Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 350 of 425
Found at i:108233182 original size:44 final size:44
Alignment explanation
Indices: 108233133--108233221 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
108233123 AAGTAACAGA
*
108233133 AACAGTACAACAC-ACGAAGTGCCTTATCGACACAAAGTCGAAGT
1 AACAGTACAACACTA-GAAGTGCCTCATCGACACAAAGTCGAAGT
* ** * *
108233177 AACAGTACGACACTATTAGTGCCTCATCGACTCAAGGTCGAAGT
1 AACAGTACAACACTAGAAGTGCCTCATCGACACAAAGTCGAAGT
108233221 A
1 A
108233222 TCCCTGTACA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 37 0.97
45 1 0.03
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (44 bp):
AACAGTACAACACTAGAAGTGCCTCATCGACACAAAGTCGAAGT
Found at i:108234094 original size:25 final size:25
Alignment explanation
Indices: 108234039--108234087 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
108234029 TCCCAATTCC
*
108234039 TTCTTTGT-TTTGTTTCTATTCTTT
1 TTCTTTTTCTTTGTTTCTATTCTTT
*
108234063 TTCTTTTTCTTTGTTTGT-TTCTTT
1 TTCTTTTTCTTTGTTTCTATTCTTT
108234087 T
1 T
108234088 ATGTTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.02, C:0.12, G:0.08, T:0.78
Consensus pattern (25 bp):
TTCTTTTTCTTTGTTTCTATTCTTT
Found at i:108234106 original size:8 final size:8
Alignment explanation
Indices: 108234093--108234136 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
108234083 CTTTTATGTT
108234093 TTATTATA
1 TTATTATA
*
108234101 TTATTAAA
1 TTATTATA
108234109 TTATTATA
1 TTATTATA
*
108234117 TTAATATA
1 TTATTATA
108234125 TTATTATA
1 TTATTATA
108234133 TTAT
1 TTAT
108234137 ATACTTAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TTATTATA
Found at i:108239679 original size:40 final size:39
Alignment explanation
Indices: 108239628--108239778 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 39
108239618 TTGATGACAA
*
108239628 TTCGGCTATGTATGGCACTTAGTGTGCGATTCGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATT-GAAATAGC
* * *
108239668 TTTGGCCATGTATGGCACTTAGTGTGCGTTTTGAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCG-ATTGAAATAGC
* * *
108239708 TTCAGCTATGTATGACACTTAGTGTGCAAGATTAAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGC--GATTGAAATAGC
108239749 TTCGGCTATGTATTGGCACTTAGTGTGCGA
1 TTCGGCTATGTA-TGGCACTTAGTGTGCGA
108239779 GAATTTGAGT
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
40 58 0.61
41 22 0.23
42 15 0.16
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.34
Consensus pattern (39 bp):
TTCGGCTATGTATGGCACTTAGTGTGCGATTGAAATAGC
Found at i:108247296 original size:25 final size:25
Alignment explanation
Indices: 108247265--108247319 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
108247255 CTCCAAATCG
*
108247265 TTTTCCCCAAATCCCTAACTTAGTT
1 TTTTCCCCAAATCCCTAACTTAATT
*
108247290 TTTTCCCCAATTCCCTAACTTAATT
1 TTTTCCCCAAATCCCTAACTTAATT
108247315 TTTTC
1 TTTTC
108247320 TTTCCCATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.22, C:0.31, G:0.02, T:0.45
Consensus pattern (25 bp):
TTTTCCCCAAATCCCTAACTTAATT
Found at i:108251703 original size:43 final size:44
Alignment explanation
Indices: 108251642--108251735 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 44
108251632 GCATTTTCCC
* * *
108251642 ACAAACGCCGCTATAGAACATAATCTTTAGGGGCGCTTTTA-CT
1 ACAAACGCCGCTAAAGAACATAATCTTTAGCGGCGCTTCTAGCT
*
108251685 ACAAACGCCGCTAAAGAACATAATCTTTTGCGGCGCTTCTAGCT
1 ACAAACGCCGCTAAAGAACATAATCTTTAGCGGCGCTTCTAGCT
108251729 ACAAACG
1 ACAAACG
108251736 TCACAACATG
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 37 0.80
44 9 0.20
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (44 bp):
ACAAACGCCGCTAAAGAACATAATCTTTAGCGGCGCTTCTAGCT
Found at i:108252050 original size:17 final size:18
Alignment explanation
Indices: 108252003--108252055 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 18
108251993 TTATTATTTT
108252003 ATTAAGATTTAATATTAA
1 ATTAAGATTTAATATTAA
* * *
108252021 ATCAAGA-TAAATATTAG
1 ATTAAGATTTAATATTAA
108252038 ATTAA-ATTTAATATTAA
1 ATTAAGATTTAATATTAA
108252055 A
1 A
108252056 GTGATTAAGT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 1 0.04
17 21 0.75
18 6 0.21
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.40
Consensus pattern (18 bp):
ATTAAGATTTAATATTAA
Found at i:108255596 original size:6 final size:6
Alignment explanation
Indices: 108255585--108255611 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
108255575 CACCGTAGAG
108255585 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
108255612 GTGTACACAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:108256518 original size:20 final size:18
Alignment explanation
Indices: 108256484--108256523 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 18
108256474 TTTTCCTTTT
108256484 CTTTTTCTTTTTCTTTCC
1 CTTTTTCTTTTTCTTTCC
108256502 CTTTTTCCTTCTTTCTTTCC
1 CTTTTT-CTT-TTTCTTTCC
108256522 CT
1 CT
108256524 GCTATTTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 6 0.30
19 3 0.15
20 11 0.55
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (18 bp):
CTTTTTCTTTTTCTTTCC
Found at i:108258674 original size:19 final size:19
Alignment explanation
Indices: 108258650--108258704 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
108258640 TTTAAGATAT
108258650 TATATTTATTTATAATTAA
1 TATATTTATTTATAATTAA
** * *
108258669 TATATTTAAATAAAATTAT
1 TATATTTATTTATAATTAA
*
108258688 TAATATTAATTTATAAT
1 T-ATATTTATTTATAAT
108258705 AAGTGTTTCA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATATTTATTTATAATTAA
Found at i:108261738 original size:39 final size:39
Alignment explanation
Indices: 108261695--108261775 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
108261685 GAGTTTGACA
108261695 CAAACAGAGGCCTATGTCTTTTTTGATGGATCATCTTTT
1 CAAACAGAGGCCTATGTCTTTTTTGATGGATCATCTTTT
108261734 CAAACAGAGGCCTATGTCTTTTTTGATGGATCATCTTTT
1 CAAACAGAGGCCTATGTCTTTTTTGATGGATCATCTTTT
108261773 CAA
1 CAA
108261776 CATGCATCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (39 bp):
CAAACAGAGGCCTATGTCTTTTTTGATGGATCATCTTTT
Found at i:108272652 original size:21 final size:21
Alignment explanation
Indices: 108272618--108272657 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
108272608 CAACTGAGGC
*
108272618 AGTGCCACTGCACTTTGCTCG
1 AGTGCCACTGCACTATGCTCG
108272639 AGTGCCA-TGACACTATGCT
1 AGTGCCACTG-CACTATGCT
108272658 TGTTATGGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.28
Consensus pattern (21 bp):
AGTGCCACTGCACTATGCTCG
Found at i:108277097 original size:75 final size:75
Alignment explanation
Indices: 108276969--108277117 Score: 244
Period size: 75 Copynumber: 2.0 Consensus size: 75
108276959 CAAGTCGCCT
* * *
108276969 CTTGAAGCCCTTTTGTCTGACATGCAAGTAACAGGTACTGCTGCTTCCTGCTCTAAGAAAAGTGA
1 CTTGAAGCCCTTTTGTCAGACATGCAAGTAACAGATACTGCTGCTTCCTGCTCTAAAAAAAGTGA
*
108277034 TGATGGTTCC
66 TGATAGTTCC
* *
108277044 CTTGGAGCCCTTTTGTCAGACATGCAAGTCACAGATACTGCTGCTTCCTGCTCTAAAAAAAGTGA
1 CTTGAAGCCCTTTTGTCAGACATGCAAGTAACAGATACTGCTGCTTCCTGCTCTAAAAAAAGTGA
108277109 TGATAGTTC
66 TGATAGTTC
108277118 TCAACCTGGT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (75 bp):
CTTGAAGCCCTTTTGTCAGACATGCAAGTAACAGATACTGCTGCTTCCTGCTCTAAAAAAAGTGA
TGATAGTTCC
Found at i:108290536 original size:6 final size:6
Alignment explanation
Indices: 108290525--108290554 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
108290515 TCTGTCAAAT
108290525 TCCTTC TCCTTC TCCTTC TCCTTC TCCTTC
1 TCCTTC TCCTTC TCCTTC TCCTTC TCCTTC
108290555 CGTTTTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (6 bp):
TCCTTC
Found at i:108300432 original size:22 final size:22
Alignment explanation
Indices: 108300384--108300433 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
108300374 AAATCCATAA
*
108300384 AATTAAAAAAGAAAAAAGAATC
1 AATTCAAAAAGAAAAAAGAATC
* *
108300406 AATTCAAAAATAATAAAGAATC
1 AATTCAAAAAGAAAAAAGAATC
108300428 AATTCA
1 AATTCA
108300434 GTTTCAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.66, C:0.08, G:0.06, T:0.20
Consensus pattern (22 bp):
AATTCAAAAAGAAAAAAGAATC
Found at i:108301787 original size:22 final size:23
Alignment explanation
Indices: 108301737--108301795 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
108301727 TATCTTCCAA
* *
108301737 TATTT-TATTATAAATATTTAAT
1 TATTTATATAATAAATATTAAAT
*
108301759 TAATTATATAATAAAT-TTAAAT
1 TATTTATATAATAAATATTAAAT
108301781 TATTTAT-TAGATAAA
1 TATTTATATA-ATAAA
108301796 ATGATAATCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 20 0.65
23 9 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
TATTTATATAATAAATATTAAAT
Found at i:108302636 original size:68 final size:68
Alignment explanation
Indices: 108302527--108302655 Score: 215
Period size: 68 Copynumber: 1.9 Consensus size: 68
108302517 GTGTGTTTTC
*
108302527 CAAATGAAATCTCATTCCTATTTATAAGAATTTTCATGTCTCTTCATAGAGACATCTTTCAATAG
1 CAAATGAAATCTCATTCCTATTTATAAGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATAG
108302592 TTT
66 TTT
* *
108302595 CAAATGAAATC-CTATTCCTATTTATAGGAATTTTCATGTCTCTTCATAAAGACGTCTTTCA
1 CAAATGAAATCTC-ATTCCTATTTATAAGAATTTTCATGTCTCTTCATAAAGACATCTTTCA
108302656 TTAGGTGTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
67 1 0.02
68 56 0.98
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (68 bp):
