Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 357 of 425
Found at i:110254633 original size:27 final size:27
Alignment explanation
Indices: 110254600--110254661 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
110254590 ATTCACTAAA
110254600 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
110254627 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
110254653 ATACCCCTA
1 ATACCCCTA
110254662 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 22 0.69
27 8 0.25
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:110254834 original size:28 final size:28
Alignment explanation
Indices: 110254767--110254879 Score: 144
Period size: 27 Copynumber: 4.2 Consensus size: 28
110254757 GAGGAAGCGT
*
110254767 TCTGGTGGCTCTACCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
110254794 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
110254822 TCTGGTGGTTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * *
110254849 TCTGGTGACTCTGTCA-TAATATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
110254875 TCTGG
1 TCTGG
110254880 CAGCCAAGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
26 5 0.06
27 56 0.73
28 16 0.21
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:110254873 original size:54 final size:54
Alignment explanation
Indices: 110254765--110254879 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 54
110254755 TGGAGGAAGC
*
110254765 GTTCTGGTGGCTCTACCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTACCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
* * * *
110254819 GTTTCTGGTGGTTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCA-TAATATCT
1 G-TTCTGGTGGCTCTACCACAAATATCTG-ATCTGGTGACTCTGCCACAAATATCT
110254873 GTTCTGG
1 GTTCTGG
110254880 CAGCCAAGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 6 0.11
54 17 0.31
55 31 0.57
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTCTACCACAAATATCTGATCTGGTGACTCTGCCACAAATATCT
Found at i:110257061 original size:114 final size:114
Alignment explanation
Indices: 110256861--110257099 Score: 401
Period size: 114 Copynumber: 2.1 Consensus size: 114
110256851 CACACTTCAA
*
110256861 ATCATTTCATGACGCAAGAATGAAAATCATAAACTCTTTGCCCAGCGCAAGCTGAACCAGAACTG
1 ATCATATCATGACGCAAGAATGAAAATCATAAACTCTTTGCCCAGCGCAAGCTGAACCAGAACTG
*
110256926 ATGCTTCAGTTGACAATGTCTTCAACTGATTACCACTTTATTAATAATT
66 ATGCTTCAGTTGACAATGTCTTCAACTAATTACCACTTTATTAATAATT
* *
110256975 ATCATATCATGACGCATGACTGAAAATCATAAACTCTTTG-CCAG-GCACAGGCTGAACCAGAAC
1 ATCATATCATGACGCAAGAATGAAAATCATAAACTCTTTGCCCAGCGCA-A-GCTGAACCAGAAC
*
110257038 TGATGCTTCAGTTGACAATGTCTTCAACTAATTACCATTTTATTAATAATT
64 TGATGCTTCAGTTGACAATGTCTTCAACTAATTACCACTTTATTAATAATT
110257089 ATCATATCATG
1 ATCATATCATG
110257100 CAGACTTCAC
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
112 3 0.03
113 5 0.04
114 110 0.93
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (114 bp):
ATCATATCATGACGCAAGAATGAAAATCATAAACTCTTTGCCCAGCGCAAGCTGAACCAGAACTG
ATGCTTCAGTTGACAATGTCTTCAACTAATTACCACTTTATTAATAATT
Found at i:110258119 original size:21 final size:24
Alignment explanation
Indices: 110258085--110258128 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
110258075 TTCTGAGAAT
*
110258085 AAATATGCACATAG-AA-TGCCCA
1 AAATAAGCACATAGTAACTGCCCA
110258107 AAATAAGC-CATAGTAACTGCCC
1 AAATAAGCACATAGTAACTGCCC
110258129 GACTATAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 9 0.47
23 5 0.26
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.18
Consensus pattern (24 bp):
AAATAAGCACATAGTAACTGCCCA
Found at i:110260809 original size:28 final size:28
Alignment explanation
Indices: 110260769--110260839 Score: 124
Period size: 28 Copynumber: 2.5 Consensus size: 28
110260759 GAATCATTCG
110260769 ATATTTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
* *
110260797 ATATCTCGTACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
110260825 ATATTTCGCACACTA
1 ATATTTCGCACACTA
110260840 CGTGCCATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:110275276 original size:23 final size:22
Alignment explanation
Indices: 110275239--110275283 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
110275229 GAGAGGCATT
110275239 GGCATGGAAATGTCATGAGGATG
1 GGCATGGAAATGTCATG-GGATG
110275262 GGCATGGTAAA-GTCATGGGATG
1 GGCATGG-AAATGTCATGGGATG
110275284 AAGTTTCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 13 0.62
24 3 0.14
ACGTcount: A:0.29, C:0.09, G:0.40, T:0.22
Consensus pattern (22 bp):
GGCATGGAAATGTCATGGGATG
Found at i:110276858 original size:25 final size:25
Alignment explanation
Indices: 110276821--110276871 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
110276811 AGATGAATCA
110276821 ATCGGCTTCTTTGGAGTAATTCCTT
1 ATCGGCTTCTTTGGAGTAATTCCTT
*
110276846 ATCGGCTTTTTTGGAGTAATTCCTT
1 ATCGGCTTCTTTGGAGTAATTCCTT
110276871 A
1 A
110276872 CTCCCTCTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.45
Consensus pattern (25 bp):
ATCGGCTTCTTTGGAGTAATTCCTT
Found at i:110278750 original size:23 final size:23
Alignment explanation
Indices: 110278721--110278787 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
110278711 AGGTTATGAA
**
110278721 AAGAGAATGAATTTAGGTTTTAC
1 AAGAGAATGAATTTAGGAGTTAC
*
110278744 GAGAGAATGAATTTAGGAGTTAC
1 AAGAGAATGAATTTAGGAGTTAC
* *
110278767 AAAAGAATGAATTTGGGAGTT
1 AAGAGAATGAATTTAGGAGTT
110278788 TTGGGAGTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.30
Consensus pattern (23 bp):
AAGAGAATGAATTTAGGAGTTAC
Found at i:110280342 original size:27 final size:27
Alignment explanation
Indices: 110280324--110280588 Score: 361
Period size: 27 Copynumber: 9.9 Consensus size: 27
110280314 TTTACCAAAT
* * *
110280324 AGGGGTATTACGTTTATTTTACCCTAC
1 AGGGGCATTACGGTCATTTTACCCTAC
*
110280351 AGGAGCATTACGGTCATTTTACCCTAC
1 AGGGGCATTACGGTCATTTTACCCTAC
*
110280378 AGGGGCATTACGATCATTTTACCCTAC
1 AGGGGCATTACGGTCATTTTACCCTAC
* * *
110280405 AAGGGTATTACGGTCATTTTACCCTAT
1 AGGGGCATTACGGTCATTTTACCCTAC
* *
110280432 AGGGGTATTACGGTCATTTTACCCTAT
1 AGGGGCATTACGGTCATTTTACCCTAC
110280459 AGGGGCATTACGGTCATTTTACCCTAC
1 AGGGGCATTACGGTCATTTTACCCTAC
* *
110280486 AAGGGCATTA-GGTCATTTTATCCTAC
1 AGGGGCATTACGGTCATTTTACCCTAC
* * *
110280512 ATGGGTATTACGATCATTTTACCCTAC
1 AGGGGCATTACGGTCATTTTACCCTAC
*
110280539 AGGGGCATTACGGTCATTTTACCTTAC
1 AGGGGCATTACGGTCATTTTACCCTAC
* *
110280566 AAGGGTATTACGGTCATTTTACC
1 AGGGGCATTACGGTCATTTTACC
110280589 TTTTTAGGGT
Statistics
Matches: 212, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 23 0.11
27 189 0.89
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
AGGGGCATTACGGTCATTTTACCCTAC
Found at i:110280397 original size:81 final size:80
Alignment explanation
Indices: 110280326--110280588 Score: 402
Period size: 81 Copynumber: 3.3 Consensus size: 80
110280316 TACCAAATAG
* * * *
110280326 GGGTATTACGTTTATTTTACCCTACAGGAGCATTACGGTCATTTTACCCTACAGGGGCATTACGA
1 GGGTATTACGGTCATTTTACCCTACAGG-GTATTACGGTCATTTTACCCTACAGGGGCATTACGG
110280391 TCATTTTACCCTACAA
65 TCATTTTACCCTACAA
* *
110280407 GGGTATTACGGTCATTTTACCCTATAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGG
1 GGGTATTACGGTCATTTTACCCTACA-GGGTATTACGGTCATTTTACCCTACAGGGGCATTACGG
110280472 TCATTTTACCCTACAA
65 TCATTTTACCCTACAA
* * *
110280488 GGGCATTA-GGTCATTTTATCCTACATGGGTATTACGATCATTTTACCCTACAGGGGCATTACGG
1 GGGTATTACGGTCATTTTACCCTACA-GGGTATTACGGTCATTTTACCCTACAGGGGCATTACGG
*
110280552 TCATTTTACCTTACAA
65 TCATTTTACCCTACAA
110280568 GGGTATTACGGTCATTTTACC
1 GGGTATTACGGTCATTTTACC
110280589 TTTTTAGGGT
Statistics
Matches: 165, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
80 73 0.44
81 90 0.55
82 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (80 bp):
GGGTATTACGGTCATTTTACCCTACAGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGT
CATTTTACCCTACAA
Found at i:110294303 original size:40 final size:40
Alignment explanation
Indices: 110294246--110294391 Score: 156
Period size: 40 Copynumber: 3.6 Consensus size: 40
110294236 TCGAATGATG
*
110294246 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACTAAA
* * *
110294286 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTGACTAAA
* *
110294326 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTA-AA
* *
110294367 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
110294392 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
39 1 0.01
40 80 0.87
41 11 0.12
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:110294398 original size:80 final size:80
Alignment explanation
Indices: 110294246--110294414 Score: 186
Period size: 80 Copynumber: 2.1 Consensus size: 80
110294236 TCGAATGATG
* *
110294246 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
110294311 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * *
110294326 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTATAACCGGGCTATG-TCCCGAAGGTA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATAACCGGACTAAGAT-CCGAAGGCA
*
110294388 TTTGAACGAGTAGCTATA
63 TTTGAACGAGTAGCTAAA
110294406 TCC-GGTTAA
1 TCCGGGTTAA
110294415 ACTCCGAAGG
Statistics
Matches: 76, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
79 9 0.12
80 59 0.78
81 8 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:110294405 original size:40 final size:40
Alignment explanation
Indices: 110294247--110294410 Score: 122
Period size: 40 Copynumber: 4.1 Consensus size: 40
110294237 CGAATGATGT
** * *
110294247 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGCT-ACTATAA
* ** *
110294287 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* **
110294326 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
* * *
110294367 CCGGGCTATGTCCCGAAGGTATTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTA-CTATAA
110294407 CCGG
1 CCGG
110294411 TTAAACTCCG
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
39 4 0.04
40 90 0.86
41 11 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
Found at i:110298048 original size:25 final size:24
Alignment explanation
Indices: 110298020--110298118 Score: 81
Period size: 25 Copynumber: 4.0 Consensus size: 24
110298010 GAGCTTTCTG
110298020 ATATTTAGCTCACATGAGCTTCCC
1 ATATTTAGCTCACATGAGCTTCCC
* **
110298044 AATATTTACCTTGCATGAGCTTCCC
1 -ATATTTAGCTCACATGAGCTTCCC
* * * * * *
110298069 GATACTCAACTCCCATTACCTTCCC
1 -ATATTTAGCTCACATGAGCTTCCC
*
110298094 GTCATTTAGCTCACATGAGCTTCCC
1 AT-ATTTAGCTCACATGAGCTTCCC
110298119 GTATACAGCT
Statistics
