGATAAC-AGATTTGGCATCCCTATGTTTATAGGGAAC
* ** * * * * * *
107684555 AGATCAAAGATAGTAGATCTGACATTCCTATGCTTACAGCGAAGC
1 AGATCGAAGATAACAGATTTGGCATCCCTATGTTTATAGGGAA-C
* ** *
107684600 AGATTGAAGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAAC
1 AGATCGAAGATAACAG-ATTTGGCATCCCTATGTTTATAGGGAAC
* * *
107684643 A-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAAC
1 AGA-TCGAAGATAACAGATTTGGCATCCCTATGTTTATAGGGAAC
*
107684687 AGATCGAAGATAGCAGAT
1 AGATCGAAGATAACAGAT
107684705 CTAACCTTCA
Statistics
Matches: 121, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
42 2 0.02
43 13 0.11
44 91 0.75
45 14 0.12
46 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (44 bp):
AGATCGAAGATAACAGATTTGGCATCCCTATGTTTATAGGGAAC
Found at i:107684904 original size:119 final size:119
Alignment explanation
Indices: 107684696--107685288 Score: 1026
Period size: 119 Copynumber: 5.0 Consensus size: 119
107684686 CAGATCGAAG
107684696 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
* * *
107684761 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACATTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
107684815 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
107684880 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
107684934 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
107684999 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
107685053 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
*
107685118 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
107685172 ATAGCAGATCTAACCTTCAGATGTTTATATTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
107685237 TTACAAGGAAC-AATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
107685289 CAGACTCAAG
Statistics
Matches: 453, Mismatches: 21, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
118 37 0.08
119 416 0.92
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:107685367 original size:83 final size:83
Alignment explanation
Indices: 107685213--107685481 Score: 468
Period size: 84 Copynumber: 3.2 Consensus size: 83
107685203 GAAGTAGATC
107685213 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAAC-AATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
107685277 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
107685295 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
107685360 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
107685378 CAAGATGGTTTAGGCATCCTGGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
107685443 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
107685462 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
107685482 ACAAATCGAA
Statistics
Matches: 178, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
82 35 0.20
83 65 0.37
84 78 0.44
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:107685906 original size:18 final size:18
Alignment explanation
Indices: 107685867--107685964 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
107685857 AATGATATGT
107685867 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
* *
107685884 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
107685902 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
107685919 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
107685937 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
107685956 AATCTTAGA
1 AATCTTAGA
107685965 AGATATGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 29 0.40
18 32 0.44
19 11 0.15
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:107685907 original size:35 final size:35
Alignment explanation
Indices: 107685858--107685962 Score: 165
Period size: 35 Copynumber: 2.9 Consensus size: 35
107685848 ATAATCTTCA
*
107685858 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
107685894 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
107685929 ATGATTGCAATCTTAGATATGATATACAATCTTA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTA
107685963 GAAGATATGA
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 49 0.75
36 5 0.08
37 11 0.17
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:107686451 original size:17 final size:17
Alignment explanation
Indices: 107686431--107686496 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
107686421 TTCTAAACCA
*
107686431 ATATATTTTATATTTTT
1 ATATATATTATATTTTT
*
107686448 ATATA-ATTATTATTCTT
1 ATATATATTA-TATTTTT
*
107686465 ATAAATA-TAT-TTTTT
1 ATATATATTATATTTTT
107686480 ATTATATATTATATTTT
1 A-TATATATTATATTTT
107686497 AAATTTATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.13
16 9 0.23
17 20 0.51
18 5 0.13
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
ATATATATTATATTTTT
Found at i:107686521 original size:26 final size:26
Alignment explanation
Indices: 107686473--107686522 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
107686463 TTATAAATAT
* * * *
107686473 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
107686499 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
107686523 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:107692311 original size:19 final size:19
Alignment explanation
Indices: 107692287--107692449 Score: 259
Period size: 19 Copynumber: 8.9 Consensus size: 19
107692277 AATCATATCT
*
107692287 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
107692306 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
107692324 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
107692341 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
107692359 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
107692376 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
107692394 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
107692413 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
107692432 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
107692450 TGAAGATTAT
Statistics
Matches: 134, Mismatches: 3, Indels: 14
0.89 0.02 0.09
Matches are distributed among these distances:
17 32 0.24
18 50 0.37
19 52 0.39
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:107692345 original size:35 final size:36
Alignment explanation
Indices: 107692287--107692449 Score: 267
Period size: 35 Copynumber: 4.5 Consensus size: 36
107692277 AATCATATCT
107692287 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
107692324 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
107692359 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
*
107692394 TCTAAGATTGCATATCACATCTAAGATTGCATATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCA-ATCATA
107692432 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
107692450 TGAAGATTAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
35 70 0.58
37 28 0.23
38 23 0.19
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Found at i:107693814 original size:207 final size:207
Alignment explanation
Indices: 107693278--107694011 Score: 1301
Period size: 207 Copynumber: 3.6 Consensus size: 207
107693268 GATTGTTCTT
*
107693278 GAATATGGAGACGCTAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAC
1 GAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAC
**
107693343 TTGCTTCAACGTAAACACGTGAAAGTAAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
66 TTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
107693408 AGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGT
131 AGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGT
107693473 C-GCCCTCCGTC
196 CTGCCCTCCGTC
*
107693484 GAATATGGAGACGCC-AACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAC
1 GAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAC
107693548 TTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
66 TTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
*
107693613 AGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTAT
131 AGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGT
*
107693678 CTGCCCTTCGTC
196 CTGCCCTCCGTC
* *
107693690 GAATATGGAGACCCCAAACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAC
1 GAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAC
*
107693755 TTGCTTCAATGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
66 TTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
107693820 AGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGT
131 AGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGT
*
107693885 TTGCCCTCCGTC
196 CTGCCCTCCGTC
* * *
107693897 GAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATATAGAGATGCCAAATCATCTTAGAT
