Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 359 of 425
Found at i:110966419 original size:13 final size:15
Alignment explanation
Indices: 110966388--110966428 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 15
110966378 TCATAGAAAT
110966388 AAATATTATTTAATTA
1 AAATATTATTTAA-TA
110966404 AAATATT-TTTAA-A
1 AAATATTATTTAATA
*
110966417 AAATAATATTTA
1 AAATATTATTTA
110966429 TCTTAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 7 0.30
14 4 0.17
15 5 0.22
16 7 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AAATATTATTTAATA
Found at i:110969018 original size:22 final size:22
Alignment explanation
Indices: 110968987--110969043 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
110968977 AATACGACTG
*
110968987 GCACAAAGCCATAATCAAGATA
1 GCACAGAGCCATAATCAAGATA
* * * *
110969009 GCACAGAGCCAT-ATTAGGCTG
1 GCACAGAGCCATAATCAAGATA
110969030 GCACAGAGCCATAA
1 GCACAGAGCCATAA
110969044 ATAGATTAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.40, C:0.25, G:0.21, T:0.14
Consensus pattern (22 bp):
GCACAGAGCCATAATCAAGATA
Found at i:110969684 original size:18 final size:17
Alignment explanation
Indices: 110969649--110969684 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
110969639 TTTATCTGTG
*
110969649 TGGGCCCACAAGCCCAT
1 TGGGCCCACAAACCCAT
110969666 TGGGCCCACATAACCCAT
1 TGGGCCCACA-AACCCAT
110969684 T
1 T
110969685 TCGACCTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.25, C:0.39, G:0.19, T:0.17
Consensus pattern (17 bp):
TGGGCCCACAAACCCAT
Found at i:110976399 original size:2 final size:2
Alignment explanation
Indices: 110976392--110976423 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
110976382 GCTCATTCGC
110976392 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
110976424 CCATCAATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:110976891 original size:18 final size:18
Alignment explanation
Indices: 110976868--110976923 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
110976858 CCACCACCAA
110976868 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
110976886 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
110976898 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
110976916 CTCCACTA
1 CTCCACTA
110976924 CCTACTCTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 7 0.23
13 3 0.10
14 1 0.03
16 1 0.03
17 3 0.10
18 15 0.50
ACGTcount: A:0.25, C:0.48, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:110976894 original size:30 final size:30
Alignment explanation
Indices: 110976858--110976943 Score: 145
Period size: 30 Copynumber: 2.9 Consensus size: 30
110976848 CTAACCTTTG
110976858 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
110976888 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
110976918 CCACTACCTACTCTACTAGCCACACT
1 CCACCACCAACTCCACTAGCCACACT
110976944 CCACCACCAC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.27, C:0.49, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:110977480 original size:24 final size:23
Alignment explanation
Indices: 110977432--110977483 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
110977422 TTTTTTTTGT
*
110977432 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
110977455 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
110977479 TATTA
1 TATTA
110977484 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:110977557 original size:25 final size:25
Alignment explanation
Indices: 110977432--110977647 Score: 105
Period size: 25 Copynumber: 8.9 Consensus size: 25
110977422 TTTTTTTTGT
* *
110977432 TATTAT-TATATTTC-TTAATATTA
1 TATTATGTATATATCTTTAATACTA
* *
110977455 TATTATATATATATTCTTT--TAATA
1 TATTATGTATATA-TCTTTAATACTA
* * *
110977479 TATTAGGTATAT-TC-TAAATTCTA
1 TATTATGTATATATCTTTAATACTA
* *
110977502 TATTACGTATATATATATT-ATACTA
1 TATTATGTATATATCT-TTAATACTA
*
110977527 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATCTTTAATACTA
* * * **
110977552 TATTATTTATATTTTTTTTCTACATTGTA
1 TATTATGTATA--TATCTT-TA-ATACTA
*
110977581 TCTTATGTATATAT-TTTAAT--TA
1 TATTATGTATATATCTTTAATACTA
* * *
110977603 TATTATGTATGT-T-TTTTACACTA
1 TATTATGTATATATCTTTAATACTA
* *
110977626 TATTATGTACATATTTTTAATA
1 TATTATGTATATATCTTTAATA
110977648 TTATCACTAT
Statistics
Matches: 145, Mismatches: 31, Indels: 32
0.70 0.15 0.15
Matches are distributed among these distances:
21 6 0.04
22 14 0.10
23 32 0.22
24 25 0.17
25 42 0.29
26 5 0.03
27 6 0.04
28 2 0.01
29 13 0.09
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATTATGTATATATCTTTAATACTA
Found at i:110977608 original size:22 final size:23
Alignment explanation
Indices: 110977583--110977642 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
110977573 ACATTGTATC
*
110977583 TTATGTATATATTTTA-ATTATA
1 TTATGTATATATTTTACACTATA
* *
110977605 TTATGTATGTTTTTTACACTATA
1 TTATGTATATATTTTACACTATA
*
110977628 TTATGTACATATTTT
1 TTATGTATATATTTT
110977643 TAATATTATC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
22 14 0.45
23 17 0.55
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.58
Consensus pattern (23 bp):
TTATGTATATATTTTACACTATA
Found at i:110977650 original size:20 final size:20
Alignment explanation
Indices: 110977625--110977682 Score: 57
Period size: 22 Copynumber: 2.9 Consensus size: 20
110977615 TTTTTACACT
110977625 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* *
110977645 ATATTAT-CACTATTTATTTTTT
1 ATATTATGTAC-A--TATTTTTA
110977667 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
110977683 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
19 7 0.23
20 8 0.26
21 4 0.13
22 12 0.39
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:110977681 original size:23 final size:23
Alignment explanation
Indices: 110977639--110977684 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
110977629 TATGTACATA
110977639 TTTTTAATATTATCACTATTTAT
1 TTTTTAATATTATCACTATTTAT
110977662 TTTTTATATATGTA-CA-TATTTAT
1 TTTTTA-ATAT-TATCACTATTTAT
110977685 GTAGTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 13 0.62
24 6 0.29
25 2 0.10
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (23 bp):
TTTTTAATATTATCACTATTTAT
Found at i:110977823 original size:16 final size:15
Alignment explanation
Indices: 110977799--110977846 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
110977789 TAATTATTAT
*
110977799 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
110977815 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
110977830 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
110977846 T
1 T
110977847 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:110977834 original size:7 final size:8
Alignment explanation
Indices: 110977799--110977850 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
110977789 TAATTATTAT
*
110977799 TATTCTAA
1 TATTTTAA
*
110977807 TATTTTGA
1 TATTTTAA
110977815 TATTTTAA
1 TATTTTAA
110977823 TATTTT-A
1 TATTTTAA
110977830 TATTTTATA
1 TATTTTA-A
* *
110977839 TACTTTAT
1 TATTTTAA
110977847 TATT
1 TATT
110977851 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:110985036 original size:73 final size:73
Alignment explanation
Indices: 110984916--110985082 Score: 253
Period size: 73 Copynumber: 2.3 Consensus size: 73
110984906 ATTTCCGTTT
*
110984916 TTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACG
110984981 CTGAGGTAA
65 CTGAGGTAA
* * *
110984990 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGTCTCGGGGCACGC
1 TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
*
110985055 TGAGGTAT
66 TGAGGTAA
* * *
110985063 TTTTAATTTCTGTTTTTCAA
1 TTTCAATTTATGCTTTTCAA
110985083 TTTCTGCTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 67 0.79
74 18 0.21
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (73 bp):
TTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
TGAGGTAA
Found at i:110985106 original size:13 final size:13
Alignment explanation
Indices: 110985062--110985106 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
110985052 CGCTGAGGTA
110985062 TTTTTAATTTCTG
1 TTTTTAATTTCTG
110985075 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
110985089 CTTTTAATTTCTG
1 TTTTTAATTTCTG
110985102 TTTTT
1 TTTTT
110985107 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:110985129 original size:100 final size:101
Alignment explanation
Indices: 110984993--110985278 Score: 407
Period size: 100 Copynumber: 2.9 Consensus size: 101
110984983 GAGGTAATTT
* * * *
110984993 CAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGTCTCGGGGCACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* *
110985058 GGTATTTTTAATTTCTGTTTTTCAATTTCTG-CTTT
66 GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTA
* * *
110985093 TAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGTTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* *
110985158 GGTATTTTCAATTTCTATTTTTCAATTTTTGCCTTA
66 GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTA
* * * *
110985194 CAAATTCTGCTTTTC--AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
110985257 GGTATTTTCAATTTTTGTTTTT
66 GGTATTTTCAATTTCTGTTTTT
110985279 TTAATTTATG
Statistics
Matches: 165, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
99 64 0.39
100 86 0.52
101 15 0.09
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.40
Consensus pattern (101 bp):
CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTA
Found at i:110985278 original size:99 final size:99
Alignment explanation
Indices: 110985000--110985370 Score: 390
Period size: 100 Copynumber: 3.8 Consensus size: 99
110984990 TTTCAATTTA
* * *
110985000 TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGTCTCGGGGCACGCTGAGGTATTT
1 TGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
* ** *
110985065 TTAATTTCTGTTTTTCAATTTCTGCTTTTAATTTC
65 TCAATTTCTGTTTTTCAATTTCTGCTTACAAATTC
* *
110985100 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGTTGAGGTATTT
1 TGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
* *
110985165 TCAATTTCTATTTTTCAATTTTTGCCTTACAAATTC
65 TCAATTTCTGTTTTTCAATTTCTG-CTTACAAATTC
* * *
110985201 TGCTTTTC-AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
1 TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
* * * *
110985265 CAATTTTTGTTTTTTTAATTTATG-TTTCTAAA---
66 CAATTTCTG-TTTTTCAATTTCTGCTTAC-AAATTC
* * * *
110985297 --------AAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
* *
110985354 CAATTTTTGTTTGTCAA
66 CAATTTCTGTTTTTCAA
110985371 AACTCAACTC
Statistics
Matches: 239, Mismatches: 28, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
88 6 0.03
89 60 0.25
98 3 0.01
99 62 0.26
100 93 0.39
101 15 0.06
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (99 bp):
TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTT
CAATTTCTGTTTTTCAATTTCTGCTTACAAATTC
Found at i:110985473 original size:148 final size:148
Alignment explanation
Indices: 110985289--110985918 Score: 791
Period size: 148 Copynumber: 4.4 Consensus size: 148
110985279 TTAATTTATG
* *
110985289 TTTCTAAAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* *
110985354 CAATTTTTGTTTGTCAAAACTCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACATTGA
65 CAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACGTTGA
*
110985419 GGTATTTTCAATTTCTGTT
130 GGTATTTTCAATTTCTGTC
* *
110985438 TTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGAAACGCTGAGGTAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* ** * * ** *
110985503 AATTTTTGTTTGTCAAAACTCAACTCATATTGCGAGAGACACGTT--G----AAG-TATTTTCA-
66 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACGTTGAG
** ***
110985560 --A-TTTCTGTTT-TTCA
131 GTATTTTCAATTTCTGTC
** *
110985574 AA------AAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
110985633 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACGTTGAG
110985698 GTATTTTCAATTTCTGTC
131 GTATTTTCAATTTCTGTC
* * * *
110985716 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGATAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
110985781 AATTTTT-TTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACGTTGAG
110985845 GTATTTTCAATTTCTGTC
131 GTATTTTCAATTTCTGTC
* * * * *
110985863 TTTCAAAAAAA-CAGCTCATATTACGAAAGGTGAGTTGAACCTCA--AGACGCTGAGGT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
110985919 GTTTTCCATT
Statistics
Matches: 419, Mismatches: 44, Indels: 41
0.83 0.09 0.08