Matches: 55, Mismatches: 18, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
24 1 0.02
25 54 0.98
ACGTcount: A:0.23, C:0.33, G:0.11, T:0.32
Consensus pattern (24 bp):
ATATTTAGCTCACATGAGCTTCCC
Found at i:110302096 original size:22 final size:22
Alignment explanation
Indices: 110302071--110302114 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
110302061 GGTTGACATG
110302071 TTCTTAAATTGTTATTTGAGGT
1 TTCTTAAATTGTTATTTGAGGT
110302093 TTCTTAAATTGTTATTTGAGGT
1 TTCTTAAATTGTTATTTGAGGT
110302115 GCCTAAGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.05, G:0.18, T:0.55
Consensus pattern (22 bp):
TTCTTAAATTGTTATTTGAGGT
Found at i:110305575 original size:37 final size:37
Alignment explanation
Indices: 110305525--110305645 Score: 224
Period size: 37 Copynumber: 3.2 Consensus size: 37
110305515 CCAATGAGAT
110305525 CCGGACATAATCTCCACACGTAGTCATCGGGTCTTAC
1 CCGGACATAATCTCCACACGTAGTCATCGGGTCTTAC
110305562 CCGGACATAATCTCCACACGTAGTCATCGGGTCTTAC
1 CCGGACATAATCTCCACACGTAGTCATCGGGTCTTAC
*
110305599 CCGGACATAATCTCCACACGTAGTCATCGGGTCTCAC
1 CCGGACATAATCTCCACACGTAGTCATCGGGTCTTAC
110305636 CCGGAACATA
1 CCGG-ACATA
110305646 TTTCCAAGTT
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
37 77 0.94
38 5 0.06
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (37 bp):
CCGGACATAATCTCCACACGTAGTCATCGGGTCTTAC
Found at i:110305743 original size:48 final size:48
Alignment explanation
Indices: 110305685--110305788 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
110305675 TGTTACAACA
110305685 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
110305733 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
110305781 TTCACATT
1 TTCACATT
110305789 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:110305837 original size:49 final size:49
Alignment explanation
Indices: 110305780--110306113 Score: 550
Period size: 49 Copynumber: 6.9 Consensus size: 49
110305770 CACACATATA
*
110305780 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
110305829 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* *
110305876 TTTCACATTCATCACATTGGCCATTAGGCCTTACCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
110305925 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
110305972 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
110306021 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* *
110306070 TTTCACATTCATCACATTGGTCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
110306114 CATCTCATAC
Statistics
Matches: 266, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 88 0.33
49 178 0.67
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:110305881 original size:96 final size:96
Alignment explanation
Indices: 110305780--110306113 Score: 569
Period size: 96 Copynumber: 3.5 Consensus size: 96
110305770 CACACATATA
* *
110305780 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
110305845 TCGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
* *
110305876 TTTCACATTCATCACATTGGCCATTAGGCCTTACCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
110305941 TTGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
110305972 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
110306037 TTGGCCATTAGGCCTTATCACATATATATACAC
66 TTGGCCATTAGGCCTTATCAC--ATATATACTC
* *
110306070 TTTCACATTCATCACATTGGTCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
110306114 CATCTCATAC
Statistics
Matches: 226, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
96 176 0.78
98 50 0.22
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACTC
Found at i:110305938 original size:145 final size:146
Alignment explanation
Indices: 110305780--110306113 Score: 557
Period size: 145 Copynumber: 2.3 Consensus size: 146
110305770 CACACATATA
*
110305780 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
110305845 TCGGCCATTAGGCCTTATCACA-TATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 TCGGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
*
110305909 CCACATGTATATACAC
131 CCACATATATATACAC
* *
110305925 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
110305988 TTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACA-GTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
*
110306053 ATCACATATATATACAC
130 ACCACATATATATACAC
* *
110306070 TTTCACATTCATCACATTGGTCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
110306114 CATCTCATAC
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
143 45 0.26
145 126 0.72
147 5 0.03
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
CCACATATATATACAC
Found at i:110311564 original size:21 final size:21
Alignment explanation
Indices: 110311538--110311585 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
110311528 AACTCCCTTC
110311538 GATGTCAC-AACATAACCTAGG
1 GATGTCACGAA-ATAACCTAGG
* *
110311559 GATGTCACGAAATAACTTGGG
1 GATGTCACGAAATAACCTAGG
110311580 GATGTC
1 GATGTC
110311586 GCGATACACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (21 bp):
GATGTCACGAAATAACCTAGG
Found at i:110318092 original size:14 final size:14
Alignment explanation
Indices: 110318073--110318101 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
110318063 ACCAATAGAG
110318073 TTCATACAAACCTC
1 TTCATACAAACCTC
110318087 TTCATACAAACCTC
1 TTCATACAAACCTC
110318101 T
1 T
110318102 ATGAACTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (14 bp):
TTCATACAAACCTC
Found at i:110320099 original size:54 final size:54
Alignment explanation
Indices: 110320017--110320126 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
110320007 CAGATCGCAG
110320017 ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACCTCACT
1 ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACCTCACT
*
110320071 ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACTTCACT
1 ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACCTCACT
110320125 AT
1 AT
110320127 CACTTCCACG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.24
Consensus pattern (54 bp):
ATTCAAAACAAAAGAACCTGGAGGACAGATCTATGAAATGTCACTTACCTCACT
Found at i:110322484 original size:14 final size:14
Alignment explanation
Indices: 110322439--110322503 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
110322429 TTTTTTTATC
*
110322439 ATATATTTTATCTAT
1 ATATATTTTAT-TTT
* * *
110322454 AAATTATATTATATT
1 ATA-TATTTTATTTT
110322469 ATATATTTTATTTT
1 ATATATTTTATTTT
*
110322483 ATATA-TTT-CTTT
1 ATATATTTTATTTT
110322495 ATATATTTT
1 ATATATTTT
110322504 TTATAAAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.20
13 6 0.15
14 14 0.35
15 5 0.12
16 7 0.17
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (14 bp):
ATATATTTTATTTT
Found at i:110322495 original size:12 final size:11
Alignment explanation
Indices: 110322479--110322508 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
110322469 ATATATTTTA
110322479 TTTTATATATT
1 TTTTATATATT
110322490 TCTTTATATATT
1 T-TTTATATATT
110322502 TTTTATA
1 TTTTATA
110322509 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:110322526 original size:20 final size:21
Alignment explanation
Indices: 110322498--110322537 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
110322488 TTTCTTTATA
*
110322498 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
110322518 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
110322538 AATGGAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:110322855 original size:18 final size:18
Alignment explanation
Indices: 110322829--110322869 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
110322819 TACCATATTA
*
110322829 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
110322847 TATTACATACTATATTTT
1 TATTACATACTATATTTT
110322865 TATTA
1 TATTA
110322870 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:110322947 original size:24 final size:22
Alignment explanation
Indices: 110322904--110322950 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 22
110322894 CTTTCTCATA
110322904 TATTTTTTTATTATATATTATT
1 TATTTTTTTATTATATATTATT
110322926 TATTTTGTTT-TTATACTAATTATT
1 TATTTT-TTTATTATA-T-ATTATT
110322950 T
1 T
110322951 TACCATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 11 0.50
23 4 0.18
24 7 0.32
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (22 bp):
TATTTTTTTATTATATATTATT
Found at i:110323003 original size:21 final size:22
Alignment explanation
Indices: 110322977--110323037 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
110322967 GCAAAATACT
110322977 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
110322998 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
110323020 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
110323038 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:110328680 original size:32 final size:32
Alignment explanation
Indices: 110328639--110328710 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
110328629 AACTCTGTTA
*
110328639 CAATCTCCATTCATTATGTTATTTTGATTCAC
1 CAATCTCCATTCATTATGCTATTTTGATTCAC
110328671 CAATCTCCATTCATTATGCTATTTTGATTCAC
1 CAATCTCCATTCATTATGCTATTTTGATTCAC
110328703 C-ATCTCCA
1 CAATCTCCA
110328711 GAGGGTTAGC
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 7 0.18
32 32 0.82
ACGTcount: A:0.25, C:0.26, G:0.06, T:0.43
Consensus pattern (32 bp):
CAATCTCCATTCATTATGCTATTTTGATTCAC
Found at i:110333336 original size:33 final size:35
Alignment explanation
Indices: 110333252--110333327 Score: 102
Period size: 39 Copynumber: 2.1 Consensus size: 35
110333242 CCTAGAAAAG
110333252 AAATAAA-AAAAATAGAATTAAAAGTTTTGATCTGGAA
1 AAATAAATAAAAATAGAATTAAAAGTTTTGATC--G-A
110333289 AAATAAAATAAAAATAGAATTAAAAGTTTTGATC-A
1 AAAT-AAATAAAAATAGAATTAAAAGTTTTGATCGA
110333324 AAAT
1 AAAT
110333328 TTTAAAAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
35 5 0.14
37 4 0.11
38 3 0.08
39 25 0.68
ACGTcount: A:0.59, C:0.03, G:0.11, T:0.28
Consensus pattern (35 bp):
AAATAAATAAAAATAGAATTAAAAGTTTTGATCGA
Found at i:110334058 original size:10 final size:10
Alignment explanation
Indices: 110334031--110334080 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
110334021 TTAAATTCTA
110334031 AAAGATAAAT
1 AAAGATAAAT
*
110334041 ATAA-ATAATT
1 A-AAGATAAAT
110334051 AAAGATAAAT
1 AAAGATAAAT
110334061 AAAGATAAAT
1 AAAGATAAAT
*
110334071 AAAAATAAAT
1 AAAGATAAAT
110334081 CCTAAAATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:110334130 original size:14 final size:13
Alignment explanation