1 GAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAC
* * **
107693962 TTGCTTCATCATAAGTACGTGAAAGCCAAATCAGCTATGTCTTCGATTTG
66 TTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTG
107694012 CTCTCCGTCG
Statistics
Matches: 503, Mismatches: 23, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
205 176 0.35
206 37 0.07
207 290 0.58
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (207 bp):
GAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGAC
TTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACA
AGGATGCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGT
CTGCCCTCCGTC
Found at i:107694130 original size:131 final size:118
Alignment explanation
Indices: 107693825--107694130 Score: 297
Period size: 131 Copynumber: 2.5 Consensus size: 118
107693815 GCACAAGGAT
* * *
107693825 GCCAAACCATCTTGGATCTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTTTGCC
1 GCCAAATCATCTTGGATC-TGCTTCAGCA-AAACACCTGAAGGCCAGATCTGCTATGTGTTTGCC
* *
107693890 CTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATATAGAGAT
64 CTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGAC
* * * ** * * * *
107693945 GCCAAATCATCTTAGATTTGCTTCATCATAAGTACGTGAAAGCCAAATCAGCTATGTCTTCGATT
1 GCCAAATCATCTTGGATCTGCTTCAGCA-AAACACCTGAAGGCCAGATCTGCTATG---T-G-TT
* * *
107694010 TGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTCTGACAATACAGAGA
60 TGCCCTCCGTCGAATATGGAGACGCCAAA-------CTTCGATTTGTTCTCTAACAATACAGAGA
107694075 C
118 C
**
107694076 GCCAAATCATCTTGGATCTGCTTCAGCGCGAACACCTGAAGGCCAGATCTGCTAT
1 GCCAAATCATCTTGGATCTGCTTCAGC-AAAACACCTGAAGGCCAGATCTGCTAT
107694131 ACTTTAACCT
Statistics
Matches: 145, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
119 29 0.20
120 15 0.10
122 1 0.01
123 1 0.01
124 29 0.20
131 70 0.48
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (118 bp):
GCCAAATCATCTTGGATCTGCTTCAGCAAAACACCTGAAGGCCAGATCTGCTATGTGTTTGCCCT
CCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGAC
Found at i:107695055 original size:14 final size:14
Alignment explanation
Indices: 107695036--107695063 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
107695026 GATCCAAAGT
107695036 AATTCGTTGATGCC
1 AATTCGTTGATGCC
107695050 AATTCGTTGATGCC
1 AATTCGTTGATGCC
107695064 TCGATATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (14 bp):
AATTCGTTGATGCC
Found at i:107695226 original size:7 final size:7
Alignment explanation
Indices: 107695214--107695275 Score: 83
Period size: 7 Copynumber: 8.9 Consensus size: 7
107695204 GGCCTCTCCA
107695214 TTTTTTC
1 TTTTTTC
107695221 TTTTTTC
1 TTTTTTC
107695228 TTTTTTC
1 TTTTTTC
107695235 TCTTTTT-
1 T-TTTTTC
107695242 TTTTTTC
1 TTTTTTC
107695249 TTTTTTC
1 TTTTTTC
*
107695256 TCTTTTC
1 TTTTTTC
107695263 TTTTATT-
1 TTTT-TTC
107695270 TTTTTT
1 TTTTTT
107695276 GCCTTTTTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
6 7 0.14
7 36 0.72
8 7 0.14
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTC
Found at i:107695245 original size:21 final size:21
Alignment explanation
Indices: 107695215--107695286 Score: 94
Period size: 21 Copynumber: 3.4 Consensus size: 21
107695205 GCCTCTCCAT
107695215 TTTTTCTTTTTTCTTTTTTCTC
1 TTTTT-TTTTTTCTTTTTTCTC
107695237 TTTTTTTTTTTCTTTTTTCTC
1 TTTTTTTTTTTCTTTTTTCTC
*
107695258 TTTTCTTTTATTT-TTTTTGC-C
1 TTTT-TTTT-TTTCTTTTTTCTC
107695279 TTTTTTTT
1 TTTTTTTT
107695287 GAAATAGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
20 4 0.09
21 25 0.53
22 15 0.32
23 3 0.06
ACGTcount: A:0.01, C:0.14, G:0.01, T:0.83
Consensus pattern (21 bp):
TTTTTTTTTTTCTTTTTTCTC
Found at i:107695246 original size:28 final size:28
Alignment explanation
Indices: 107695214--107695284 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
107695204 GGCCTCTCCA
*
107695214 TTTTTTCTTTTTTCTTTTTTCTCTTT-TT
1 TTTTTTCTTTTTTCTCTTTTCT-TTTATT
107695242 TTTTTTCTTTTTTCTCTTTTCTTTTATT
1 TTTTTTCTTTTTTCTCTTTTCTTTTATT
107695270 TTTTTTGCCTTTTTT
1 TTTTTT--CTTTTTT
107695285 TTGAAATAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 3 0.08
28 29 0.74
30 7 0.18
ACGTcount: A:0.01, C:0.14, G:0.01, T:0.83
Consensus pattern (28 bp):
TTTTTTCTTTTTTCTCTTTTCTTTTATT
Found at i:107701050 original size:17 final size:17
Alignment explanation
Indices: 107700997--107701114 Score: 146
Period size: 17 Copynumber: 6.6 Consensus size: 17
107700987 AATCATATCT
107700997 TCTAAGATTGTATATCATA
1 TCTAAGATTG--TATCATA
*
107701016 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
*
107701034 TCCAAGATTGTATCATA
1 TCTAAGATTGTATCATA
*
107701051 TCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
107701069 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
*
107701086 TCTAAGATTGTATATCACA
1 TCTAAGATTG--TATCATA
107701105 TCTAAGATTG
1 TCTAAGATTG
107701115 CATATCATTA
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
17 31 0.35
18 31 0.35
19 26 0.30
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:107701053 original size:35 final size:35
Alignment explanation
Indices: 107700997--107701114 Score: 182
Period size: 35 Copynumber: 3.3 Consensus size: 35
107700987 AATCATATCT
107700997 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
107701034 TCCAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
107701069 TCTAAGATTGTATCATATCTAAGATTGTATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
107701105 TCTAAGATTG
1 TCTAAGATTG
107701115 CATATCATTA
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
35 52 0.68
36 15 0.20
37 9 0.12
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:107708101 original size:6 final size:6
Alignment explanation
Indices: 107708080--107708132 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
107708070 ACTAACTATA
* * * *
107708080 TTTAGT TTTATGT TTTATT TTTATT TGTACT TTTATT TTTATT GTTTGTT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT -TTTATT
107708130 TTT
1 TTT
107708133 TAAATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 28 0.72
7 11 0.28
ACGTcount: A:0.13, C:0.02, G:0.09, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:107711446 original size:18 final size:17
Alignment explanation
Indices: 107711424--107711469 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
107711414 CTCTTTATTC
107711424 TAAAAATAAGAT-AAAAA
1 TAAAAATAA-ATAAAAAA
107711441 TAAAAATAAATGAAAAAA
1 TAAAAATAAAT-AAAAAA
107711459 TAAAAAATAAA
1 T-AAAAATAAA
107711470 AATTTTTGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 2 0.08
17 9 0.35
18 6 0.23
19 9 0.35
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (17 bp):
TAAAAATAAATAAAAAA
Found at i:107715651 original size:106 final size:108
Alignment explanation
Indices: 107715447--107715655 Score: 278
Period size: 106 Copynumber: 1.9 Consensus size: 108
107715437 TGCCGAAATG
* *
107715447 AGAAAGGTGCATATTGGCCAATTATTTCTAACCTTTCTCGTGTGAGGATAAATTATGTTGACATC
1 AGAAAGCTGCATATTGGCCAATTATTTCTAACCTTTCACGTGTGAGGAT-AATTATGTTGACATC
*
107715512 CGCTCAACAAGAACAAGCAGATTGCATTTCTAGATGGAGAGCAA
65 CGCTCAACAAGAACAAGCAGATTGCATTCCTAGATGGAGAGCAA
* * * * *
107715556 AGAAAGCTGCATATTGGCCTATTATTTCTCACC-TTCACTTGTGAGGAT-GTTATGTTGACATCT
1 AGAAAGCTGCATATTGGCCAATTATTTCTAACCTTTCACGTGTGAGGATAATTATGTTGACATCC
* * * * *
107715619 TCTGAACAAGCATAGGCAGATTGCATTCCTAGATGGA
66 GCTCAACAAGAACAAGCAGATTGCATTCCTAGATGGA
107715656 CAGCGAAAAC
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
106 44 0.51
108 13 0.15
109 30 0.34
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (108 bp):
AGAAAGCTGCATATTGGCCAATTATTTCTAACCTTTCACGTGTGAGGATAATTATGTTGACATCC
GCTCAACAAGAACAAGCAGATTGCATTCCTAGATGGAGAGCAA
Found at i:107719008 original size:27 final size:28
Alignment explanation
Indices: 107718951--107719020 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
107718941 AAACTTGTAC
*
107718951 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
107718979 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
107719006 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
107719021 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:107719031 original size:27 final size:27
Alignment explanation
Indices: 107718951--107719032 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
107718941 AAACTTGTAC
* * *
107718951 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
107718979 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
107719006 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
107719033 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:107729275 original size:28 final size:29
Alignment explanation