Matches are distributed among these distances:
130 96 0.23
132 1 0.00
136 4 0.01
137 11 0.03
138 1 0.00
140 1 0.00
141 11 0.03
142 4 0.01
144 10 0.02
146 32 0.08
147 86 0.21
148 158 0.38
149 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (148 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACGTTGAG
GTATTTTCAATTTCTGTC
Found at i:110985495 original size:75 final size:73
Alignment explanation
Indices: 110985296--110985540 Score: 355
Period size: 73 Copynumber: 3.3 Consensus size: 73
110985286 ATGTTTCTAA
* *
110985296 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
110985361 TGTTTGTC
66 TGTTTGTC
* * * ** * *
110985369 AAAACTCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
*
110985434 TGTTTTTC
66 TGTTTGTC
* *
110985442 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGAAACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
110985507 TTTGTTTGTC
64 TTTGTTTGTC
*
110985517 AAAACTCAACTCATATTGCGAGAG
1 AAAAATCAACTCATATTGCGAGAG
110985541 ACACGTTGAA
Statistics
Matches: 148, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
73 85 0.57
75 63 0.43
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
TGTTTGTC
Found at i:110985642 original size:130 final size:131
Alignment explanation
Indices: 110985408--110985817 Score: 527
Period size: 130 Copynumber: 3.0 Consensus size: 131
110985398 TTGAGCCTCA
*
110985408 AGACACATTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAG
1 AGACACATTGAAGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAG
* *
110985473 TTGAGCCTCAGGAAACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGCGA
66 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
110985538 G
131 G
*
110985539 AGACACGTTGAAGTATTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGATAGGTGAG
1 AGACACATTGAAGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAG
110985603 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
66 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
110985668 G
131 G
* * * * * *
110985669 AGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTC
1 A---GA---CA-CAT--TGA-A-G-T-A--T-TTTC-AATTTCTGTTTTTCAAAAAAATCAACTC
* * * *
110985734 ATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGATAATTTCAATTTTT-TTTGTCAAAA
49 ATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAA
110985798 ATCAACTCATATTGCGAG
114 ATCAACTCATATTGCGAG
110985816 AG
1 AG
110985818 GTGAGTTGAG
Statistics
Matches: 247, Mismatches: 14, Indels: 23
0.87 0.05 0.08
Matches are distributed among these distances:
130 95 0.38
131 32 0.13
133 2 0.01
136 1 0.00
137 2 0.01
139 2 0.01
140 1 0.00
141 1 0.00
142 1 0.00
143 1 0.00
144 1 0.00
145 1 0.00
146 3 0.01
147 42 0.17
148 62 0.25
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (131 bp):
AGACACATTGAAGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAG
TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
G
Found at i:110985674 original size:73 final size:73
Alignment explanation
Indices: 110985539--110985940 Score: 526
Period size: 72 Copynumber: 5.5 Consensus size: 73
110985529 ATATTGCGAG
* * *
110985539 AGACACGTTGAAGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGT
1 AGACACGCTGAGGTATTTTCAATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
110985604 TGAGCCTCA
65 TGAGCCTCA
* * *
110985613 GGACACGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGT
1 AGACACGCTGAGGTATTTTCAATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGT
110985677 TGAGCCTCA
65 TGAGCCTCA
* *
110985686 AGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAG
1 AGACACGCTGAGGTATTTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAG
*
110985751 TTGAACCTCA
64 TTGAGCCTCA
* * *
110985761 AGACACGCTGAGATAATTTCAATTT-TTTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGT
1 AGACACGCTGAGGTATTTTCAATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGT
110985824 TGAGCCTCA
65 TGAGCCTCA
* * * * *
110985833 AGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAACAGCTCATATTACGAAAGGTGAGT
1 AGACACGCTGAGGTATTTTCAATTTCTGT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
*
110985898 TGAACCTCA
65 TGAGCCTCA
* *
110985907 AG--ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAA
1 AGACACGCTGAGGTATTTTCAATTTCTGTT-TTCAA
110985941 TTTCTGTGTT
Statistics
Matches: 289, Mismatches: 30, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
71 1 0.00
72 86 0.30
73 74 0.26
74 69 0.24
75 59 0.20
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (73 bp):
AGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCA
Found at i:110985806 original size:147 final size:148
Alignment explanation
Indices: 110985539--110985910 Score: 642
Period size: 147 Copynumber: 2.5 Consensus size: 148
110985529 ATATTGCGAG
* * * *
110985539 AGACACGTTGAAGTATTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGATAGGTGAG
1 AGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAAAGGTGAG
* * *
110985603 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
66 TTGAACCTCAAGACACGCTGAGATAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
110985668 GAGGTGAGTTGAGCCTCA
131 GAGGTGAGTTGAGCCTCA
*
110985686 AGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAG
1 AGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAAAGGTGAG
110985751 TTGAACCTCAAGACACGCTGAGATAATTTCAATTTTT-TTTGTCAAAAATCAACTCATATTGCGA
66 TTGAACCTCAAGACACGCTGAGATAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
110985815 GAGGTGAGTTGAGCCTCA
131 GAGGTGAGTTGAGCCTCA
*
110985833 AGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAA-CAGCTCATATTACGAAAGGTGAG
1 AGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAAAGGTGAG
110985897 TTGAACCTCAAGAC
66 TTGAACCTCAAGAC
110985911 GCTGAGGTGT
Statistics
Matches: 215, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
146 35 0.16
147 118 0.55
148 62 0.29
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (148 bp):
AGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAAAGGTGAG
TTGAACCTCAAGACACGCTGAGATAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCCTCA
Found at i:110986043 original size:13 final size:14
Alignment explanation
Indices: 110986013--110986045 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
110986003 CACTGAGGTA
110986013 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
110986027 TTTTCAAATAT-TGT
1 TTTTCAAAT-TCTGT
110986041 TTTTC
1 TTTTC
110986046 CAAAAAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.94
15 1 0.06
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:110986079 original size:92 final size:91
Alignment explanation
Indices: 110985928--110986380 Score: 390
Period size: 92 Copynumber: 5.0 Consensus size: 91
110985918 TGTTTTCCAT
* * * *
110985928 TTCTGTTCTTC-AATTTCTGTGTTTCAAAAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGC
1 TTCTGTTTTTCAAATTT-TGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
110985992 CTTGACTCACACACTGAGGTATTTTCAAA
63 CTTGACTCACACACTGAGATATTTTCAAA
* *
110986021 TTCTGTTTTTCAAATATTGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCC-
1 TTCTGTTTTTCAAATTTTGTTTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* ** * *
110986085 TCA-GGACACGCTGAGATATTTTCAAT
65 TGACTCACACACTGAGATATTTTCAAA
* *
110986111 TTCTTTTTTTTTTC-AATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTC---TGTTTTTCAAATTT-TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * *
110986175 CC-TCAGGTCACACACCGAGGTATTTTC-AA
62 CCTTGA-CTCACACACTGAGATATTTTCAAA
* * ** * * *
110986204 TTGATTTTTTTTTAATTTATGCTTTGC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
1 TT-CTGTTTTTCAAATTT-TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * *
110986267 TCGAGTCACATACCGAGATATTTTCAAA
64 TTGACTCACACACTGAGATATTTTCAAA
* * *
110986295 ATCTGTTTTACAAATTTTG-TTTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 TTCTGTTTTTCAAATTTTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
* *** *
110986356 GGCTCACGTGCTGAGCTATTTTCAA
66 GACTCACACACTGAGATATTTTCAA
110986381 TTTATATTTT
Statistics
Matches: 300, Mismatches: 48, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
87 54 0.18
88 3 0.01
89 2 0.01
90 85 0.28
91 13 0.04
92 91 0.30
93 32 0.11
94 20 0.07
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (91 bp):
TTCTGTTTTTCAAATTTTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
GACTCACACACTGAGATATTTTCAAA
Found at i:110986156 original size:184 final size:180
Alignment explanation
Indices: 110985955--110986380 Score: 447
Period size: 184 Copynumber: 2.4 Consensus size: 180
110985945 TGTGTTTCAA
* *
110985955 AAAAAAATCAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCACACACTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCACACACTGAGGTATTTTCAA
* * * *
110986020 ATT-CTGTTTTTCAAATAT-TGTTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAG
66 ATTGATGTTTTTCAAATTTATG-CTTTCC--AAAAATCAACTCATATTACGAGAGGTGAGTTCAG
* * * ** * *
110986083 CCTC-AG-GACACGCTGAGATATTTTCAATTTCTTTTTTTTTTC-AATTTATGTTTGT
128 CCTCGAGTCACACACCGAGATATTTTCAAAATC---TGTTTTACAAATTT-TGTTT-T
* * *
110986138 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGGTCACACACCGAGGTATTTTC
1 -AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGA-CTCACACACTGAGGTATTTTC
* ** * *
110986202 -AATTGATTTTTTTTTAATTTATGCTTTGCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGC
64 AAATTGATGTTTTTCAAATTTATGCTTTCCAAAAATCAACTCATATTACGAGAGGTGAGTTCAGC
*
110986266 CTCGAGTCACATACCGAGATATTTTCAAAATCTGTTTTACAAATTTTGTTTT
129 CTCGAGTCACACACCGAGATATTTTCAAAATCTGTTTTACAAATTTTGTTTT
* * *** *
110986318 --AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCACACACTGAGGTATTTTCAA
110986381 TTTATATTTT
Statistics
Matches: 203, Mismatches: 31, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
177 50 0.25
178 2 0.01
180 1 0.00
181 11 0.05
182 41 0.20
183 8 0.04
184 88 0.43
185 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (180 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCACACACTGAGGTATTTTCAA
ATTGATGTTTTTCAAATTTATGCTTTCCAAAAATCAACTCATATTACGAGAGGTGAGTTCAGCCT
CGAGTCACACACCGAGATATTTTCAAAATCTGTTTTACAAATTTTGTTTT
Found at i:110986378 original size:177 final size:178
Alignment explanation
Indices: 110986049--110986391 Score: 408
Period size: 177 Copynumber: 1.9 Consensus size: 178
110986039 GTTTTTCCAA
* * * * **
110986049 AAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACACGCTGAGATATTTTCAATTTC
1 AAAAATCAACTCATATTACGAGAGGTGAGTTCAGCCTCAGCACACACCGAGATATTTTCAAAATC
* * *
110986114 TTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 --TTGTTTTACAATTTATGTTTGT--AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
* *
110986179 AGGTCACACACCGAGGTATTTTCAATTGATTTTTTTTTAATTTATGCTTTGC
127 AGGTCACACACCGAGCTATTTTCAATTGATATTTTTTTAATTTATGCTTTGC
* *
110986231 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGAGTCACATACCGAGATATTTTCAAAA
1 AAAAATCAACTCATATTACGAGAGGTGAGTTCAGCCTC-AG-CACACACCGAGATATTTTCAAAA
*
110986296 TC-TGTTTTACAAATTT-TGTTT-T-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-T
64 TCTTGTTTTAC-AATTTATGTTTGTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA
*** * *
110986356 GGCTCACGTGCTGAGCTATTTTCAATTTATATTTTT
128 GG-TCACACACCGAGCTATTTTCAATTGATATTTTT
110986392 AATGTCTAGT
Statistics
Matches: 138, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
176 2 0.01
177 62 0.45
180 1 0.01
181 11 0.08
182 41 0.30
183 2 0.01
184 19 0.14
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (178 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTCAGCCTCAGCACACACCGAGATATTTTCAAAATC
TTGTTTTACAATTTATGTTTGTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGT
CACACACCGAGCTATTTTCAATTGATATTTTTTTAATTTATGCTTTGC
Found at i:110986404 original size:87 final size:84
Alignment explanation
Indices: 110986049--110986458 Score: 286
Period size: 87 Copynumber: 4.6 Consensus size: 84
110986039 GTTTTTCCAA
* * ** *
110986049 AAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG--ACACGCTGAGATATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AGGTCACATACCGAGATATTTTCAA--
* *
110986112 TCTTTTTTTTTTCAATTTATGTTTGT
63 T-TTATATTTTT-AATTTA-GTTT-T
* * *
110986138 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCA
1 ---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AGGTCACATACCGAGATATTTTCA
* * *
110986203 ATTGATTTTTTTTTAATTTATGCTTTGC
62 ATT--TATATTTTTAATTTA-G-TTT-T
* * * **