Indices: 110334094--110334130 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
110334084 AAAATTGAAT
110334094 CTAAATAATTATC
1 CTAAATAATTATC
*
110334107 CTTAATAATTATC
1 CTAAATAATTATC
110334120 CTAATATAATT
1 CTAA-ATAATT
110334131 GGAATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:110335573 original size:23 final size:23
Alignment explanation
Indices: 110335547--110335590 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
110335537 TATAAGCACA
110335547 AAAAAACTAATTTAACTCAAGTT
1 AAAAAACTAATTTAACTCAAGTT
110335570 AAAAAACTAATTTAACTCAAG
1 AAAAAACTAATTTAACTCAAG
110335591 CTAATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.27
Consensus pattern (23 bp):
AAAAAACTAATTTAACTCAAGTT
Found at i:110335848 original size:18 final size:19
Alignment explanation
Indices: 110335825--110335860 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
110335815 TACAAATATA
110335825 TATAAATT-ATAAAGAAAT
1 TATAAATTGATAAAGAAAT
*
110335843 TATAAATTGTTAAAGAAA
1 TATAAATTGATAAAGAAA
110335861 ATTTTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (19 bp):
TATAAATTGATAAAGAAAT
Found at i:110337433 original size:139 final size:139
Alignment explanation
Indices: 110337244--110337522 Score: 461
Period size: 139 Copynumber: 2.0 Consensus size: 139
110337234 TGTGTTGATG
* *
110337244 CATTTTAATTTTAACCAGCTTTCAACCATGTCTATGAGTATTTACCCATGGGAAATGGGGAAAGC
1 CATTTTAATTTTAACCAGCTTACAACCATGTCTACGAGTATTTACCCATGGGAAATGGGGAAAGC
*
110337309 GTCTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTCGCG
66 ATCTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTCGCG
110337374 CCTTTTCTT
131 CCTTTTCTT
* * * *
110337383 CATTTTAATTTTAATCAG-TGTACAACCATGTCTACGTGTTTTTATCCATGGGAAATGGGGAAAG
1 CATTTTAATTTTAACCAGCT-TACAACCATGTCTACGAGTATTTACCCATGGGAAATGGGGAAAG
* *
110337447 CATCTTGTTTCTGTGCATGCATGTTAGTGATGTGCTAAATGAATGCTACAATTTTCCAAAGTTGC
65 CATCTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTCGC
110337512 GCCTTTTCTT
130 GCCTTTTCTT
110337522 C
1 C
110337523 TTCATTTAGG
Statistics
Matches: 130, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
138 1 0.01
139 129 0.99
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (139 bp):
CATTTTAATTTTAACCAGCTTACAACCATGTCTACGAGTATTTACCCATGGGAAATGGGGAAAGC
ATCTTGTTTCTGTGCATGCATGTTAGCGATGTGCTAAATGAATGCTACAATTTTCCAAAGTCGCG
CCTTTTCTT
Found at i:110339016 original size:11 final size:10
Alignment explanation
Indices: 110338996--110339057 Score: 56
Period size: 10 Copynumber: 6.3 Consensus size: 10
110338986 TATAAAAACT
110338996 AAAAATTCTA
1 AAAAATTCTA
110339006 AAAACATTCTA
1 AAAA-ATTCTA
* *
110339017 AAGAA-TATA
1 AAAAATTCTA
*
110339026 AAAAA-GCTA
1 AAAAATTCTA
*
110339035 AAAAATTTTA
1 AAAAATTCTA
*
110339045 AAAACTTCTA
1 AAAAATTCTA
110339055 AAA
1 AAA
110339058 TAATAATTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
9 14 0.34
10 18 0.44
11 9 0.22
ACGTcount: A:0.61, C:0.10, G:0.03, T:0.26
Consensus pattern (10 bp):
AAAAATTCTA
Found at i:110339054 original size:38 final size:36
Alignment explanation
Indices: 110338984--110339056 Score: 103
Period size: 39 Copynumber: 2.0 Consensus size: 36
110338974 ATTTTTTTAA
110338984 AATATAAAAACTAAAAATTCTAAAAACATTCTAAAG
1 AATATAAAAACTAAAAATTCTAAAAACATTCTAAAG
*
110339020 AATATAAAAAAGCTAAAAAATTTTAAAAAC-TTCTAAA
1 AATAT-AAAAA-CT-AAAAATTCTAAAAACATTCTAAA
110339057 ATAATAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
36 5 0.15
37 5 0.15
38 9 0.27
39 14 0.42
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.26
Consensus pattern (36 bp):
AATATAAAAACTAAAAATTCTAAAAACATTCTAAAG
Found at i:110339250 original size:16 final size:16
Alignment explanation
Indices: 110339209--110339250 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
110339199 AATCAAAACA
110339209 ATTTCACTCG-ATTCC
1 ATTTCACTCGAATTCC
* * *
110339224 ACTTGACTCGAATTTC
1 ATTTCACTCGAATTCC
110339240 ATTTCACTCGA
1 ATTTCACTCGA
110339251 TTCGATCTGA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.38
Consensus pattern (16 bp):
ATTTCACTCGAATTCC
Found at i:110342179 original size:14 final size:14
Alignment explanation
Indices: 110342157--110342211 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
110342147 AACATAATAG
*
110342157 ATTAATAAATATTT
1 ATTATTAAATATTT
110342171 ATTATTAAATATTT
1 ATTATTAAATATTT
*
110342185 ATAAATTGCAATATATTT
1 AT-TATT--AA-ATATTT
110342203 ATTATTAAA
1 ATTATTAAA
110342212 ATAGTAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
14 16 0.47
15 5 0.15
17 5 0.15
18 8 0.24
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTATTAAATATTT
Found at i:110355997 original size:20 final size:21
Alignment explanation
Indices: 110355959--110355997 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
110355949 AATTTTTTTA
**
110355959 AAAAAGATAAATTTTAAATAT
1 AAAAAGATAAATTACAAATAT
110355980 AAAAA-ATAAATTACAAAT
1 AAAAAGATAAATTACAAAT
110355998 TATGTCAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (21 bp):
AAAAAGATAAATTACAAATAT
Found at i:110359119 original size:19 final size:19
Alignment explanation
Indices: 110359095--110359143 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 19
110359085 CAATAATATG
110359095 TCACATATATCTATTAATT
1 TCACATATATCTATTAATT
110359114 TCACATATATCTATTAATT
1 TCACATATATCTATTAATT
*
110359133 TGACATGATAT
1 TCACAT-ATAT
110359144 TCTGTACCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 24 0.86
20 4 0.14
ACGTcount: A:0.37, C:0.14, G:0.04, T:0.45
Consensus pattern (19 bp):
TCACATATATCTATTAATT
Found at i:110370771 original size:21 final size:22
Alignment explanation
Indices: 110370747--110370797 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
110370737 TATTGTGGAG
* *
110370747 TACTAGCGACTT-ATTGCATCT
1 TACTAGCAACTTGATTGCATAT
* *
110370768 TACTGGCAACTTGTTTGCATAT
1 TACTAGCAACTTGATTGCATAT
110370790 TACTAGCA
1 TACTAGCA
110370798 GTTTTAACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (22 bp):
TACTAGCAACTTGATTGCATAT
Found at i:110371373 original size:8 final size:8
Alignment explanation
Indices: 110371334--110371364 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
110371324 ATTTAAGTAA
110371334 ATATTATT
1 ATATTATT
110371342 ATATTATT
1 ATATTATT
110371350 ATATTATT
1 ATATTATT
110371358 ATATTAT
1 ATATTAT
110371365 ATTAGTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
ATATTATT
Found at i:110379088 original size:34 final size:34
Alignment explanation
Indices: 110379048--110379136 Score: 142
Period size: 34 Copynumber: 2.6 Consensus size: 34
110379038 ATGTTAGTTA
110379048 TTAATTGAGTTGCTAGAATAAATGCTTATCTTAG
1 TTAATTGAGTTGCTAGAATAAATGCTTATCTTAG
* * *
110379082 TTAATTGAATAGCGAGAATAAATGCTTATCTTAG
1 TTAATTGAGTTGCTAGAATAAATGCTTATCTTAG
*
110379116 TTAATTTAGTTGCTAGAATAA
1 TTAATTGAGTTGCTAGAATAA
110379137 TTTATTGTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (34 bp):
TTAATTGAGTTGCTAGAATAAATGCTTATCTTAG
Found at i:110385077 original size:40 final size:40
Alignment explanation
Indices: 110384992--110385142 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
110384982 AATTGAATGA
* * * *
110384992 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
110385032 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
110385073 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
110385112 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
110385143 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:110385156 original size:40 final size:40
Alignment explanation
Indices: 110385029--110385158 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
110385019 ATGCTGGAAA
* * *
110385029 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
110385069 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
110385109 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
110385149 TTATATCCGG
1 TTATATCCGG
110385159 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:110385157 original size:80 final size:80
Alignment explanation
Indices: 110384991--110385158 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
110384981 AAATTGAATG
* *
110384991 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
110385056 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
110385071 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
110385134 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
110385151 ATATCCGG
1 ATATCCGG
110385159 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:110393041 original size:40 final size:40
Alignment explanation
Indices: 110392975--110393125 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
110392965 AAATTGAATG
* * *
110392975 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
110393014 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
110393054 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
110393094 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
110393126 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:110393139 original size:40 final size:40
Alignment explanation
Indices: 110393012--110393141 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
110393002 ATGCTGGAAA
* * *
110393012 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
110393052 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
110393092 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
110393132 TTATATCCGG
1 TTATATCCGG
110393142 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:110396228 original size:48 final size:48
Alignment explanation
Indices: 110396170--110396326 Score: 138
Period size: 48 Copynumber: 3.3 Consensus size: 48
110396160 GCTGTCACAG
* * *
110396170 ACATGGTCTTATACGAAACCATATATCGATGCCAATGTCATATCCCAA
1 ACATGGTCTTACACGAAACCACATATCGATGCCAATGCCATATCCCAA
* * * * * *
110396218 ATATGGTCTTACATGAGATCACATATCGATGCCAATGCCATGTCCCAG
1 ACATGGTCTTACACGAAACCACATATCGATGCCAATGCCATATCCCAA
* * ** * * *
110396266 ACATGGTCTTACA-TAGGATTACATATCGGTTG-CAATGCCATGTCCCAG
1 ACATGGTCTTACACGA-AACCACATATC-GATGCCAATGCCATATCCCAA
110396314 ACATGGTCTTACA
1 ACATGGTCTTACA
110396327 TGGGATCACA
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
47 1 0.01
48 90 0.96
49 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (48 bp):
ACATGGTCTTACACGAAACCACATATCGATGCCAATGCCATATCCCAA
Found at i:110396327 original size:48 final size:47
Alignment explanation
Indices: 110396192--110396336 Score: 193
Period size: 48 Copynumber: 3.0 Consensus size: 47
110396182 ACGAAACCAT