CAAATGAAATCTCATTCCTATTTATAAGAATTTTCATGTCTCTTCATAAAGACATCTTTCAATAG
TTT
Found at i:108307454 original size:20 final size:21
Alignment explanation
Indices: 108307431--108307469 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
108307421 ATTTAATTGC
*
108307431 TTTTTAT-TTAAATAAATAGG
1 TTTTTATATGAAATAAATAGG
108307451 TTTTTATATGAAATAAATA
1 TTTTTATATGAAATAAATA
108307470 AAATAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.49
Consensus pattern (21 bp):
TTTTTATATGAAATAAATAGG
Found at i:108308845 original size:6 final size:6
Alignment explanation
Indices: 108308834--108308873 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
108308824 CTGTGTACCA
*
108308834 TTACTG TTACTG TTACTG TTACTG TTATTG TTACTG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
108308874 CATTACGGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (6 bp):
TTACTG
Found at i:108309115 original size:18 final size:18
Alignment explanation
Indices: 108308987--108309115 Score: 89
Period size: 18 Copynumber: 7.1 Consensus size: 18
108308977 TAAATAAAGG
* *
108308987 TACTGAATAATTGACTGC
1 TACTGAATAACTGACTGT
*
108309005 TACTGACTAACTGACTGT
1 TACTGAATAACTGACTGT
* *
108309023 TACTGGATAACTGACTGC
1 TACTGAATAACTGACTGT
** * * *
108309041 TACTGCGTAAATAAATTGT
1 TACTGAATAACT-GACTGT
* * * *
108309060 TACTAAATAATTGATTAT
1 TACTGAATAACTGACTGT
* *
108309078 TACTGAATAATTTA-TCGT
1 TACTGAATAACTGACT-GT
108309096 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGT
108309114 TA
1 TA
108309116 AAGAGTTATT
Statistics
Matches: 85, Mismatches: 23, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
17 1 0.01
18 72 0.85
19 12 0.14
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:108316344 original size:11 final size:11
Alignment explanation
Indices: 108316330--108316373 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
108316320 AGATAAATAT
108316330 TATTTTATTAA
1 TATTTTATTAA
*
108316341 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
108316354 TATTTTTTTAA
1 TATTTTATTAA
108316365 TATTTTATT
1 TATTTTATT
108316374 TAATTAAGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
11 15 0.56
12 5 0.19
13 7 0.26
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:108318447 original size:33 final size:32
Alignment explanation
Indices: 108318339--108318454 Score: 97
Period size: 33 Copynumber: 3.4 Consensus size: 32
108318329 ATATGTGCAT
* *
108318339 GTGTAAGACCATAGCTGGGCTATGGCATCATGAA
1 GTGTAAGACCATAGCTGGGCTATGGAAT-A-CAA
* * * **
108318373 GATGATAAGACCATATCTGGGATATGGTACTACGT
1 G-TG-TAAGACCATAGCTGGGCTATGG-AATACAA
* *
108318408 GAGTAAGACCATGGCTGGGCTATGGAAATACAA
1 GTGTAAGACCATAGCTGGGCTATGG-AATACAA
108318441 GTGTAAGACCATAG
1 GTGTAAGACCATAG
108318455 TTGGATTATG
Statistics
Matches: 62, Mismatches: 17, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
33 35 0.56
34 2 0.03
35 3 0.05
36 21 0.34
37 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (32 bp):
GTGTAAGACCATAGCTGGGCTATGGAATACAA
Found at i:108323818 original size:29 final size:29
Alignment explanation
Indices: 108323786--108323944 Score: 205
Period size: 29 Copynumber: 5.4 Consensus size: 29
108323776 TAGTGAATCT
108323786 GCACACTTAGTGCTATATATTTTCAGCTC
1 GCACACTTAGTGCTATATATTTTCAGCTC
108323815 GCACACTTAGTGCTATATAATTTTCAGCTC
1 GCACACTTAGTGCTATAT-ATTTTCAGCTC
108323845 GCACACTTAGTGCTATATATTTTCAGCTC
1 GCACACTTAGTGCTATATATTTTCAGCTC
* * *
108323874 GCACACTTAGTGCTGTATA--ATCAAACTC
1 GCACACTTAGTGCTATATATTTTC-AGCTC
* * * * *
108323902 GCACACTTAGTGCTGTACAATTTTAAACCC
1 GCACACTTAGTGCTATA-TATTTTCAGCTC
108323932 GCACACTTAGTGC
1 GCACACTTAGTGC
108323945 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.18
29 48 0.41
30 46 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (29 bp):
GCACACTTAGTGCTATATATTTTCAGCTC
Found at i:108323840 original size:30 final size:30
Alignment explanation
Indices: 108323786--108323944 Score: 211
Period size: 30 Copynumber: 5.4 Consensus size: 30
108323776 TAGTGAATCT
108323786 GCACACTTAGTGCTATAT-ATTTTCAGCTC
1 GCACACTTAGTGCTATATAATTTTCAGCTC
108323815 GCACACTTAGTGCTATATAATTTTCAGCTC
1 GCACACTTAGTGCTATATAATTTTCAGCTC
108323845 GCACACTTAGTGCTATAT-ATTTTCAGCTC
1 GCACACTTAGTGCTATATAATTTTCAGCTC
* *
108323874 GCACACTTAGTGCTGTATAA---TCAAACTC
1 GCACACTTAGTGCTATATAATTTTC-AGCTC
* * * * *
108323902 GCACACTTAGTGCTGTACAATTTTAAACCC
1 GCACACTTAGTGCTATATAATTTTCAGCTC
108323932 GCACACTTAGTGC
1 GCACACTTAGTGC
108323945 CAATCTTGTC
Statistics
Matches: 119, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 46 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
GCACACTTAGTGCTATATAATTTTCAGCTC
Found at i:108323878 original size:59 final size:57
Alignment explanation
Indices: 108323786--108323944 Score: 212
Period size: 59 Copynumber: 2.7 Consensus size: 57
108323776 TAGTGAATCT
*
108323786 GCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCTC
1 GCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACTC
*
108323845 GCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACTC
1 GCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACTC
* * * * *
108323902 GCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 GCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
108323945 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 48 0.53
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (57 bp):
GCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACTC
Found at i:108331855 original size:29 final size:29
Alignment explanation
Indices: 108331823--108331982 Score: 198
Period size: 29 Copynumber: 5.5 Consensus size: 29
108331813 ATAGTGAATC
108331823 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
108331852 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
108331882 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* * * *
108331911 CGCACACTTAGTACTGTATA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AGCT
* * * * *
108331939 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAGCT
108331969 CGCACACTTAGTGC
1 CGCACACTTAGTGC
108331983 CAATCTTGTC
Statistics
Matches: 117, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.02
28 20 0.17
29 48 0.41
30 46 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:108331878 original size:30 final size:30
Alignment explanation
Indices: 108331823--108331982 Score: 204
Period size: 30 Copynumber: 5.5 Consensus size: 30
108331813 ATAGTGAATC
108331823 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
108331852 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
108331882 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* * *
108331911 CGCACACTTAGTACTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
108331939 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
108331969 CGCACACTTAGTGC
1 CGCACACTTAGTGC
108331983 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.19
29 46 0.39
30 47 0.40
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:108331915 original size:59 final size:57
Alignment explanation
Indices: 108331823--108331982 Score: 205
Period size: 59 Copynumber: 2.8 Consensus size: 57
108331813 ATAGTGAATC
*
108331823 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
* *
108331882 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTACTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
108331939 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
108331983 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 48 0.53
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:108331949 original size:28 final size:29
Alignment explanation
Indices: 108331909--108331980 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
108331899 ATATTTTCAG
*
108331909 CTCGCACACTTAGTACTGTATAA-TCAAA
1 CTCGCACACTTAGTACTGTACAATTCAAA
* *
108331937 CTCGCACACTTAGTGCTGTACAATTTTAAA
1 CTCGCACACTTAGTACTGTACAA-TTCAAA
*
108331967 CCCGCACACTTAGT
1 CTCGCACACTTAGT
108331981 GCCAATCTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 21 0.55
30 17 0.45
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (29 bp):
CTCGCACACTTAGTACTGTACAATTCAAA
Found at i:108337126 original size:47 final size:46
Alignment explanation
Indices: 108337056--108337278 Score: 168
Period size: 47 Copynumber: 4.7 Consensus size: 46
108337046 ATGTTTGTGT
* *
108337056 GCTAGTTTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* ** *
108337102 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTAAGATGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CATTATGAGA
* * *
108337150 GTTAGTCTAAGACATGTCTGGGACATGCATCGGCCTC-TTGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATG-AGA
* * * * * *
108337196 GCCAGTGTAAGACCATGTCAGGGACATGGAATCGACTTA-A-TGTGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATTATGAGA
* *
108337243 GCCAGTGTAAAATCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
108337279 ATTATAACCT
Statistics
Matches: 139, Mismatches: 27, Indels: 21
0.74 0.14 0.11
Matches are distributed among these distances:
46 31 0.22
47 79 0.57
48 29 0.21
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:108337224 original size:94 final size:93
Alignment explanation
Indices: 108337056--108337278 Score: 263
Period size: 94 Copynumber: 2.4 Consensus size: 93
108337046 ATGTTTGTGT