110986231 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGAGTCACATACCGAGATATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAG-GTCACATACCGAGATATTTTCAATT
* * * *
110986296 TCTGTTTTACAAATTTTGTTTT
65 TATATTTT--TAATTTAGTTTT
* * * * *
110986318 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGG-TCACATACCGAGATATTTTCAATT
110986383 TATATTTTTAATGTCTAGTTTT
65 TATATTTTTAAT-T-TAGTTTT
* * * * *
110986405 AAAGAGTCAATTCATATTGCGAGAAATGAGTTAAG-CTCAGGATCACATGCCGAG
1 AAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AGG-TCACATACCGAG
110986459 TAAAGAATAA
Statistics
Matches: 268, Mismatches: 37, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
85 3 0.01
86 2 0.01
87 71 0.26
88 48 0.18
89 2 0.01
90 62 0.23
91 1 0.00
92 49 0.18
93 13 0.05
94 17 0.06
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (84 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGGTCACATACCGAGATATTTTCAATTT
ATATTTTTAATTTAGTTTT
Found at i:110987101 original size:18 final size:18
Alignment explanation
Indices: 110987078--110987133 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
110987068 CCACCACCAA
110987078 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
110987096 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
110987108 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
110987126 CTCCACTA
1 CTCCACTA
110987134 CCTACTCCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 7 0.23
13 3 0.10
14 1 0.03
16 1 0.03
17 3 0.10
18 15 0.50
ACGTcount: A:0.25, C:0.48, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:110987104 original size:30 final size:30
Alignment explanation
Indices: 110987068--110987153 Score: 154
Period size: 30 Copynumber: 2.9 Consensus size: 30
110987058 CTAGCCTTTG
110987068 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
110987098 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
110987128 CCACTACCTACTCCACTAGCCACACT
1 CCACCACCAACTCCACTAGCCACACT
110987154 CCACCACCAC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.27, C:0.50, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:110987688 original size:24 final size:23
Alignment explanation
Indices: 110987640--110987771 Score: 72
Period size: 23 Copynumber: 5.6 Consensus size: 23
110987630 TTTTTTTTGT
*
110987640 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
110987663 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
* * *
110987687 TATTAGGTATA-TTCTAAATTATA
1 TATTA-TTATATTTCTTAATAATA
* * * *
110987710 TATTACGTATATATATT-ATACTA
1 TATTA-TTATATTTCTTAATAATA
* * *
110987733 TTTTATGTATATATCTTTAATACTA
1 TATTAT-TATATTTC-TTAATAATA
110987758 TATTATTTATATTT
1 TATTA-TTATATTT
110987772 TTTTTCTACA
Statistics
Matches: 83, Mismatches: 17, Indels: 16
0.72 0.15 0.14
Matches are distributed among these distances:
22 4 0.05
23 35 0.42
24 22 0.27
25 21 0.25
26 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:110987745 original size:25 final size:25
Alignment explanation
Indices: 110987708--110987855 Score: 90
Period size: 25 Copynumber: 6.0 Consensus size: 25
110987698 TTCTAAATTA
*
110987708 TATATTACGTATATATA-TT-ATAC
1 TATATTATGTATATATATTTAATAC
* *
110987731 TATTTTATGTATATATCTTTAATAC
1 TATATTATGTATATATATTTAATAC
* * * **
110987756 TATATTATTTATATTTTTTTTCTACATGT
1 TATATTATGTATA--TATATT-TA-ATAC
*
110987785 TATCTTATGTATATAT-TTTAAT--
1 TATATTATGTATATATATTTAATAC
* * * *
110987807 TATATTATGTATGTATTTTTTACAC
1 TATATTATGTATATATATTTAATAC
* *
110987832 TATATTATGTACATATTTTTAATA
1 TATATTATGTATATATATTTAATA
110987856 TTATCACTAT
Statistics
Matches: 96, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
22 14 0.15
23 18 0.19
24 4 0.04
25 37 0.39
26 2 0.02
27 6 0.06
28 2 0.02
29 13 0.14
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.57
Consensus pattern (25 bp):
TATATTATGTATATATATTTAATAC
Found at i:110987858 original size:20 final size:20
Alignment explanation
Indices: 110987833--110987890 Score: 57
Period size: 22 Copynumber: 2.9 Consensus size: 20
110987823 TTTTTACACT
110987833 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* *
110987853 ATATTAT-CACTATTTATTTTTT
1 ATATTATGTAC-A--TATTTTTA
110987875 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
110987891 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
19 7 0.23
20 8 0.26
21 4 0.13
22 12 0.39
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:110987889 original size:23 final size:23
Alignment explanation
Indices: 110987847--110987892 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
110987837 TATGTACATA
110987847 TTTTTAATATTATCACTATTTAT
1 TTTTTAATATTATCACTATTTAT
110987870 TTTTTATATATGTA-CA-TATTTAT
1 TTTTTA-ATAT-TATCACTATTTAT
110987893 GTAGTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 13 0.62
24 6 0.29
25 2 0.10
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (23 bp):
TTTTTAATATTATCACTATTTAT
Found at i:110988037 original size:16 final size:15
Alignment explanation
Indices: 110988013--110988060 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
110988003 TAATTATTAT
*
110988013 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
110988029 TATTTTAATATTTTA
1 TATTTTAATATTTTA
*
110988044 TATTTTATATACTTTA
1 TATTTTA-ATATTTTA
110988060 T
1 T
110988061 TATTCACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:110988048 original size:7 final size:8
Alignment explanation
Indices: 110988013--110988064 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
110988003 TAATTATTAT
*
110988013 TATTCTAA
1 TATTTTAA
*
110988021 TATTTTGA
1 TATTTTAA
110988029 TATTTTAA
1 TATTTTAA
110988037 TATTTT-A
1 TATTTTAA
110988044 TATTTTATA
1 TATTTTA-A
* *
110988053 TACTTTAT
1 TATTTTAA
110988061 TATT
1 TATT
110988065 CACATCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 7 0.19
8 22 0.61
9 7 0.19
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:110992910 original size:32 final size:32
Alignment explanation
Indices: 110992855--110992923 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
110992845 TCAAAATGAA
* *
110992855 AAAATATAGGAACTAATTCTAGAATTTAACCT
1 AAAATATAGGAACCAATTATAGAATTTAACCT
110992887 AAAATATAAGG-ACCAATTATAGAATTTAACCT
1 AAAATAT-AGGAACCAATTATAGAATTTAACCT
110992919 AAAAT
1 AAAAT
110992924 TTTCGTTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 31 0.91
33 3 0.09
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.29
Consensus pattern (32 bp):
AAAATATAGGAACCAATTATAGAATTTAACCT
Found at i:111001208 original size:42 final size:42
Alignment explanation
Indices: 111001092--111001198 Score: 160
Period size: 42 Copynumber: 2.5 Consensus size: 42
111001082 CTACCGGTCC
* * *
111001092 TACTTCTTCCGGTTTACTTAGGAGTTCTCCTATGACTGCTCT
1 TACTTCTTCCGGGTTACTTAGGAGTTCTCCTATAACTACTCT
*
111001134 TACTTCTTCTGGGTTACTTAGGAGTTCTCCTATAACTACTCT
1 TACTTCTTCCGGGTTACTTAGGAGTTCTCCTATAACTACTCT
* *
111001176 TACTTTTTCCGGGTTAATTAGGA
1 TACTTCTTCCGGGTTACTTAGGA
111001199 ATCATCCTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (42 bp):
TACTTCTTCCGGGTTACTTAGGAGTTCTCCTATAACTACTCT
Found at i:111001218 original size:42 final size:41
Alignment explanation
Indices: 111001092--111001218 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 41
111001082 CTACCGGTCC
*
111001092 TACTTCTTCCGGTTTACTTAGGAGTTCTCCTATGACTGCTCT
1 TACTTCTTCCGGGTTACTTAGGAGTTCTCCTATG-CTGCTCT
* * *
111001134 TACTTCTTCTGGGTTACTTAGGAGTTCTCCTATAACTACTCT
1 TACTTCTTCCGGGTTACTTAGGAGTTCTCCTAT-GCTGCTCT
* * *
111001176 TACTTTTTCCGGGTTAATTAGGA-ATCATCCTATGCTTGCTCT
1 TACTTCTTCCGGGTTACTTAGGAGTTC-TCCTATGC-TGCTCT
111001218 T
1 T
111001219 CCTCAAAATA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.04
42 69 0.96
ACGTcount: A:0.17, C:0.24, G:0.16, T:0.43
Consensus pattern (41 bp):
TACTTCTTCCGGGTTACTTAGGAGTTCTCCTATGCTGCTCT
Found at i:111011696 original size:2 final size:2
Alignment explanation
Indices: 111011689--111011717 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
111011679 AAGTCTTCAT
111011689 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
111011718 TTGCTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:111015490 original size:32 final size:32
Alignment explanation
Indices: 111015454--111015515 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
111015444 TACTTTTAGG
*
111015454 TTTAACTGTTAGCAT-TAATTGTTTTGTTAAGT
1 TTTAACTGTTAGCATGT-ATTGTTTGGTTAAGT
*
111015486 TTTAACTGTTAGTATGTATTGTTTGGTTAA
1 TTTAACTGTTAGCATGTATTGTTTGGTTAA
111015516 ATTTGTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.24, C:0.05, G:0.18, T:0.53
Consensus pattern (32 bp):
TTTAACTGTTAGCATGTATTGTTTGGTTAAGT
Found at i:111015738 original size:27 final size:28
Alignment explanation
Indices: 111015683--111015745 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
111015673 ATAAAAGATT
111015683 AAATTTAAAATTTTAGAAAAATATAAAA
1 AAATTTAAAATTTTAGAAAAATATAAAA
111015711 AAATTTAAAATTTTAGAAAAATAT-AAA
1 AAATTTAAAATTTTAGAAAAATATAAAA
111015738 AAATTTAA
1 AAATTTAA
111015746 CCTGAAATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 11 0.31
28 24 0.69
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (28 bp):
AAATTTAAAATTTTAGAAAAATATAAAA
Found at i:111016074 original size:18 final size:18
Alignment explanation
Indices: 111016048--111016083 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
111016038 AAACTAAATT
111016048 AATTCGGTTAATCGATCG
1 AATTCGGTTAATCGATCG
*
111016066 AATTTGGTTAATCGATCG
1 AATTCGGTTAATCGATCG
111016084 GTTAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (18 bp):
AATTCGGTTAATCGATCG
Found at i:111017624 original size:13 final size:13
Alignment explanation
Indices: 111017606--111017631 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
111017596 TCAGTTCTGT
111017606 AAATCCACTAGCA
1 AAATCCACTAGCA
111017619 AAATCCACTAGCA
1 AAATCCACTAGCA
111017632 CAATTCAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15
Consensus pattern (13 bp):
AAATCCACTAGCA
Found at i:111023539 original size:24 final size:27
Alignment explanation
Indices: 111023493--111023543 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 27
111023483 GTATATAAAA
111023493 AAATAAAATTATTAAATGAATTAAAATT
1 AAATAAAATTATTAAAT-AATTAAAATT
111023521 AAAT-AAATT-TTAAAT-ATTAAAAT
1 AAATAAAATTATTAAATAATTAAAAT
111023544 ATTAATGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 8 0.35
26 6 0.26
27 5 0.22
28 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (27 bp):
AAATAAAATTATTAAATAATTAAAATT
Found at i:111025951 original size:20 final size:20
Alignment explanation
Indices: 111025915--111025954 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
111025905 TTAAAAAATT
*
111025915 ATAATTTTTATACTTTTTAA
1 ATAATTTTAATACTTTTTAA
111025935 ATAATTTTAATTA-TTTTTAA
1 ATAATTTTAA-TACTTTTTAA
111025955 TTTATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
ATAATTTTAATACTTTTTAA
Found at i:111025957 original size:16 final size:18
Alignment explanation
Indices: 111025936--111025971 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
111025926 ACTTTTTAAA
111025936 TAATTT-TAAT-TATTTT
1 TAATTTATAATATATTTT
111025952 TAATTTATAATATATTTT
1 TAATTTATAATATATTTT
111025970 TA
1 TA
111025972 TTATTTTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 4 0.22
18 8 0.44
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TAATTTATAATATATTTT
Found at i:111026451 original size:17 final size:17
Alignment explanation
Indices: 111026426--111026459 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
111026416 AAAATGCTTA
111026426 TAAACAAATATTAATTT
1 TAAACAAATATTAATTT
*
111026443 TAAATAAATATTAATTT
1 TAAACAAATATTAATTT
111026460 ATTGATTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAACAAATATTAATTT
Found at i:111026993 original size:5 final size:5
Alignment explanation
Indices: 111026983--111027009 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
111026973 AATTTGTGTG
111026983 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
111027010 TTTCACAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:111036367 original size:46 final size:44
Alignment explanation
Indices: 111036308--111036422 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
111036298 ACAGGACAGA
* *
111036308 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
111036354 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
111036398 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
111036423 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:111036403 original size:44 final size:45