Indices: 107729227--107729289 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
107729217 GTGACTGAGT
*
107729227 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGATACAGATAATTTGTGGCA-TAGC
107729256 CACCAGA-ACAGATAATTTGTGGCATAGC
1 CACCAGATACAGATAATTTGTGGCATAGC
107729284 CACCAG
1 CACCAG
107729290 GACGCTTCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (29 bp):
CACCAGATACAGATAATTTGTGGCATAGC
Found at i:107729441 original size:28 final size:28
Alignment explanation
Indices: 107729394--107729458 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
107729384 AAATTAACCC
*
107729394 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
*
107729422 TAGGGGTATA-ATGGTAATTTTTCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
107729450 TAGGGGTAT
1 TAGGGGTAT
107729459 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.29, C:0.08, G:0.28, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:107736853 original size:27 final size:29
Alignment explanation
Indices: 107736771--107736885 Score: 114
Period size: 27 Copynumber: 4.1 Consensus size: 29
107736761 CAGCATGGTG
* *
107736771 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATATGTGGCAGAGCCA
* * * *
107736798 CCAGATACAGATATTTTGTGGTAGTGCCA
1 CCAGATACAGATAATATGTGGCAGAGCCA
107736827 CCAGA-ACAGA-AATATGTGGCAGAGCCA
1 CCAGATACAGATAATATGTGGCAGAGCCA
* * *
107736854 CCAGA-ACAGATAATTTGTGCCATAGCCA
1 CCAGATACAGATAATATGTGGCAGAGCCA
107736882 CCAG
1 CCAG
107736886 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
27 34 0.47
28 24 0.33
29 14 0.19
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (29 bp):
CCAGATACAGATAATATGTGGCAGAGCCA
Found at i:107736881 original size:28 final size:28
Alignment explanation
Indices: 107736796--107736885 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
107736786 GTGACAGAGT
* *
107736796 CACCAGATACAGATATTTTGTGGTAGT-GC
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
* *
107736825 CACCAGAACAGA-AATATGTGGCAGAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
*
107736852 CACCAGAACAGATAATTTGTGCCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
107736880 CACCAG
1 CACCAG
107736886 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:107736882 original size:55 final size:56
Alignment explanation
Indices: 107736771--107736885 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
107736761 CAGCATGGTG
* * **
107736771 CCAGATACAGAAAATGTGACAGAGTCACCAGATACAGATATTTTGTGGTAGTGCCA
1 CCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGTGCCAGTGCCA
*
107736827 CCAGA-ACAGAAATATGTGGCAGAGCCACCAGA-ACAGATAATTTGTGCCA-TAGCCA
1 CCAGATACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATTTGTGCCAGT-GCCA
107736882 CCAG
1 CCAG
107736886 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (56 bp):
CCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGTGCCAGTGCCA
Found at i:107737037 original size:28 final size:28
Alignment explanation
Indices: 107736990--107737054 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
107736980 AAAATTAACC
* *
107736990 TAGGGGTATAGAGGTCATTTTGCATATA
1 TAGGGGTATAGAGGTAATTTTGCATACA
107737018 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
107737046 TAGGGGTAT
1 TAGGGGTAT
107737055 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:107741700 original size:57 final size:57
Alignment explanation
Indices: 107741628--107741742 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
107741618 GTGAGCAAGC
*
107741628 CCACTTCACAGCCGTGTGAGCATTACATATATGGTTACGGTTACAGATACAAGCACA
1 CCACTTCACAGCCGTGTGAGCATTACAGATATGGTTACGGTTACAGATACAAGCACA
* *
107741685 CCACTTCACAGCCGTGTGAGCATTATAGATATGGTTACGGTTGCAGATACAAGCACA
1 CCACTTCACAGCCGTGTGAGCATTACAGATATGGTTACGGTTACAGATACAAGCACA
107741742 C
1 C
107741743 TTTGTGTAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (57 bp):
CCACTTCACAGCCGTGTGAGCATTACAGATATGGTTACGGTTACAGATACAAGCACA
Found at i:107742683 original size:35 final size:35
Alignment explanation
Indices: 107742624--107742703 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 35
107742614 GATATCAGTT
* *
107742624 AGATACAG-TCTTAGGCCTAAGCCCATTACAAATTC
1 AGATACAGAT-TTGGGCCTAAGCCCATTACAAATAC
* * * *
107742659 AGATGCAGATTTGGGCCTTAGCCCATTTCAGATAC
1 AGATACAGATTTGGGCCTAAGCCCATTACAAATAC
107742694 AGATACAGAT
1 AGATACAGAT
107742704 ATACAGTCAG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
35 36 0.97
36 1 0.03
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (35 bp):
AGATACAGATTTGGGCCTAAGCCCATTACAAATAC
Found at i:107743479 original size:27 final size:27
Alignment explanation
Indices: 107743445--107743500 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
107743435 CGATTTGGGT
107743445 ACACACCTGATATTGATTCGATGTGAA
1 ACACACCTGATATTGATTCGATGTGAA
*
107743472 ACACACCTGATATTGATTTGATGTGAA
1 ACACACCTGATATTGATTCGATGTGAA
107743499 AC
1 AC
107743501 CACTCCCAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (27 bp):
ACACACCTGATATTGATTCGATGTGAA
Found at i:107748929 original size:34 final size:34
Alignment explanation
Indices: 107748890--107748957 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
107748880 CTAAAGGTCC
107748890 CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
1 CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
107748924 CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
1 CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
107748958 GTTTGTGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (34 bp):
CTATGAAATTCGGCTAGGCTGGGGTGTAATTAAA
Found at i:107755412 original size:13 final size:13
Alignment explanation
Indices: 107755394--107755420 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
107755384 TGCTCACCTA
107755394 AGTATAAAACATG
1 AGTATAAAACATG
107755407 AGTATAAAACATG
1 AGTATAAAACATG
107755420 A
1 A
107755421 AATTAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (13 bp):
AGTATAAAACATG
Found at i:107763708 original size:13 final size:13
Alignment explanation
Indices: 107763690--107763714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107763680 TGCTCACCTA
107763690 AGTATAAAACATG
1 AGTATAAAACATG
107763703 AGTATAAAACAT
1 AGTATAAAACAT
107763715 AAAATTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (13 bp):
AGTATAAAACATG
Found at i:107766296 original size:3 final size:3
Alignment explanation
Indices: 107766288--107766317 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
107766278 ATAAAAGTAA
107766288 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
107766318 TAAAAGTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:107768873 original size:63 final size:63
Alignment explanation
Indices: 107768774--107768904 Score: 253
Period size: 63 Copynumber: 2.1 Consensus size: 63
107768764 CTCGACTTAC
*
107768774 ATCAATTTCGCATAGTCATGGTGGTTCAAGGAGTTGACACTTCTCATTCCTGCTATCAATCTT
1 ATCAATTTCGCATAGTCATGGTGGTTCAAAGAGTTGACACTTCTCATTCCTGCTATCAATCTT
107768837 ATCAATTTCGCATAGTCATGGTGGTTCAAAGAGTTGACACTTCTCATTCCTGCTATCAATCTT
1 ATCAATTTCGCATAGTCATGGTGGTTCAAAGAGTTGACACTTCTCATTCCTGCTATCAATCTT
107768900 ATCAA
1 ATCAA
107768905 AATAAGGTTT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (63 bp):
ATCAATTTCGCATAGTCATGGTGGTTCAAAGAGTTGACACTTCTCATTCCTGCTATCAATCTT
Found at i:107773189 original size:59 final size:59
Alignment explanation
Indices: 107773097--107773218 Score: 244
Period size: 59 Copynumber: 2.1 Consensus size: 59
107773087 ATTGATTAGT
107773097 TAAAATGGTTGAATTATATGGTATGTTATGTCTATGTTTTGATGGGTTTTGGTTGCTTA
1 TAAAATGGTTGAATTATATGGTATGTTATGTCTATGTTTTGATGGGTTTTGGTTGCTTA
107773156 TAAAATGGTTGAATTATATGGTATGTTATGTCTATGTTTTGATGGGTTTTGGTTGCTTA
1 TAAAATGGTTGAATTATATGGTATGTTATGTCTATGTTTTGATGGGTTTTGGTTGCTTA
107773215 TAAA
1 TAAA
107773219 TGACTTGAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 63 1.00
ACGTcount: A:0.24, C:0.03, G:0.25, T:0.48
Consensus pattern (59 bp):
TAAAATGGTTGAATTATATGGTATGTTATGTCTATGTTTTGATGGGTTTTGGTTGCTTA
Found at i:107775151 original size:30 final size:30
Alignment explanation
Indices: 107775110--107775166 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
107775100 ACAGCCATGA
*
107775110 CACACGGGCATGTGGTCTGCCCGTGTGCCT
1 CACACGGGCATGTGGTCTACCCGTGTGCCT
* *
107775140 CACATGGGCATGTGGTCTACCTGTGTG
1 CACACGGGCATGTGGTCTACCCGTGTG
107775167 GAAGTGCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.12, C:0.28, G:0.33, T:0.26
Consensus pattern (30 bp):
CACACGGGCATGTGGTCTACCCGTGTGCCT
Found at i:107787118 original size:2 final size:2
Alignment explanation