* * * *
110396192 ATATCGATGCCAATGTCATATCCCAAATATGGTCTTACATGAGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GATCAC
*
110396240 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATTAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGATCAC
*
110396288 ATATCGGTTG-CAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
1 ATATC-GATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGATCAC
110396336 A
1 A
110396337 CATAACCCTA
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
48 83 0.95
49 4 0.05
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (47 bp):
ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGATCAC
Found at i:110397687 original size:15 final size:15
Alignment explanation
Indices: 110397667--110397696 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
110397657 CAACACTTGT
110397667 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
110397682 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
110397697 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:110412107 original size:43 final size:42
Alignment explanation
Indices: 110412060--110412174 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 42
110412050 TCACATATCG
* * *
110412060 ATGCCATTGTCCTAGACATGGTCTTATACGAAAT-CATATAACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCCA-AT-ACA
* **
110412103 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCGCAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATC-CAATACA
110412146 ATGCCAATGTCCCAGACATGGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
110412175 ACAATCACGT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
43 60 0.94
44 2 0.03
45 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCCAATACA
Found at i:110416201 original size:50 final size:50
Alignment explanation
Indices: 110416147--110416248 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
110416137 TAACACTATG
* * *
110416147 TAAATACTTACCTATACAACCGAATATACAAGGTCCAATATATCATCTCA
1 TAAATACTTACATATACAACCGAATACACAAGGTCCAATATATCATCACA
*** * *
110416197 TAAATACTTACATATATGGCCGAATACACAAGGTTCATTATATCATCACA
1 TAAATACTTACATATACAACCGAATACACAAGGTCCAATATATCATCACA
110416247 TA
1 TA
110416249 TGGCCTAATA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (50 bp):
TAAATACTTACATATACAACCGAATACACAAGGTCCAATATATCATCACA
Found at i:110419442 original size:55 final size:55
Alignment explanation
Indices: 110419324--110419444 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 55
110419314 ATCCCGTATG
* * * *
110419324 CAACACTAACTTTAAAACACGACCATGACACACACCCGTGTGGCCTGCTCCTGTT
1 CAACACTGACTTTAAAACACAACCATGACACACACCCGTGTGGCCTACTCCTGTA
*
110419379 CAACACTGACTTTAAAACACAACCATGACACACGCCCGTGTGGCCTAC-CCTTGTA
1 CAACACTGACTTTAAAACACAACCATGACACACACCCGTGTGGCCTACTCC-TGTA
110419434 CTAA-ACTGACT
1 C-AACACTGACT
110419445 AAAAATTTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
54 2 0.03
55 55 0.93
56 2 0.03
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.21
Consensus pattern (55 bp):
CAACACTGACTTTAAAACACAACCATGACACACACCCGTGTGGCCTACTCCTGTA
Found at i:110420372 original size:44 final size:44
Alignment explanation
Indices: 110420312--110420434 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
110420302 ATATGTGTTG
* * *
110420312 ATGCATGTCCCGGACATGTCTTACACTAGCACAAATCTTA-GCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCACAAATC-GAGGCCA
** *
110420356 ATGCATGTCCCAGACATGTCTTACACTGGCTATCCTTATCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-A--CAAATCGAGGCCA
110420403 ATGCATG-CCCAGACATGTCTTACACTGGCACA
1 ATGCATGTCCCAGACATGTCTTACACTGGCACA
110420435 CAAGAAATTC
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 28 0.41
45 2 0.03
46 23 0.34
47 14 0.21
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCACAAATCGAGGCCA
Found at i:110423419 original size:68 final size:64
Alignment explanation
Indices: 110423309--110423549 Score: 238
Period size: 68 Copynumber: 3.7 Consensus size: 64
110423299 ATACAGATGG
** * * *
110423309 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAG--
110423372 ATTA
62 A-TA
*
110423376 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
110423441 TATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
110423506 TA
63 TA
* * *
110423508 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGT
110423550 GTACATGAGA
Statistics
Matches: 147, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
63 9 0.06
64 25 0.17
65 3 0.02
66 23 0.16
67 34 0.23
68 52 0.35
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:110423494 original size:67 final size:65
Alignment explanation
Indices: 110423354--110423507 Score: 193
Period size: 67 Copynumber: 2.3 Consensus size: 65
110423344 CATCATGTGT
* * *
110423354 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TATGATGTAGCTAGGTCACATGCGTGATACTATGAGGACACCATG
110423419 TAG
63 TAG
* * *
110423422 ACAAGAGAGCTACGAGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGAGATATGATGTAGCTAGGTCACATGCGTGATACTA--TG-AGGACACCATG
110423486 TAG
63 TAG
110423489 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
110423508 AACTGGCTAG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
64 24 0.31
65 3 0.04
66 3 0.04
67 31 0.40
68 16 0.21
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGAGATATGATGTAGCTAGGTCACATGCGTGATACTATGAGGACACCATGTAG
Found at i:110430076 original size:55 final size:55
Alignment explanation
Indices: 110429988--110430107 Score: 161
Period size: 55 Copynumber: 2.2 Consensus size: 55
110429978 CTTACCCTTA
* * *
110429988 GCCCGTGTGCAACACTGACTTTAAAGCAAGGCCATGACACACGCCCGTGTGGTCT
1 GCCCGTGTACAACACTGACTTTAAAGCAAGGCCATGACACACACCCGTGTGGCCT
* **
110430043 GCCCGTGTACAACACTGACTTTATAA-CACGGCCATGACACACACCTTTGTGGCCT
1 GCCCGTGTACAACACTGACTTTA-AAGCAAGGCCATGACACACACCCGTGTGGCCT
*
110430098 ACCCGTGTAC
1 GCCCGTGTAC
110430108 TCAACTGACT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 55 0.96
56 2 0.04
ACGTcount: A:0.24, C:0.33, G:0.22, T:0.22
Consensus pattern (55 bp):
GCCCGTGTACAACACTGACTTTAAAGCAAGGCCATGACACACACCCGTGTGGCCT
Found at i:110431210 original size:47 final size:47
Alignment explanation
Indices: 110431012--110431326 Score: 234
Period size: 47 Copynumber: 6.7 Consensus size: 47
110431002 ATAAATTGCC
* * * *
110431012 GATGCCATGTCCCAGACAAGGTCTCACACAGGCTATTATCATCGAGGCT
1 GATG-CATGTCCCAGAC-ATGTCTTACACTGGCTATCATCATCGAGGCT
* * * * *
110431061 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATATATAC-ATGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCAT-CAT-CGAGGCT
* * * * *
110431111 GATCCATGTCCCGGACATGTCTTACACTAGC-A-CGA-C-TCTTA-GTT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATC-ATCATC-GAGGCT
*
110431155 GATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCT
* * * *
110431202 GATGCATGTCCCAGACATGTCTTACATTGGC-ACTCATC-TCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCATCGAGGCT
* * * * * *
110431248 GATTCCATGTCCCAGACATTGTCTTACACTGGCTCTAATAAT-GTGGCC
1 GA-TGCATGTCCCAGACA-TGTCTTACACTGGCTATCATCATCGAGGCT
*
110431296 GATGCAAGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
110431327 ACACGAGAAA
Statistics
Matches: 214, Mismatches: 36, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
43 1 0.00
44 30 0.14
45 3 0.01
46 26 0.12
47 66 0.31
48 34 0.16
49 44 0.21
50 9 0.04
51 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCT
Found at i:110431300 original size:141 final size:140
Alignment explanation
Indices: 110431009--110431326 Score: 354
Period size: 141 Copynumber: 2.2 Consensus size: 140
110430999 TGGATAAATT
* * * *
110431009 GCCGATGCCATGTCCCAGACAAGGTCTCACACAGGCTATTATCATCGAGGCTGATGCCATGTCCC
1 GCCGATG-CATGTCCCAGAC-ACGTCTTACACTGGCTATCATCATCGAGGCTGATGCCATGTCCC
* * * *
110431074 AGACATGGTCTTATACTAGCTCTCATATATACATGCTGATCCATGTCCCGGACATGTCTTACACT
64 AGACATGGTCTTACACTAGCACTCATATATACA-GCCGATCCATGTCCCAGACATGTCTTACACT
* *
110431139 AGCACGACTCTTA
128 AGCACGAATATTA
**
110431152 GTTGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCTGATG-CATGTCCCAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCTGATGCCATGTCCCAG
* * * * *
110431216 ACAT-GTCTTACATTGGCACTCATCTCTAC-GCCGATTCCATGTCCCAGACATTGTCTTACACTG
66 ACATGGTCTTACACTAGCACTCATATATACAGCCGA-TCCATGTCCCAGACA-TGTCTTACACTA
* * *
110431279 GCTCTAATAATGTG
129 GCACGAAT-AT-TA
* *
110431293 GCCGATGCAAGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGC
110431327 ACACGAGAAA
Statistics
Matches: 147, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
137 4 0.03
138 14 0.10
139 35 0.24
140 15 0.10
141 62 0.42
142 12 0.08
143 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (140 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCTGATGCCATGTCCCAG
ACATGGTCTTACACTAGCACTCATATATACAGCCGATCCATGTCCCAGACATGTCTTACACTAGC
ACGAATATTA
Found at i:110450214 original size:40 final size:40
Alignment explanation
Indices: 110450169--110450335 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
110450159 CGGAATATAA
110450169 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
110450209 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
110450249 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
110450289 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
110450328 CCGGATAT
1 CCGGATAT
110450336 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:110458222 original size:40 final size:40
Alignment explanation
Indices: 110458177--110458343 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
110458167 CGGAATATAA
110458177 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
110458217 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
110458257 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
110458297 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
110458336 CCGGATAT
1 CCGGATAT
110458344 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:110462787 original size:42 final size:42
Alignment explanation
Indices: 110462723--110462806 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
110462713 CGTACAGGGC
*
110462723 TTTTGGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
1 TTTTCGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
110462765 TTTTCGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
1 TTTTCGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
110462807 GCTTCCAAGC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (42 bp):
TTTTCGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