Alignment explanation
Indices: 111036308--111036441 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
111036298 ACAGGACAGA
* *
111036308 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
111036354 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
111036398 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
111036442 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:111043732 original size:46 final size:44
Alignment explanation
Indices: 111043673--111043787 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
111043663 ACAGGACAGA
* *
111043673 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
111043719 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
111043763 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
111043788 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:111043768 original size:44 final size:45
Alignment explanation
Indices: 111043673--111043806 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
111043663 ACAGGACAGA
* *
111043673 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
111043719 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
111043763 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
111043807 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:111045578 original size:19 final size:19
Alignment explanation
Indices: 111045534--111045578 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
111045524 TAGTGTGTTT
*
111045534 AATTAGGCTTAATTAGGTGA
1 AATTA-GCTTAATTAGGAGA
*
111045554 ATTTAGCTTAATTAGGAGA
1 AATTAGCTTAATTAGGAGA
111045573 AATTAG
1 AATTAG
111045579 GAAAAAGGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (19 bp):
AATTAGCTTAATTAGGAGA
Found at i:111046157 original size:2 final size:2
Alignment explanation
Indices: 111046150--111046184 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
111046140 TTTAAGTTTA
111046150 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
111046185 TATTAAATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:111048494 original size:30 final size:25
Alignment explanation
Indices: 111048436--111048487 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
111048426 CTTTATTAAA
111048436 AATACATTCATGTCATTATTAAGCT
1 AATACATTCATGTCATTATTAAGCT
111048461 AATACATTCATGTCATTATTAAGCT
1 AATACATTCATGTCATTATTAAGCT
111048486 AA
1 AA
111048488 CATAATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (25 bp):
AATACATTCATGTCATTATTAAGCT
Found at i:111059238 original size:37 final size:37
Alignment explanation
Indices: 111059188--111059265 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
111059178 TTTATATTTC
*
111059188 TTATTTTATAATTTAGTCTGATTGATGCCAAAACATT
1 TTATTTTATAATTTAGTCCGATTGATGCCAAAACATT
111059225 TTATTTTATAATTTAGTCCGATTGATGCCAAAACATT
1 TTATTTTATAATTTAGTCCGATTGATGCCAAAACATT
111059262 TTAT
1 TTAT
111059266 ACTTATCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (37 bp):
TTATTTTATAATTTAGTCCGATTGATGCCAAAACATT
Found at i:111060931 original size:98 final size:98
Alignment explanation
Indices: 111060762--111060948 Score: 347
Period size: 98 Copynumber: 1.9 Consensus size: 98
111060752 AGGGGCTATA
111060762 GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAACACATCAACCACGGGTTTTTATCACAT
1 GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAACACATCAACCACGGGTTTTTATCACAT
111060827 CTTATATCACACATGCACATAAATCTCCTATTG
66 CTTATATCACACATGCACATAAATCTCCTATTG
**
111060860 GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAAGGCATCAACCACGGGTTTTTATCACAT
1 GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAACACATCAACCACGGGTTTTTATCACAT
*
111060925 CTTATATCACATATGCACATAAAT
66 CTTATATCACACATGCACATAAAT
111060949 TAAGCTATTG
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (98 bp):
GAAATGAATTTGTAATGCACATAAGTGTTTTGCCATAACACATCAACCACGGGTTTTTATCACAT
CTTATATCACACATGCACATAAATCTCCTATTG
Found at i:111061214 original size:99 final size:99
Alignment explanation
Indices: 111061036--111061214 Score: 214
Period size: 99 Copynumber: 1.8 Consensus size: 99
111061026 ATATCATTTG
* * * * * * *
111061036 AAATCAAATCGTGGAAGCAATGTTTAACACATATTTCCACTTAGCATTATTTCGTAGTACTTATA
1 AAATCAAATCGTGGAAACAATGTTTAACACATATTTACACTTAGAATCATTTCATAGCACTTACA
* * *
111061101 ATTGATGTAGCATTATTTCACCATTCTATTATTC
66 ATGGACGCAGCATTATTTCACCATTCTATTATTC
* * ** *
111061135 AAATCATATTGTGGAAACAATGTTTAACACATATTTATGCTTAGAATCATTTCATAGCACTTACC
1 AAATCAAATCGTGGAAACAATGTTTAACACATATTTACACTTAGAATCATTTCATAGCACTTACA
*
111061200 ATGGACGCATCATTA
66 ATGGACGCAGCATTA
111061215 CGTGTGTGTA
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
99 64 1.00
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (99 bp):
AAATCAAATCGTGGAAACAATGTTTAACACATATTTACACTTAGAATCATTTCATAGCACTTACA
ATGGACGCAGCATTATTTCACCATTCTATTATTC
Found at i:111062779 original size:15 final size:17
Alignment explanation
Indices: 111062761--111062792 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
111062751 TAGCATAATT
111062761 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
111062776 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
111062793 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:111068613 original size:24 final size:24
Alignment explanation
Indices: 111068581--111068656 Score: 143
Period size: 24 Copynumber: 3.2 Consensus size: 24
111068571 TGCAAGAAAG
111068581 CTCATCAAATACCCTGATAGAGTT
1 CTCATCAAATACCCTGATAGAGTT
*
111068605 CTCATCAAATACCTTGATAGAGTT
1 CTCATCAAATACCCTGATAGAGTT
111068629 CTCATCAAATACCCTGATAGAGTT
1 CTCATCAAATACCCTGATAGAGTT
111068653 CTCA
1 CTCA
111068657 AGCCAAAACT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (24 bp):
CTCATCAAATACCCTGATAGAGTT
Found at i:111069958 original size:15 final size:17
Alignment explanation
Indices: 111069940--111069971 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
111069930 TAGCATAATT
111069940 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
111069955 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
111069972 CAAGTATCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:111074727 original size:23 final size:22
Alignment explanation
Indices: 111074699--111074779 Score: 76
Period size: 21 Copynumber: 3.7 Consensus size: 22
111074689 TTTACCGATC
* *
111074699 AGGCACTTTATGTGTCGTATTT
1 AGGCACCTCATGTGTCGTATTT
* *
111074721 CAGGCACCTCGTGTGCCGTA-TT
1 -AGGCACCTCATGTGTCGTATTT
*
111074743 AGGCACCTCGTGTGTCGT-TTT
1 AGGCACCTCATGTGTCGTATTT
* *
111074764 AGGCACTTTATGTGTC
1 AGGCACCTCATGTGTC
111074780 ATATACTGAT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
21 32 0.65
22 2 0.04
23 15 0.31
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (22 bp):
AGGCACCTCATGTGTCGTATTT
Found at i:111074746 original size:21 final size:21
Alignment explanation
Indices: 111074722--111074769 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
111074712 GTCGTATTTC
111074722 AGGCACCTCGTGTGCCGTATT
1 AGGCACCTCGTGTGCCGTATT
* *
111074743 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCGTGTGCCGTATT
111074764 AGGCAC
1 AGGCAC
111074770 TTTATGTGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.29, T:0.29
Consensus pattern (21 bp):
AGGCACCTCGTGTGCCGTATT
Found at i:111076409 original size:33 final size:33
Alignment explanation
Indices: 111076383--111076489 Score: 142
Period size: 33 Copynumber: 3.2 Consensus size: 33
111076373 ATCCTTCCAA
*
111076383 CACACTAATGCTTATAAGAGCTAATCCAACCAT
1 CACACCAATGCTTATAAGAGCTAATCCAACCAT
* * *
111076416 CACACCAATACTGATAAGAGCTAAACCAACCAT
1 CACACCAATGCTTATAAGAGCTAATCCAACCAT
* ** *
111076449 CACACCAATGCTTATAAGAGTTAAAGCAATCAT
1 CACACCAATGCTTATAAGAGCTAATCCAACCAT
111076482 CACACCAA
1 CACACCAA
111076490 ACAGAGAGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 65 1.00
ACGTcount: A:0.43, C:0.28, G:0.09, T:0.20
Consensus pattern (33 bp):
CACACCAATGCTTATAAGAGCTAATCCAACCAT
Found at i:111084512 original size:212 final size:213
Alignment explanation
Indices: 111084131--111084515 Score: 684
Period size: 212 Copynumber: 1.8 Consensus size: 213
111084121 ATTGGGCAAT
* * *
111084131 TTACACTTTTGGGCTCTTATACTTTTCAAAATTTATAATTTGATTCTTTTTACCAAAATCTCATA
1 TTACACTTTTGGGATCTTATACTTTTCAAAATTTATAATTTGATCCTTTTTACCAAAATCTCAAA
111084196 TTCACAACCATTCTCAAATAGTTCCTTTTCAAAAAATCAAATTAATTCATTAAGATTTCATTTAT
66 TTCACAACCATTCTCAAATAGTTCCTTTTCAAAAAATCAAATTAATTCATTAAGATTTCATTTAT
111084261 TACACTTGTTTTCAAATGATTATTCATATTAAGATTATTATGTCTGGACTAACAATACATTGCAC
131 TACACTTGTTTTCAAATGATTATTCATATTAAGATTATTATGTCTGGACTAACAATACATTGCAC
111084326 ATAAAATTCAATAACATA
196 ATAAAATTCAATAACATA
* *
111084344 TTACAC-TTTGGGATCTTATACTTTTCAAAATTTTTAATTTGGTCCTTTTTACCAAAATCTCAAA
1 TTACACTTTTGGGATCTTATACTTTTCAAAATTTATAATTTGATCCTTTTTACCAAAATCTCAAA
*
111084408 TTCACAACCATTCTCAAAT-GTTTCCTTTTCAAAAAATCAAATTAATTCTTTAAGATTTCATTTA
66 TTCACAACCATTCTCAAATAG-TTCCTTTTCAAAAAATCAAATTAATTCATTAAGATTTCATTTA
*
111084472 TTACACTTGTTTTCAAATGATTATTCATATTAGGATTATTATGT
130 TTACACTTGTTTTCAAATGATTATTCATATTAAGATTATTATGT
111084516 TGTCTATAAG
Statistics
Matches: 164, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
211 1 0.01
212 157 0.96
213 6 0.04
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.43
Consensus pattern (213 bp):
TTACACTTTTGGGATCTTATACTTTTCAAAATTTATAATTTGATCCTTTTTACCAAAATCTCAAA
TTCACAACCATTCTCAAATAGTTCCTTTTCAAAAAATCAAATTAATTCATTAAGATTTCATTTAT
TACACTTGTTTTCAAATGATTATTCATATTAAGATTATTATGTCTGGACTAACAATACATTGCAC
ATAAAATTCAATAACATA
Found at i:111087686 original size:16 final size:16
Alignment explanation
Indices: 111087665--111087695 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
111087655 AAGAACATGT
*
111087665 AAAAGAAGAAGAAAAA
1 AAAAGAAAAAGAAAAA
111087681 AAAAGAAAAAGAAAA
1 AAAAGAAAAAGAAAA
111087696 GGGTTTTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAGAAAAA
Found at i:111088580 original size:10 final size:11
Alignment explanation
Indices: 111088554--111088580 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
111088544 CTTTCTTTAT
111088554 ATTTTTTTAAA
1 ATTTTTTTAAA
111088565 ATTTTTTTAAA
1 ATTTTTTTAAA
111088576 ATTTT
1 ATTTT
111088581 AATTTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
ATTTTTTTAAA
Found at i:111088641 original size:19 final size:20
Alignment explanation
Indices: 111088600--111088643 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
111088590 AAATATATAA
*
111088600 ATTTTAGAATTTTTATAAAT
1 ATTTTAGAATTTTTAAAAAT
111088620 ATTTTA-AA-TTTTAAAAATT
1 ATTTTAGAATTTTTAAAAA-T
111088639 ATTTT
1 ATTTT
111088644 TTAATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 8 0.36
19 8 0.36
20 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTTAGAATTTTTAAAAAT
Found at i:111088665 original size:11 final size:12
Alignment explanation
Indices: 111088634--111088665 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
111088624 TAAATTTTAA
111088634 AAATTATTTTTT
1 AAATTATTTTTT
111088646 -AATTATTTTTT
1 AAATTATTTTTT
111088657 AAATT-TTTT
1 AAATTATTTT
111088666 GTTGAGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
AAATTATTTTTT
Found at i:111089395 original size:30 final size:30
Alignment explanation
Indices: 111089356--111089413 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
111089346 AAATATATAA
111089356 ATCATT-AAAATAATATAATTACAATTTTATT
1 ATCATTAAAAAT-ATATAATT-CAATTTTATT
*
111089387 ATCA-TAAAAATATATAATTTAATTTTA
1 ATCATTAAAAATATATAATTCAATTTTA
111089414 ATTCTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 7 0.28
30 9 0.36
31 9 0.36
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (30 bp):
ATCATTAAAAATATATAATTCAATTTTATT
Found at i:111089397 original size:31 final size:29
Alignment explanation
Indices: 111089356--111089413 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
111089346 AAATATATAA
*
111089356 ATCATTAAAATAATATAATTACAATTTTATT
1 ATCATAAAAAT-ATATAATT-CAATTTTATT
*
111089387 ATCATAAAAATATATAATTTAATTTTA
1 ATCATAAAAATATATAATTCAATTTTA
111089414 ATTCTCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 7 0.28
30 8 0.32
31 10 0.40
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (29 bp):
ATCATAAAAATATATAATTCAATTTTATT
Found at i:111090150 original size:3 final size:3
Alignment explanation
Indices: 111090142--111090186 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
111090132 TACATTCTGA
111090142 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