* * *
108337056 GCTAGTTTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTCTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
* * * *
108337121 TGGGACATGGCATCGGCATTAA-GATGAGT
66 AGGGACATGGAATCGAC-TTAATG-TGAGA
* *
108337150 GTTAGTCTAAGACATGTCTGGGACATGCATCGGCCTC-TTGATGTA-AGCCAGTGTAAGACCATG
1 GCTAGTCTAAGACATGTCTGGGACATGCATCGGCCACATT-ATG-AGAGCCAGTGTAAGACCATG
108337213 TCAGGGACATGGAATCGACTTAATGTGAGA
64 TCAGGGACATGGAATCGACTTAATGTGAGA
* * *
108337243 GCCAGTGTAAAATCATGTCTGGGACATGGCATCGGC
1 GCTAGTCTAAGA-CATGTCTGGGACAT-GCATCGGC
108337279 ATTATAACCT
Statistics
Matches: 111, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
93 18 0.16
94 84 0.76
95 9 0.08
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (93 bp):
GCTAGTCTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
AGGGACATGGAATCGACTTAATGTGAGA
Found at i:108350030 original size:37 final size:37
Alignment explanation
Indices: 108349980--108350053 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
108349970 CAGTAGTATG
108349980 CCGAGTCTCTCAACAAAGATATGGCACACTTTAAGCA
1 CCGAGTCTCTCAACAAAGATATGGCACACTTTAAGCA
108350017 CCGAGTCTCTCAACAAAGATATGGCACACTTTAAGCA
1 CCGAGTCTCTCAACAAAGATATGGCACACTTTAAGCA
108350054 TTCTTCGGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (37 bp):
CCGAGTCTCTCAACAAAGATATGGCACACTTTAAGCA
Found at i:108351757 original size:41 final size:41
Alignment explanation
Indices: 108351700--108351778 Score: 158
Period size: 41 Copynumber: 1.9 Consensus size: 41
108351690 CTTAGTAAGT
108351700 ACATATATGCAAATAAAGTGTAATTAAAAGAAAATCATGCC
1 ACATATATGCAAATAAAGTGTAATTAAAAGAAAATCATGCC
108351741 ACATATATGCAAATAAAGTGTAATTAAAAGAAAATCAT
1 ACATATATGCAAATAAAGTGTAATTAAAAGAAAATCAT
108351779 ATTCATCAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.53, C:0.10, G:0.11, T:0.25
Consensus pattern (41 bp):
ACATATATGCAAATAAAGTGTAATTAAAAGAAAATCATGCC
Found at i:108355762 original size:26 final size:26
Alignment explanation
Indices: 108355707--108355793 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
108355697 AATTAGGTAG
*
108355707 TTAATTAATTAAAATTCAACATTAA-T-T
1 TTAATTAA-T-AAATT-AAAATTAATTAT
108355734 TTAATTAATAAATTAAAATTAATTAT
1 TTAATTAATAAATTAAAATTAATTAT
* ** *
108355760 TTAATCAACCAA-TAAAAATAATTAAT
1 TTAATTAATAAATTAAAATTAATT-AT
108355786 TTAATTAA
1 TTAATTAA
108355794 ATAATTTACA
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
24 7 0.14
25 16 0.31
26 20 0.39
27 8 0.16
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (26 bp):
TTAATTAATAAATTAAAATTAATTAT
Found at i:108358395 original size:21 final size:21
Alignment explanation
Indices: 108358314--108358397 Score: 54
Period size: 21 Copynumber: 4.1 Consensus size: 21
108358304 TTATTTTCCA
108358314 TCAT-TTTCTTTCTTT-TTTCT
1 TCATCTTTC-TTCTTTCTTTCT
*
108358334 T-ATTTTTCTT-TTTCTTT-T
1 TCATCTTTCTTCTTTCTTTCT
* * *
108358352 TCTAGCCTTACTTCTATAC-TTCT
1 TC-A-TCTTTCTTCT-TTCTTTCT
108358375 TCATCTTTCTTCTTTCTTTCT
1 TCATCTTTCTTCTTTCTTTCT
108358396 TC
1 TC
108358398 TATAAAAAAC
Statistics
Matches: 48, Mismatches: 7, Indels: 17
0.67 0.10 0.24
Matches are distributed among these distances:
18 5 0.10
19 7 0.15
20 8 0.17
21 19 0.40
22 4 0.08
23 5 0.10
ACGTcount: A:0.08, C:0.24, G:0.01, T:0.67
Consensus pattern (21 bp):
TCATCTTTCTTCTTTCTTTCT
Found at i:108367892 original size:30 final size:30
Alignment explanation
Indices: 108367858--108367923 Score: 71
Period size: 31 Copynumber: 2.2 Consensus size: 30
108367848 AAAAAAATAA
*
108367858 CAAATCTACTATTTTTAAAAGCTTGATG-GT
1 CAAATCGACTATTTTTAAAAGCTTGA-GAGT
* * *
108367888 CAAATTCGGCTCTTTTTAAAAGGTTGAGAGT
1 CAAA-TCGACTATTTTTAAAAGCTTGAGAGT
108367919 CAAAT
1 CAAAT
108367924 TTAACTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
30 6 0.20
31 24 0.80
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (30 bp):
CAAATCGACTATTTTTAAAAGCTTGAGAGT
Found at i:108368469 original size:16 final size:16
Alignment explanation
Indices: 108368444--108368475 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
108368434 GTTCAACTCC
*
108368444 TAATATAAAGGCCTCT
1 TAATACAAAGGCCTCT
108368460 TAATACAAAGGCCTCT
1 TAATACAAAGGCCTCT
108368476 ACGATACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (16 bp):
TAATACAAAGGCCTCT
Found at i:108371638 original size:29 final size:29
Alignment explanation
Indices: 108371596--108371654 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
108371586 TGATTAGAAA
108371596 ATTGATGATAACAGAAAATTAAGCCACAT
1 ATTGATGATAACAGAAAATTAAGCCACAT
108371625 ATTGATGATAACAGAAAATTAAGCCACAT
1 ATTGATGATAACAGAAAATTAAGCCACAT
108371654 A
1 A
108371655 GTAGAAGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
ATTGATGATAACAGAAAATTAAGCCACAT
Found at i:108374776 original size:23 final size:23
Alignment explanation
Indices: 108374749--108374818 Score: 140
Period size: 23 Copynumber: 3.0 Consensus size: 23
108374739 CTATCTTATC
108374749 TAACCTAGCTATCAATGAATCTT
1 TAACCTAGCTATCAATGAATCTT
108374772 TAACCTAGCTATCAATGAATCTT
1 TAACCTAGCTATCAATGAATCTT
108374795 TAACCTAGCTATCAATGAATCTT
1 TAACCTAGCTATCAATGAATCTT
108374818 T
1 T
108374819 CTTTCAGGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (23 bp):
TAACCTAGCTATCAATGAATCTT
Found at i:108377747 original size:2 final size:2
Alignment explanation
Indices: 108377742--108377783 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
108377732 CGTACGTATG
*
108377742 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA T- TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
108377782 TA
1 TA
108377784 ATTTAATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:108380088 original size:26 final size:26
Alignment explanation
Indices: 108380036--108380093 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 26
108380026 TGGCTATCTG
* *
108380036 GAGC-TCTTGATTAAAGGATCTTCGT
1 GAGCTTCTTGATTAAAAGATATTCGT
* *
108380061 GAGCTTCTTGATTAAAAGTTATTTGT
1 GAGCTTCTTGATTAAAAGATATTCGT
*
108380087 GAACTTC
1 GAGCTTC
108380094 CTCACTATGG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.40
Consensus pattern (26 bp):
GAGCTTCTTGATTAAAAGATATTCGT
Found at i:108380428 original size:23 final size:23
Alignment explanation
Indices: 108380399--108380442 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
108380389 AATACATGAA
108380399 AAATGATGAT-ACATGATATATGG
1 AAATGAT-ATCACATGATATATGG
*
108380422 AAATGATATCACTTGATATAT
1 AAATGATATCACATGATATAT
108380443 TGAAGCATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGATATCACATGATATATGG
Found at i:108381507 original size:27 final size:27
Alignment explanation
Indices: 108381477--108381533 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
108381467 TCCCTAAGTT
108381477 ATATTAATATCTCTTTCTAGAGTAAAA
1 ATATTAATATCTCTTTCTAGAGTAAAA
108381504 ATATTAATATCTCTTTCTAGAGTAAAA
1 ATATTAATATCTCTTTCTAGAGTAAAA
108381531 ATA
1 ATA
108381534 ACTGATTCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (27 bp):
ATATTAATATCTCTTTCTAGAGTAAAA
Found at i:108383098 original size:25 final size:26
Alignment explanation
Indices: 108383053--108383101 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
108383043 TGAGAACAAG
*
108383053 GAATAATAAGAAATAATTTACCAACT
1 GAATAATAAGAAATAAGTTACCAACT
108383079 GAATAA-AAGAACAT-AGTTACCAA
1 GAATAATAAGAA-ATAAGTTACCAA
108383102 ATCAAATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.22
Consensus pattern (26 bp):
GAATAATAAGAAATAAGTTACCAACT
Found at i:108394245 original size:24 final size:25
Alignment explanation
Indices: 108394218--108394274 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 25
108394208 TTGCATGCTC
108394218 TATTAA-AAAATACATTCATGTCAT
1 TATTAACAAAATACATTCATGTCAT
*
108394242 TATTAAGCTAACATACATTCATGTCAT
1 TATTAA-C-AAAATACATTCATGTCAT
108394269 TATTAA
1 TATTAA
108394275 GCTAACATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 6 0.21
27 23 0.79
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (25 bp):
TATTAACAAAATACATTCATGTCAT
Found at i:108394259 original size:27 final size:27
Alignment explanation
Indices: 108394227--108394283 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
108394217 CTATTAAAAA
108394227 ATACATTCATGTCATTATTAAGCTAAC
1 ATACATTCATGTCATTATTAAGCTAAC
108394254 ATACATTCATGTCATTATTAAGCTAAC
1 ATACATTCATGTCATTATTAAGCTAAC
108394281 ATA
1 ATA
108394284 ATAATTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.37
Consensus pattern (27 bp):
ATACATTCATGTCATTATTAAGCTAAC
Found at i:108417145 original size:3 final size:3
Alignment explanation
Indices: 108417137--108417194 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
108417127 AGATATTTAC
108417137 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
108417185 TTA TTA TTA T
1 TTA TTA TTA T
108417195 AATGACAAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:108422155 original size:38 final size:40
Alignment explanation
Indices: 108422032--108422212 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 40
108422022 TCGAATGATG
* * *
108422032 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
108422072 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
*
108422112 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * **
108422150 CCCGGGTTAAGTCCC-AAGGCATTCGTGCAAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
