Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 370 of 425
Found at i:114114772 original size:42 final size:42
Alignment explanation
Indices: 114114713--114114792 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
114114703 CTCACGCGGA
*
114114713 CGTGTGTTTTGAACACACGGCAGTGTCTGGTGGGCACACGGG
1 CGTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGGG
* * *
114114755 CGTGTGTTTTGGACACACAGCCGTGTTTGGTGGGCACA
1 CGTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACA
114114793 TGAGAGTGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.16, C:0.21, G:0.36, T:0.26
Consensus pattern (42 bp):
CGTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGGG
Found at i:114114802 original size:42 final size:42
Alignment explanation
Indices: 114114714--114114802 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
114114704 TCACGCGGAC
* * *
114114714 GTGTGTTTTGAACACACGGCAGTGTCTGGTGGGCACACGGGC
1 GTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGAGA
* * * *
114114756 GTGTGTTTTGGACACACAGCCGTGTTTGGTGGGCACATGAGA
1 GTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGAGA
114114798 GTGTG
1 GTGTG
114114803 AGTCCCTCAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.17, C:0.18, G:0.38, T:0.27
Consensus pattern (42 bp):
GTGTGTTTTGAACACACAGCAGTGTCTGGTGGGCACACGAGA
Found at i:114119686 original size:20 final size:19
Alignment explanation
Indices: 114119661--114119713 Score: 52
Period size: 22 Copynumber: 2.6 Consensus size: 19
114119651 TCATTAAATA
*
114119661 ATTTCCATAATGGATGTTTT
1 ATTTCCATAATAG-TGTTTT
114119681 ATTTCCTTAGTAATAGTGTTTT
1 ATTTCC--A-TAATAGTGTTTT
*
114119703 ATTTCAATAAT
1 ATTTCCATAAT
114119714 TTCACCTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
19 4 0.14
20 7 0.25
22 12 0.43
23 5 0.18
ACGTcount: A:0.28, C:0.09, G:0.11, T:0.51
Consensus pattern (19 bp):
ATTTCCATAATAGTGTTTT
Found at i:114120251 original size:21 final size:23
Alignment explanation
Indices: 114120220--114120262 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
114120210 ATCCTCCTGG
114120220 CGCCACGCACC-CCCCGTACACA
1 CGCCACGCACCACCCCGTACACA
*
114120242 CGCCA-GCACCACCCTGTACAC
1 CGCCACGCACCACCCCGTACAC
114120263 CTCGCGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.23, C:0.56, G:0.14, T:0.07
Consensus pattern (23 bp):
CGCCACGCACCACCCCGTACACA
Found at i:114121381 original size:2 final size:2
Alignment explanation
Indices: 114121374--114121414 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
114121364 TAGTTTCATT
*
114121374 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
114121415 ACAATGTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:114122599 original size:130 final size:130
Alignment explanation
Indices: 114122221--114122701 Score: 491
Period size: 130 Copynumber: 3.7 Consensus size: 130
114122211 AAAATTCTTC
* *
114122221 AAAACGAAGACGAAATTTGATGTTCGACAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * *
114122286 TTTCGCATTTGCTCAAAATAATCGAATTTCCCTTCGAAATTTCATTCATATCTTTTAAAATCCCT
66 TTTCGCATTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTCTTTTAAAATCCCT
* * * * * *
114122351 TAAACGAATATGAGATTTGATGTTTGGCAATTCGCGGAACCGTGCCCTAACATGTTGGGTTGCAA
1 AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * * *
114122416 TTTCGCATTTGCTCAAAATAATTGAATATCACTTTAAAATTTCGTTCATGTCTTTTAAAATCCCT
66 TTTCGCATTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTCTTTTAAAATCCCT
* * * * * *
114122481 AAAACGAAGGCGATATGTGATATTTGGCAATTCGCGGGATCGTGCCCTAACGTGTTGGGTAGCAA
1 AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * * * * * ** *
114122546 TTTCCCGA-TAGTTTAAAATAATCAAATATCCCTTCAAAATTTCACTCGGGTCTTCTAAAAATCC
66 TTTCGC-ATTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTCTT-TTAAAATCC
*
114122610 TTT
129 -CT
* * * * * * * * * * **
114122613 AAAATGAAGGC-AATACTCGGTGTTTGACAATTCG-GGAATCATGCCTTATCGTGCTGGGTTGTG
1 AAAACGAAGACGAA-ATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCA
* * *
114122676 ATTTCTCATTTGTTCAAAACAATCGA
65 ATTTCGCATTTGCTCAAAATAATCGA
114122702 GTATTCATTT
Statistics
Matches: 285, Mismatches: 61, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
130 210 0.74
131 50 0.18
132 25 0.09
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (130 bp):
AAAACGAAGACGAAATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAA
TTTCGCATTTGCTCAAAATAATCGAATATCCCTTCAAAATTTCATTCATGTCTTTTAAAATCCCT
Found at i:114124748 original size:2 final size:2
Alignment explanation
Indices: 114124737--114124781 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
114124727 TGCTTGTGAA
114124737 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114124778 AT AT
1 AT AT
114124782 TACGAATGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:114134111 original size:12 final size:12
Alignment explanation
Indices: 114134096--114134145 Score: 73
Period size: 12 Copynumber: 4.2 Consensus size: 12
114134086 TTTCATTTCA
*
114134096 TCCTCATCTTCC
1 TCCTCCTCTTCC
114134108 TCCTCCTCTTCC
1 TCCTCCTCTTCC
*
114134120 TCCTCCTCCTCC
1 TCCTCCTCTTCC
*
114134132 TCCTCCTCCTCC
1 TCCTCCTCTTCC
114134144 TC
1 TC
114134146 TTCTTGTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.02, C:0.60, G:0.00, T:0.38
Consensus pattern (12 bp):
TCCTCCTCTTCC
Found at i:114134113 original size:3 final size:3
Alignment explanation
Indices: 114134105--114134145 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
114134095 ATCCTCATCT
*
114134105 TCC TCC TCC TCT TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
114134146 TTCTTGTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (3 bp):
TCC
Found at i:114143722 original size:43 final size:44
Alignment explanation
Indices: 114143675--114143778 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 44
114143665 ATTAATTAAA
* * *
114143675 AATTAAATTAAAATAGAAGTTGTGATAATTATACATT-TAAAAT
1 AATTAAATTAAAATAAAAGTTGTGATAATTACACATTAAAAAAT
114143718 AATTATAATGT--AATAAAAGTTGTGATAATTACACATTAAAAAAT
1 AATTA-AAT-TAAAATAAAAGTTGTGATAATTACACATTAAAAAAT
114143762 AATTAAAATTTAAAATA
1 AATT-AAA-TTAAAATA
114143779 CAATTATTAA
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
43 29 0.57
44 15 0.29
45 3 0.06
46 4 0.08
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (44 bp):
AATTAAATTAAAATAAAAGTTGTGATAATTACACATTAAAAAAT
Found at i:114151754 original size:26 final size:26
Alignment explanation
Indices: 114151724--114151797 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
114151714 TATATTAATA
* * *
114151724 AAATATATATTACT-TAATATTTAAGT
1 AAATATATA-TAATATAATAATAAAGT
114151750 AAATATATATAATATAATAATAAAGT
1 AAATATATATAATATAATAATAAAGT
114151776 AAATATA-A-AATA-AATAAGTAAA
1 AAATATATATAATATAATAA-TAAA
114151798 TGAAATAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
23 5 0.12
24 8 0.19
25 4 0.09
26 26 0.60
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (26 bp):
AAATATATATAATATAATAATAAAGT
Found at i:114151820 original size:17 final size:18
Alignment explanation
Indices: 114151768--114151821 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 18
114151758 ATAATATAAT
114151768 AATAAAGTAAATATAAAATA
1 AATAAAGTAAA-A-AAAATA
**
114151788 AAT-AAGTAAATGAAATA
1 AATAAAGTAAAAAAAATA
114151805 AATAAAG-AAAAAAAATA
1 AATAAAGTAAAAAAAATA
114151822 GAAATAGAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 16 0.55
18 3 0.10
19 7 0.24
20 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.20
Consensus pattern (18 bp):
AATAAAGTAAAAAAAATA
Found at i:114151965 original size:61 final size:61
Alignment explanation
Indices: 114151900--114152024 Score: 205
Period size: 61 Copynumber: 2.0 Consensus size: 61
114151890 AGATATATTT
* * *
114151900 GAAGTCATATTAGAATTCTCGACTAAAAAGATAAAAGATAAAGTTGACGAGGAATAGCTCG
1 GAAGTCATATTAGAATTCTCGACTAAAAAGACAAAAGATAAAGTCGACGAGGAATACCTCG
* *
114151961 GAAGTTATATTAGAATTCTCGACTAAAAAGGCAAAAGATAAAGTCGACGAGGAATACCTCG