Indices: 107787111--107787137 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107787101 CAAATTATGT
107787111 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
107787138 GAACTGACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107788101 original size:35 final size:35
Alignment explanation
Indices: 107788037--107788205 Score: 117
Period size: 35 Copynumber: 4.8 Consensus size: 35
107788027 AAACTTACCT
* * * *
107788037 ATATGGCCAAATACACAAGGTTCATTATATTATTTC
1 ATATGGCCGAATATACAA-GTTCAATATATCATTTC
* **
107788073 ATATGGCCGAATATATAAGTTCAATATATCATCAC
1 ATATGGCCGAATATACAAGTTCAATATATCATTTC
* ** * * * * *
107788108 ATGTAACCTAATGTTCAAGTTCAATAAAACATTTC
1 ATATGGCCGAATATACAAGTTCAATATATCATTTC
* *
107788143 ATATGGCCGAATATACAAATTCAATATA--ATCTC
1 ATATGGCCGAATATACAAGTTCAATATATCATTTC
* * *
107788176 ACATGTAACTGAATATACAAGTTCAATATA
1 ATATG--GCCGAATATACAAGTTCAATATA
107788206 AGCTCATATG
Statistics
Matches: 100, Mismatches: 31, Indels: 5
0.74 0.23 0.04
Matches are distributed among these distances:
33 8 0.08
35 77 0.77
36 15 0.15
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.33
Consensus pattern (35 bp):
ATATGGCCGAATATACAAGTTCAATATATCATTTC
Found at i:107788198 original size:105 final size:103
Alignment explanation
Indices: 107788080--107788354 Score: 266
Period size: 105 Copynumber: 2.6 Consensus size: 103
107788070 TTCATATGGC
* * * *** * *
107788080 CGAATATATAAGTTCAATATATCATCACATGTAACCTAATGTTCAAGTTCAATAAAACATTTCAT
1 CGAATATACAAGTTCAATATAAC-TCACATGTAACCGAATACACAAGTTCAAT-AAA-ATCTCAC
* *
107788145 ATG-GCCGAATATACAAATTCAATATAATCTCACATGTAA-
63 ATGAGCCAAATATACAAATTCAATATAAGCTCACATGTAAT
* * * *
107788184 CTGAATATACAAGTTCAATATAAGCTCATATGTAATCGATTACACAAGTTCAATATAATCTCACA
1 C-GAATATACAAGTTCAATATAA-CTCACATGTAACCGAATACACAAGTTCAATAAAATCTCACA
*
107788249 TGCAGCCAAATATACAAGTTCAATATAAGCTCACATGTAAT
64 TG-AGCCAAATATACAAATTCAATATAAGCTCACATGTAAT
* * * * * * * *
107788290 CGAATACACAAGTTCAATATAACCTCACATGCAGCTGAATATATAAGTTCAATATAACCTCACAT
1 CGAATATACAAGTTCAATATAA-CTCACATGTAACCGAATACACAAGTTCAATAAAATCTCACAT
107788355 ATACTTACCT
Statistics
Matches: 140, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
103 8 0.06
104 3 0.02
105 127 0.91
106 2 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.29
Consensus pattern (103 bp):
CGAATATACAAGTTCAATATAACTCACATGTAACCGAATACACAAGTTCAATAAAATCTCACATG
AGCCAAATATACAAATTCAATATAAGCTCACATGTAAT
Found at i:107788206 original size:35 final size:35
Alignment explanation
Indices: 107788081--107788354 Score: 236
Period size: 35 Copynumber: 7.8 Consensus size: 35
107788071 TCATATGGCC
*
107788081 GAATATATAAGTTCAATAT-ATCATCACATGTAACCT
1 GAATATACAAGTTCAATATAATC-TCACATGTAA-CT
* * * * * * *
107788117 -AATGTTCAAGTTCAATAAAACATTTCATATG--GCC
1 GAATATACAAGTTCAAT-ATA-ATCTCACATGTAACT
*
107788151 GAATATACAAATTCAATATAATCTCACATGTAACT
1 GAATATACAAGTTCAATATAATCTCACATGTAACT
* *
107788186 GAATATACAAGTTCAATATAAGCTCATATGTAA-T
1 GAATATACAAGTTCAATATAATCTCACATGTAACT
* * * * *
107788220 CGATTACACAAGTTCAATATAATCTCACATGCAGCC
1 -GAATATACAAGTTCAATATAATCTCACATGTAACT
* *
107788256 AAATATACAAGTTCAATATAAGCTCACATGTAA-T
1 GAATATACAAGTTCAATATAATCTCACATGTAACT
* * * *
107788290 CGAATACACAAGTTCAATATAACCTCACATGCAGCT
1 -GAATATACAAGTTCAATATAATCTCACATGTAACT
* *
107788326 GAATATATAAGTTCAATATAACCTCACAT
1 GAATATACAAGTTCAATATAATCTCACAT
107788355 ATACTTACCT
Statistics
Matches: 188, Mismatches: 40, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
33 8 0.04
34 4 0.02
35 166 0.88
36 2 0.01
37 6 0.03
38 2 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (35 bp):
GAATATACAAGTTCAATATAATCTCACATGTAACT
Found at i:107788344 original size:70 final size:70
Alignment explanation
Indices: 107788150--107788354 Score: 311
Period size: 70 Copynumber: 2.9 Consensus size: 70
107788140 TTCATATGGC
* * * * *
107788150 CGAATATACAAATTCAATATAATCTCACATGTAACTGAATATACAAGTTCAATATAAGCTCATAT
1 CGAATACACAAGTTCAATATAATCTCACATGCAGCTGAATATACAAGTTCAATATAAGCTCACAT
107788215 GTAAT
66 GTAAT
* **
107788220 CGATTACACAAGTTCAATATAATCTCACATGCAGCCAAATATACAAGTTCAATATAAGCTCACAT
1 CGAATACACAAGTTCAATATAATCTCACATGCAGCTGAATATACAAGTTCAATATAAGCTCACAT
107788285 GTAAT
66 GTAAT
* * *
107788290 CGAATACACAAGTTCAATATAACCTCACATGCAGCTGAATATATAAGTTCAATATAACCTCACAT
1 CGAATACACAAGTTCAATATAATCTCACATGCAGCTGAATATACAAGTTCAATATAAGCTCACAT
107788355 ATACTTACCT
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 121 1.00
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.28
Consensus pattern (70 bp):
CGAATACACAAGTTCAATATAATCTCACATGCAGCTGAATATACAAGTTCAATATAAGCTCACAT
GTAAT
Found at i:107794738 original size:23 final size:23
Alignment explanation
Indices: 107794711--107794762 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
107794701 TTCAAAACTT
107794711 TAAATCACATCAATTATTATAAC
1 TAAATCACATCAATTATTATAAC
107794734 TAAATCACATCAATTATTATAAC
1 TAAATCACATCAATTATTATAAC
107794757 TAAATC
1 TAAATC
107794763 CATTTGCGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATCACATCAATTATTATAAC
Found at i:107795932 original size:35 final size:35
Alignment explanation
Indices: 107795868--107796036 Score: 112
Period size: 35 Copynumber: 4.8 Consensus size: 35
107795858 AAACTTACCT
* * * *
107795868 ATATGGCCAAATACACAAGGTTCATTATATTATTTC
1 ATATGGCCGAATATACAA-GTTCAATATATCATTTC
*
107795904 ATATGGCCGAATATATAAGTTCAATATATCA-TT-
1 ATATGGCCGAATATACAAGTTCAATATATCATTTC
* * * * * * *
107795937 ACATGGAACCTAATGTTCAAGTTCAATAAAACATCTC
1 ATATGG--CCGAATATACAAGTTCAATATATCATTTC
* *
107795974 ATATGGCCGAATATACAAATTCAATATA--ATCTC
1 ATATGGCCGAATATACAAGTTCAATATATCATTTC
* * *
107796007 ACATGTAACCGAATGTACAAGTTCAATATA
1 ATATG--GCCGAATATACAAGTTCAATATA
107796037 AGCTGACATG
Statistics
Matches: 104, Mismatches: 23, Indels: 13
0.74 0.16 0.09
Matches are distributed among these distances:
33 14 0.13
34 2 0.02
35 67 0.64
36 16 0.15
37 5 0.05
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.31
Consensus pattern (35 bp):
ATATGGCCGAATATACAAGTTCAATATATCATTTC
Found at i:107796037 original size:35 final size:35
Alignment explanation
Indices: 107795910--107796185 Score: 282
Period size: 35 Copynumber: 7.9 Consensus size: 35
107795900 TTTCATATGG
* * * * *
107795910 CCGAATATATAAGTTCAATATATCATTACATGGAA
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* * * * * * * **
107795945 CCTAATGTTCAAGTTCAATAAAACATCTCATATGG
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* *
107795980 CCGAATATACAAATTCAATATAATCTCACATGTAA
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* * *
107796015 CCGAATGTACAAGTTCAATATAAGCTGACATGTAA
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* * * * *
107796050 TCGAATACACAAGTTCAATGTAACCTCACATGCAG
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
*
107796085 CCGAATATACAAGTTCAATATAAGCTCACATGTAA
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
* ** * *
107796120 TCGAATCCACAAGTTCAATATAACCTCACATGCAG
1 CCGAATATACAAGTTCAATATAACCTCACATGTAA
107796155 CCGAATATACAAGTTCAATATAACCTCACAT
1 CCGAATATACAAGTTCAATATAACCTCACAT
107796186 ATACTTACCT
Statistics
Matches: 191, Mismatches: 50, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 191 1.00
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.27
Consensus pattern (35 bp):
CCGAATATACAAGTTCAATATAACCTCACATGTAA
Found at i:107796175 original size:70 final size:70
Alignment explanation
Indices: 107795981--107796185 Score: 320
Period size: 70 Copynumber: 2.9 Consensus size: 70
107795971 CTCATATGGC
* * * * * * *
107795981 CGAATATACAAATTCAATATAATCTCACATGTAACCGAATGTACAAGTTCAATATAAGCTGACAT
1 CGAATACACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAATATAAGCTCACAT
107796046 GTAAT
66 GTAAT
*
107796051 CGAATACACAAGTTCAATGTAACCTCACATGCAGCCGAATATACAAGTTCAATATAAGCTCACAT
1 CGAATACACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAATATAAGCTCACAT
107796116 GTAAT
66 GTAAT
* *
107796121 CGAATCCACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAATATAACCTCACAT
1 CGAATACACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAATATAAGCTCACAT
107796186 ATACTTACCT
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 124 1.00
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.25
Consensus pattern (70 bp):
CGAATACACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAATATAAGCTCACAT
GTAAT
Found at i:107801574 original size:12 final size:13
Alignment explanation
Indices: 107801557--107801594 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
107801547 ATCCTAAAAT
107801557 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