108422190 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
108422213 TGAGCGAGTC
Statistics
Matches: 114, Mismatches: 20, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
38 29 0.25
39 36 0.32
40 42 0.37
41 7 0.06
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:108425027 original size:26 final size:25
Alignment explanation
Indices: 108424998--108425057 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 25
108424988 CGAAGTGAAA
*
108424998 AGAAAAAGTGATCGAGGAATAGCTCG
1 AGAAAAAAT-ATCGAGGAATAGCTCG
108425024 AGAAAAAAATATCGAGGAATAGCTCG
1 AG-AAAAAATATCGAGGAATAGCTCG
108425050 AGAAAAAA
1 AGAAAAAA
108425058 ATATTGGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 6 0.19
26 20 0.62
27 6 0.19
ACGTcount: A:0.52, C:0.10, G:0.25, T:0.13
Consensus pattern (25 bp):
AGAAAAAATATCGAGGAATAGCTCG
Found at i:108425058 original size:26 final size:26
Alignment explanation
Indices: 108425008--108425061 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
108424998 AGAAAAAGTG
108425008 ATCGAGGAATAGCTCGAGAAAAAAAT
1 ATCGAGGAATAGCTCGAGAAAAAAAT
108425034 ATCGAGGAATAGCTCGAGAAAAAAAT
1 ATCGAGGAATAGCTCGAGAAAAAAAT
108425060 AT
1 AT
108425062 TGGTTTGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.11, G:0.22, T:0.17
Consensus pattern (26 bp):
ATCGAGGAATAGCTCGAGAAAAAAAT
Found at i:108431303 original size:16 final size:17
Alignment explanation
Indices: 108431272--108431304 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
108431262 AATTTCTATC
108431272 CAATTTATACCCTAATT
1 CAATTTATACCCTAATT
*
108431289 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
108431305 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (17 bp):
CAATTTATACCCTAATT
Found at i:108431805 original size:3 final size:3
Alignment explanation
Indices: 108431797--108431845 Score: 64
Period size: 3 Copynumber: 16.3 Consensus size: 3
108431787 TATATGTTAG
* *
108431797 ATA ATA ATA TTA ATA ATA ATA ATA CATT ATA ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
108431842 ATA A
1 ATA A
108431846 ATATGTGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 36 0.90
4 2 0.05
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:108432266 original size:5 final size:5
Alignment explanation
Indices: 108432258--108432307 Score: 57
Period size: 5 Copynumber: 10.0 Consensus size: 5
108432248 TATTTATTTC
* * *
108432258 ATAAT ATAAT ATAAT ATAATT ATAAT ATAAT -TATT ATAAT TTAAC ATAAT
1 ATAAT ATAAT ATAAT ATAA-T ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
108432308 TAAATTTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
4 3 0.08
5 29 0.78
6 5 0.14
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (5 bp):
ATAAT
Found at i:108432283 original size:16 final size:16
Alignment explanation
Indices: 108432258--108432309 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
108432248 TATTTATTTC
108432258 ATAA-TATAATATAAT
1 ATAATTATAATATAAT
108432273 ATAATTATAATATAAT
1 ATAATTATAATATAAT
* *
108432289 -T-ATTATAATTTAAC
1 ATAATTATAATATAAT
108432303 ATAATTA
1 ATAATTA
108432310 AATTTATAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 11 0.34
15 6 0.19
16 15 0.47
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAATTATAATATAAT
Found at i:108433152 original size:27 final size:26
Alignment explanation
Indices: 108433108--108433158 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
108433098 ATATAATGTT
*
108433108 ATTGATGATTTGCGATTTTTAATTAG
1 ATTGATGATTTGCGATTTTGAATTAG
108433134 ATTGAATGATTTGTC-ATTTTGAATT
1 ATTG-ATGATTTG-CGATTTTGAATT
108433159 GCAAGCAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 4 0.18
27 17 0.77
28 1 0.05
ACGTcount: A:0.27, C:0.04, G:0.18, T:0.51
Consensus pattern (26 bp):
ATTGATGATTTGCGATTTTGAATTAG
Found at i:108437293 original size:10 final size:10
Alignment explanation
Indices: 108437275--108437313 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
108437265 AAACAGATCT
108437275 GCAATGCAAG
1 GCAATGCAAG
*
108437285 GCAAAGCAAG
1 GCAATGCAAG
* *
108437295 GCAAGGCAAT
1 GCAATGCAAG
108437305 GCAATGCAA
1 GCAATGCAA
108437314 TGAGAATGCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.44, C:0.21, G:0.28, T:0.08
Consensus pattern (10 bp):
GCAATGCAAG
Found at i:108437298 original size:15 final size:15
Alignment explanation
Indices: 108437275--108437313 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
108437265 AAACAGATCT
108437275 GCAATGCAAGGCAAA
1 GCAATGCAAGGCAAA
* *
108437290 GCAAGGCAAGGCAAT
1 GCAATGCAAGGCAAA
108437305 GCAATGCAA
1 GCAATGCAA
108437314 TGAGAATGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.44, C:0.21, G:0.28, T:0.08
Consensus pattern (15 bp):
GCAATGCAAGGCAAA
Found at i:108442066 original size:21 final size:21
Alignment explanation
Indices: 108442030--108442082 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
108442020 CATCAGCGAC
** * *
108442030 AATGAGATTACTTACTGTAGT
1 AATGAGATTAAGTACTATAGA
*
108442051 AGTGAGATTAAGTACTATAGA
1 AATGAGATTAAGTACTATAGA
108442072 AATGAGATTAA
1 AATGAGATTAA
108442083 AATCGGTGGT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.32
Consensus pattern (21 bp):
AATGAGATTAAGTACTATAGA
Found at i:108450465 original size:21 final size:19
Alignment explanation
Indices: 108450441--108450485 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 19
108450431 CCATGGTCTT
108450441 ATACTAAATCGCCATTCTAGC
1 ATACT-AAT-GCCATTCTAGC
108450462 ATACT-ATGCCATTCTAGC
1 ATACTAATGCCATTCTAGC
*
108450480 GTACTA
1 ATACTA
108450486 TCTTATGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 15 0.68
19 2 0.09
21 5 0.23
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (19 bp):
ATACTAATGCCATTCTAGC
Found at i:108450474 original size:18 final size:18
Alignment explanation
Indices: 108450451--108450486 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
108450441 ATACTAAATC
108450451 GCCATTCTAGCATACTAT
1 GCCATTCTAGCATACTAT
*
108450469 GCCATTCTAGCGTACTAT
1 GCCATTCTAGCATACTAT
108450487 CTTATGATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (18 bp):
GCCATTCTAGCATACTAT
Found at i:108453350 original size:20 final size:20
Alignment explanation
Indices: 108453325--108453373 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
108453315 ATCAATCTGA
*
108453325 TATCGATACT-TTTCTTAAGG
1 TATCGATA-TATTTCCTAAGG
*
108453345 TATCGACATATTTCCTAAGG
1 TATCGATATATTTCCTAAGG
108453365 TATCGATAT
1 TATCGATAT
108453374 TCCTGCTCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.04
20 24 0.96
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (20 bp):
TATCGATATATTTCCTAAGG
Found at i:108455106 original size:30 final size:30
Alignment explanation
Indices: 108455051--108455210 Score: 204
Period size: 29 Copynumber: 5.5 Consensus size: 30
108455041 ATAGTGAATC
108455051 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
108455080 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
108455110 CGTACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
108455139 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
108455167 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
108455197 CGCACACTTAGTGC
1 CGCACACTTAGTGC
108455211 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 46 0.39
30 46 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:108463021 original size:30 final size:30
Alignment explanation
Indices: 108462966--108463125 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
108462956 ATAGTGAATC
108462966 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
108462995 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
108463025 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
108463054 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
108463082 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
108463112 CGCACACTTAGTGC
1 CGCACACTTAGTGC
108463126 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:108463058 original size:59 final size:57
Alignment explanation
Indices: 108462966--108463125 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
108462956 ATAGTGAATC
*
108462966 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
108463025 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
108463082 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
108463126 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:108474147 original size:9 final size:10
Alignment explanation
Indices: 108474127--108474168 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
108474117 CATCTTTTGT
108474127 AATAATTAAA
1 AATAATTAAA
*
108474137 AATAATAAAA
1 AATAATTAAA
*
108474147 AATATTTAAA
1 AATAATTAAA
*
108474157 AA-AATTACA
1 AATAATTAAA
108474166 AAT
1 AAT
108474169 TAAAAAATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (10 bp):
AATAATTAAA
Found at i:108475939 original size:30 final size:30
Alignment explanation
Indices: 108475898--108475957 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
108475888 TTTATTGTTA
*
108475898 AATTTTTTTATTATTTTAAAGACATTTGCT
1 AATTTTGTTATTATTTTAAAGACATTTGCT
* * *
108475928 AATTTTGTTATTGTTTTAGAGGCATTTGCT
1 AATTTTGTTATTATTTTAAAGACATTTGCT
108475958 TGTTAAATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.07, G:0.13, T:0.55