111090187 GTTATTTTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:111097234 original size:15 final size:15
Alignment explanation
Indices: 111097216--111097267 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
111097206 TACTACAAAA
111097216 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
111097231 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
111097250 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
111097265 ATT
1 ATT
111097268 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:111097331 original size:16 final size:16
Alignment explanation
Indices: 111097300--111097336 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
111097290 ATGTGAATAA
111097300 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
111097316 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
111097332 TATTA
1 TATTA
111097337 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:111102804 original size:15 final size:15
Alignment explanation
Indices: 111102784--111102813 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
111102774 TTGTTTGGTT
111102784 TATATACAGGGAATA
1 TATATACAGGGAATA
111102799 TATATACAGGGAATA
1 TATATACAGGGAATA
111102814 GGAATTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (15 bp):
TATATACAGGGAATA
Found at i:111114168 original size:1 final size:1
Alignment explanation
Indices: 111114162--111114191 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
111114152 TTATCTTTGC
111114162 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
111114192 GCCCTGTGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:111114357 original size:16 final size:16
Alignment explanation
Indices: 111114336--111114366 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
111114326 TATTTCTAGG
111114336 TTACTATCGATTGTTT
1 TTACTATCGATTGTTT
111114352 TTACTATCGATTGTT
1 TTACTATCGATTGTT
111114367 CTTTGAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55
Consensus pattern (16 bp):
TTACTATCGATTGTTT
Found at i:111117372 original size:89 final size:89
Alignment explanation
Indices: 111117268--111117471 Score: 252
Period size: 89 Copynumber: 2.3 Consensus size: 89
111117258 CAATTTAAAA
* * *
111117268 AAAAAAAGTAATTAAACCCCT-CTTTTTTTTTTTACTCAATTGAACT-CTTGAACTTTCAAAATG
1 AAAAAAAGCAATTAAACCCCTGCTTTTTATTTTCACTCAA-TG-ACTACTTGAACTTTCAAAATG
* * *
111117331 TATAAAAAAGACCCTTAAACTTCTTC
64 CATAAAAAAGACCCTCAAAATTCTTC
* **
111117357 AAAAAAAGCAATTAAATCCCTGCTTTTTATTTTCACTCAATGGGTACTTGAACTTTCAAAATGCA
1 AAAAAAAGCAATTAAACCCCTGCTTTTTATTTTCACTCAATGACTACTTGAACTTTCAAAATGCA
*
111117422 TAAAAAAGACCCTCAAAATTTTTC
66 TAAAAAAGACCCTCAAAATTCTTC
* * *
111117446 -AAAAATGCAATTAAGCCCATGCTTTT
1 AAAAAAAGCAATTAAACCCCTGCTTTT
111117472 ATTATAAATT
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
88 23 0.23
89 60 0.61
90 16 0.16
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.34
Consensus pattern (89 bp):
AAAAAAAGCAATTAAACCCCTGCTTTTTATTTTCACTCAATGACTACTTGAACTTTCAAAATGCA
TAAAAAAGACCCTCAAAATTCTTC
Found at i:111117568 original size:19 final size:21
Alignment explanation
Indices: 111117540--111117590 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 21
111117530 TTTTAAAAAA
111117540 TATATAAAAAATTAG-AATTT
1 TATATAAAAAATTAGAAATTT
111117560 TAT-T-AAAAATTAGAAATTT
1 TATATAAAAAATTAGAAATTT
*
111117579 TTTATAAAAAAT
1 TATATAAAAAAT
111117591 CTTAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 9 0.33
19 8 0.30
20 4 0.15
21 6 0.22
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (21 bp):
TATATAAAAAATTAGAAATTT
Found at i:111123078 original size:44 final size:44
Alignment explanation
Indices: 111123030--111124024 Score: 234
Period size: 44 Copynumber: 22.6 Consensus size: 44
111123020 CATTTCAATT
* * * *
111123030 TGCTCCACTATTGCTTAGGGAGATATGATCTGTAATTTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* *
111123074 TGCTCCACTGCTGCTTAGGGAGATAAGATCTGCACTCTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * **** * **
111123118 TGTTCCACTACTACTTAGGGAGATAGGGT-TGGTGGCTTGAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* ** * * * *
111123161 TGCTCTA-TTGTCACTATATGGAGATAAGAT-TCGTC-GTCTTC-GATC
1 TGCTCCACTACT-GCT-TAGGGAGATAAGATCT-G-CAATCTTCAG-CC
* *
111123206 TGCTCCGCTACTACTTAGGGAGATAAGATCTGCAATCTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * *** ** **
111123250 TGTTCCACTACTGCTTAGGGAGATAAG-GCTGCTGGCTGAAAAC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * ** * * * *
111123293 TACTCCATTGCCACTACATGGAGATAAGAT-T-CACCGTCTTC-GATC
1 TGCTCCACTACTGCT-TAGGGAGATAAGATCTGCA--ATCTTCAG-CC
* *
111123338 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* **** * **
111123382 TGTTCCACTACTGCTTAGGGAGATAAGA-CTGGTGGCTTGAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * * *
111123425 TGCTCCATTTTCACTAC--ATGGAAATACGAT-T-C-ATCGTCCTC-GATC
1 TGCTCCA--CT-ACTGCTTAGGGAGATAAGATCTGCAATC-T--TCAG-CC
* *
111123470 TGCTCCACTATTGCTTAAGGAGATAAGATCTGCAATCTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * **** * **
111123514 TGTTCAACTACTGCTTAGAGAGATAAG-GCTGGTGGCTTGAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * * *
111123557 TGCTCCATTTCTGCTACATGGAGATACGAT-T-CATCATCTTC-GATC
1 TGCTCCACTACTGCT-TAGGGAGATAAGATCTGCA--ATCTTCAG-CC
* ** **** * ***
111123602 TGTTCCACTACTGCTTAGGGAGAT-AGGGCTGGTGGCTTGAATT
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * * * *
111123645 TGCTCCATTCCCGCTACATGGAGATAAGATTTGTC-ATCTTC-GATC
1 TGCTCCACTACTGCT-TAGGGAGATAAGATCTG-CAATCTTCAG-CC
* *
111123690 TGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTTAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * *** * **
111123734 TGTTCCGCTACTGCTTAGGGAGATAAG-GCTGCTGGCTTGAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * * * * * * *
111123777 TGCTCCATTGCCGCTACATGAAGATAAGGTTTGTC-ATCTTC-GATC
1 TGCTCCACTACTGCT-TAGGGAGATAAGATCTG-CAATCTTCAG-CC
* * *
111123822 TGCTCTACTACTACTTAGGGAGATAAGATCTTCAATCTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
* * * *** * **
111123866 TGTTCCGCTACTGCTTAGGGAGATAAG-GCTGCTGGCTTGAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
** * * * * *
111123909 TGCTCCA-TTTTCGCTACATGGAGATACGAT-T-CATCGTCTTC-GATC
1 TGCTCCACTACT-GCT-TAGGGAGATAAGATCTGCA--ATCTTCAG-CC
** *
111123954 TGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCC
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
*
111123998 TGTTCCACTACTGCTTAGGGAGATAAG
1 TGCTCCACTACTGCTTAGGGAGATAAG
111124025 GCTGGTGGCT
Statistics
Matches: 654, Mismatches: 236, Indels: 122
0.65 0.23 0.12
Matches are distributed among these distances:
42 8 0.01
43 122 0.19
44 388 0.59
45 119 0.18
46 14 0.02
47 3 0.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (44 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCC
Found at i:111123233 original size:132 final size:132
Alignment explanation
Indices: 111123073--111123626 Score: 806
Period size: 132 Copynumber: 4.2 Consensus size: 132
111123063 AATTTTCAGC
* * *
111123073 CTGCTCCACTGCTGCTTAGGGAGATAAGATCTGCACTCTTCAGCCTGTTCCACTACTACTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * * *
111123138 AGATAGGGTTGGTGGCTTGAATCTGCTCTATTGTCACTATATGGAGATAAGATTCGTCGTCTTCG
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTCACTACATGGAGATAAGATTCATCGTCTTCG
111123203 AT
131 AT
* *
111123205 CTGCTCCGCTACTACTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * * *
111123270 AGATAAGGCTGCTGGC-TGAAAACTACTCCATTGCCACTACATGGAGATAAGATTCACCGTCTTC
66 AGATAAGGCTGGTGGCTTG-AATCTGCTCCATTGTCACTACATGGAGATAAGATTCATCGTCTTC
111123334 GAT
130 GAT
* *
111123337 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTGTTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * * *
111123402 AGATAAGACTGGTGGCTTGAATCTGCTCCATTTTCACTACATGGAAATACGATTCATCGTCCTCG
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTCACTACATGGAGATAAGATTCATCGTCTTCG
111123467 AT
131 AT
* * * *
111123469 CTGCTCCACTATTGCTTAAGGAGATAAGATCTGCAATCTTCAGCCTGTTCAACTACTGCTTAGAG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * *
111123534 AGATAAGGCTGGTGGCTTGAATCTGCTCCATT-TCTGCTACATGGAGATACGATTCATCATCTTC
66 AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTC-ACTACATGGAGATAAGATTCATCGTCTTC
111123598 GAT
130 GAT
*
111123601 CTGTTCCACTACTGCTTAGGGAGATA
1 CTGCTCCACTACTGCTTAGGGAGATA
111123627 GGGCTGGTGG
Statistics
Matches: 376, Mismatches: 43, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
131 4 0.01
132 370 0.98
133 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (132 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
AGATAAGGCTGGTGGCTTGAATCTGCTCCATTGTCACTACATGGAGATAAGATTCATCGTCTTCG
AT
Found at i:111123539 original size:220 final size:220
Alignment explanation
Indices: 111123313--111123849 Score: 562
Period size: 220 Copynumber: 2.4 Consensus size: 220
111123303 CCACTACATG
* * *
111123313 GAGATAAGATTCACCGTCTTCG-ATCTGCTCCACTACTGCT-TAGGGAGATAAGA-TC-TACAAT
1 GAGATAAGACT-ACCGGCTT-GAATCTGCTCCACTACTGCTACAGGGAGATAAGATTCAT-C-AT
**
111123374 CTTTAG-CCTGTTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTGAATCTGCTCCATTTTCA
62 C-TTAGACCTGTTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTGAATCTGCTCCATTCCCA
* * * *
111123438 CTACATGGAAATACGATTCATCGTCCTCGATCTGCTCCACTATTGCTTAAGGAGATAAGATCTGC
126 CTACATGGAAATAAGATTCATCATCCTCGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGC
111123503 AATCTTCAGCCTGTTCAACTACTGCTTAGA
191 AATCTTCAGCCTGTTCAACTACTGCTTAGA
* *** * * * * *
111123533 GAGATAAGGCTGGTGGCTTGAATCTGCTCCATTTCTGCTACATGGAGATACGATTCATCATCTTC
1 GAGATAAGACTACCGGCTTGAATCTGCTCCACTACTGCTACAGGGAGATAAGATTCATCATCTTA
* * * * *
111123598 GATCTGTTCCACTACTGCTTAGGGAGATAGGGCTGGTGGCTTGAATTTGCTCCATTCCCGCTACA
66 GACCTGTTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTGAATCTGCTCCATTCCCACTACA
* ** * *
111123663 TGGAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCT
131 TGGAAATAAGATTCATCATCCTCGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGCAATCT
* ** *
111123728 TTAGCCTGTTCCGCTACTGCTTAGG
196 TCAGCCTGTTCAACTACTGCTTAGA
* * * * * * * * * ** *
111123753 GAGATAAGGCTGCTGGCTTGAATCTGCTCCATTGCCGCTACATGAAGATAAGGTTTGTCATCTTC
1 GAGATAAGACTACCGGCTTGAATCTGCTCCACTACTGCTACAGGGAGATAAGATTCATCATCTTA
* * * *
111123818 GATCTGCTCTACTACTACTTAGGGAGATAAGA
66 GACCTGTTCCACTACTGCTTAGGGAGATAAGA
111123850 TCTTCAATCT
Statistics
Matches: 267, Mismatches: 45, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
218 1 0.00
219 23 0.09
220 239 0.90
221 3 0.01
222 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (220 bp):
GAGATAAGACTACCGGCTTGAATCTGCTCCACTACTGCTACAGGGAGATAAGATTCATCATCTTA
GACCTGTTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTGAATCTGCTCCATTCCCACTACA
TGGAAATAAGATTCATCATCCTCGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGCAATCT
TCAGCCTGTTCAACTACTGCTTAGA
Found at i:111123580 original size:88 final size:87
Alignment explanation
Indices: 111123488--111123716 Score: 264
Period size: 88 Copynumber: 2.6 Consensus size: 87
111123478 TATTGCTTAA
111123488 GGAGATAAGATCTGCA-ATCTTC-AGCCTGTTCAACTACTGCTTAGAGAGATAAGGCTGGTGGCT
1 GGAGATAAGAT-T-CACATCTTCGA-CCTGTTCAACTACTGCTTAGAGAGATAAGGCTGGTGGCT
* *
111123551 TGAATCTGCTCCATTTCTGCTACAT
63 TGAATCTGCTCCATTCCCGCTACAT
* * * * *
111123576 GGAGATACGATTCATCATCTTCGATCTGTTCCACTACTGCTTAGGGAGATAGGGCTGGTGGCTTG
1 GGAGATAAGATTCA-CATCTTCGACCTGTTCAACTACTGCTTAGAGAGATAAGGCTGGTGGCTTG
*
111123641 AATTTGCTCCATTCCCGCTACAT
65 AATCTGCTCCATTCCCGCTACAT
** * * * * *
111123664 GGAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAG
1 GGAGATAAGA-TTCACATCTTCGACCTGTTCAACTACTGCTTAGAGAGATAAG
111123717 ATCTGCAATC
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
86 2 0.02
87 1 0.01
88 117 0.95
89 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (87 bp):
GGAGATAAGATTCACATCTTCGACCTGTTCAACTACTGCTTAGAGAGATAAGGCTGGTGGCTTGA
ATCTGCTCCATTCCCGCTACAT
Found at i:111123669 original size:132 final size:131
Alignment explanation
Indices: 111123576--111124158 Score: 740
Period size: 132 Copynumber: 4.4 Consensus size: 131
111123566 TCTGCTACAT
* * * *
111123576 GGAGATACGATTCATCATCTTC-GATCTGTTCCACTACTGCTTAGGGAGATAGGGCTGGTGGCTT
1 GGAGATAAGA-TCATCATCTTCAG-CCTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTT
* * * *
111123640 GAATTTGCTCCATTCCCGCTACATGGAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTACT
64 GAATCTGCTCCATTTCCGCTACATGGAGATAAGATTGGTCGTCTTCGATCTGCTCCACTACTACT
111123705 TAG
129 TAG
* *