107801569 ATTAAGAACACATA
1 ATTAAGAACA-AGA
107801583 ATTAAGAACAAG
1 ATTAAGAACAAG
107801595 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:107807396 original size:16 final size:18
Alignment explanation
Indices: 107807366--107807402 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
107807356 GCTAGATAAA
*
107807366 AAAATGAATACTACA-AT
1 AAAATGAATAATACATAT
107807383 AAAA-GAATAATACATAT
1 AAAATGAATAATACATAT
107807400 AAA
1 AAA
107807403 GCAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.65, C:0.08, G:0.05, T:0.22
Consensus pattern (18 bp):
AAAATGAATAATACATAT
Found at i:107807930 original size:20 final size:20
Alignment explanation
Indices: 107807902--107807940 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
107807892 TTAATAATAA
* *
107807902 TAATAATAATATATATAATG
1 TAATAATAAAAAATATAATG
*
107807922 TAATCATAAAAAATATAAT
1 TAATAATAAAAAATATAAT
107807941 TGGCGATACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
TAATAATAAAAAATATAATG
Found at i:107808107 original size:35 final size:35
Alignment explanation
Indices: 107808070--107808139 Score: 90
Period size: 33 Copynumber: 2.0 Consensus size: 35
107808060 AATAATTAAT
107808070 AAATATATAATATATGTGAGAATATAATAATATATAA
1 AAATA-ATAATA-ATGTGAGAATATAATAATATATAA
* *
107808107 AAATAATAATAATTTGAGGA-A-AATAATATATAA
1 AAATAATAATAATGTGAGAATATAATAATATATAA
107808140 TGTAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 12 0.39
34 1 0.03
35 7 0.23
36 6 0.19
37 5 0.16
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.33
Consensus pattern (35 bp):
AAATAATAATAATGTGAGAATATAATAATATATAA
Found at i:107808133 original size:36 final size:36
Alignment explanation
Indices: 107808070--107808138 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
107808060 AATAATTAAT
*
107808070 AAATATATAATATATGTGAGAATATAATAATATATAA
1 AAATATATAATATATGTGAGAAAATAAT-ATATATAA
*
107808107 AAATA-ATAATA-ATTTGAGGAAAATAATATATA
1 AAATATATAATATATGTGA-GAAAATAATATATA
107808139 ATGTAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 10 0.34
36 14 0.48
37 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (36 bp):
AAATATATAATATATGTGAGAAAATAATATATATAA
Found at i:107808225 original size:15 final size:16
Alignment explanation
Indices: 107808183--107808227 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
107808173 TGTATAAAAG
*
107808183 TAAAAATAAAT-CAAA
1 TAAAAATAAATAGAAA
*
107808198 TAAAAATATATAGAAA
1 TAAAAATAAATAGAAA
107808214 TAAAAA-AAATAGAA
1 TAAAAATAAATAGAA
107808228 CCAAATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 17 0.65
16 9 0.35
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.20
Consensus pattern (16 bp):
TAAAAATAAATAGAAA
Found at i:107809745 original size:83 final size:83
Alignment explanation
Indices: 107809637--107810137 Score: 860
Period size: 83 Copynumber: 6.0 Consensus size: 83
107809627 TTCGATTTGT
* * * *
107809637 AAGGATGTCAAATCATCTTAAGTCTGTTTGAGAACATTTGAGAGTTATATCTGCAATGTCCTTGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
107809702 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
107809720 AAGGATGCCAAGCCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
107809785 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
107809803 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT-CTTCG
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTT-G
107809867 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
* * * *
107809886 AAGGATCCCAAACCATCTTCAGTCTGTTTGAGAACATTTGAGAGTCATATCTGTAAAGTCCTTGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
107809951 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
107809969 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
*
107810034 TTTGTTCCTTGTAAGCAT
66 TTTGTTCCTTGTAAGCAC
* *
107810052 AAGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
*
107810117 TTTGTTCCTTGTAAACAC
66 TTTGTTCCTTGTAAGCAC
107810135 AAG
1 AAG
107810138 AATATCAAAT
Statistics
Matches: 397, Mismatches: 19, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
82 3 0.01
83 391 0.98
84 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGA
TTTGTTCCTTGTAAGCAC
Found at i:107810336 original size:83 final size:83
Alignment explanation
Indices: 107810209--107810422 Score: 356
Period size: 83 Copynumber: 2.6 Consensus size: 83
107810199 TGAAAACGTC
* *
107810209 TGAGAGTCATATCTGCAATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTC
1 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTC
*
107810274 AGTCTGTTTGAGAACATT
66 AGTCTGTTGGAGAACATT
* * *
107810292 TGAGAGTCATATCTGCAATATCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG
1 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTC
107810357 AGTCTGTTGGAGAACATT
66 AGTCTGTTGGAGAACATT
* *
107810375 TGAGAGTCATATCTGCAATGCCCTCGATTTGTTCCTTGTAAACACAAG
1 TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAG
107810423 AATATCAAAT
Statistics
Matches: 122, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 122 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (83 bp):
TGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTC
AGTCTGTTGGAGAACATT
Found at i:107810434 original size:285 final size:285
Alignment explanation
Indices: 107809924--107810557 Score: 1072
Period size: 285 Copynumber: 2.2 Consensus size: 285
107809914 TGAGAACATT
* *
107809924 TGAGAGTCATATCTGTAAAGTCCTT-GATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
1 TGAGAGTCATATCTGTAATGT-CTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * *
107809988 GAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCATA
65 CAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGATTTGTTCCTTGTAAGCACA
*
107810053 AGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGAT
130 AGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGCCCTCGAT
107810118 TTGTTCCTTGTAAACACAAGAATATCAAATCATCTTAGATCTGCTTTAGTATAAACATCTGAAGG
195 TTGTTCCTTGTAAACACAAGAATATCAAATCATCTTAGATCTGCTTTAGTATAAACATCTGAAGG
*
107810183 TTAGATCTGCTATATTTGAAAACGTC
260 TTAGATATGCTATATTTGAAAACGTC
* * *
107810209 TGAGAGTCATATCTGCAATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATCCCAAACCATCTTC
1 TGAGAGTCATATCTGTAATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTC
107810274 AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGATTTGTTCCTTGTAAGCACAA
66 AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGATTTGTTCCTTGTAAGCACAA
107810339 GGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGCCCTCGATT
131 GGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGCCCTCGATT
*
107810404 TGTTCCTTGTAAACACAAGAATATCAAATCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGT
196 TGTTCCTTGTAAACACAAGAATATCAAATCATCTTAGATCTGCTTTAGTATAAACATCTGAAGGT
* *
107810469 TAGATATGCTATATTTGAGAATGTC
261 TAGATATGCTATATTTGAAAACGTC
* * * * * * *
107810494 TGAGAGTCAAATCTGTTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTT
1 TGAGAGTCATATCTGTAATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
107810558 GGATCTGCTT
Statistics
Matches: 326, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
284 3 0.01
285 323 0.99
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (285 bp):
TGAGAGTCATATCTGTAATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTC
AGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGATTTGTTCCTTGTAAGCACAA
GGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGCCCTCGATT
TGTTCCTTGTAAACACAAGAATATCAAATCATCTTAGATCTGCTTTAGTATAAACATCTGAAGGT
TAGATATGCTATATTTGAAAACGTC
Found at i:107810583 original size:119 final size:119
Alignment explanation
Indices: 107810375--107810597 Score: 338
Period size: 119 Copynumber: 1.9 Consensus size: 119
107810365 GGAGAACATT
* *
107810375 TGAGAGTCATATCTGCAATGCCCTCGATTTGTTCCTTGTAAACACAAGAATATCAAATCATCTTG
1 TGAGAGTCAAATCTGCAATGCCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
* *
107810440 GATCTGCTTTAGTATAAACATCTGAAGGTTAGATATGCTATATTTGAGAATGTC
66 GATCTGCTTCAGCATAAACATCTGAAGGTTAGATATGCTATATTTGAGAATGTC
** * *
107810494 TGAGAGTCAAATCTGTTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTG
1 TGAGAGTCAAATCTGCAATGCCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
** * *
107810559 GATCTGCTTCAGCATAAATGTCTGAAGTTTAGATCTGCT
66 GATCTGCTTCAGCATAAACATCTGAAGGTTAGATATGCT
107810598 GTCTTCAATT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
119 92 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (119 bp):
TGAGAGTCAAATCTGCAATGCCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
GATCTGCTTCAGCATAAACATCTGAAGGTTAGATATGCTATATTTGAGAATGTC