Found at i:110464639 original size:29 final size:28
Alignment explanation
Indices: 110464604--110464682 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
110464594 GGGTATTTTA
110464604 ACGATTTGGCTTTAGGCCATGCATATCGG
1 ACGATTTGGCTTT-GGCCATGCATATCGG
* * *
110464633 ATGATTTGGCTTTGAGCCATACATATTGG
1 ACGATTTGGCTTTG-GCCATGCATATCGG
*
110464662 ACGATTTGGCTTCGGGCCATG
1 ACGATTTGGCTT-TGGCCATG
110464683 ATAATAGTTC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
28 1 0.02
29 40 0.95
30 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (28 bp):
ACGATTTGGCTTTGGCCATGCATATCGG
Found at i:110474723 original size:20 final size:20
Alignment explanation
Indices: 110474698--110474735 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
110474688 AAAGTGAGAA
*
110474698 TTTATTTTCTAAGTATAAAT
1 TTTATTTTCTAAGAATAAAT
*
110474718 TTTATTTTTTAAGAATAA
1 TTTATTTTCTAAGAATAA
110474736 CAAATTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTATTTTCTAAGAATAAAT
Found at i:110478277 original size:16 final size:16
Alignment explanation
Indices: 110478256--110478287 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
110478246 GAAGGAGAAC
110478256 AAAGAAAAGAAGAAGA
1 AAAGAAAAGAAGAAGA
*
110478272 AAAGAAGAGAAGAAGA
1 AAAGAAAAGAAGAAGA
110478288 TGGAGAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
AAAGAAAAGAAGAAGA
Found at i:110478609 original size:30 final size:33
Alignment explanation
Indices: 110478573--110478650 Score: 99
Period size: 35 Copynumber: 2.4 Consensus size: 33
110478563 CATTCATTCA
110478573 TAATTTATTT-TTA-ATGCTTTA-TTTTTTATG
1 TAATTTATTTGTTATATGCTTTATTTTTTTATG
* *
110478603 TAATTTATTTGTTATGTGTGTTTTATTTTTTTATG
1 TAATTTATTTGTTA--TATGCTTTATTTTTTTATG
110478638 TAATTTATTTGTT
1 TAATTTATTTGTT
110478651 GTGTGTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
30 10 0.24
31 3 0.07
34 6 0.15
35 22 0.54
ACGTcount: A:0.21, C:0.01, G:0.10, T:0.68
Consensus pattern (33 bp):
TAATTTATTTGTTATATGCTTTATTTTTTTATG
Found at i:110478654 original size:33 final size:34
Alignment explanation
Indices: 110478590--110478660 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 34
110478580 TTTTTAATGC
110478590 TTTATTTTTTATGTAATTTATTTGTTATGTGTGT
1 TTTATTTTTTATGTAATTTATTTGTTATGTGTGT
110478624 TTTATTTTTTTATGTAATTTATTTG-T-TGTGTGT
1 TTTA-TTTTTTATGTAATTTATTTGTTATGTGTGT
110478657 TTTA
1 TTTA
110478661 GGTTGGTTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
33 11 0.31
34 5 0.14
35 20 0.56
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (34 bp):
TTTATTTTTTATGTAATTTATTTGTTATGTGTGT
Found at i:110480606 original size:43 final size:42
Alignment explanation
Indices: 110480552--110480664 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
110480542 AGCTCATACA
* ** *
110480552 ATGCCATATCCCAGATATGGTCTTACATGTTATC-ACATATCG
1 ATGCCATATCCCAGACATGGTCTTACATGAAATCGA-ATAACG
* * *
110480594 ATGCCACTATCCCAGGCAGGGTCTTACATGAAATCGATTAACG
1 ATGCCA-TATCCCAGACATGGTCTTACATGAAATCGAATAACG
*
110480637 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCC-ATATCCCAGACATGGTCTTACA
110480665 CATAATCTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 6 0.10
43 50 0.86
44 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACATGAAATCGAATAACG
Found at i:110481185 original size:119 final size:120
Alignment explanation
Indices: 110480969--110481210 Score: 459
Period size: 119 Copynumber: 2.0 Consensus size: 120
110480959 CTAAATCTGA
110480969 TTTCTTTCGTTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
1 TTTCTTTCGTTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
*
110481034 CATCCAAAACACACAATTTGGGACATTTTACACATTAACCCCTATAATTTCACAT
66 CATCCAAAACACACAATTTAGGACATTTTACACATTAACCCCTATAATTTCACAT
110481089 TTTC-TTCGTTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
1 TTTCTTTCGTTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
*
110481153 CATCCAAAACACATAATTTAGGACATTTTACACATTAACCCCTATAATTTCACAT
66 CATCCAAAACACACAATTTAGGACATTTTACACATTAACCCCTATAATTTCACAT
110481208 TTT
1 TTT
110481211 TTCAATTTAG
Statistics
Matches: 120, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
119 116 0.97
120 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.42
Consensus pattern (120 bp):
TTTCTTTCGTTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
CATCCAAAACACACAATTTAGGACATTTTACACATTAACCCCTATAATTTCACAT
Found at i:110484321 original size:47 final size:48
Alignment explanation
Indices: 110484267--110484394 Score: 159
Period size: 47 Copynumber: 2.7 Consensus size: 48
110484257 CACAATCGAT
*
110484267 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCT-CG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTACG
* * * * * *
110484314 AAGTACCTACACCATAGTCCATAGCCAAATCAAGGTAACTCCTCTATG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTACG
* * *
110484362 AAATACCTATACCATGGCCCGCAGCCAAGTCAA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAA
110484395 CGTATCATTC
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
47 39 0.59
48 27 0.41
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.21
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTACG
Found at i:110486239 original size:14 final size:14
Alignment explanation
Indices: 110486220--110486247 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
110486210 TTTTTCTAAT
110486220 GATACTATTTTAAC
1 GATACTATTTTAAC
110486234 GATACTATTTTAAC
1 GATACTATTTTAAC
110486248 ATGTAATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
GATACTATTTTAAC
Found at i:110487515 original size:47 final size:48
Alignment explanation
Indices: 110487452--110487543 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 48
110487442 CAACAATACA
*
110487452 ACATTAAAACACT-AAAATTGGAACAAAA-TTTGTAATATAAATTAAAT
1 ACATTAAAACACTAAAAATTAGAA-AAAACTTTGTAATATAAATTAAAT
* *
110487499 ACATTACAACATTAAAAATTAGAAAAAACTTTGTAATATAAATTA
1 ACATTAAAACACTAAAAATTAGAAAAAACTTTGTAATATAAATTA
110487544 GGCACATTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
47 15 0.38
48 25 0.62
ACGTcount: A:0.55, C:0.09, G:0.05, T:0.30
Consensus pattern (48 bp):
ACATTAAAACACTAAAAATTAGAAAAAACTTTGTAATATAAATTAAAT
Found at i:110490389 original size:40 final size:41
Alignment explanation
Indices: 110490271--110490390 Score: 165
Period size: 40 Copynumber: 3.0 Consensus size: 41
110490261 ACTTGATATC
* * *
110490271 TCGCACACTAAGTGCCATACATAGCCGAAGCTATC-TCAAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGTTATCGTCGAA
*
110490311 TCGCACACTAAGTGCCATATATAGCCGAAGTTAT-GTCGAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGTTATCGTCGAA
* *
110490351 TCGCACACTAAGTGCCACAAATAGCCG-ATTTATCGTCGAA
1 TCGCACACTAAGTGCCATAAATAGCCGAAGTTATCGTCGAA
110490391 CATAACTATG
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
39 5 0.07
40 67 0.93
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (41 bp):
TCGCACACTAAGTGCCATAAATAGCCGAAGTTATCGTCGAA
Found at i:110502757 original size:27 final size:27
Alignment explanation
Indices: 110502718--110502776 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
110502708 TGGGAGTGTA
* *
110502718 GGTGCCACCTATGGCATAGGCTTTACT
1 GGTGCCACCTATGGCATAAGCTTCACT
*
110502745 GGTGCCACTTATGGCATAAGCTTCACT
1 GGTGCCACCTATGGCATAAGCTTCACT
110502772 GGTGC
1 GGTGC
110502777 TGCCTCACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.19, C:0.25, G:0.27, T:0.29
Consensus pattern (27 bp):
GGTGCCACCTATGGCATAAGCTTCACT
Found at i:110507717 original size:18 final size:18
Alignment explanation
Indices: 110507689--110507748 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
110507679 AAAATTTAAG
110507689 AAAATATAAATTAAAATTT
1 AAAA-ATAAATTAAAATTT
*
110507708 AAAAATAAA-TAAAAGTTC
1 AAAAATAAATTAAAA-TTT
110507726 AAAAA-AAATTAAAATTT
1 AAAAATAAATTAAAATTT
110507743 ATAAAA
1 A-AAAA
110507749 ATATAGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
17 11 0.31
18 21 0.58
19 4 0.11
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (18 bp):
AAAAATAAATTAAAATTT
Found at i:110507719 original size:22 final size:22
Alignment explanation
Indices: 110507678--110507720 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
110507668 ATCATTATTC
*
110507678 TAAAATTTAAGAAAATATAAAT
1 TAAAATTTAAGAAAAAATAAAT
110507700 TAAAATTTAA-AAATAAATAAA
1 TAAAATTTAAGAAA-AAATAAA
110507721 AGTTCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (22 bp):
TAAAATTTAAGAAAAAATAAAT
Found at i:110507749 original size:18 final size:17
Alignment explanation
Indices: 110507696--110507749 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
110507686 AAGAAAATAT
110507696 AAATTAAAATTTAAAAA
1 AAATTAAAATTTAAAAA
*
110507713 TAAA-TAAAAGTTCAAAAA
1 -AAATTAAAA-TTTAAAAA
*
110507731 AAATTAAAATTTATAAA
1 AAATTAAAATTTAAAAA
110507748 AA
1 AA
110507750 TATAGAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 16 0.52
18 15 0.48
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (17 bp):
AAATTAAAATTTAAAAA
Found at i:110508491 original size:20 final size:20
Alignment explanation
Indices: 110508477--110508515 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
110508467 TTTTTTTAGT
110508477 ATTTTATATATTTTTTAAAA
1 ATTTTATATATTTTTTAAAA
*
110508497 ATTTTATGTATTTTTTAAA
1 ATTTTATATATTTTTTAAA
110508516 TTTATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
ATTTTATATATTTTTTAAAA
Found at i:110509308 original size:132 final size:132
Alignment explanation
Indices: 110508876--110509507 Score: 973
Period size: 132 Copynumber: 4.8 Consensus size: 132
110508866 GACATTTTTC
* * * * *
110508876 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGTTTTTGTGAAGTCATAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
* * *
110508941 GACGACATTTTTGTGACGACA-TTTCCTAAGTGTTGGGATAGAGTATGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
110509005 TA
131 TA
* * * *
110509007 TAAGGGTTAGGATATGTATGCGTAAGGCAACGCTTGAATAAGAGTTGTCTTCTGTGTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
* * * *
110509072 GAAGACACTTTTGTGGTGACACTTCCCTAAGTGTTGGGATAG-CTATGCTTTGGCCAACTTTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
110509136 TA
131 TA
*
110509138 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTTGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
* *
110509203 GACGATACTTTT-TGGGCGACACTTTCCTAAGTGTTGGTATAGACTATGCTTTGGCCAACTCTTT
66 GACGACACTTTTGT-GGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTT
110509267 GTA
130 GTA
* * * *