111123708 GGAGATAAGATC-TGCAATCTTTAGCCTGTTCCGCTACTGCTTAGGGAGATAAGGCTGCTGGCTT
1 GGAGATAAGATCAT-C-ATCTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTT
* * * * * *
111123772 GAATCTGCTCCATTGCCGCTACATGAAGATAAGGTTTGTCATCTTCGATCTGCTCTACTACTACT
64 GAATCTGCTCCATTTCCGCTACATGGAGATAAGATTGGTCGTCTTCGATCTGCTCCACTACTACT
111123837 TAG
129 TAG
* *
111123840 GGAGATAAGATCTTCAATCTTCAGCCTGTTCCGCTACTGCTTAGGGAGATAAGGCTGCTGGCTTG
1 GGAGATAAGATCATC-ATCTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTTG
* * ** *
111123905 AATCTGCTCCATTTTCGCTACATGGAGATACGATTCATCGTCTTCGATCTGCTCCACTACTGCTT
65 AATCTGCTCCATTTCCGCTACATGGAGATAAGATTGGTCGTCTTCGATCTGCTCCACTACTACTT
111123970 AG
130 AG
* * *
111123972 GGAGATAAGATCTATAATTTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGGTGGCTTG
1 GGAGATAAGATC-ATCATCTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTTG
* * * * ** * *
111124037 AATCTGCTCTATTTTCACTACATGGAGATACGATTCATCGTCTTTGATCTACTCCACTACTACTT
65 AATCTGCTCCATTTCCGCTACATGGAGATAAGATTGGTCGTCTTCGATCTGCTCCACTACTACTT
111124102 AG
130 AG
* * *
111124104 GGAGATAATATC-TGCAATCTTTAGCCTGTTCCACTACTGCTTAGAGAGATAAGGC
1 GGAGATAAGATCAT-C-ATCTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGGC
111124159 AAGTTGAAAT
Statistics
Matches: 407, Mismatches: 37, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
130 2 0.00
131 3 0.01
132 399 0.98
133 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (131 bp):
GGAGATAAGATCATCATCTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTTGA
ATCTGCTCCATTTCCGCTACATGGAGATAAGATTGGTCGTCTTCGATCTGCTCCACTACTACTTA
G
Found at i:111123687 original size:352 final size:352
Alignment explanation
Indices: 111123249--111123980 Score: 1092
Period size: 352 Copynumber: 2.1 Consensus size: 352
111123239 AATCTTCAGC
*
111123249 CTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTGAAAACTACTCCATTGCCACTACATGG
1 CTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTGAAAACTACTCCATTCCCACTACATGG
* *
111123314 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTA
66 AGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTTA
* **
111123379 GCCTGTTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTGAATCTGCTCCATTTTCACTACAT
131 GCCTGTTCCACTACTGCTTAGGGAGATAAGACTGCTGGCTTGAATCTGCTCCATTGCCACTACAT
* * * *
111123444 GGAA-ATACGATTCATCGTCCTCGATCTGCTCCACTATTGCTTAAGGAGATAAGATCTGCAATCT
196 -GAAGATAAGATTCATCATCCTCGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGCAATCT
*
111123508 TCAGCCTGTTCAACTACTGCTTAGAGAGATAAGGCTGGTGGCTTGAATCTGCTCCA-TTTCTGCT
260 TCAGCCTGTTCAACTACTGCTTAGAGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTTTC-GCT
111123572 ACATGGAGATACGATTCATCATCTTCGAT
324 ACATGGAGATACGATTCATCATCTTCGAT
* * ** * *
111123601 CTGTTCCACTACTGCTTAGGGAGATAGGGCTGGTGGCTTG-AATTTGCTCCATTCCCGCTACATG
1 CTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGC-TGAAAACTACTCCATTCCCACTACATG
*** *
111123665 GAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTT
65 GAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTT
* * *
111123730 AGCCTGTTCCGCTACTGCTTAGGGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTGCCGCTACA
130 AGCCTGTTCCACTACTGCTTAGGGAGATAAGACTGCTGGCTTGAATCTGCTCCATTGCCACTACA
* ** * * * *
111123795 TGAAGATAAGGTTTGTCATCTTCGATCTGCTCTACTACTACTTAGGGAGATAAGATCTTCAATCT
195 TGAAGATAAGATTCATCATCCTCGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGCAATCT
** *
111123860 TCAGCCTGTTCCGCTACTGCTTAGGGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTTTCGCTA
260 TCAGCCTGTTCAACTACTGCTTAGAGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTTTCGCTA
*
111123925 CATGGAGATACGATTCATCGTCTTCGAT
325 CATGGAGATACGATTCATCATCTTCGAT
*
111123953 CTGCTCCACTACTGCTTAGGGAGATAAG
1 CTGTTCCACTACTGCTTAGGGAGATAAG
111123981 ATCTATAATT
Statistics
Matches: 340, Mismatches: 37, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
351 3 0.01
352 331 0.97
353 6 0.02
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (352 bp):
CTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTGAAAACTACTCCATTCCCACTACATGG
AGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTTA
GCCTGTTCCACTACTGCTTAGGGAGATAAGACTGCTGGCTTGAATCTGCTCCATTGCCACTACAT
GAAGATAAGATTCATCATCCTCGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGCAATCTT
CAGCCTGTTCAACTACTGCTTAGAGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTTTCGCTAC
ATGGAGATACGATTCATCATCTTCGAT
Found at i:111123758 original size:264 final size:263
Alignment explanation
Indices: 111123213--111124024 Score: 664
Period size: 264 Copynumber: 3.1 Consensus size: 263
111123203 ATCTGCTCCG
* *
111123213 CTACTACTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGAGAGATAAGG
* * * * * * * *
111123278 CTGCTGGC-TGAAAACTACTCCATTGCCACTACATGGAGATAAGATTCACCGTCTTCGATCTGCT
66 CTGGTGGCTTG-AATCTGCTCCATTACTACTACATGGAGATAAGATTCATCATCTTCGATCTGTT
** * *** * ** * * * * *
111123342 CCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTGTTCCACTACTGCT-TAGGGAGAT
130 CCACTACTGCTTAGGGAGAT-AGGGCTGCTGGCTTGAATCTGCTCCATTACCGCTACATGGAGAT
* * * * * * * *
111123406 AAGACTGGT-GGCTT-GAATCTGCTCCATTTTCACTAC--ATGGAAATACGAT-TC-ATCGTCCT
194 AAGATTCGTCGTCTTCG-ATCTGCTCCA--CT-ACTACTTAGGGAGATAAGATCTCAATC-T-TT
* * *
111123465 CGATCTGCTCCA
253 AG-CCTGTTCCA
* * *
111123477 CTATTGCTTAAGGAGATAAGATCTGCAATCTTCAGCCTGTTCAACTACTGCTTAGAGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGAGAGATAAGG
* * *
111123542 CTGGTGGCTTGAATCTGCTCCATTTCTGCTACATGGAGATACGATTCATCATCTTCGATCTGTTC
66 CTGGTGGCTTGAATCTGCTCCATTACTACTACATGGAGATAAGATTCATCATCTTCGATCTGTTC
* * *
111123607 CACTACTGCTTAGGGAGATAGGGCTGGTGGCTTGAATTTGCTCCATTCCCGCTACATGGAGATAA
131 CACTACTGCTTAGGGAGATAGGGCTGCTGGCTTGAATCTGCTCCATTACCGCTACATGGAGATAA
* *
111123672 GATTTGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTTAGCCTGT
196 GATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCT-CAATCTTTAGCCTGT
*
111123737 TCCG
260 TCCA
* *** * ** * * * * *
111123741 CTACTGCTTAGGGAGATAAG-GCTGCTGGCTTGAATCTGCTCCATTGCCGC-TACATGAAGATAA
1 CTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGA-G-AGATAA
* * ** * * * * * *
111123804 GGTTTGTCATCTTCG-ATCTGCTCTACTACTACT-TAGGGAGATAAGA-TCTTCAATCTTC-AGC
64 GGCTGGT-GGCTT-GAATCTGCTCCATTACTACTACATGGAGATAAGATTCATC-ATCTTCGA-T
* * **
111123865 CTGTTCCGCTACTGCTTAGGGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTTTCGCTACATGG
125 CTGTTCCACTACTGCTTAGGGAGATAGGGCTGCTGGCTTGAATCTGCTCCATTACCGCTACATGG
* * * *
111123930 AGATACGATTCATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT-TTTC
190 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCT-CAATCTTT-
111123994 AGCCTGTTCCA
253 AGCCTGTTCCA
111124005 CTACTGCTTAGGGAGATAAG
1 CTACTGCTTAGGGAGATAAG
111124025 GCTGGTGGCT
Statistics
Matches: 445, Mismatches: 87, Indels: 32
0.79 0.15 0.06
Matches are distributed among these distances:
262 8 0.02
263 47 0.11
264 348 0.78
265 35 0.08
266 4 0.01
267 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (263 bp):
CTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGAGAGATAAGG
CTGGTGGCTTGAATCTGCTCCATTACTACTACATGGAGATAAGATTCATCATCTTCGATCTGTTC
CACTACTGCTTAGGGAGATAGGGCTGCTGGCTTGAATCTGCTCCATTACCGCTACATGGAGATAA
GATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTCAATCTTTAGCCTGTT
CCA
Found at i:111123890 original size:220 final size:220
Alignment explanation
Indices: 111123464--111123892 Score: 518
Period size: 220 Copynumber: 1.9 Consensus size: 220
111123454 TTCATCGTCC
* *
111123464 TCGATCTGCTCCACTATTGCTTAAGGAGATAAGATCTGCAATCTTCAGCCTGTTCAACTACTGCT
1 TCGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGCAATCTTCAGCCTGTTCAACTACTGCT
* * * * *
111123529 TAGAGAGATAAGGCTGGTGGCTTGAATCTGCTCCATTTCTGCTACATGGAGATACGATTCATCAT
66 TAGAGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTGCCGCTACATGAAGATAAGATTCATCAT
* * * *** * ** * *
111123594 CTTCGATCTGTTCCACTACTGCTTAGGGAGATAGGGCTGGTGGCTTGAATTTGCTCCATTCCCGC
131 CTTCGATCTGCTCCACTACTACTTAGGGAGATAGAGCTGCAAGCTTCAACCTGCTCCACTACCGC
*
111123659 TACATGGAGATAAGATTTGTCATCT
196 TACAGGGAGATAAGATTTGTCATCT
* * **
111123684 TCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTTAGCCTGTTCCGCTACTGCT
1 TCGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGCAATCTTCAGCCTGTTCAACTACTGCT
* * **
111123749 TAGGGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTGCCGCTACATGAAGATAAGGTTTGTCAT
66 TAGAGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTGCCGCTACATGAAGATAAGATTCATCAT
* * * * * * * *
111123814 CTTCGATCTGCTCTACTACTACTTAGGGAGATAAGATCTTCAATCTTCAGCCTGTTCCGCTACTG
131 CTTCGATCTGCTCCACTACTACTTAGGGAGAT-AGAGCTGCAAGCTTCAACCTGCTCCACTACCG
*
111123879 CT-TAGGGAGATAAG
195 CTACAGGGAGATAAG
111123893 GCTGCTGGCT
Statistics
Matches: 172, Mismatches: 36, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
220 154 0.90
221 18 0.10
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (220 bp):
TCGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGCAATCTTCAGCCTGTTCAACTACTGCT
TAGAGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTGCCGCTACATGAAGATAAGATTCATCAT
CTTCGATCTGCTCCACTACTACTTAGGGAGATAGAGCTGCAAGCTTCAACCTGCTCCACTACCGC
TACAGGGAGATAAGATTTGTCATCT
Found at i:111123954 original size:484 final size:484
Alignment explanation
Indices: 111123117--111124110 Score: 1551
Period size: 484 Copynumber: 2.1 Consensus size: 484
111123107 ACTCTTCAGC
* * ** *
111123117 CTGTTCCACTACTACTTAGGGAGATAGGGTTGGTGGCTTGAATCTGCTCTATTGTCACTATATGG
1 CTGTTCCACTACTACTTAGGGAGATAGGGCTGGTGGCTTGAATCTGCTCCATTCCCACTACATGG
* *
111123182 AGATAAGATTCGTCGTCTTCGATCTGCTCCGCTACTACTTAGGGAGATAAGATCTGCAATCTTCA
66 AGATAAGATTCGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTCA
111123247 GCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTGAAAACTACTCCATTGCCACTACAT
131 GCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTGAAAACTACTCCATTGCCACTACAT
* * *
111123312 GGAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT
196 GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTT
* *
111123377 TAGCCTGTTCCACTACTGCTTAGGGAGATAAGACTGGTGGCTTGAATCTGCTCCATTTTCACTAC
261 CAGCCTGTTCCACTACTGCTTAGGGAGATAAGACTGCTGGCTTGAATCTGCTCCATTTTCACTAC
* *
111123442 ATGGAAATACGATTCATCGTCCTCGATCTGCTCCACTATTGCTTAAGGAGATAAGATCTGCAATC
326 ATGGAAATACGATTCATCGTCCTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAATC
*
111123507 TTCAGCCTGTTCAACTACTGCTTAGAGAGATAAGGCTGGTGGCTTGAATCTGCTCCA-TTTCTGC
391 TTCAGCCTGTTCAACTACTGCTTAGAGAGATAAGGCTGGTGGCTTGAATCTGCTCCATTTTC-AC
111123571 TACATGGAGATACGATTCATCATCTTCGAT
455 TACATGGAGATACGATTCATCATCTTCGAT
* * *
111123601 CTGTTCCACTACTGCTTAGGGAGATAGGGCTGGTGGCTTGAATTTGCTCCATTCCCGCTACATGG
1 CTGTTCCACTACTACTTAGGGAGATAGGGCTGGTGGCTTGAATCTGCTCCATTCCCACTACATGG
* *
111123666 AGATAAGATTTGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTTA
66 AGATAAGATTCGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTCA
* * * *
111123731 GCCTGTTCCGCTACTGCTTAGGGAGATAAGGCTGCTGGCTTG-AATCTGCTCCATTGCCGCTACA
131 GCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGC-TGAAAACTACTCCATTGCCACTACA
* *** * *
111123795 TGAAGATAAGGTTTGTCATCTTCGATCTGCTCTACTACTACTTAGGGAGATAAGATCTTCAATCT
195 TGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCT
* * *
111123860 TCAGCCTGTTCCGCTACTGCTTAGGGAGATAAGGCTGCTGGCTTGAATCTGCTCCATTTTCGCTA
260 TCAGCCTGTTCCACTACTGCTTAGGGAGATAAGACTGCTGGCTTGAATCTGCTCCATTTTCACTA
* * * *
111123925 CATGGAGATACGATTCATCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
325 CATGGAAATACGATTCATCGTCCTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAAT
* * * *
111123990 TTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGGTGGCTTGAATCTGCTCTATTTTCAC
390 CTTCAGCCTGTTCAACTACTGCTTAGAGAGATAAGGCTGGTGGCTTGAATCTGCTCCATTTTCAC
* *
111124055 TACATGGAGATACGATTCATCGTCTTTGAT
455 TACATGGAGATACGATTCATCATCTTCGAT
**
111124085 CTACTCCACTACTACTTAGGGAGATA
1 CTGTTCCACTACTACTTAGGGAGATA
111124111 ATATCTGCAA
Statistics
Matches: 462, Mismatches: 46, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
484 456 0.99
485 6 0.01
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (484 bp):
CTGTTCCACTACTACTTAGGGAGATAGGGCTGGTGGCTTGAATCTGCTCCATTCCCACTACATGG
AGATAAGATTCGTCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTCA
GCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGCTGGCTGAAAACTACTCCATTGCCACTACAT
GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTT
CAGCCTGTTCCACTACTGCTTAGGGAGATAAGACTGCTGGCTTGAATCTGCTCCATTTTCACTAC
ATGGAAATACGATTCATCGTCCTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAATC
TTCAGCCTGTTCAACTACTGCTTAGAGAGATAAGGCTGGTGGCTTGAATCTGCTCCATTTTCACT
ACATGGAGATACGATTCATCATCTTCGAT
Found at i:111141298 original size:2 final size:2
Alignment explanation
Indices: 111141291--111141330 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
111141281 CAAAGCATCA
*
111141291 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
111141331 GCATTTTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:111144381 original size:26 final size:26
Alignment explanation
Indices: 111144352--111144404 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
111144342 TCAAACATGC
111144352 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
111144378 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
111144404 A
1 A
111144405 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:111145919 original size:26 final size:26
Alignment explanation
Indices: 111145890--111145973 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
111145880 CATGAAATTC
111145890 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
111145916 TTATCATGAAACAATTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
111145942 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
111145968 TTATCA
1 TTATCA
111145974 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:111152926 original size:66 final size:64
Alignment explanation
Indices: 111152829--111152998 Score: 155
Period size: 65 Copynumber: 2.6 Consensus size: 64
111152819 TAAGGCATAC
* *
111152829 ATACTGACTTGTATC-ACACGGCCGAG-GACACGCCTGTGTGCCAGGCCATGTGAAAACTGAAGG
1 ATACTGACTTATA-CAACACGGCC-AGTCACACGCCTGTGTGCCAGGCCATGTGAAAA-TGAAGG
*
111152892 GT
63 GA
* * * * * ** * *
111152894 ATACTGACTTATGCAACACGGCCAAGTCACACGCCCGTGTTCTAGGCCGTGTGCCAATTAGGGGA
1 ATACTGACTTATACAACACGGCC-AGTCACACGCCTGTGTGCCAGGCCATGTGAAAATGAAGGGA
* * *
111152959 ATACTGACTTGTACCACACGGCCAGTCACACGCCTATGTG
1 ATACTGACTTATACAACACGGCCAGTCACACGCCTGTGTG
111152999 TGAGACCGTA
Statistics
Matches: 84, Mismatches: 19, Indels: 5
0.78 0.18 0.05
Matches are distributed among these distances:
64 15 0.18
65 46 0.55
66 23 0.27
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (64 bp):
ATACTGACTTATACAACACGGCCAGTCACACGCCTGTGTGCCAGGCCATGTGAAAATGAAGGGA
Found at i:111164880 original size:628 final size:628
Alignment explanation
Indices: 111163684--111164937 Score: 2175
Period size: 628 Copynumber: 2.0 Consensus size: 628
111163674 CACTGAGAAA
* *
111163684 CAAAGCTAAACAGTCGTTGAACTCGTTACCATGAGGGTCTATCACTACTTGGGAACAAATGACCG
1 CAAAGCTAAACAGTCGTTGAACTAGTTACCACGAGGGTCTATCACTACTTGGGAACAAATGACCG
**
111163749 AATTTTTTTTACTAAAATACTTTCCGCCAGCTAAAATGGCAAAATAACGCAATGATATCTCTTCT
66 AAAATTTTTTACTAAAATACTTTCCGCCAGCTAAAATGGCAAAATAACGCAATGATATCTCTTCT
111163814 TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATGGGAGAGATACAAGGACATACTGAGAAG
131 TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATGGGAGAGATACAAGGACATACTGAGAAG
* *
111163879 GTGCCCTCACCATGGGTTACCGCTTTGGCTTCAAATACAAACATTCTACAATGGTCTGAATCCCT
196 GTGCCCTCACCATGGGTTACCACTTTGGCTTCAAATACAAACATTCCACAATGGTCTGAATCCCT
* * *
111163944 CGACTCGGTAAATGGTTGACGCGGCTATTGGCAGAACCATCAACAATAAAACACCGGAAGATGCC
261 CGACTCGGCAAATGGTTGACGCGGCTACTGGCAGAACCATCAACAATAAAACACCGAAAGATGCC
111164009 TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATAAGGACAAAGCCAAC
326 TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATAAGGACAAAGCCAAC
** *
111164074 AAAAACAGTCGGTGTTTATAACGTCGACTCAGTTACTATACTGTCAAATCAGGTAGAACTTCCCA
391 AAAAACAGTCGACGTTTATAACGTCGAATCAGTTACTATACTGTCAAATCAGGTAGAACTTCCCA
* * *
111164139 ATAAAAAGATTAATGGTTTACTTGGTTCTACGCAGGTATATCCAGTAATGAGGTGTGACGCGAGT
456 ATAAAAAGATTAATGGTTTACTTGGTTCTACGCAGGTACATCCAATAATAAGGTGTGACGCGAGT
*
111164204 GGAAGAGGTGTGCATACAGAATATCAATCCTTCAATCCTACAACCGAAGAGGAACAAGTCAACTA
521 GGAAGAGGTGTGCATACAGAATATCAATCCTTCAATCCCACAACCGAAGAGGAACAAGTCAACTA
111164269 TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACAAG
586 TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACAAG
*
111164312 CAAAGCTAAACAGTGGTTGAACTAGTTACCACGAGGGTCTATCACTACTTGGGAACAAATGACCG
1 CAAAGCTAAACAGTCGTTGAACTAGTTACCACGAGGGTCTATCACTACTTGGGAACAAATGACCG
* *
111164377 AAAATTTTTTACTAAAATACTTTCCGCCAGCTAAAATGGCTAAATTACGCAATGATATCTCTTCT
66 AAAATTTTTTACTAAAATACTTTCCGCCAGCTAAAATGGCAAAATAACGCAATGATATCTCTTCT
*
111164442 TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATGGGAGAGATACAAGGACTTACTGAGAAG
131 TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATGGGAGAGATACAAGGACATACTGAGAAG
* *
111164507 GTGCCCTCACCATGGGTTACCACTTTGGCTTCAAATACAAATATTCCACAATGGTTTGAATCCCT
196 GTGCCCTCACCATGGGTTACCACTTTGGCTTCAAATACAAACATTCCACAATGGTCTGAATCCCT
* * *
111164572 CGACTCGGCAAATGGTTGACGCGGCTGCTGGCGGAACCATCAACAATAAAACATCGAAAGATGCC
261 CGACTCGGCAAATGGTTGACGCGGCTACTGGCAGAACCATCAACAATAAAACACCGAAAGATGCC
*
111164637 TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATGAGGACAAAGCCAAC
326 TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATAAGGACAAAGCCAAC
* * * ** *
111164702 GAAAATAGTCGACGTTTATAACGTCGAATTAGTTACTATGTTGTCAAATCAGGTAGAACTTTCCA
391 AAAAACAGTCGACGTTTATAACGTCGAATCAGTTACTATACTGTCAAATCAGGTAGAACTTCCCA
* * * *
111164767 ATAAAAAGATTGATGGTTTACTTGGTTCTACGCAGGTACATCTAATAATAAGGTGTGATGTGAGT
456 ATAAAAAGATTAATGGTTTACTTGGTTCTACGCAGGTACATCCAATAATAAGGTGTGACGCGAGT
*
111164832 GGAGGAGGTGTGCATACAGAATATCAATCCTTCAATCCCACAACCGAAGAGGAACAAGTCAACTA
521 GGAAGAGGTGTGCATACAGAATATCAATCCTTCAATCCCACAACCGAAGAGGAACAAGTCAACTA
111164897 TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACA
586 TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACA
111164938 GTAATACTTA
Statistics
Matches: 589, Mismatches: 37, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
628 589 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (628 bp):
CAAAGCTAAACAGTCGTTGAACTAGTTACCACGAGGGTCTATCACTACTTGGGAACAAATGACCG
AAAATTTTTTACTAAAATACTTTCCGCCAGCTAAAATGGCAAAATAACGCAATGATATCTCTTCT
TTTGTGCAAATGGATTTAGAAACACTTTACGATGCATGGGAGAGATACAAGGACATACTGAGAAG
GTGCCCTCACCATGGGTTACCACTTTGGCTTCAAATACAAACATTCCACAATGGTCTGAATCCCT
CGACTCGGCAAATGGTTGACGCGGCTACTGGCAGAACCATCAACAATAAAACACCGAAAGATGCC
TATGAGTTTATAGAGGAGATGTCACTGAATAACTATCAGTGGCAAGTTATAAGGACAAAGCCAAC
AAAAACAGTCGACGTTTATAACGTCGAATCAGTTACTATACTGTCAAATCAGGTAGAACTTCCCA
ATAAAAAGATTAATGGTTTACTTGGTTCTACGCAGGTACATCCAATAATAAGGTGTGACGCGAGT
GGAAGAGGTGTGCATACAGAATATCAATCCTTCAATCCCACAACCGAAGAGGAACAAGTCAACTA
TATGGGTAACAATAACTTTAGATCTCAAAATAACCCATACAAG
Found at i:111170106 original size:48 final size:48
Alignment explanation
Indices: 111170014--111170106 Score: 107
Period size: 48 Copynumber: 1.9 Consensus size: 48
111170004 TAAATTACTG
* * * * *
111170014 ACTAAAATACGTTGTGGATAAACCATTAGTAGTTCATATGAACTGCCA
1 ACTAAAATACGTTATGGATAAACCACTAGTAGTACAAATAAACTGCCA
* *
111170062 ACTAAAATACGTTATGGATAAATCACTGGCT-GTACAAATAAACTG
1 ACTAAAATACGTTATGGATAAACCACTAG-TAGTACAAATAAACTG
111170107 TCGACTACTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
48 36 0.97
49 1 0.03
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (48 bp):
ACTAAAATACGTTATGGATAAACCACTAGTAGTACAAATAAACTGCCA
Found at i:111176965 original size:16 final size:17
Alignment explanation
Indices: 111176939--111176974 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
111176929 TATTATGAAT
*
111176939 ATATATGTGTAAATGTG
1 ATATATGTGTAAATATG
111176956 ATAT-TGTGTAAATATG
1 ATATATGTGTAAATATG
111176972 ATA
1 ATA
111176975 CTTGGAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (17 bp):
ATATATGTGTAAATATG
Found at i:111177102 original size:27 final size:25
Alignment explanation
Indices: 111177077--111177180 Score: 123
Period size: 22 Copynumber: 4.4 Consensus size: 25
111177067 GAACCTTAGC
111177077 GTGCTCTCTGATTATTAGCACATTA
1 GTGCTCTCTGATTATTAGCACATTA
*
111177102 GTGCTCTCTGATTATTGGCACATTA
1 GTGCTCTCTGATTATTAGCACATTA
*
111177127 GTGCTCTC-CA-T-TTAGCACATTCA
1 GTGCTCTCTGATTATTAGCACATT-A
*
111177150 -TGCTCTCTG--TA-TAGCACTTTA
1 GTGCTCTCTGATTATTAGCACATTA
111177171 GTGCTCTCTG
1 GTGCTCTCTG
111177181 TTTAATAGTG
Statistics
Matches: 70, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.01
22 34 0.49
23 2 0.03
24 1 0.01
25 32 0.46
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.39
Consensus pattern (25 bp):
GTGCTCTCTGATTATTAGCACATTA
Found at i:111177145 original size:47 final size:44
Alignment explanation
Indices: 111177091--111177178 Score: 115
Period size: 47 Copynumber: 1.9 Consensus size: 44
111177081 TCTCTGATTA
*
111177091 TTAGCACATT-AGTGCTCTCTGATTATTGGCACATTAGTGCTCTCCAT
1 TTAGCACATTCA-TGCTCTCTG--TA-TAGCACATTAGTGCTCTCCAT
*
111177138 TTAGCACATTCATGCTCTCTGTATAGCACTTTAGTGCTCTC
1 TTAGCACATTCATGCTCTCTGTATAGCACATTAGTGCTCTC
111177179 TGTTTAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
44 16 0.42
45 2 0.05
47 19 0.50
48 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (44 bp):
TTAGCACATTCATGCTCTCTGTATAGCACATTAGTGCTCTCCAT
Found at i:111180095 original size:27 final size:27
Alignment explanation
Indices: 111180047--111180204 Score: 162
Period size: 27 Copynumber: 5.9 Consensus size: 27
111180037 GCGAGGCTGC
* * *
111180047 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGATA
111180074 CAGATATTGTGGCAAAGCCACCAGA-A
1 CAGATATTGTGGCAAAGCCACCAGATA
*
111180100 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
* *
111180127 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAAAGCCACCAGATA
** *
111180154 CAGATATATGTGGCAGGGCCACCAAAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
*
111180181 CAGATAATTGTGGCATAGCCACCA
1 CAGAT-ATTGTGGCAAAGCCACCA
111180205 AGACGCTTCC
Statistics
Matches: 112, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 10 0.09
27 98 0.88
28 4 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGATA
Found at i:111180137 original size:54 final size:54
Alignment explanation
Indices: 111180065--111180204 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 54
111180055 GTGACGAAGT
*
111180065 CACCAGATACAGAT-ATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
111180119 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGGGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
111180173 CACCAAATCAGATAATTGTGGCATAGCCACCA
1 CACCAGATCAGATAATTGTGGCATAGCCACCA
111180205 AGACGCTTCC
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 76 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:111181814 original size:26 final size:26
Alignment explanation
Indices: 111181783--111181890 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
111181773 TGAAATGCCC
111181783 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
111181809 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
111181835 ATCATGGAATATTTATCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
111181861 ATCATGGAACATTTACCT-AACCGATT
1 ATCATGGAACATTTACCTAAACC-ATT
111181887 ATCA
1 ATCA
111181891 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
25 3 0.04
26 71 0.96
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:111187404 original size:38 final size:38
Alignment explanation
Indices: 111187315--111187511 Score: 236
Period size: 38 Copynumber: 5.1 Consensus size: 38
111187305 TAAAACCCAA
* * * * *
111187315 ATATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAG
1 ATATAATACCAGCACTAAGCCTGCGGGA-TTT-AACCCGG
*
111187355 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
111187393 ATATAATACCAGCA-TGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACT-AAGCCTGCGGGATTTAACCCGG
* *
111187431 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* *
111187469 ATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACTA-AGCCTGCGGG-ATTTAA-CCCGG
111187509 ATA
1 ATA
111187512 CAATCTCAGC
Statistics
Matches: 139, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
37 2 0.01
38 97 0.70
39 8 0.06
40 32 0.23
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
Found at i:111191035 original size:28 final size:28
Alignment explanation
Indices: 111191004--111191058 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
111190994 TTTTATTAAA
*
111191004 AAAAATAATCTTTAATAAATAGAATTAT
1 AAAAATAATCCTTAATAAATAGAATTAT
111191032 AAAAATAATCCTTAATAAATAGAATTA
1 AAAAATAATCCTTAATAAATAGAATTA
111191059 CATTTGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (28 bp):
AAAAATAATCCTTAATAAATAGAATTAT
Found at i:111192816 original size:47 final size:47