Found at i:107820550 original size:33 final size:33
Alignment explanation
Indices: 107820512--107820579 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
107820502 GTAAGGTAAG
107820512 TCTCCGTAATTACCGTAGAATAACTGTTTAGTC
1 TCTCCGTAATTACCGTAGAATAACTGTTTAGTC
*
107820545 TCTCCGTAATTACCGTAGAATAATTGTTTAGTC
1 TCTCCGTAATTACCGTAGAATAACTGTTTAGTC
107820578 TC
1 TC
107820580 GTTGCCCCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (33 bp):
TCTCCGTAATTACCGTAGAATAACTGTTTAGTC
Found at i:107822566 original size:20 final size:20
Alignment explanation
Indices: 107822538--107822576 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
107822528 GATTTAATAA
* *
107822538 TAATAATAATATATATAATG
1 TAATAATAAAAAATATAATG
*
107822558 TAATCATAAAAAATATAAT
1 TAATAATAAAAAATATAAT
107822577 TGGCGATACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
TAATAATAAAAAATATAATG
Found at i:107822768 original size:36 final size:36
Alignment explanation
Indices: 107822705--107822773 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
107822695 TATAATTAAT
*
107822705 AAATATATAATATATGTGAGAATATAATAATATATAA
1 AAATATATAATATATGTGAGAAAATAAT-ATATATAA
*
107822742 AAATA-ATAATA-ATTTGAGGAAAATAATATATA
1 AAATATATAATATATGTGA-GAAAATAATATATA
107822774 ATAGTAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 10 0.34
36 14 0.48
37 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (36 bp):
AAATATATAATATATGTGAGAAAATAATATATATAA
Found at i:107829455 original size:12 final size:13
Alignment explanation
Indices: 107829438--107829475 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
107829428 ATCCCGGAAT
107829438 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
107829450 ATTAAGAACACATA
1 ATTAAGAACA-AGA
107829464 ATTAAGAACAAG
1 ATTAAGAACAAG
107829476 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:107830502 original size:13 final size:13
Alignment explanation
Indices: 107830484--107830520 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
107830474 GCCGTGTGCC
* *
107830484 ACACACGGCTGAG
1 ACACACGCCCGAG
107830497 ACACACGCCCGAG
1 ACACACGCCCGAG
107830510 ACACACGCCCG
1 ACACACGCCCG
107830521 TTTCTTTGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.30, C:0.43, G:0.24, T:0.03
Consensus pattern (13 bp):
ACACACGCCCGAG
Found at i:107832307 original size:25 final size:25
Alignment explanation
Indices: 107832255--107832367 Score: 106
Period size: 25 Copynumber: 4.6 Consensus size: 25
107832245 ATACATGTAT
*
107832255 GCTCATACGAGCAGTAA-A-CGGTAA
1 GCTCATACGAGCTG-AATATCGGTAA
*
107832279 GCTCATCCGAGCTGAATATCGGTAA
1 GCTCATACGAGCTGAATATCGGTAA
107832304 GCTCATACGAGCTGCAA-ATCGGTAA
1 GCTCATACGAGCTG-AATATCGGTAA
* * * * * *
107832329 GGTCCTCCAAGCTAAATATCAGTAA
1 GCTCATACGAGCTGAATATCGGTAA
*
107832354 GCTCTTACGAGCTG
1 GCTCATACGAGCTG
107832368 TAGTGAGTTC
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
23 2 0.03
24 15 0.21
25 52 0.73
26 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (25 bp):
GCTCATACGAGCTGAATATCGGTAA
Found at i:107832347 original size:50 final size:49
Alignment explanation
Indices: 107832255--107832367 Score: 145
Period size: 50 Copynumber: 2.3 Consensus size: 49
107832245 ATACATGTAT
* * * * *
107832255 GCTCATACGAGCAGTAAACGGTAAGCTCATCCGAGCTGAATATCGGTAA
1 GCTCATACGAGCTGCAAACGGTAAGCTCATCCAAGCTAAATATCAGTAA
* *
107832304 GCTCATACGAGCTGCAAATCGGTAAGGTCCTCCAAGCTAAATATCAGTAA
1 GCTCATACGAGCTGCAAA-CGGTAAGCTCATCCAAGCTAAATATCAGTAA
*
107832354 GCTCTTACGAGCTG
1 GCTCATACGAGCTG
107832368 TAGTGAGTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 16 0.29
50 39 0.71
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (49 bp):
GCTCATACGAGCTGCAAACGGTAAGCTCATCCAAGCTAAATATCAGTAA
Found at i:107835306 original size:18 final size:18
Alignment explanation
Indices: 107835280--107835329 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 18
107835270 GATCGTAAAG
*
107835280 CTGCAAGCTCACTCAAGA
1 CTGCGAGCTCACTCAAGA
* *
107835298 CTGCGAGCTCTC-CAATA
1 CTGCGAGCTCACTCAAGA
*
107835315 GTGCGAGCTCA-TCAA
1 CTGCGAGCTCACTCAA
107835330 AGCTGCAAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 16 0.62
18 10 0.38
ACGTcount: A:0.28, C:0.32, G:0.20, T:0.20
Consensus pattern (18 bp):
CTGCGAGCTCACTCAAGA
Found at i:107836226 original size:18 final size:20
Alignment explanation
Indices: 107836205--107836245 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
107836195 TATTTTGATA
107836205 TTTTAATAA-AT-TTAAAAT
1 TTTTAATAATATATTAAAAT
*
107836223 TTTTAATAATGTATTAAAAT
1 TTTTAATAATATATTAAAAT
107836243 TTT
1 TTT
107836246 CACCAATGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 1 0.05
20 10 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
TTTTAATAATATATTAAAAT
Found at i:107849891 original size:21 final size:21
Alignment explanation
Indices: 107849866--107849919 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
107849856 GTAGTATACT
107849866 ACACATAAAGTGCCTAAAACG
1 ACACATAAAGTGCCTAAAACG
* * *
107849887 ACACATGAGGTGCCTAAAACT
1 ACACATAAAGTGCCTAAAACG
*
107849908 ACACAAAAAGTG
1 ACACATAAAGTG
107849920 TCTGATCGGT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.46, C:0.22, G:0.17, T:0.15
Consensus pattern (21 bp):
ACACATAAAGTGCCTAAAACG
Found at i:107853473 original size:2 final size:2
Alignment explanation
Indices: 107853466--107853499 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
107853456 CATAGGATAA
107853466 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107853500 TATGGCTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:107856525 original size:17 final size:17
Alignment explanation
Indices: 107856505--107856555 Score: 54
Period size: 16 Copynumber: 3.0 Consensus size: 17
107856495 CAGAAGTCTT
107856505 CAAAAAATAAATAAAAA
1 CAAAAAATAAATAAAAA
107856522 C-AAAAATAAA-AACAAA
1 CAAAAAATAAATAA-AAA
107856538 -AATAAAATAAAATAAAAA
1 CAA-AAAAT-AAATAAAAA
107856556 ATAAATGGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
15 2 0.07
16 13 0.45
17 6 0.21
18 6 0.21
19 2 0.07
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (17 bp):
CAAAAAATAAATAAAAA
Found at i:107856528 original size:12 final size:12
Alignment explanation
Indices: 107856513--107856544 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
107856503 TTCAAAAAAT
107856513 AAATAAAAACAA
1 AAATAAAAACAA
107856525 AAATAAAAACAA
1 AAATAAAAACAA
107856537 AAATAAAA
1 AAATAAAA
107856545 TAAAATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.84, C:0.06, G:0.00, T:0.09
Consensus pattern (12 bp):
AAATAAAAACAA
Found at i:107856556 original size:12 final size:12
Alignment explanation
Indices: 107856506--107856560 Score: 57
Period size: 12 Copynumber: 4.8 Consensus size: 12
107856496 AGAAGTCTTC
107856506 AAAAAAT-AAAT
1 AAAAAATAAAAT
107856517 AAAAACA-AAAAT
1 AAAAA-ATAAAAT
107856529 AAAAACA-AAAAT
1 AAAAA-ATAAAAT
107856541 --AAAATAAAAT
1 AAAAAATAAAAT
107856551 AAAAAATAAA
1 AAAAAATAAA
107856561 TGGACTCAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
9 1 0.03
10 8 0.21
11 5 0.13
12 25 0.64
ACGTcount: A:0.84, C:0.04, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:107856556 original size:17 final size:17
Alignment explanation
Indices: 107856508--107856560 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
107856498 AAGTCTTCAA
107856508 AAAAT-AAATAAAAACA-
1 AAAATAAAATAAAAA-AT
107856524 AAAATAAAA-ACAAAAAT
1 AAAATAAAATA-AAAAAT
107856541 AAAATAAAATAAAAAAT
1 AAAATAAAATAAAAAAT
107856558 AAA
1 AAA
107856561 TGGACTCAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
16 7 0.21
17 25 0.76
18 1 0.03
ACGTcount: A:0.83, C:0.04, G:0.00, T:0.13
Consensus pattern (17 bp):
AAAATAAAATAAAAAAT
Found at i:107861562 original size:18 final size:18
Alignment explanation
Indices: 107861539--107861573 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
107861529 CAGAAGCAAT
* *
107861539 TAAAAATAAAAATTAAAC
1 TAAAAACAAAAAGTAAAC
107861557 TAAAAACAAAAAGTAAA
1 TAAAAACAAAAAGTAAA
107861574 TTGCAATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17
Consensus pattern (18 bp):
TAAAAACAAAAAGTAAAC
Found at i:107869392 original size:4 final size:4
Alignment explanation
Indices: 107869385--107869415 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
107869375 AAAAAAAAAA
107869385 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
107869416 TTAGTAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:107870986 original size:40 final size:40
Alignment explanation
Indices: 107870941--107871020 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