110509270 TAAGGGTTGGGATATGTATACCTAAGGCAACGCATGAATAAGAGTTGCCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
* *
110509335 GACGACACTTTTGTGGCGACACTTTTCTAAGTGTTGGGATAGACTACGCTTTGGCCAACTCTTTG
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
110509400 TA
131 TA
* *
110509402 TAAGGGTTGGGATATGTATGCCTAAGACAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
* *
110509467 GACGACAGTTTTGAGGCGACACTTTCCTAAGTGTTGGGATA
66 GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATA
110509508 CACTTGTCAG
Statistics
Matches: 454, Mismatches: 43, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
130 1 0.00
131 190 0.42
132 262 0.58
133 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (132 bp):
TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
GACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
TA
Found at i:110509344 original size:263 final size:264
Alignment explanation
Indices: 110508876--110509507 Score: 991
Period size: 263 Copynumber: 2.4 Consensus size: 264
110508866 GACATTTTTC
* * * * *
110508876 TAAGGGTTGGTATATGTATGCCTAAAGCAACGCTTGAATAAGAGTTGGTTTTTGTGAAGTCATAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
* * *
110508941 GACGACATTTTTGTGACGACA-TTTCCTAAGTGTTGGGATAGAGTATGCTTTGGCCAACTCTTTG
66 GACGACATTTTTGAGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
* * * * *
110509005 TATAAGGGTTAGGATATGTATGCGTAAGGCAACGCTTGAATAAGAGTTGTCTTCTGTGTAGTCCT
131 TATAAGGGTTAGGATATGTATACCTAAGGCAACGCATGAATAAGAGTTGCCTTCTGTCTAGTCCT
* * *
110509070 AAGAAGACACTTTTGTGGTGACACTTCCCTAAGTGTTGGGATAG-CTATGCTTTGGCCAACTTTT
196 AAGAAGACACTTTTGTGGCGACACTTCCCTAAGTGTTGGGATAGACTACGCTTTGGCCAACTCTT
110509134 TGTA
261 TGTA
*
110509138 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTTGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
* *
110509203 GACGATACTTTTTG-GGCGACACTTTCCTAAGTGTTGGTATAGACTATGCTTTGGCCAACTCTTT
66 GACGACA-TTTTTGAGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTT
* *
110509267 GTATAAGGGTTGGGATATGTATACCTAAGGCAACGCATGAATAAGAGTTGCCTTTTGTCTAGTCC
130 GTATAAGGGTTAGGATATGTATACCTAAGGCAACGCATGAATAAGAGTTGCCTTCTGTCTAGTCC
* **
110509332 TAAGACGACACTTTTGTGGCGACACTTTTCTAAGTGTTGGGATAGACTACGCTTTGGCCAACTCT
195 TAAGAAGACACTTTTGTGGCGACACTTCCCTAAGTGTTGGGATAGACTACGCTTTGGCCAACTCT
110509397 TTGTA
260 TTGTA
* *
110509402 TAAGGGTTGGGATATGTATGCCTAAGACAACGCTTGAATAAGAGTTGGCTTTTGTCTAGTCCTAA
1 TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
*
110509467 GACGACAGTTTTGAGGCGACACTTTCCTAAGTGTTGGGATA
66 GACGACATTTTTGAGGCGACACTTTCCTAAGTGTTGGGATA
110509508 CACTTGTCAG
Statistics
Matches: 337, Mismatches: 29, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
262 71 0.21
263 150 0.45
264 116 0.34
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (264 bp):
TAAGGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGTCCTAA
GACGACATTTTTGAGGCGACACTTTCCTAAGTGTTGGGATAGACTATGCTTTGGCCAACTCTTTG
TATAAGGGTTAGGATATGTATACCTAAGGCAACGCATGAATAAGAGTTGCCTTCTGTCTAGTCCT
AAGAAGACACTTTTGTGGCGACACTTCCCTAAGTGTTGGGATAGACTACGCTTTGGCCAACTCTT
TGTA
Found at i:110509870 original size:15 final size:16
Alignment explanation
Indices: 110509839--110509871 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
110509829 AGGTTTGGGG
*
110509839 TTTATGATTTTAGGAT
1 TTTATGATTTAAGGAT
110509855 TTTATGA-TTAAGGAT
1 TTTATGATTTAAGGAT
110509870 TT
1 TT
110509872 GGGGTTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (16 bp):
TTTATGATTTAAGGAT
Found at i:110510579 original size:47 final size:47
Alignment explanation
Indices: 110510509--110510615 Score: 205
Period size: 47 Copynumber: 2.3 Consensus size: 47
110510499 GAATGTATGG
*
110510509 ATACTTTACCCGGATAAAGTATGTATTAGCAGATTCACTAATAATGC
1 ATACTTTACCCGGATAAAATATGTATTAGCAGATTCACTAATAATGC
110510556 ATACTTTACCCGGATAAAATATGTATTAGCAGATTCACTAATAATGC
1 ATACTTTACCCGGATAAAATATGTATTAGCAGATTCACTAATAATGC
110510603 ATACTTTACCCGG
1 ATACTTTACCCGG
110510616 GTAAGGTATG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 59 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.32
Consensus pattern (47 bp):
ATACTTTACCCGGATAAAATATGTATTAGCAGATTCACTAATAATGC
Found at i:110513424 original size:13 final size:12
Alignment explanation
Indices: 110513391--110513425 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
110513381 ATATACAATC
110513391 TTTATTTTAATT
1 TTTATTTTAATT
*
110513403 TTAATTTTAATT
1 TTTATTTTAATT
110513415 TTGTATTTTAA
1 TT-TATTTTAA
110513426 ATTATAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (12 bp):
TTTATTTTAATT
Found at i:110513636 original size:74 final size:73
Alignment explanation
Indices: 110513545--110513868 Score: 316
Period size: 73 Copynumber: 4.4 Consensus size: 73
110513535 TATTATACGT
* * ** * *
110513545 GTCTATCCCAATCTTTTTTTATAGGTTGTTTTAAATAAT-ATCTATCCCAACCTTTTTAAGGTTG
1 GTCTATCCCAA-CCTTTTTTAAAGGTTGCCTTAGA-AATGGTCTATCCCAACCTTTTTAAGGTTG
* *
110513609 CTTTAAACAG
64 CCTTAGACAG
* * * * * * *
110513619 GTCAATCCCAACCTTTTTTAAAAGATACCTCAGACATGGTCTATCCCAACCTTTTTAAGGTTTCC
1 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAAATGGTCTATCCCAACCTTTTTAAGGTTGCC
110513684 TTAGAC-G
66 TTAGACAG
* * * * *
110513691 AGTCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACATGGTCTATCCTAACC--ATTAAGGTTGC
1 -GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAAATGGTCTATCCCAACCTTTTTAAGGTTGC
110513754 CTTAGACAG
65 CTTAGACAG
** *
110513763 GTCTATCCCAACCTTTTTTAATAGGTTGTTTTAGACAAT-GTCGATCCCAACCTTTTTAAGGTTG
1 GTCTATCCCAACCTTTTTTAA-AGGTTGCCTTAGA-AATGGTCTATCCCAACCTTTTTAAGGTTG
* *
110513827 CTTTAGACTG
64 CCTTAGACAG
* * *
110513837 CTCTATCCCAACCGTTTTTAAAAGTTGCCTTA
1 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTA
110513869 AACAAGAACT
Statistics
Matches: 203, Mismatches: 40, Indels: 15
0.79 0.16 0.06
Matches are distributed among these distances:
71 35 0.17
72 26 0.13
73 96 0.47
74 46 0.23
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (73 bp):
GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAAATGGTCTATCCCAACCTTTTTAAGGTTGCC
TTAGACAG
Found at i:110513667 original size:73 final size:73
Alignment explanation
Indices: 110513585--110513964 Score: 339
Period size: 73 Copynumber: 5.3 Consensus size: 73
110513575 TTAAATAATA
* * * * * *
110513585 TCTATCCCAACCTTTTTAAGGTTGCTTTAAACAGGTCAATCCCAACCTTTTTTAAAAGATACCTC
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAAGTTGCCTT
110513650 AGACATGG
66 AGACATGG
* * * *
110513658 TCTATCCCAACCTTTTTAAGGTTTCCTTAGAC-GAGTCTATTCCGACCTTTTTTAAAGGTTGCCT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAG-GTCTATCCCAACCTTTTTTAAAAGTTGCCT
110513722 TAGACATGG
65 TAGACATGG
* * * **
110513731 TCTATCCTAACC--ATTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAATAGGTTGTTT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAA-AAGTTGCCT
110513794 TAGACAAT-G
65 TAGAC-ATGG
* * * * *
110513803 TCGATCCCAACCTTTTTAAGGTTGCTTTAGACTGCTCTATCCCAACCGTTTTTAAAAGTTGCCTT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAAGTTGCCTT
* * *
110513868 AAACAAGA
66 AGACATGG
* ** * * * * * * *
110513876 ACTATATCGACCTTTTTAACGTTGTCTTAGACAGG--TA--ACAACCTTTTTCAAAGGTTGGTCT
1 TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAAGTT-GCCT
110513937 TA-AC-TAGG
65 TAGACAT-GG
110513945 TCTATCCCAACCCTTTTTAA
1 TCTATCCCAA-CCTTTTTAA
110513965 AGGTCGGCAA
Statistics
Matches: 246, Mismatches: 51, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
69 24 0.10
70 14 0.06
71 37 0.15
72 26 0.11
73 109 0.44
74 36 0.15
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (73 bp):
TCTATCCCAACCTTTTTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAAGTTGCCTT
AGACATGG
Found at i:110513671 original size:38 final size:37
Alignment explanation
Indices: 110513585--110513968 Score: 273
Period size: 38 Copynumber: 10.6 Consensus size: 37
110513575 TTAAATAATA
* *
110513585 TCTATCCCAACC-TTTTT-AAGGTTGCTTTAAACAGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAGG
* * * * *
110513620 TCAATCCCAACCTTTTTTAAAAGATACCTCAGACATGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA-GG
*
110513658 TCTATCCCAACC-TTTTT-AAGGTTTCCTTAGAC-GAG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAG-G
* *
110513693 TCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACATGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA-GG
* *
110513731 TCTATCCTAACC---ATT-AAGGTTGCCTTAGACAGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAGG
** *
110513764 TCTATCCCAACCTTTTTTAATAGGTTGTTTTAGACAATG
1 TCTATCCCAACCTTTTTTAA-AGGTTGCCTTAGAC-AGG
* * * *
110513803 TCGATCCCAACC-TTTTT-AAGGTTGCTTTAGACTGC
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAGG
* * * *
110513838 TCTATCCCAACCGTTTTTAAAAGTTGCCTTAAACAAGA
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAC-AGG
* ** * * *
110513876 ACTATATCGACC-TTTTT-AACGTTGTCTTAGACAGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAGG
* * *
110513911 --TA--ACAACCTTTTTCAAAGGTTGGTCTTA-ACTAGG
1 TCTATCCCAACCTTTTTTAAAGGTT-GCCTTAGAC-AGG
*
110513945 TCTATCCCAACCCTTTTTAAAGGT
1 TCTATCCCAACCTTTTTTAAAGGT
110513969 CGGCAATGAC
Statistics
Matches: 274, Mismatches: 50, Indels: 47
0.74 0.13 0.13
Matches are distributed among these distances:
31 4 0.01
32 4 0.01
33 22 0.08
34 26 0.09
35 37 0.14
36 55 0.20
37 48 0.18
38 64 0.23
39 14 0.05
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (37 bp):
TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAGG
Found at i:110513754 original size:34 final size:33
Alignment explanation
Indices: 110513650--110513775 Score: 110
Period size: 34 Copynumber: 3.6 Consensus size: 33
110513640 AAGATACCTC
* *
110513650 AGACATGGTCTATCCCAACCTTTTTAAGGTTTCCTT
1 AGACA-GGTCTATCCCAACC--ATTAAGGTTGCCTT
* * *
110513686 AGAC-GAGTCTATTCCGACCTTTTTTAAAGGTTGCCTT
1 AGACAG-GTCTATCCCAACC---ATT-AAGGTTGCCTT
*
110513723 AGACATGGTCTATCCTAACCATTAAGGTTGCCTT
1 AGACA-GGTCTATCCCAACCATTAAGGTTGCCTT
110513757 AGACAGGTCTATCCCAACC
1 AGACAGGTCTATCCCAACC
110513776 TTTTTTAATA
Statistics
Matches: 77, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
33 13 0.17
34 17 0.22
35 13 0.17
36 9 0.12
37 14 0.18
38 10 0.13
39 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (33 bp):
AGACAGGTCTATCCCAACCATTAAGGTTGCCTT
Found at i:110513824 original size:145 final size:144
Alignment explanation
Indices: 110513600--110513868 Score: 344
Period size: 145 Copynumber: 1.9 Consensus size: 144
110513590 CCCAACCTTT
* *
110513600 TTAAGGTTGCTTTAAACAGGTCAATCCCAACCTTTTTTAAAAGATACCTCAGACATGGTCTATCC