Consensus pattern (30 bp):
AATTTTGTTATTATTTTAAAGACATTTGCT
Found at i:108476100 original size:12 final size:12
Alignment explanation
Indices: 108476079--108476112 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
108476069 TATATATTTT
*
108476079 AAATTTATATAA
1 AAATTAATATAA
108476091 AAATTAATATAA
1 AAATTAATATAA
108476103 AAATTAATAT
1 AAATTAATAT
108476113 GGGCGGACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAATTAATATAA
Found at i:108476953 original size:18 final size:19
Alignment explanation
Indices: 108476925--108476974 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
108476915 TGTGACGGAT
*
108476925 ATAACTTAAAAAATA-AAA
1 ATAATTTAAAAAATATAAA
*
108476943 ATATTTTAAAAAATATAAA
1 ATAATTTAAAAAATATAAA
*
108476962 TTAATTTAAAAAA
1 ATAATTTAAAAAA
108476975 AGTATATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAATTTAAAAAATATAAA
Found at i:108477640 original size:9 final size:9
Alignment explanation
Indices: 108477609--108477651 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
108477599 CCTTATTTTA
108477609 ATATAT-AT
1 ATATATGAT
108477617 ATATAT-AT
1 ATATATGAT
108477625 ATATATGAT
1 ATATATGAT
*
108477634 ATGTATGAT
1 ATATATGAT
*
108477643 GTATATGAT
1 ATATATGAT
108477652 GAGCAATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
8 14 0.45
9 17 0.55
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (9 bp):
ATATATGAT
Found at i:108478291 original size:15 final size:14
Alignment explanation
Indices: 108478254--108478300 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
108478244 GAGAGAATAG
108478254 AAAAT-AAAGAAAA
1 AAAATAAAAGAAAA
** *
108478267 AAAAGGAAAGCTAAA
1 AAAATAAAAG-AAAA
108478282 AAAATAAAAGAAAA
1 AAAATAAAAGAAAA
108478296 AAAAT
1 AAAAT
108478301 TAAATTGCTC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
13 4 0.15
14 12 0.44
15 11 0.41
ACGTcount: A:0.79, C:0.02, G:0.11, T:0.09
Consensus pattern (14 bp):
AAAATAAAAGAAAA
Found at i:108480586 original size:3 final size:3
Alignment explanation
Indices: 108480578--108480611 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
108480568 CCCTTGTCCT
**
108480578 TCA TCA TCA TCA TTG TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
108480612 TTTGATCACC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.38
Consensus pattern (3 bp):
TCA
Found at i:108483227 original size:19 final size:18
Alignment explanation
Indices: 108483196--108483346 Score: 53
Period size: 17 Copynumber: 7.9 Consensus size: 18
108483186 CTAGAAGCAT
108483196 TATAAAAATTTATTAAAAA
1 TATAAAAATTTA-TAAAAA
*
108483215 TATAGAAAA-TTATAAAATT
1 TATA-AAAATTTATAAAA-A
*
108483234 TATTGACAAAA-ATATATAAAA
1 TA-T-A-AAAATTTATA-AAAA
* *
108483255 TATCAAAA--TAAAAATAA
1 TATAAAAATTTATAAA-AA
*
108483272 TATTAAAATATTTTTTTAAAAA
1 TA-TAAAA-A--TTTATAAAAA
*
108483294 TTATATAAA-TTATAAAAA
1 -TATAAAAATTTATAAAAA
* *
108483312 TATATAAATTTA-AAAAC
1 TATAAAAATTTATAAAAA
*
108483329 TGTAAAAATTATATAAAA
1 TATAAAAATT-TATAAAA
108483347 TATTTAAAAT
Statistics
Matches: 102, Mismatches: 14, Indels: 32
0.69 0.09 0.22
Matches are distributed among these distances:
16 2 0.02
17 27 0.26
18 26 0.25
19 14 0.14
20 6 0.06
21 12 0.12
22 9 0.09
23 6 0.06
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
TATAAAAATTTATAAAAA
Found at i:108483248 original size:31 final size:29
Alignment explanation
Indices: 108483194--108483263 Score: 81
Period size: 31 Copynumber: 2.4 Consensus size: 29
108483184 AACTAGAAGC
108483194 ATTATAAAAATTTATTAAAAATATAGAAA
1 ATTATAAAAATTTATTAAAAATATAGAAA
*
108483223 ATTAT-AAAATTTATTGACAAAAATATATAAA
1 ATTATAAAAATTTATT---AAAAATATAGAAA
*
108483254 A-TATCAAAAT
1 ATTATAAAAAT
108483264 AAAAATAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
28 10 0.28
29 5 0.14
30 3 0.08
31 18 0.50
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (29 bp):
ATTATAAAAATTTATTAAAAATATAGAAA
Found at i:108483319 original size:10 final size:10
Alignment explanation
Indices: 108483288--108483445 Score: 58
Period size: 9 Copynumber: 16.6 Consensus size: 10
108483278 AATATTTTTT
108483288 TAAAAAT-TA
1 TAAAAATATA
*
108483297 TATAAAT-TA
1 TAAAAATATA
108483306 TAAAAATATA
1 TAAAAATATA
108483316 T--AAAT-T-
1 TAAAAATATA
* *
108483322 TAAAAA-CTG
1 TAAAAATATA
108483331 TAAAAAT-TA
1 TAAAAATATA
108483340 TATAAAATAT-
1 TA-AAAATATA
*
108483350 TTAAAATATA
1 TAAAAATATA
* * *
108483360 GATAATTAT-
1 TAAAAATATA
108483369 TAAAAATA-A
1 TAAAAATATA
*
108483378 TAATAAA-ATT
1 TAA-AAATATA
108483388 TATAAAATATTA
1 TA-AAAATA-TA
*
108483400 TAAAAA-AGCA
1 TAAAAATA-TA
108483410 TAAAAAT-TA
1 TAAAAATATA
*
108483419 TAAAACAAAT-
1 TAAAA-ATATA
108483429 TAAAAATATA
1 TAAAAATATA
108483439 TGAAAAA
1 T-AAAAA
108483446 AATTACAGAA
Statistics
Matches: 111, Mismatches: 18, Indels: 38
0.66 0.11 0.23
Matches are distributed among these distances:
6 1 0.01
7 1 0.01
8 8 0.07
9 48 0.43
10 37 0.33
11 13 0.12
12 3 0.03
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (10 bp):
TAAAAATATA
Found at i:108483338 original size:17 final size:16
Alignment explanation
Indices: 108483286--108483327 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 16
108483276 AAAATATTTT
108483286 TTTAAAAATTATATAAA
1 TTTAAAAA-TATATAAA
108483303 TTATAAAAATATATAAA
1 TT-TAAAAATATATAAA
108483320 TTTAAAAA
1 TTTAAAAA
108483328 CTGTAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.25
17 12 0.50
18 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TTTAAAAATATATAAA
Found at i:108483354 original size:20 final size:19
Alignment explanation
Indices: 108483285--108483420 Score: 62
Period size: 19 Copynumber: 6.7 Consensus size: 19
108483275 TAAAATATTT
108483285 TTTTAAAAATTATAT-AAA
1 TTTTAAAAATTATATAAAA
*
108483303 TTATAAAAATATATAAATTTAAAAA
1 TTTTAAAAAT-TAT--A--T-AAAA
* *
108483328 CTGTAAAAATTATATAAAA
1 TTTTAAAAATTATATAAAA
* *
108483347 TATTT-AAAA-TATAGATAA
1 T-TTTAAAAATTATATAAAA
*
108483365 TTATTAAAAATAATAATAAAA
1 TT-TTAAAAATTAT-ATAAAA
*
108483386 TTTATAAAATATTATAAAAAA
1 TTT-TAAAA-ATTATATAAAA
***
108483407 GCATAAAAATTATA
1 TTTTAAAAATTATA
108483421 AAACAAATTA
Statistics
Matches: 89, Mismatches: 15, Indels: 27
0.68 0.11 0.21
Matches are distributed among these distances:
17 1 0.01
18 19 0.21
19 21 0.24
20 11 0.12
21 17 0.19
22 5 0.06
23 1 0.01
24 3 0.03
25 11 0.12
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.36
Consensus pattern (19 bp):
TTTTAAAAATTATATAAAA
Found at i:108483394 original size:9 final size:10
Alignment explanation
Indices: 108483340--108483423 Score: 61
Period size: 9 Copynumber: 8.7 Consensus size: 10
108483330 GTAAAAATTA
108483340 TATAAAATAT
1 TATAAAATAT
108483350 T-TAAAATA-
1 TATAAAATAT
* *
108483358 TAGATAATTAT
1 TATA-AAATAT
108483369 TA-AAAATAAT
1 TATAAAAT-AT
*
108483379 AATAAAAT-T
1 TATAAAATAT
108483388 TATAAAATAT
1 TATAAAATAT
* *
108483398 TATAAAAAAG
1 TATAAAATAT
*
108483408 CATAAAA-AT
1 TATAAAATAT
108483417 TATAAAA
1 TATAAAA
108483424 CAAATTAAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
8 1 0.02
9 26 0.45
10 24 0.41
11 7 0.12
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (10 bp):
TATAAAATAT
Found at i:108483448 original size:20 final size:19
Alignment explanation
Indices: 108483331--108483450 Score: 77
Period size: 19 Copynumber: 6.1 Consensus size: 19
108483321 TTAAAAACTG
*
108483331 TAAAAAT-TATATAAAATAT
1 TAAAAATATATA-AAAAAAT
* * * **
108483350 TTAAAATATAGATAATTAT
1 TAAAAATATATAAAAAAAT
*
108483369 TAAAAATA-ATAATAAAATT
1 TAAAAATATATAA-AAAAAT
108483388 TATAAAATATTATAAAAAAGCA-
1 TA-AAAATA-TATAAAAAA--AT
108483410 TAAAAAT-TATAAAACAAAT
1 TAAAAATATATAAAA-AAAT
108483429 TAAAAATATATGAAAAAAAT
1 TAAAAATATAT-AAAAAAAT
108483449 TA
1 TA
108483451 CAGAAATCAT
Statistics
Matches: 79, Mismatches: 11, Indels: 21
0.71 0.10 0.19
Matches are distributed among these distances:
18 3 0.04
19 37 0.47
20 20 0.25
21 13 0.16
22 6 0.08
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (19 bp):
TAAAAATATATAAAAAAAT
Found at i:108486946 original size:23 final size:25
Alignment explanation
Indices: 108486900--108486946 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
108486890 AAACAAAACA
108486900 AAAGAAAACAAGCAAAAATATTTTG
1 AAAGAAAACAAGCAAAAATATTTTG
*
108486925 AAAGAAAA-AAG-AACAATATTTT
1 AAAGAAAACAAGCAAAAATATTTT
108486947 TAAGGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
24 3 0.14
25 8 0.38
ACGTcount: A:0.62, C:0.06, G:0.11, T:0.21
Consensus pattern (25 bp):
AAAGAAAACAAGCAAAAATATTTTG
Found at i:108491028 original size:19 final size:21
Alignment explanation
Indices: 108491004--108491042 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
108490994 AAAGAATCAC
108491004 TTAGGA-AATAGAAA-ATAAG
1 TTAGGAGAATAGAAATATAAG
*
108491023 TTAGGAGAATTGAAATATAA
1 TTAGGAGAATAGAAATATAA
108491043 CTCGTTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.54, C:0.00, G:0.21, T:0.26
Consensus pattern (21 bp):
TTAGGAGAATAGAAATATAAG
Found at i:108491531 original size:2 final size:2
Alignment explanation
Indices: 108491524--108491566 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
108491514 GCATGTGGTT
108491524 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
108491566 T
1 T
108491567 GTCTTGGATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:108500497 original size:18 final size:17