107870931 ACCTAGAATC
107870941 AGTTTTTTTTAGTCTTAAAAGGGATAAAACACAAATCAGG
1 AGTTTTTTTTAGTCTTAAAAGGGATAAAACACAAATCAGG
*
107870981 AGTTTTTTTTAGTCTTAAAAGGGATAAAACATAAATCAGG
1 AGTTTTTTTTAGTCTTAAAAGGGATAAAACACAAATCAGG
107871021 GATTTCTACA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (40 bp):
AGTTTTTTTTAGTCTTAAAAGGGATAAAACACAAATCAGG
Found at i:107874469 original size:35 final size:35
Alignment explanation
Indices: 107874430--107874556 Score: 155
Period size: 35 Copynumber: 3.6 Consensus size: 35
107874420 CATGGCAAAG
107874430 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
* * *
107874465 TGTGAAATGTTGGTATGGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
** * ** * *
107874500 TAAGAAACGTAGGTATGGCATTTCCCATACCGATT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
*
107874535 TGTGAAATGTAGGTATGGTATT
1 TGTGAAACGTAGGTATGGTATT
107874557 TCAATGAGGA
Statistics
Matches: 76, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 76 1.00
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
Found at i:107878167 original size:28 final size:28
Alignment explanation
Indices: 107878127--107878182 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
107878117 GATACATGAT
**
107878127 AGATTCCTTTAAAAGTTTTTTAAACTAC
1 AGATTCCACTAAAAGTTTTTTAAACTAC
*
107878155 AGATTCCACTAAAATTTTTTTAAACTAC
1 AGATTCCACTAAAAGTTTTTTAAACTAC
107878183 TTCCCAAGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.41
Consensus pattern (28 bp):
AGATTCCACTAAAAGTTTTTTAAACTAC
Found at i:107882082 original size:43 final size:43
Alignment explanation
Indices: 107881996--107882180 Score: 178
Period size: 43 Copynumber: 4.3 Consensus size: 43
107881986 AGGCTGCCAT
* * * * **
107881996 AGAACATGACCTTTAGTGGCACTTTTC-CTGCAAATGTTGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCTC-ACAAACGCCGCTAA
* * *
107882039 AGACCATGACCTTTAGCGGCGCTTTTCTCACAATCGCCACTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAA
* * * * *
107882082 AGAATATGACCTTTAGAGGCG-TTTTTTCAAAAACGCCGCTAT
1 AGAACATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAA
** * *
107882124 AGAA-AAAACCTTTAGCGGAGCTTTTCCCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAA
107882166 AGAACATGACCTTTA
1 AGAACATGACCTTTA
107882181 AAAAATATAT
Statistics
Matches: 112, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
41 12 0.11
42 41 0.37
43 58 0.52
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAA
Found at i:107882161 original size:42 final size:43
Alignment explanation
Indices: 107882047--107882169 Score: 142
Period size: 42 Copynumber: 2.9 Consensus size: 43
107882037 AAAGACCATG
* * **
107882047 ACCTTTAGCGGCGCTTTTCTCACAATCGCCACTAAAGAATATG
1 ACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAATAAA
* * * *
107882090 ACCTTTAGAGGCG-TTTTTTCAAAAACGCCGCTATAGAA-AAA
1 ACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAATAAA
* *
107882131 ACCTTTAGCGGAGCTTTTCCCACAAACGCCGCTAAAGAA
1 ACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAA
107882170 CATGACCTTT
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
41 12 0.18
42 41 0.63
43 12 0.18
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGAATAAA
Found at i:107882723 original size:11 final size:11
Alignment explanation
Indices: 107882707--107882734 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
107882697 TTGGCAGATA
107882707 AATCTAGTTAC
1 AATCTAGTTAC
107882718 AATCTAGTTAC
1 AATCTAGTTAC
107882729 AATCTA
1 AATCTA
107882735 TTATCCACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (11 bp):
AATCTAGTTAC
Found at i:107885969 original size:17 final size:18
Alignment explanation
Indices: 107885938--107886002 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
107885928 TTCACTCTCT
107885938 TCTTCTT-TCTCCTCCCCC
1 TCTTCTTCT-TCCTCCCCC
*
107885956 TCTTC-TCTTCCTCCTCC
1 TCTTCTTCTTCCTCCCCC
* **
107885973 TCTTCTTCTTCTTCTTCC
1 TCTTCTTCTTCCTCCCCC
107885991 TCGTTCTTCTTC
1 TC-TTCTTCTTC
107886003 TTTTTAACTT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
17 14 0.34
18 18 0.44
19 9 0.22
ACGTcount: A:0.00, C:0.46, G:0.02, T:0.52
Consensus pattern (18 bp):
TCTTCTTCTTCCTCCCCC
Found at i:107886529 original size:30 final size:31
Alignment explanation
Indices: 107886479--107886544 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 31
107886469 CTATTGCGGC
*
107886479 TTTTTCACCAAAAACGCCACTATAGCTCAAA
1 TTTTTCACCAAAAACACCACTATAGCTCAAA
* *
107886510 TTTTT-ACTAAAAACACCACTATAGCTCAAC
1 TTTTTCACCAAAAACACCACTATAGCTCAAA
107886540 TTTTT
1 TTTTT
107886545 GTGGCGTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 27 0.84
31 5 0.16
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (31 bp):
TTTTTCACCAAAAACACCACTATAGCTCAAA
Found at i:107886764 original size:18 final size:17
Alignment explanation
Indices: 107886741--107886790 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
107886731 TTTTTATTTT
107886741 TTATTTTTAAATTTTAAA
1 TTATTTTTAAATTTT-AA
*
107886759 TTATTTTTGAATATTTTTA
1 TTATTTTT-AA-ATTTTAA
*
107886778 TAATTTTTAAATT
1 TTATTTTTAAATT
107886791 AACATATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 3 0.11
18 10 0.36
19 10 0.36
20 5 0.18
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TTATTTTTAAATTTTAA
Found at i:107887447 original size:21 final size:20
Alignment explanation
Indices: 107887413--107887464 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 20
107887403 AACCCCAAAC
* *
107887413 ACCA-AAACCCAAATCTTAG
1 ACCATAAACCTAAATCCTAG
107887432 ACCATAAATCCTAAATCCTAG
1 ACCATAAA-CCTAAATCCTAG
*
107887453 ACTATAAACCTA
1 ACCATAAACCTA
107887465 CACCCAAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 4 0.14
20 7 0.25
21 17 0.61
ACGTcount: A:0.46, C:0.29, G:0.04, T:0.21
Consensus pattern (20 bp):
ACCATAAACCTAAATCCTAG
Found at i:107887847 original size:7 final size:7
Alignment explanation
Indices: 107887837--107888011 Score: 77
Period size: 7 Copynumber: 24.7 Consensus size: 7
107887827 CCTATCCCTA
107887837 TAAACCT
1 TAAACCT
* *
107887844 TAAATCA
1 TAAACCT
*
107887851 TAAACCC
1 TAAACCT
*
107887858 TAAACTAT
1 TAAAC-CT
*
107887866 TAACCCT
1 TAAACCT
107887873 T-AACCAT
1 TAAACC-T
*
107887880 TAACCCT
1 TAAACCT
107887887 TAAACCT
1 TAAACCT
*
107887894 TAAACCA
1 TAAACCT
*
107887901 TAAACCA
1 TAAACCT
*
107887908 TAAACCA
1 TAAACCT
* *
107887915 TAATCCC
1 TAAACCT
*
107887922 TAAATCCA
1 TAAA-CCT
* *
107887930 TAATCCA
1 TAAACCT
107887937 TAAACCT
1 TAAACCT
*
107887944 TAAA-AT
1 TAAACCT
*
107887950 GT-AACTCC
1 -TAAAC-CT
*
107887958 TAAAGCT
1 TAAACCT
*
107887965 TAAACCC
1 TAAACCT
*
107887972 TAAACCA
1 TAAACCT
* *
107887979 TATACCC
1 TAAACCT
*
107887986 TAAACCC
1 TAAACCT
*
107887993 TAAACCC
1 TAAACCT
107888000 TAAACCT
1 TAAACCT
107888007 TAAAC
1 TAAAC
107888012 TATAATGATA
Statistics
Matches: 129, Mismatches: 31, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
6 6 0.05
7 109 0.84
8 14 0.11
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (7 bp):
TAAACCT
Found at i:107887911 original size:21 final size:21
Alignment explanation
Indices: 107887849--107888016 Score: 95
Period size: 21 Copynumber: 7.9 Consensus size: 21
107887839 AACCTTAAAT
* * *
107887849 CATAAACCCTAAACTATTAAC
1 CATAAACCTTAAACCATAAAC
* * * *
107887870 CCTTAACCATTAACCCTTAAAC
1 CATAAACC-TTAAACCATAAAC
* *
107887892 CTTAAACCATAAACCATAAAC
1 CATAAACCTTAAACCATAAAC
* * *
107887913 CATAATCCCTAAATCCATAATC
1 CATAAACCTTAAA-CCATAAAC
***
107887935 CATAAACCTTAAAATGT-AAC
1 CATAAACCTTAAACCATAAAC
* * *
107887955 TCCTAAAGCTTAAACCCTAAAC
1 -CATAAACCTTAAACCATAAAC
* * *
107887977 CATATACCCTAAACCCTAAAC
1 CATAAACCTTAAACCATAAAC
* *
107887998 CCTAAACCTTAAACTATAA
1 CATAAACCTTAAACCATAA
107888017 TGATAATTAA
Statistics
Matches: 107, Mismatches: 36, Indels: 8
0.71 0.24 0.05
Matches are distributed among these distances:
20 2 0.02
21 70 0.65
22 35 0.33
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (21 bp):
CATAAACCTTAAACCATAAAC
Found at i:107888010 original size:14 final size:14
Alignment explanation
Indices: 107887837--107888011 Score: 97
Period size: 14 Copynumber: 12.4 Consensus size: 14
107887827 CCTATCCCTA
* * *
107887837 TAAACCTTAAATCA
1 TAAACCCTAAACCT
107887851 TAAACCCTAAA-CT
1 TAAACCCTAAACCT
* *
107887864 ATTAACCCTTAACCAT
1 -TAAACCCTAAACC-T
107887880 T-AACCCTTAAACCT
1 TAAACCC-TAAACCT
* *
107887894 TAAACCATAAACCA
1 TAAACCCTAAACCT
* * *
107887908 TAAACCATAATCCC
1 TAAACCCTAAACCT
* * *
107887922 TAAATCCATAATCCA
1 TAAA-CCCTAAACCT
* *
107887937 TAAACCTTAAA-AT
1 TAAACCCTAAACCT
*
107887950 GT-AACTCCTAAAGCT