Alignment explanation
Indices: 111192747--111192843 Score: 169
Period size: 47 Copynumber: 2.1 Consensus size: 47
111192737 TTCACACAAC
*
111192747 ATGTTCTGTCAAAAGCATGCTATTTAAG-TTCATCTTTGCTTAGTTTA
1 ATGTTCTGTCAAAAGCATGCTATTT-AGCTTCATCTTTGCTCAGTTTA
111192794 ATGTTCTGTCAAAAGCATGCTATTTAGCTTCATCTTTGCTCAGTTTA
1 ATGTTCTGTCAAAAGCATGCTATTTAGCTTCATCTTTGCTCAGTTTA
111192841 ATG
1 ATG
111192844 GAGGTTTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 2 0.04
47 46 0.96
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.43
Consensus pattern (47 bp):
ATGTTCTGTCAAAAGCATGCTATTTAGCTTCATCTTTGCTCAGTTTA
Found at i:111195907 original size:23 final size:22
Alignment explanation
Indices: 111195881--111195924 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
111195871 AATTATTTTA
111195881 ATTTAATGATATTTTTTGAAATT
1 ATTTAATGATATTTTTT-AAATT
* **
111195904 ATTTTATTTTATTTTTTAAAT
1 ATTTAATGATATTTTTTAAAT
111195925 GAAGATAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (22 bp):
ATTTAATGATATTTTTTAAATT
Found at i:111195960 original size:19 final size:19
Alignment explanation
Indices: 111195921--111195961 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
111195911 TTTATTTTTT
**
111195921 AAATGAAGATAATTATTTA
1 AAATGAAGATAATTAAATA
111195940 AAATGAAGATAATTAAATA
1 AAATGAAGATAATTAAATA
111195959 AAA
1 AAA
111195962 CCATTTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (19 bp):
AAATGAAGATAATTAAATA
Found at i:111196296 original size:17 final size:17
Alignment explanation
Indices: 111196274--111196306 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
111196264 ATTCATTTAT
111196274 GGTTTCAACAAGCTAGC
1 GGTTTCAACAAGCTAGC
*
111196291 GGTTTCAACGAGCTAG
1 GGTTTCAACAAGCTAG
111196307 TAGACGGACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (17 bp):
GGTTTCAACAAGCTAGC
Found at i:111202870 original size:18 final size:19
Alignment explanation
Indices: 111202837--111202872 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
111202827 CAAATGAACT
*
111202837 ATTTCTCATTTTCATTTTC
1 ATTTCTCATTTCCATTTTC
111202856 ATTTC-CATTTCCATTTT
1 ATTTCTCATTTCCATTTT
111202873 TGAGAAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTCTCATTTCCATTTTC
Found at i:111207365 original size:46 final size:44
Alignment explanation
Indices: 111207244--111207390 Score: 136
Period size: 46 Copynumber: 3.2 Consensus size: 44
111207234 CATTGCCATA
* * *
111207244 TCCCAGACATAGTTTTACACTG-ACACATCTCGTAGCCGATGCATG
1 TCCCAGACAT-GTCTTACACTGCACTCGTCTCG-AGCCGATGCATG
* * *
111207289 TCCCAGACATGTCTTACATTGGC-TTACGTCTCGAGGCCGAAGCATG
1 TCCCAGACATGTCTTACACT-GCACT-CGTCTCGA-GCCGATGCATG
* *
111207335 TCCCAGACATGTCTTACACTAGCACTCGTCTCAATGTCGATGCCATG
1 TCCCAGACATGTCTTACACT-GCACTCGTCTCGA-GCCGATG-CATG
111207382 TCCCAGACA
1 TCCCAGACA
111207391 AGGTCTTATA
Statistics
Matches: 83, Mismatches: 13, Indels: 10
0.78 0.12 0.09
Matches are distributed among these distances:
44 8 0.10
45 12 0.14
46 49 0.59
47 14 0.17
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (44 bp):
TCCCAGACATGTCTTACACTGCACTCGTCTCGAGCCGATGCATG
Found at i:111210411 original size:94 final size:94
Alignment explanation
Indices: 111210249--111210624 Score: 680
Period size: 94 Copynumber: 4.0 Consensus size: 94
111210239 AATGTGACCG
* * * *
111210249 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGGGTG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
111210314 GAATTAAATGTCACTTTGTGTGTAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
111210343 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
111210408 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
111210437 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
111210502 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
111210531 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
111210596 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
111210625 GAATGTCGAT
Statistics
Matches: 273, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 273 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:111210629 original size:24 final size:23
Alignment explanation
Indices: 111210580--111210713 Score: 78
Period size: 24 Copynumber: 5.7 Consensus size: 23
111210570 GAGTTAACAT
* *
111210580 TGGCACTATGTGTGCGGAATTAAA
1 TGGCACTATGTGTGCAG-ATTTAA
111210604 TGGCACTATGTGTGCAGATTTGAA
1 TGGCACTATGTGTGCAGATTT-AA
* * * * *
111210628 TGTCGA-TGCATGAGTGAAAATTTCA
1 TGGC-ACT--ATGTGTGCAGATTTAA
*
111210653 -GGCACTATGTGTGC-GGTTTAGTA
1 TGGCACTATGTGTGCAGATTTA--A
*
111210676 TGGCACTATGTGTGCAG-CTTAA
1 TGGCACTATGTGTGCAGATTTAA
*
111210698 TTAGCACTATGTGTGC
1 -TGGCACTATGTGTGC
111210714 GAATTTGGTT
Statistics
Matches: 85, Mismatches: 15, Indels: 21
0.70 0.12 0.17
Matches are distributed among these distances:
21 3 0.04
22 7 0.08
23 19 0.22
24 42 0.49
25 3 0.04
26 11 0.13
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (23 bp):
TGGCACTATGTGTGCAGATTTAA
Found at i:111213599 original size:16 final size:18
Alignment explanation
Indices: 111213572--111213605 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
111213562 TTAGAATTGG
111213572 ATTGAGAAAATT-ATTTA
1 ATTGAGAAAATTAATTTA
111213589 ATTGA-AAAATTAATTTA
1 ATTGAGAAAATTAATTTA
111213606 GTTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
ATTGAGAAAATTAATTTA
Found at i:111213619 original size:4 final size:4
Alignment explanation
Indices: 111213596--111213634 Score: 51
Period size: 4 Copynumber: 9.2 Consensus size: 4
111213586 TTAATTGAAA
*
111213596 AATT AATTT AGTT AATTT AATT AATT AATT AATT AATT A
1 AATT AA-TT AATT AA-TT AATT AATT AATT AATT AATT A
111213635 TATTTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 24 0.77
5 7 0.23
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (4 bp):
AATT
Found at i:111213625 original size:8 final size:9
Alignment explanation
Indices: 111213596--111213639 Score: 56
Period size: 8 Copynumber: 5.0 Consensus size: 9
111213586 TTAATTGAAA
111213596 AATTAATTT
1 AATTAATTT
*
111213605 AGTTAATTT
1 AATTAATTT
111213614 AATTAA-TT
1 AATTAATTT
111213622 AATTAA-TT
1 AATTAATTT
111213630 AATTATATTT
1 AATTA-ATTT
111213640 TTTTTGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
8 15 0.48
9 14 0.45
10 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
AATTAATTT
Found at i:111213639 original size:26 final size:27
Alignment explanation
Indices: 111213583--111213639 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
111213573 TTGAGAAAAT
*
111213583 TATTTAATTGAAAAATTAATTTAGTTA
1 TATTTAATTGAAAAATTAATTTAATTA
*
111213610 -ATTTAATT-AATTAATTAA-TTAATTA
1 TATTTAATTGAA-AAATTAATTTAATTA
111213635 TATTT
1 TATTT
111213640 TTTTTGTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (27 bp):
TATTTAATTGAAAAATTAATTTAATTA
Found at i:111215712 original size:32 final size:32
Alignment explanation
Indices: 111215671--111215735 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
111215661 TCAGAGGAGG
111215671 AATAGACCCTGTCCAAGAGTACATTTATCATA
1 AATAGACCCTGTCCAAGAGTACATTTATCATA
111215703 AATAGACCCTGTCCAAGAGTACATTTATCATA
1 AATAGACCCTGTCCAAGAGTACATTTATCATA
111215735 A
1 A
111215736 TTAAGCGGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (32 bp):
AATAGACCCTGTCCAAGAGTACATTTATCATA
Found at i:111217800 original size:18 final size:20
Alignment explanation
Indices: 111217758--111217794 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
111217748 ATATTTTATG
*
111217758 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
111217777 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
111217795 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:111220007 original size:46 final size:46
Alignment explanation
Indices: 111219950--111220462 Score: 569
Period size: 46 Copynumber: 11.0 Consensus size: 46
111219940 AGTGTGCTCT
111219950 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
111219996 CTGATAAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
111220042 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
111220088 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
111220134 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ***
111220180 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCACATGGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA-A---C
* **
111220230 AGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 --C-TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** *
111220279 ATGACAAAAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*** *** * * *
111220326 AC-GACGGGAAATAAATAAGACAATGGTTGAAAGAGACCATGGCAGC
1 -CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
111220372 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * * *
111220418 ATGACAAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
111220463 TCATGTCAAA
Statistics
Matches: 407, Mismatches: 49, Indels: 21
0.85 0.10 0.04
Matches are distributed among these distances:
46 292 0.72
47 72 0.18
49 1 0.00
50 1 0.00
52 1 0.00
53 40 0.10
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:111220199 original size:138 final size:139
Alignment explanation
Indices: 111219950--111220489 Score: 674
Period size: 138 Copynumber: 3.9 Consensus size: 139
111219940 AGTGTGCTCT
* ** * * *
111219950 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-TAAGAAATGTGTAA
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAAATGTGTAA
* * *** ***
111220014 GACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAAGATAC
66 GACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGATAC
111220079 CATGGCAGC
131 CATGGCAGC
* ** * * * **
111220088 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGA-TATGAAATGTGTAA
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAAATGTGTAA
111220152 GACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGATAC
66 GACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGATAC
111220217 CATGGCACATGGC
131 CATGG--CA--GC
111220230 AGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAAATGTG
1 --C-TGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAAATGTG
* * *
111220295 TAAGACCATGGTTGAAAGATACCATGACAACACGACGGGAAATAAATAAGACAATGGTTGAAAGA
63 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGA
*
111220360 GACCATGGCAGC
128 TACCATGGCAGC
* *
111220372 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAAATGAGTAA
1 CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAAATGTGTAA
* * * * * *
111220437 GACCATAGTTGAAAGACACTATGGCATCATGTC--AAAGATAAATAAGACCATGG
66 GACCATGGTTGAAAGATACCATGGCAACATGACGGGAA-ATAAATAAGACCATGG
111220490 ATGGGAGACG
Statistics
Matches: 360, Mismatches: 33, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
137 2 0.01
138 139 0.39
139 89 0.25
140 2 0.01
142 4 0.01
144 3 0.01
145 44 0.12
146 77 0.21
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.20
Consensus pattern (139 bp):
CTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAAATGTGTAA
GACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGATAC
CATGGCAGC
Found at i:111220301 original size:47 final size:47
Alignment explanation
Indices: 111220241--111220489 Score: 272
Period size: 47 Copynumber: 5.4 Consensus size: 47
111220231 GCGTGACATG
111220241 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
** * * ***
111220288 AAATGTGTAAGACCATGGTTGAAAGATACCATGACAACACGAC-GGG
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
* * * * * **
111220334 AAATAAATAAGACAATGGTTGAAAGAGACCATGGCAGCGTGAC-ATG
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
111220380 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
* * * * * *
111220427 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTC--AA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
* *
111220472 AGATAAATAAGACCATGG
1 AAATGAATAAGACCATGG
111220490 ATGGGAGACG
Statistics
Matches: 166, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
45 16 0.10
46 73 0.44
47 77 0.46
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (47 bp):
AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
Found at i:111223162 original size:18 final size:20
Alignment explanation
Indices: 111223120--111223156 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
111223110 ATATTTTATG
*
111223120 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
111223139 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
111223157 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Done.