Alignment explanation
Indices: 108500457--108500498 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
108500447 GTTTAGAAAT
108500457 TATTTTTATCATATTAA
1 TATTTTTATCATATTAA
108500474 TAATTTTTAT-AGTAATTAA
1 T-ATTTTTATCA-T-ATTAA
108500493 TATTTT
1 TATTTT
108500499 AAATATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 6 0.27
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (17 bp):
TATTTTTATCATATTAA
Found at i:108501825 original size:16 final size:18
Alignment explanation
Indices: 108501790--108501828 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
108501780 ATCCTTATTT
108501790 AAATAAAATACAATAGTA
1 AAATAAAATACAATAGTA
108501808 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
108501824 AAATA
1 AAATA
108501829 CATATAGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 9 0.43
17 2 0.10
18 10 0.48
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:108503160 original size:29 final size:30
Alignment explanation
Indices: 108503113--108503180 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
108503103 TGGCCCAAGA
* * *
108503113 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
108503143 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
108503173 GCAAATAT
1 GTAAATAT
108503181 TTTAAGGGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:108510439 original size:19 final size:18
Alignment explanation
Indices: 108510405--108510478 Score: 78
Period size: 19 Copynumber: 3.9 Consensus size: 18
108510395 GTACGATTTT
*
108510405 ATGCACTTACGTGCCAGG
1 ATGCACTTATGTGCCAGG
108510423 ATGCACTTCATGTGCCAGG
1 ATGCACTT-ATGTGCCAGG
* *
108510442 ATGC-CCTATGTACGCCAGT
1 ATGCACTTATGT--GCCAGG
108510461 ATGCACTTTATGTGCCAG
1 ATGCAC-TTATGTGCCAG
108510479 TTTCCTTTAC
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
17 4 0.09
18 10 0.21
19 27 0.57
20 1 0.02
21 5 0.11
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (18 bp):
ATGCACTTATGTGCCAGG
Found at i:108510875 original size:6 final size:6
Alignment explanation
Indices: 108510864--108510893 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
108510854 CCACTAATCG
108510864 AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA
108510894 TTTAGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:108513327 original size:39 final size:39
Alignment explanation
Indices: 108513246--108513408 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
108513236 TATGGTAACC
* * *
108513246 CGCACAAATGCCTTCAGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTC-GGGCTTAGCCCGGATATCACAACT
* *
108513286 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
108513325 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
108513364 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
108513403 CGCACA
1 CGCACA
108513409 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 101 0.88
40 14 0.12
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:108516624 original size:24 final size:24
Alignment explanation
Indices: 108516596--108516641 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
108516586 ATATCAATCC
108516596 ATTTAC-ATTATAAATAACATAATA
1 ATTTACAATT-TAAATAACATAATA
108516620 ATTTACAATTTAAATAACATAA
1 ATTTACAATTTAAATAACATAA
108516642 CCATGATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
24 18 0.86
25 3 0.14
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (24 bp):
ATTTACAATTTAAATAACATAATA
Found at i:108519804 original size:24 final size:24
Alignment explanation
Indices: 108519761--108519816 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
108519751 ACCCTTGTAA
* *
108519761 CGGGAAGCTCACACATAGCC-ATTT
1 CGGGAAGCTCACAAAGAGCCTA-TT
*
108519785 CGGGAAGCTCATAAAGAGCCTATT
1 CGGGAAGCTCACAAAGAGCCTATT
108519809 -GGGAAGCT
1 CGGGAAGCT
108519817 TATCTGGCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 8 0.29
24 19 0.68
25 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (24 bp):
CGGGAAGCTCACAAAGAGCCTATT
Found at i:108519882 original size:24 final size:24
Alignment explanation
Indices: 108519845--108519910 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
108519835 AGTAGCTCAT
* *
108519845 AAGAGCCATAATCAGGAAGTTTACA
1 AAGAACCAT-ATCAGGAAGTTCACA
*
108519870 AAGAACCTTATCAGGAAGTTCACA
1 AAGAACCATATCAGGAAGTTCACA
*
108519894 AAGAACCATATCGGGAA
1 AAGAACCATATCAGGAA
108519911 TCTCAGGATA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 29 0.81
25 7 0.19
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (24 bp):
AAGAACCATATCAGGAAGTTCACA
Found at i:108520902 original size:27 final size:27
Alignment explanation
Indices: 108520854--108520967 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
108520844 GCAAGGCTGC
* * *
108520854 CAGATATTGTGACGGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
108520881 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
108520907 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
** *
108520934 CAGATAATTGTGGCCTAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
108520961 CAGATAT
1 CAGATAT
108520968 CAGGACAGAT
Statistics
Matches: 77, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
26 10 0.13
27 65 0.84
28 2 0.03
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:108520944 original size:54 final size:53
Alignment explanation
Indices: 108520854--108520967 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 53
108520844 GCAAGGCTGC
* *
108520854 CAGATATTGTGACGGAGTCACCAGATACAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCACCAGAA
* ** *
108520907 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCCTAGCCACCAGGA
1 CAGATAT-TGTGACAGAGCCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
108520961 CAGATAT
1 CAGATAT
108520968 CAGGACAGAT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 12 0.23
54 41 0.77
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19
Consensus pattern (53 bp):
CAGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCACCAGAA
Found at i:108520996 original size:93 final size:92
Alignment explanation
Indices: 108520880--108521059 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 92
108520870 GTCACCAGAT
108520880 ACAGATATTGTGGCAGAGCCACCAGAACAGAT-ATATGTGGCAGAGCCACC-AGATCAGATA-AT
1 ACAGATATTGTGGCAGAGCCACCAGAACAGATAAT-TGTGGCAGAGCCACCAAGA-CAGATATA-
**
108520942 TGTGGCCTAGCCACCAGGA-CAGATATCAGG
63 TGTGGCAGAGCCACCA-GATCAGATATCAGG
* **
108520972 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCCTAGCCACCAAGACAGATATATG
1 ACAGATAT-TGTGGCAGAGCCACCAGAACAGATAATTGTGGCAGAGCCACCAAGACAGATATATG
108521037 TGGCAGAGCCACCAGATCAGATA
65 TGGCAGAGCCACCAGATCAGATA
108521060 ATTGTGGCAT
Statistics
Matches: 78, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
92 10 0.13
93 62 0.79
94 6 0.08
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (92 bp):
ACAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGGCAGAGCCACCAAGACAGATATATGT
GGCAGAGCCACCAGATCAGATATCAGG
Found at i:108521003 original size:27 final size:27
Alignment explanation
Indices: 108520973--108521078 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 27
108520963 GATATCAGGA
108520973 CAGAT-ATATGTGGCAGAGCCACCAGAT
1 CAGATAAT-TGTGGCAGAGCCACCAGAT
**
108521000 CAGATAATTGTGGCCTAGCCACCAAGA-
1 CAGATAATTGTGGCAGAGCCACC-AGAT
108521027 CAGAT-ATATGTGGCAGAGCCACCAGAT
1 CAGATAAT-TGTGGCAGAGCCACCAGAT
*
108521054 CAGATAATTGTGGCATAGCCACCAG
1 CAGATAATTGTGGCAGAGCCACCAG
108521079 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
26 5 0.07
27 57 0.83
28 7 0.10
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATAATTGTGGCAGAGCCACCAGAT
Found at i:108521011 original size:120 final size:119
Alignment explanation
Indices: 108520854--108521081 Score: 361
Period size: 120 Copynumber: 1.9 Consensus size: 119
108520844 GCAAGGCTGC
* *
108520854 CAGATATTGTGACGGAGTCACCAGATACAGATATTGTGGCAGAGCCACC-AGAACAGATATATGT
1 CAGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCACCAAG-ACAGATATATGT
*
108520918 GGCAGAGCCACCAGATCAGATAATTGTGGCCTAGCCACCAGGACAGATATCAGGA
65 GGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATCAGGA
* **
108520973 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCCTAGCCACCAAGACAGATATATG
1 CAGATAT-TGTGACAGAGCCACCAGATACAGAT-ATTGTGGCAGAGCCACCAAGACAGATATATG
108521037 TGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
64 TGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
108521082 GCTTCCTCCA
Statistics
Matches: 100, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
119 12 0.12
120 86 0.86
121 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.18
Consensus pattern (119 bp):
CAGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCACCAAGACAGATATATGTG
GCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATCAGGA
Found at i:108521012 original size:66 final size:66
Alignment explanation
Indices: 108520906--108521033 Score: 247
Period size: 66 Copynumber: 1.9 Consensus size: 66
108520896 AGCCACCAGA
*
108520906 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCCTAGCCACCAGGACAGATATCAG
1 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCCTAGCCACCAAGACAGATATCAG
108520971 G
66 G
108520972 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCCTAGCCACCAAGACAGATAT
1 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCCTAGCCACCAAGACAGATAT
108521034 ATGTGGCAGA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (66 bp):
ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCCTAGCCACCAAGACAGATATCAG
G
Found at i:108521053 original size:54 final size:54
Alignment explanation
Indices: 108520971--108521077 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
108520961 CAGATATCAG
*
108520971 GACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCCTAGCCACCAA
1 GACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAA
108521025 GACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCA
1 GACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCA
108521078 GGACGCTTCC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (54 bp):
GACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAA
Found at i:108522708 original size:26 final size:26
Alignment explanation
Indices: 108522677--108522784 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
108522667 TGAAATTCCC
*
108522677 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
108522703 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
108522729 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
108522755 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
108522781 ATCA
1 ATCA
108522785 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:108524906 original size:43 final size:43
Alignment explanation
Indices: 108524840--108525196 Score: 261
Period size: 43 Copynumber: 8.3 Consensus size: 43
108524830 TATGTGAAAA
* ***
108524840 AAACGCCGCTAAAGAATATGACCTTTAGCGGCGCTTTGCCCAT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAT
* * * *
108524883 AAACCCCGCTAAAGAACATGACCTTTAGTGGCACTTTTTTCAT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAT
** * * *
108524926 AATTGCCGCTATAGAACATGACCTTTAGCAGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAT
* * * * * * *
108524969 AAATGCTGCTAAAGAACATGACCTTTAGCGGTGTTTTTTTAAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAT
* * * * * * *
108525012 AAATGCCACTATAGAACATGTCCTTTAGCAGCGGTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAT
* * * * *
108525055 AAACACCGCTAAAGAACATGACTTTTAGCAGC-ATTTTA-CAAAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATC--AT
* * * * ** * *
108525098 AAACACCGCTATAGAGCATGACTTTTAGCGGCATTTTTTTCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAT
* * * *
108525141 AAACGCCACTAAAGAACA-GTACCTTTAGTGGCGCTTTTATTAC
1 AAACGCCGCTAAAGAACATG-ACCTTTAGCGGCGCTTTTATCAT
*
108525184 AAACGCCGTTAAA
1 AAACGCCGCTAAA
108525197 AGTACCGTTC
Statistics
Matches: 252, Mismatches: 57, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
41 1 0.00
42 6 0.02
43 240 0.95
44 4 0.02
45 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAT
Found at i:108524989 original size:86 final size:86
Alignment explanation
Indices: 108524844--108525191 Score: 306
Period size: 86 Copynumber: 4.0 Consensus size: 86
108524834 TGAAAAAAAC
* * * *** * *
108524844 GCCGCTAAAGAATATGACCTTTAGCGGCGCTTTGCCCATAAACCCCGCTAAAGAACATGACCTTT
1 GCCGCTATAGAACATGACCTTTAGCAGCGCTTTTATCACAAACACCGCTAAAGAACATGACCTTT
* * * *
108524909 AGTGGCACTTTTTTCATAATT
66 AGCGGCACTTTTTTAACAAAT
** *
108524930 GCCGCTATAGAACATGACCTTTAGCAGCGCTTTTATCACAAATGCTGCTAAAGAACATGACCTTT
1 GCCGCTATAGAACATGACCTTTAGCAGCGCTTTTATCACAAACACCGCTAAAGAACATGACCTTT
***
108524995 AGCGGTGTTTTTTTAACAAAT
66 AGCGGCACTTTTTTAACAAAT
* * * *
108525016 GCCACTATAGAACATGTCCTTTAGCAGCGGTTTTATCACAAACACCGCTAAAGAACATGACTTTT
1 GCCGCTATAGAACATGACCTTTAGCAGCGCTTTTATCACAAACACCGCTAAAGAACATGACCTTT
* ** *
108525081 AGCAGCA-TTTTACAAACAAAC
66 AGCGGCACTTTT-TTAACAAAT
* * * * ** * * *
108525102 ACCGCTATAGAGCATGACTTTTAGCGGCATTTTTTTCACAAACGCCACTAAAGAACA-GTACCTT
1 GCCGCTATAGAACATGACCTTTAGCAGCGCTTTTATCACAAACACCGCTAAAGAACATG-ACCTT
* * *
108525166 TAGTGGCGCTTTTATT-ACAAAC
65 TAGCGGCACTTTT-TTAACAAAT
108525188 GCCG
1 GCCG
108525192 TTAAAAGTAC
Statistics
Matches: 211, Mismatches: 48, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
85 5 0.02
86 201 0.95
87 5 0.02
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (86 bp):
GCCGCTATAGAACATGACCTTTAGCAGCGCTTTTATCACAAACACCGCTAAAGAACATGACCTTT
AGCGGCACTTTTTTAACAAAT
Found at i:108525031 original size:129 final size:128
Alignment explanation
Indices: 108524840--108525196 Score: 322
Period size: 129 Copynumber: 2.8 Consensus size: 128
108524830 TATGTGAAAA
* * ** **** * * *
108524840 AAACGCCGCTAAAGAATATGACCTTTAGCGGCGCTTTGCCCATAAACCCCGCTAAAGAACATGAC
1 AAACACCGCTAAAGAACATGACCTTTAGCGGCATTTTTTTAACAAACGCCACTAAAGAACATGAC
* * * *** * *
108524905 CTTTAGTGGCACTTTTTTCATAATTGCCGCTATAGAACATGACCTTTAGCAGCGCTTTTATC-AC
66 CTTTAGTGGCGCTTTTATCACAAACACCGCTAAAGAACATGACCTTTAGCAGC-ATTTTA-CAAC
** * ** * * *
108524969 AAATGCTGCTAAAGAACATGACCTTTAGCGGTGTTTTTTTAACAAATGCCACTATAGAACATGTC
1 AAACACCGCTAAAGAACATGACCTTTAGCGGCATTTTTTTAACAAACGCCACTAAAGAACATGAC
** * *
108525034 CTTTAGCAGCGGTTTTATCACAAACACCGCTAAAGAACATGACTTTTAGCAGCATTTTACAAAC
66 CTTTAGTGGCGCTTTTATCACAAACACCGCTAAAGAACATGACCTTTAGCAGCATTTTAC-AAC
* * * *
108525098 AAACACCGCTATAGAGCATGACTTTTAGCGGCATTTTTTTCACAAACGCCACTAAAGAACA-GTA
1 AAACACCGCTAAAGAACATGACCTTTAGCGGCATTTTTTTAACAAACGCCACTAAAGAACATG-A
* * *
108525162 CCTTTAGTGGCGCTTTTATTACAAACGCCGTTAAA
65 CCTTTAGTGGCGCTTTTATCACAAACACCGCTAAA
108525197 AGTACCGTTC
Statistics
Matches: 180, Mismatches: 45, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
127 1 0.01
128 6 0.03
129 173 0.96
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (128 bp):
AAACACCGCTAAAGAACATGACCTTTAGCGGCATTTTTTTAACAAACGCCACTAAAGAACATGAC
CTTTAGTGGCGCTTTTATCACAAACACCGCTAAAGAACATGACCTTTAGCAGCATTTTACAAC
Found at i:108525560 original size:21 final size:21
Alignment explanation
Indices: 108525531--108525571 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
108525521 TTCTGCTCTG
*
108525531 CTCTGCTTCCCTCGCTGCTGT
1 CTCTACTTCCCTCGCTGCTGT
* *
108525552 CTCTACTTCCTTTGCTGCTG
1 CTCTACTTCCCTCGCTGCTG
108525572 CCTCCGCTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.02, C:0.39, G:0.17, T:0.41
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTGCTGT
Found at i:108526042 original size:13 final size:14
Alignment explanation
Indices: 108526016--108526044 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
108526006 ACTAACGATG
108526016 AATTAAACCATTAT
1 AATTAAACCATTAT
108526030 AATTAAA-CATTAT
1 AATTAAACCATTAT
108526043 AA
1 AA
108526045 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:108541852 original size:9 final size:9
Alignment explanation
Indices: 108541838--108541943 Score: 85
Period size: 9 Copynumber: 11.8 Consensus size: 9
108541828 TAAGTATAAT
108541838 TAAGTTATG
1 TAAGTTATG
108541847 TAAGTTATG
1 TAAGTTATG
* * *
108541856 ATATGATATA
1 -TAAGTTATG
*
108541866 T-ATTTATG
1 TAAGTTATG
108541874 T-A-TTATG
1 TAAGTTATG
*
108541881 TAAGTAATG
1 TAAGTTATG
108541890 TAAGTTATG
1 TAAGTTATG
108541899 TAAGTTATG
1 TAAGTTATG
108541908 TAAGTTATG
1 TAAGTTATG
* *
108541917 ATATGATATATT
1 -TAAG-T-TATG
108541929 TAAGTTAT-
1 TAAGTTATG
108541937 TAAGTTA
1 TAAGTTA
108541944 AGATCCAAAG
Statistics
Matches: 79, Mismatches: 12, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
7 6 0.08
8 13 0.16
9 43 0.54
10 10 0.13
11 4 0.05
12 3 0.04
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:108545067 original size:64 final size:64
Alignment explanation
Indices: 108544994--108545348 Score: 170
Period size: 64 Copynumber: 5.3 Consensus size: 64
108544984 CTGGGCCAGA
* *
108544994 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAATAGTATGGCCCATAG
1 GCCCATTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
** * ** *
108545058 GCCCATTTCAAAATACGTGCAACATCAGTAAACATATG-C-AAG-CCC--ATTTGGGTAACAGAG
1 GCCCATTTC-AAAT---T---ACA--A-TAAAC-TGGGCCTTAGCCCCTTATTCAGATAAC--A-
* *
108545118 GTACTGGGCCAGA-
52 GTA-TGGCCCATAG
* *
108545131 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * *** * * ** *
108545195 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCC-TATTTGGGTAACAGTGGTA
1 GCCCATTTCAAATTACAAT--AA-A-CTG-GGCCTTA-GC--CCCTTATTCAGATAACA---GTA
*
108545258 CTGGCCCAGA-
55 -TGGCCCATAG
* *
108545268 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
*
108545332 GCCCATTTCAAAATACA
1 GCCCATTTCAAATTACA
108545349 TGCAACATTA
Statistics
Matches: 206, Mismatches: 49, Indels: 72
0.63 0.15 0.22
Matches are distributed among these distances:
62 2 0.01
63 23 0.11
64 44 0.21
65 10 0.05
66 6 0.03
67 20 0.10
68 6 0.03
69 6 0.03
70 19 0.09
71 6 0.03
72 9 0.04
73 30 0.15
74 23 0.11
75 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:108545206 original size:137 final size:137
Alignment explanation
Indices: 108544960--108545383 Score: 758
Period size: 137 Copynumber: 3.1 Consensus size: 137
108544950 CATTGGGCCT
** *
108544960 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
108545025 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACGTGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
108545090 CATATGC
131 CATATGC
*
108545097 AAGCCCATTTGGGTAACAGAGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
108545162 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
108545227 CATATGC
131 CATATGC
* *
108545234 AAGCCTATTTGGGTAACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
108545299 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATTAATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
108545364 CATATGC
131 CATATGC
108545371 AAGCCCATTTGGG
1 AAGCCCATTTGGG
108545384 GAAACTACTC
Statistics
Matches: 275, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 275 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:108545668 original size:25 final size:27
Alignment explanation
Indices: 108545631--108545683 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
108545621 TCAAACATGC
108545631 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
108545657 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
108545683 A
1 A
108545684 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:108547204 original size:26 final size:26
Alignment explanation
Indices: 108547168--108547277 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
108547158 CATGAAATTC
108547168 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
108547194 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
108547220 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
108547246 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
108547272 TTATCA
1 TTATCA
108547278 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:108551305 original size:64 final size:64
Alignment explanation
Indices: 108551232--108551440 Score: 147
Period size: 64 Copynumber: 3.1 Consensus size: 64
108551222 CTGGGCCAGA
* *
108551232 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACAGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * *** * ** *
108551296 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CAG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
*
108551358 ACTGGCCCAGA-
54 A-TGGCCCATAG
* *
108551369 GCCCTTTTCAGATTACAATAAACCGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACAGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
108551433 GCCCATTT
1 GCCCATTT
108551441 TAAAAAACAT
Statistics
Matches: 103, Mismatches: 25, Indels: 34
0.64 0.15 0.21
Matches are distributed among these distances:
63 10 0.10
64 23 0.22
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 10 0.10
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACAGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:108551307 original size:137 final size:137
Alignment explanation
Indices: 108551061--108551484 Score: 749
Period size: 137 Copynumber: 3.1 Consensus size: 137
108551051 CATTGGGCCT
** *
108551061 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* *
108551126 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACCTGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
108551191 CATATGC
131 CATATGC
*
108551198 AAGCCCATTTGGGTAACAGAGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
108551263 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
108551328 CATATGC
131 CATATGC
* *
108551335 AAGCCCATTTGGGTAACAGTGGTACTGGCCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
* * *
108551400 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTTAAAAAACATGCAACATCAATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
108551465 CATATGC
131 CATATGC
108551472 AAGCCCATTTGGG
1 AAGCCCATTTGGG
108551485 GAAACTACTC
Statistics
Matches: 275, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 275 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:108551769 original size:25 final size:27
Alignment explanation
Indices: 108551732--108551784 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
108551722 TCAAACATGC
108551732 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
108551758 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
108551784 A
1 A
108551785 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:108554749 original size:21 final size:21
Alignment explanation
Indices: 108554725--108554778 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
108554715 CATATACCCT
108554725 AAACTTTAAACCCAAAATAAC
1 AAACTTTAAACCCAAAATAAC
**
108554746 AAACTCCAAACCCAAAATAAC
1 AAACTTTAAACCCAAAATAAC
*
108554767 AAACCTTAAACC
1 AAACTTTAAACC
108554779 ATAAACTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.56, C:0.30, G:0.00, T:0.15
Consensus pattern (21 bp):
AAACTTTAAACCCAAAATAAC
Found at i:108554784 original size:28 final size:28
Alignment explanation
Indices: 108554753--108554811 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
108554743 AACAAACTCC
*
108554753 AAACCCAAAATAAC-AAACCTTAAACCAT
1 AAACCCAAAAT-ACTAAACATTAAACCAT
** *
108554781 AAACTTAAAATACTAAACATTAAACCCT
1 AAACCCAAAATACTAAACATTAAACCAT
108554809 AAA
1 AAA
108554812 TTGTAAGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 2 0.08
28 24 0.92
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.19
Consensus pattern (28 bp):
AAACCCAAAATACTAAACATTAAACCAT
Found at i:108555421 original size:41 final size:41
Alignment explanation
Indices: 108555376--108555495 Score: 111
Period size: 41 Copynumber: 2.9 Consensus size: 41
108555366 GCATTTGAAA
*
108555376 TAAAAGCGCCACTATTGACCAACTTTTTGCGACGTTTGGGC
1 TAAAAGCGCCACTATTGACCAACTTTTTGCGGCGTTTGGGC
* * ** * * *
108555417 TAAAAACACCA-TAATTG-CTTAGTTTTTAGCGGCATTTGGTC
1 TAAAAGCGCCACT-ATTGACCAACTTTTT-GCGGCGTTTGGGC
*
108555458 TAAAAGCGCCACAATT-ACTCAACTTTTTGCGGCGTTTG
1 TAAAAGCGCCACTATTGAC-CAACTTTTTGCGGCGTTTG
108555496 CTAAATCATA
Statistics
Matches: 59, Mismatches: 15, Indels: 10
0.70 0.18 0.12
Matches are distributed among these distances:
40 8 0.14
41 45 0.76
42 6 0.10
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (41 bp):
TAAAAGCGCCACTATTGACCAACTTTTTGCGGCGTTTGGGC
Found at i:108558230 original size:89 final size:91
Alignment explanation
Indices: 108558073--108558249 Score: 218
Period size: 90 Copynumber: 2.0 Consensus size: 91
108558063 AAACCTATGT
* * *
108558073 ACCATAATAAAGCACATATTAATAGTTTAAGTACTATATATGATACTTTTAAAGTACAAATACCA
1 ACCATAATAAAACACATATTAACAGTTTAAGTACTATATATGATACTTTTAAAATACAAATACCA
* *
108558138 CATT-GATATTTATGAACGTACATTA
66 CATTGGACATTTATGAAAGTACATTA
* * * *
108558163 ACCATAATAAAACACATATTGACAG-TTCAGTACTATAT-TGAATA-TTTTCAAAATGCAAATTC
1 ACCATAATAAAACACATATTAACAGTTTAAGTACTATATATG-ATACTTTT-AAAATACAAATAC
*
108558225 TACATTGGACATTTATGAAAGTACA
64 CACATTGGACATTTATGAAAGTACA
108558250 AAAACCAAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
88 6 0.08
89 30 0.41
90 38 0.51
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (91 bp):
ACCATAATAAAACACATATTAACAGTTTAAGTACTATATATGATACTTTTAAAATACAAATACCA
CATTGGACATTTATGAAAGTACATTA
Found at i:108563075 original size:52 final size:52
Alignment explanation
Indices: 108562997--108563102 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
108562987 AATTAAGTTG
108562997 ACAAATTATTAGGTTTTGGCATCGAAAGGTGGCTAATTAGATATGAATTCAT
1 ACAAATTATTAGGTTTTGGCATCGAAAGGTGGCTAATTAGATATGAATTCAT
108563049 ACAAATTATTAGGTTTTGGCATCGAAAGGTGGCTAATTAGATATGAATTCAT
1 ACAAATTATTAGGTTTTGGCATCGAAAGGTGGCTAATTAGATATGAATTCAT
108563101 AC
1 AC
108563103 TTAAAAGAAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (52 bp):
ACAAATTATTAGGTTTTGGCATCGAAAGGTGGCTAATTAGATATGAATTCAT
Found at i:108563496 original size:22 final size:23
Alignment explanation
Indices: 108563468--108563515 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
108563458 TTTGAAAAAA
108563468 TAAAAAAAATTAAAT-TTTGAGT
1 TAAAAAAAATTAAATATTTGAGT
**
108563490 TAAAAAAAATTAGTTATTTGAGT
1 TAAAAAAAATTAAATATTTGAGT
108563513 TAA
1 TAA
108563516 TCGAGTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (23 bp):
TAAAAAAAATTAAATATTTGAGT
Found at i:108563856 original size:19 final size:20
Alignment explanation
Indices: 108563826--108563866 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
108563816 CAAAAACTCT
* *
108563826 CAAAACTTTTTATTTTCTCC
1 CAAAACTTTTTACTTCCTCC
108563846 CAAAA-TTTTTACTTCCTCC
1 CAAAACTTTTTACTTCCTCC
108563865 CA
1 CA
108563867 CTTTCCCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.44
Consensus pattern (20 bp):
CAAAACTTTTTACTTCCTCC
Found at i:108563886 original size:30 final size:29
Alignment explanation
Indices: 108563839--108563896 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
108563829 AACTTTTTAT
* * *
108563839 TTTCTCCCAAAATTTTTACTTCCTCCCAC
1 TTTCCCCCAAAACTTTTACTCCCTCCCAC
108563868 TTTCCCCCTAAAACTTTTACTCCCTCCCA
1 TTTCCCCC-AAAACTTTTACTCCCTCCCA
108563897 TCCCACCCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.21, C:0.41, G:0.00, T:0.38
Consensus pattern (29 bp):
TTTCCCCCAAAACTTTTACTCCCTCCCAC
Found at i:108564964 original size:43 final size:41
Alignment explanation
Indices: 108564891--108564976 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 41
108564881 ATACATATCT
* * ** *
108564891 TTTATTTTATATATTAAAGACATCATTTTTTTTATTTCATAAA
1 TTTACTTTATATACTAAAGACAT-AAATTTTTAATTT-ATAAA
*
108564934 TTTACTTTATATACTAAAGAGATAAATTTTTAATTTATAAA
1 TTTACTTTATATACTAAAGACATAAATTTTTAATTTATAAA
108564975 TT
1 TT
108564977 AATTTTTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
41 7 0.19
42 10 0.27
43 20 0.54
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.52
Consensus pattern (41 bp):
TTTACTTTATATACTAAAGACATAAATTTTTAATTTATAAA
Done.