1 TTAAGGTTGCCTTAAACAGGTCAATCCCAACCTTTTTTAAAAGATACCTCAGACATGGTCGATCC
* * * * * *
110513665 CAACCTTTTTAAGGTTTCCTTAGAC-GAGTCTATTCCGACCTTTTTTAAAGGTTGCCTTAGACAT
66 CAACCTTTTTAAGGTTGCCTTAGACTG-CTCTATCCCAACCGTTTTTAAAAGTTGCCTTAGACAT
110513729 GGTCTATCCTAACCA
130 GGTCTATCCTAACCA
* * * * *** *
110513744 TTAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAATAGGTTGTTTTAGACAAT-GTCGAT
1 TTAAGGTTGCCTTAAACAGGTCAATCCCAACCTTTTTTAA-AAGATACCTCAGAC-ATGGTCGAT
*
110513808 CCCAACCTTTTTAAGGTTGCTTTAGACTGCTCTATCCCAACCGTTTTTAAAAGTTGCCTTA
64 CCCAACCTTTTTAAGGTTGCCTTAGACTGCTCTATCCCAACCGTTTTTAAAAGTTGCCTTA
110513869 AACAAGAACT
Statistics
Matches: 105, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
144 37 0.35
145 65 0.62
146 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (144 bp):
TTAAGGTTGCCTTAAACAGGTCAATCCCAACCTTTTTTAAAAGATACCTCAGACATGGTCGATCC
CAACCTTTTTAAGGTTGCCTTAGACTGCTCTATCCCAACCGTTTTTAAAAGTTGCCTTAGACATG
GTCTATCCTAACCA
Found at i:110518246 original size:6 final size:6
Alignment explanation
Indices: 110518235--110518265 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
110518225 CAAATCTAAA
*
110518235 AGGCAT AGGCAT AGGCAT AGGCAT ATGCAT A
1 AGGCAT AGGCAT AGGCAT AGGCAT AGGCAT A
110518266 CATGTATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (6 bp):
AGGCAT
Found at i:110528024 original size:40 final size:39
Alignment explanation
Indices: 110527948--110528129 Score: 145
Period size: 40 Copynumber: 4.6 Consensus size: 39
110527938 TACACATTCA
* * *
110527948 AATGCCTTCGGGACATAGCCCGGTTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCACG
* * *
110527988 AATGCCTTCGGGACTTAACCCGAATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTTAGCCCG-ATTTAGTAACTCGCACG
* *
110528028 AAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTAG-CCCGATTTAGTAACTCGCACG
* * * * *
110528068 TATGCCGTC-GGATCTTAGTCCGGATTTAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCACG
* *
110528108 AAAGTCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
110528130 GATATCATTC
Statistics
Matches: 116, Mismatches: 21, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
39 6 0.05
40 97 0.84
41 13 0.11
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCACG
Found at i:110529264 original size:18 final size:18
Alignment explanation
Indices: 110529241--110529277 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
110529231 GCATAACCTC
110529241 AAACATACCTTAATCTTG
1 AAACATACCTTAATCTTG
110529259 AAACATACCTTAATCTTG
1 AAACATACCTTAATCTTG
110529277 A
1 A
110529278 TGCAAGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (18 bp):
AAACATACCTTAATCTTG
Found at i:110535381 original size:40 final size:40
Alignment explanation
Indices: 110535296--110535446 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
110535286 AATTGAATGA
* * * **
110535296 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
110535336 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
110535377 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
110535416 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
110535447 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:110535460 original size:40 final size:40
Alignment explanation
Indices: 110535333--110535462 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
110535323 ATGCTGGAAA
* * *
110535333 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
110535373 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
110535413 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
110535453 TTATATCCGG
1 TTATATCCGG
110535463 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:110543338 original size:124 final size:122
Alignment explanation
Indices: 110543118--110543339 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
110543108 GAATTATGTG
* * * *
110543118 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
110543183 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
110543240 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
110543304 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
110543340 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:110543383 original size:40 final size:40
Alignment explanation
Indices: 110543298--110543448 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
110543288 AATTGAATGA
* * * *
110543298 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
110543338 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
110543379 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
110543418 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
110543449 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:110543432 original size:80 final size:80
Alignment explanation
Indices: 110543299--110543448 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
110543289 ATTGAATGAT
* *
110543299 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
110543364 TGTGCTAGTGGCTAC
66 TGTGCTAGTGGCTAC
* * * *
110543379 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
110543442 TTTGTGC
64 ATTGTGC
110543449 ACGTGGTTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 4 0.07
80 57 0.93
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCTAC
Found at i:110545257 original size:53 final size:53
Alignment explanation
Indices: 110545101--110545266 Score: 203
Period size: 53 Copynumber: 3.1 Consensus size: 53
110545091 GACGAAAAAT
* * **
110545101 ATGTGATAA-GTGCAC-CCGTTTAAGACCATAGCTGGGTTATGGCATCGGTGCA
1 ATGTGATAATGTG-ACTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATA
* *
110545153 ATTTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATA
* *
110545206 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGATATGGCATCGGTAT-A
110545260 TATGTGA
1 -ATGTGA
110545267 ACCGTGTAAG
Statistics
Matches: 100, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
52 11 0.11
53 82 0.82
54 1 0.01
55 6 0.06
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGATATGGCATCGGTATA
Found at i:110549462 original size:46 final size:46
Alignment explanation
Indices: 110549409--110549582 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 46
110549399 GTTGTTGTTG
110549409 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
110549455 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGA-GACGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATGA-GA
* * *
110549501 GAACTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACTTA-A
1 G--CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTA-TGAGA
* *
110549549 ACCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
110549583 TACGAGATGA
Statistics
Matches: 111, Mismatches: 5, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
45 7 0.06
46 53 0.48
47 30 0.27
48 18 0.16
49 1 0.01
50 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:110549589 original size:46 final size:46
Alignment explanation
Indices: 110549412--110549677 Score: 236
Period size: 47 Copynumber: 5.7 Consensus size: 46
110549402 GTTGTTGGCT
* * *
110549412 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGAGAGCC
* * * * *
110549458 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-ATTGAGACGAGAACT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGAGAGCC
* *
110549506 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACTTA-AACC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGA-TGAGAGCC
* *
110549552 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGAGCC
* * * * **
110549598 AGTGTAAGGCCCTGTCTGGGACATGACATCGACT-TGAGATCTGAGCC
1 AGTGTAA-GACATGTCTGGGACATG-CATCGGCTACGAGATGAGAGCC
*
110549645 AGTGTAAGACAATGTTTGGGACATGGCATCGGC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
110549678 ACCTTACCTA
Statistics
Matches: 182, Mismatches: 25, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
45 4 0.02
46 68 0.37
47 78 0.43
48 31 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGAGCC
Found at i:110549665 original size:140 final size:140
Alignment explanation
Indices: 110549412--110549677 Score: 371
Period size: 140 Copynumber: 1.9 Consensus size: 140
110549402 GTTGTTGGCT
*
110549412 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCTGG
* *
110549477 GACATGGCATCGACATTGAGACGAGAACTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
66 GACATGACATCGACATTGAGACGAG-ACCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
110549541 AGACTTAAACC
130 AGACTTAAACC
* * * *
110549552 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAG-TCAGTGTAAGGCCCTGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCT-AGTGTAAGACCATGTCT
*
110549615 GGGACATGACATCGAC-TTGAGATCTGAG-CCAGTGTAAGACAATGTTTGGGACATGGCATCGGC
64 GGGACATGACATCGACATTGAGA-C-GAGACCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGC
110549678 ACCTTACCTA
Statistics
Matches: 112, Mismatches: 8, Indels: 11
0.85 0.06 0.08
Matches are distributed among these distances:
139 18 0.16
140 82 0.73
141 12 0.11
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCTGG
GACATGACATCGACATTGAGACGAGACCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGA
GACTTAAACC
Found at i:110549834 original size:2 final size:2
Alignment explanation
Indices: 110549827--110549854 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
110549817 ATAAGCTCAG
110549827 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
110549855 ATAGGTGACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:110550847 original size:20 final size:21
Alignment explanation
Indices: 110550809--110550847 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
110550799 TCGAGTTGGT
110550809 CACACAGGCGTGTTGCCCTTC
1 CACACAGGCGTGTTGCCCTTC
*
110550830 CACACGGGCGTG-TGCCCT
1 CACACAGGCGTGTTGCCCT
110550848 GTTTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.38, G:0.28, T:0.21
Consensus pattern (21 bp):
CACACAGGCGTGTTGCCCTTC
Found at i:110557017 original size:20 final size:20
Alignment explanation
Indices: 110556988--110557036 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
110556978 TTGTGGAATT
*
110556988 GAGATGGTATGATGATAATA
1 GAGATAGTATGATGATAATA
110557008 GAGATAGTATGATGATAATA
1 GAGATAGTATGATGATAATA
110557028 GAGATAGTA
1 GAGATAGTA
110557037 GAGTTCCTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (20 bp):
GAGATAGTATGATGATAATA
Found at i:110557157 original size:46 final size:46
Alignment explanation
Indices: 110557104--110557270 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