1 -TAAAC-CCTAAACCT
*
107887965 TAAACCCTAAACCA
1 TAAACCCTAAACCT
* *
107887979 TATACCCTAAACCC
1 TAAACCCTAAACCT
107887993 TAAACCCTAAACCT
1 TAAACCCTAAACCT
107888007 TAAAC
1 TAAAC
107888012 TATAATGATA
Statistics
Matches: 129, Mismatches: 22, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
13 4 0.03
14 96 0.74
15 28 0.22
16 1 0.01
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAACCT
Found at i:107888387 original size:40 final size:38
Alignment explanation
Indices: 107888300--107888408 Score: 110
Period size: 40 Copynumber: 2.8 Consensus size: 38
107888290 TAATTTTTTT
* * *
107888300 GCGGCGTTTTTTAAAAAGCCGCTAATGGTCGACCTTTA
1 GCGGCGTTTTTTAAAAAGCCGCTAATGCTCAACCTATA
* *
107888338 GTGGCGTTTTTTAAAAAGCGCCGCTAATGCTCAATCTATA
1 GCGGCGTTTTTTAAAAA--GCCGCTAATGCTCAACCTATA
* * *
107888378 GCGGTGTTTTTCAAAAAATACCGCTAATGCT
1 GCGGCGTTTTT-TAAAAA-GCCGCTAATGCT
107888409 ACTAAAGCTC
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
38 16 0.28
40 37 0.64
41 5 0.09
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (38 bp):
GCGGCGTTTTTTAAAAAGCCGCTAATGCTCAACCTATA
Found at i:107888559 original size:39 final size:40
Alignment explanation
Indices: 107888458--107888559 Score: 98
Period size: 40 Copynumber: 2.6 Consensus size: 40
107888448 TTTTTCGGCT
* ** * ***
107888458 TTTTTTAAAAAGCGCCGCTAATAGTTGACCTATAGCTGCG
1 TTTTTTAAAAAGCGCCGCTAATGGTCAACCCATAAAGGCG
* * * *
107888498 TTTTTCAAAAAACGTCACTAATGGTCAACCCATAAAGGC-
1 TTTTTTAAAAAGCGCCGCTAATGGTCAACCCATAAAGGCG
107888537 TTTTTTAAAAAGCGCCGCTAATG
1 TTTTTTAAAAAGCGCCGCTAATG
107888560 CTCGATCTAT
Statistics
Matches: 47, Mismatches: 15, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
39 19 0.40
40 28 0.60
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (40 bp):
TTTTTTAAAAAGCGCCGCTAATGGTCAACCCATAAAGGCG
Found at i:107888910 original size:32 final size:32
Alignment explanation
Indices: 107888867--107888937 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
107888857 GTTTGGTTCG
* *
107888867 CTGTAACGGAATAGGGCTATAATGGAATAGAA
1 CTGTAATGGAATAGAGCTATAATGGAATAGAA
* * *
107888899 TTGTAATGGAATAGAGTTGTAATGGAATAGAA
1 CTGTAATGGAATAGAGCTATAATGGAATAGAA
107888931 CTGTAAT
1 CTGTAAT
107888938 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.28
Consensus pattern (32 bp):
CTGTAATGGAATAGAGCTATAATGGAATAGAA
Found at i:107888935 original size:16 final size:16
Alignment explanation
Indices: 107888867--107888937 Score: 79
Period size: 16 Copynumber: 4.4 Consensus size: 16
107888857 GTTTGGTTCG
* **
107888867 CTGTAACGGAATAGGG
1 CTGTAATGGAATAGAA
*
107888883 CTATAATGGAATAGAA
1 CTGTAATGGAATAGAA
* *
107888899 TTGTAATGGAATAGAG
1 CTGTAATGGAATAGAA
*
107888915 TTGTAATGGAATAGAA
1 CTGTAATGGAATAGAA
107888931 CTGTAAT
1 CTGTAAT
107888938 CAGTAATTCA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAA
Found at i:107888971 original size:46 final size:44
Alignment explanation
Indices: 107888919--107889012 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
107888909 ATAGAGTTGT
*
107888919 AATGGAATAGAACTGTAATCAGTAATTCA-ATTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCATA-TGTTTGGTTGAATGA
* *
107888965 AATGGAATAGAACTGTAATGGTATTCTTATGTTTGGTTGAATGA
1 AATGGAATAGAACTGTAATAGTATTCATATGTTTGGTTGAATGA
107889009 AATG
1 AATG
107889013 ATGCTGTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 22 0.50
45 3 0.07
46 19 0.43
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATATGTTTGGTTGAATGA
Found at i:107891950 original size:21 final size:20
Alignment explanation
Indices: 107891899--107891972 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 20
107891889 AATCCCTAAT
107891899 TCTCTTTCTTTTCTTCCTCCTTTC
1 TCTCTTT-TTTTCTT--T-CTTTC
*
107891923 T-TTTTTTTTTCTATTCTTTC
1 TCTCTTTTTTTCT-TTCTTTC
* *
107891943 TCTGTTTTGTTTCTTTGTTTC
1 TCTCTTTT-TTTCTTTCTTTC
107891964 TCTCTTTTT
1 TCTCTTTTT
107891973 CTATTTTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
20 7 0.16
21 19 0.44
22 11 0.26
23 5 0.12
24 1 0.02
ACGTcount: A:0.01, C:0.23, G:0.04, T:0.72
Consensus pattern (20 bp):
TCTCTTTTTTTCTTTCTTTC
Found at i:107893373 original size:54 final size:54
Alignment explanation
Indices: 107893290--107893399 Score: 175
Period size: 54 Copynumber: 2.0 Consensus size: 54
107893280 GAAAACCTTA
* * *
107893290 TTCCAAAAAACACCATTGTTCAAAAAGAAGCTATTGTTCAGGGGGAGACTATTG
1 TTCCAAAAAACACAATTGTTCAAAAAGAAGCTACTGCTCAGGGGGAGACTATTG
**
107893344 TTCCAAAAAACACAATTGTTCAAGGAGAAGCTACTGCTCAGGGGGAGACTATTG
1 TTCCAAAAAACACAATTGTTCAAAAAGAAGCTACTGCTCAGGGGGAGACTATTG
107893398 TT
1 TT
107893400 TAAAAAGAGA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (54 bp):
TTCCAAAAAACACAATTGTTCAAAAAGAAGCTACTGCTCAGGGGGAGACTATTG
Found at i:107894514 original size:15 final size:15
Alignment explanation
Indices: 107894494--107894522 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
107894484 TTTACAATTT
107894494 CAATTTCAATTCATA
1 CAATTTCAATTCATA
107894509 CAATTTCAATTCAT
1 CAATTTCAATTCAT
107894523 CCATATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (15 bp):
CAATTTCAATTCATA
Found at i:107899484 original size:27 final size:26
Alignment explanation
Indices: 107899447--107899558 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
107899437 AGCATGACTG
* *
107899447 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
107899473 CCAGATACAGATAATTGTGGCAAAGCCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
107899501 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
107899528 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
107899555 CCAG
1 CCAG
107899559 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.07
27 55 0.72
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:107899506 original size:54 final size:54
Alignment explanation
Indices: 107899447--107899558 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
107899437 AGCATGACTG
*
107899447 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAAAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCAAAGCCA
* * *
107899501 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAAAGCCA
107899555 CCAG
1 CCAG
107899559 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAAAGCCA
Found at i:107901177 original size:26 final size:26
Alignment explanation
Indices: 107901146--107901253 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
107901136 TGAAATTTCC
*
107901146 ATCATGGAACATTTACCGAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
107901172 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
107901198 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
107901224 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
107901250 ATCA
1 ATCA
107901254 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:107908180 original size:26 final size:25
Alignment explanation
Indices: 107908131--107908182 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
107908121 TATTCTTAAG
*
107908131 AAAGGAAAAACAATAAAAGGGAAAA
1 AAAGGAAAAAAAATAAAAGGGAAAA
* *
107908156 AAAGGAAAAAAAAATACAAGTGAAAA
1 AAAGG-AAAAAAAATAAAAGGGAAAA
107908182 A
1 A
107908183 TATTTAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.73, C:0.04, G:0.17, T:0.06
Consensus pattern (25 bp):
AAAGGAAAAAAAATAAAAGGGAAAA
Found at i:107916260 original size:31 final size:31
Alignment explanation
Indices: 107916222--107916285 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
107916212 CCCTTTCATA
107916222 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
107916253 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
107916284 TT
1 TT
107916286 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:107916554 original size:23 final size:23
Alignment explanation
Indices: 107916500--107916663 Score: 278
Period size: 23 Copynumber: 7.1 Consensus size: 23
107916490 CCTAGCCTCT
* *
107916500 TTTAGTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
107916523 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
107916547 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
107916569 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
107916591 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
107916615 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
107916638 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
107916661 TTT
1 TTT
107916664 TGCACTTCCT
Statistics
Matches: 136, Mismatches: 2, Indels: 5
0.95 0.01 0.03
Matches are distributed among these distances:
22 34 0.25
23 69 0.51
24 33 0.24
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Done.