110557094 GTTGTTGGTT
*
110557104 AGTGTAAGACATGTCTGAGACATGCATCGGCCACATTA-TCAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTACTCAGAGCC
** *
110557150 AGTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-ACTC-AGAGCC
* * *
110557198 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GACTTAG-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTACTCAGAGCC
*
110557244 AGTGTAAGACATGTCTGGAACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
110557271 AAGCTATGAG
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
45 4 0.04
46 44 0.44
47 29 0.29
48 22 0.22
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTACTCAGAGCC
Found at i:110557173 original size:47 final size:46
Alignment explanation
Indices: 110557104--110557369 Score: 179
Period size: 47 Copynumber: 5.7 Consensus size: 46
110557094 GTTGTTGGTT
*
110557104 AGTGTAAGACATGTCTGAGACAT-GCATCGGCCACATTATCAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACA-TATCAGAGCC
* * *
110557150 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CA-TTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACAT-A-TC-AGAGCC
* * * *
110557198 AGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCGAGACTTAG-GCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCAC-ATA-TCAGAGCC
* ** * * * * * *
110557244 AGTGTAAGACATGTCTGGAACAT-GCATAAGCTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCA-CATATCAGAGCC
* * *
110557290 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT--GAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC--CACATATCAGAGCC
*
110557337 AGTGTAAGACAAGGTCTGGGACATGGCATCGGC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGGC
110557370 GCCTTACACG
Statistics
Matches: 173, Mismatches: 32, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
45 3 0.02
46 61 0.35
47 77 0.45
48 27 0.16
49 4 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCACATATCAGAGCC
Found at i:110557319 original size:94 final size:94
Alignment explanation
Indices: 110557103--110557365 Score: 254
Period size: 94 Copynumber: 2.8 Consensus size: 94
110557093 TGTTGTTGGT
* *
110557103 TAGTGTAAGACATGTCTGAGACATGCATCGGCCACATTATCAGAGCCAGTGTAAGACCATGTCTG
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATCAGAGCCAGTGTAAGACCATGTCTG
* **
110557168 GGACATGGCATCGGCATTGAGACGAGAGC
66 GAACATGGCATAAGCATTGAGACGAGAGC
* * *
110557197 TAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GACTTAG-GCCAGTGTAAGA-CATGTC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGA-TCAGAGCCAGTGTAAGACCATGTC
* *
110557259 TGGAACAT-GCATAAGC-TATGAGATGATAG-
64 TGGAACATGGCATAAGCAT-TGAGACGAGAGC
* *** * *
110557288 TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA-GAT-ATGAGCCAGTGTAAGACAAGG
1 T-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATGATCA-GAGCCAGTGTAAGACCATG
*
110557351 TCTGGGACATGGCAT
62 TCTGGAACATGGCAT
110557366 CGGCGCCTTA
Statistics
Matches: 142, Mismatches: 17, Indels: 19
0.80 0.10 0.11
Matches are distributed among these distances:
91 3 0.02
92 26 0.18
93 41 0.29
94 64 0.45
95 8 0.06
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATCAGAGCCAGTGTAAGACCATGTCTG
GAACATGGCATAAGCATTGAGACGAGAGC
Found at i:110561938 original size:34 final size:34
Alignment explanation
Indices: 110561895--110561983 Score: 160
Period size: 34 Copynumber: 2.6 Consensus size: 34
110561885 ATCTTAGTTA
110561895 TTAATTGAGTTGCTAGAATAAATGCTTATCTTAG
1 TTAATTGAGTTGCTAGAATAAATGCTTATCTTAG
*
110561929 TTAATTGAGTTGTTAGAATAAATGCTTATCTTAG
1 TTAATTGAGTTGCTAGAATAAATGCTTATCTTAG
*
110561963 TTAATTTAGTTGCTAGAATAA
1 TTAATTGAGTTGCTAGAATAA
110561984 TTTATTGTTA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.43
Consensus pattern (34 bp):
TTAATTGAGTTGCTAGAATAAATGCTTATCTTAG
Found at i:110562007 original size:9 final size:9
Alignment explanation
Indices: 110561995--110562041 Score: 58
Period size: 9 Copynumber: 4.9 Consensus size: 9
110561985 TTATTGTTAC
110561995 ATGTGTTTA
1 ATGTGTTTA
110562004 ATGTTTGTTTA
1 ATG--TGTTTA
110562015 ATGTGTTTA
1 ATGTGTTTA
110562024 ATGTGTTTTA
1 ATGTG-TTTA
*
110562034 TTGTGTTT
1 ATGTGTTT
110562042 GTTAAATGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
9 17 0.50
10 8 0.24
11 9 0.26
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:110562018 original size:20 final size:19
Alignment explanation
Indices: 110561995--110562041 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
110561985 TTATTGTTAC
*
110561995 ATGTGTTTAATGTTTGTTTA
1 ATGTGTTTAATGTGT-TTTA
110562015 ATGTGTTTAATGTGTTTTA
1 ATGTGTTTAATGTGTTTTA
*
110562034 TTGTGTTT
1 ATGTGTTT
110562042 GTTAAATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (19 bp):
ATGTGTTTAATGTGTTTTA
Found at i:110578802 original size:46 final size:46
Alignment explanation
Indices: 110578730--110578823 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
110578720 GTAATGTTTG
* *
110578730 CTCATTGAGCCACTCACGGGTGTGTACACAAAGTCAGTACCCGGAC
1 CTCATTGAGCCACTCACGAGTCTGTACACAAAGTCAGTACCCGGAC
*
110578776 CTCATTGAGCCACTCACTAGTCTGTACACAAAGTCAGTACCCGGAC
1 CTCATTGAGCCACTCACGAGTCTGTACACAAAGTCAGTACCCGGAC
110578822 CT
1 CT
110578824 ACGTTACCTA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.21
Consensus pattern (46 bp):
CTCATTGAGCCACTCACGAGTCTGTACACAAAGTCAGTACCCGGAC
Found at i:110604669 original size:20 final size:21
Alignment explanation
Indices: 110604630--110604670 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
110604620 TTGAAATAGT
**
110604630 ATGTTTAAGTGCGTTTGAATG
1 ATGTTTAAGTGCCCTTGAATG
110604651 ATGTTTAAGT-CCCTTGAATG
1 ATGTTTAAGTGCCCTTGAATG
110604671 TGTGCACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (21 bp):
ATGTTTAAGTGCCCTTGAATG
Found at i:110605208 original size:15 final size:15
Alignment explanation
Indices: 110605188--110605217 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
110605178 TAAGATTAAC
110605188 TTATTTAATTTTATG
1 TTATTTAATTTTATG
110605203 TTATTTAATTTTATG
1 TTATTTAATTTTATG
110605218 ATGTTAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TTATTTAATTTTATG
Found at i:110611626 original size:68 final size:67
Alignment explanation
Indices: 110611554--110611760 Score: 213
Period size: 68 Copynumber: 3.0 Consensus size: 67
110611544 ATTTTGGCGA
* ** *
110611554 ACTCTATTGGTTGTCTTAGCCAAAATATGGTCTTACACCTTGTAACCTTATGTTTAATGTCTTGG
1 ACTCTATTGGTT-TCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGG
110611619 CAG
65 CAG
* * * *
110611622 ACTCTATTGGTTATAATAGCCAAGCTATGGTATTACATCTTGTAACCTCATATTTAATGTCCTAA
1 ACTCTATTGGTT-TCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAATGT-CT--
110611687 T-G-A-
62 TGGCAG
* * * * * *
110611690 ACTCCATTAGTTTCCATAGCCGAGCTTTGGTCTTACACCTTGTAACCCCATGTTTAATGTCTTGA
1 ACTCTATTGGTTT-CATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGG
110611755 CAG
65 CAG
110611758 ACT
1 ACT
110611761 TTATATGTCG
Statistics
Matches: 113, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
65 1 0.01
67 4 0.04
68 103 0.91
69 3 0.03
70 1 0.01
71 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (67 bp):
ACTCTATTGGTTTCATAGCCAAGCTATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGGC
AG
Found at i:110611775 original size:68 final size:68
Alignment explanation
Indices: 110611579--110611795 Score: 215
Period size: 68 Copynumber: 3.2 Consensus size: 68
110611569 TTAGCCAAAA
* * * ** *
110611579 TATGGTCTTACACCTTGTAACCTTATGTTTAATGTCTTGGCAGACTCTATTGGTTATAATAGCCA
1 TATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGACAGACTCTATTAGTTACCATAGCCG
110611644 AGC
66 AGC
* * * * * *
110611647 TATGGTATTACATCTTGTAACCTCATATTTAATGTCCT-A-ATGAACTCCATTAGTTTCCATAGC
1 TATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGACA-G-ACTCTATTAGTTACCATAGC
110611710 CGAGC
64 CGAGC
* * * ** *
110611715 TTTGGTCTTACACCTTGTAACCCCATGTTTAATGTCTTGACAGACTTTA-TATGTCGCCATAGTC
1 TATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGACAGACTCTATTA-GTTACCATAGCC
110611779 GAGC
65 GAGC
*
110611783 TATGATCTTACAC
1 TATGGTCTTACAC
110611796 ATTAAACCTC
Statistics
Matches: 119, Mismatches: 25, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
66 1 0.01
67 3 0.03
68 112 0.94
69 2 0.02
70 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (68 bp):
TATGGTCTTACACCTTGTAACCTCATGTTTAATGTCTTGACAGACTCTATTAGTTACCATAGCCG
AGC
Found at i:110613169 original size:188 final size:188
Alignment explanation
Indices: 110612852--110613231 Score: 742
Period size: 188 Copynumber: 2.0 Consensus size: 188
110612842 ATTGAGATCC
110612852 AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
1 AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
110612917 CATGCAATTTCACCCAAACTTTCCTTAAATTTCAAGTCAAAGAAAATATTTAAGTGTTACAACTG
66 CATGCAATTTCACCCAAACTTTCCTTAAATTTCAAGTCAAAGAAAATATTTAAGTGTTACAACTG
*
110612982 AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCATTACCTTGCGA
131 AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCAGTACCTTGCGA
110613040 AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
1 AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
*
110613105 CATGCAATTTCACCCAAACTTTCCTTAAATTTCAGGTCAAAGAAAATATTTAAGTGTTACAACTG
66 CATGCAATTTCACCCAAACTTTCCTTAAATTTCAAGTCAAAGAAAATATTTAAGTGTTACAACTG
110613170 AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCAGTACCTTGCGA
131 AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCAGTACCTTGCGA
110613228 AACT
1 AACT
110613232 CATCAAGTCG
Statistics
Matches: 190, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
188 190 1.00
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (188 bp):
AACTAATCTAAACTCAGCCACTAAAATCTCTGAATTTCCCGGTGGAGTCTGAAAATTCACCAACC
CATGCAATTTCACCCAAACTTTCCTTAAATTTCAAGTCAAAGAAAATATTTAAGTGTTACAACTG
AGCATCCTATATGCTTAGCTTTTTTGTTTTCTTTCCCTTGTAGATCAGTACCTTGCGA
Found at i:110616578 original size:22 final size:21
Alignment explanation
Indices: 110616526--110616600 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 21
110616516 TTAATTTATT
*
110616526 AAATT-TTAATTTTTATAGAC
1 AAATTATTAATTTTTATATAC
*
110616546 -ATTTATTAATTTTTATATAC
1 AAATTATTAATTTTTATATAC
110616566 AAATTATTGAATTGTTTA-ATA-
1 AAATTATT-AATT-TTTATATAC
*
110616587 ATATTATTTAATTT
1 AAATTA-TTAATTT
110616601 AATTAGAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
19 3 0.07
20 15 0.33
21 15 0.33
22 9 0.20
23 4 0.09
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.55
Consensus pattern (21 bp):
AAATTATTAATTTTTATATAC
Done.