1 GAAGTCATATTAGAATTCTCGACTAAAAAGACAAAAGATAAAGTCGACGAGGAATACCTCG
114152022 GAA
1 GAA
114152025 TTTCCAGTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.22
Consensus pattern (61 bp):
GAAGTCATATTAGAATTCTCGACTAAAAAGACAAAAGATAAAGTCGACGAGGAATACCTCG
Found at i:114152381 original size:37 final size:37
Alignment explanation
Indices: 114152340--114152433 Score: 170
Period size: 37 Copynumber: 2.5 Consensus size: 37
114152330 ACTTTGAGTT
*
114152340 GATGAGACACTGGGTGTCAATTTACTTCGGTTTAGCC
1 GATGAGACACTGGGTGCCAATTTACTTCGGTTTAGCC
114152377 GATGAGACACTGGGTGCCAATTTACTTCGGTTTAGCC
1 GATGAGACACTGGGTGCCAATTTACTTCGGTTTAGCC
*
114152414 GATGAGACACTAGGTGCCAA
1 GATGAGACACTGGGTGCCAA
114152434 ACTGGTGTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (37 bp):
GATGAGACACTGGGTGCCAATTTACTTCGGTTTAGCC
Found at i:114152670 original size:16 final size:17
Alignment explanation
Indices: 114152619--114152689 Score: 69
Period size: 16 Copynumber: 4.4 Consensus size: 17
114152609 TTATATACTC
*
114152619 ATGAATTGA-GTATGGT
1 ATGAATTGATGTATTGT
* *
114152635 ATGAAATGATGTATT-C
1 ATGAATTGATGTATTGT
114152651 ATGAATTGA-GTATTGT
1 ATGAATTGATGTATTGT
114152667 ATG-ATTGATGTCATTGT
1 ATGAATTGATGT-ATTGT
*
114152684 ACGAAT
1 ATGAAT
114152690 AAATATGGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
15 10 0.23
16 21 0.48
17 11 0.25
18 2 0.05
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.39
Consensus pattern (17 bp):
ATGAATTGATGTATTGT
Found at i:114155388 original size:25 final size:25
Alignment explanation
Indices: 114155333--114155388 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
114155323 TTTAATATTA
114155333 ATAA-TTTATTATTAAAATTTTAAAT
1 ATAATTTTATTATTAAAA-TTTAAAT
114155358 AT-ATTTTATTATTAAAA-TTAAAT
1 ATAATTTTATTATTAAAATTTAAAT
114155381 CATAATTT
1 -ATAATTT
114155389 ATAAGTGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
23 6 0.21
24 3 0.11
25 19 0.68
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
ATAATTTTATTATTAAAATTTAAAT
Found at i:114161484 original size:51 final size:49
Alignment explanation
Indices: 114161363--114161601 Score: 300
Period size: 49 Copynumber: 4.8 Consensus size: 49
114161353 TATTGTGAGT
* * *
114161363 TCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGG
* * *
114161412 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CAGATAA-TT-GG
* * **
114161463 TCACGTGTGTAGTACTGAGTGCAGGCTACTATGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GG
* * *
114161513 TCACGTGTGTATTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGG
* *
114161562 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
114161602 AATAGCTTTG
Statistics
Matches: 161, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
49 76 0.47
50 47 0.29
51 38 0.24
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGG
Found at i:114164849 original size:17 final size:15
Alignment explanation
Indices: 114164810--114164850 Score: 66
Period size: 14 Copynumber: 2.8 Consensus size: 15
114164800 ATAATTCATA
114164810 AATATATTATTTATT
1 AATATATTATTTATT
*
114164825 AATATATTA-TAATT
1 AATATATTATTTATT
114164839 AATATATTATTT
1 AATATATTATTT
114164851 TTTGGTTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
AATATATTATTTATT
Found at i:114165003 original size:32 final size:32
Alignment explanation
Indices: 114164967--114165031 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
114164957 TTTAGATAAA
*
114164967 AAATGAATCTAAACAGA-TGGTTATCTAAATTC
1 AAATGAATCTAAACA-ACTAGTTATCTAAATTC
* * *
114164999 AAATGCATTTAAACAACTATTTATCTAAATTC
1 AAATGAATCTAAACAACTAGTTATCTAAATTC
114165031 A
1 A
114165032 TTATAAGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.34
Consensus pattern (32 bp):
AAATGAATCTAAACAACTAGTTATCTAAATTC
Found at i:114173018 original size:22 final size:22
Alignment explanation
Indices: 114172994--114173035 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
114172984 GCAACCCAAT
114172994 TTTTAT-TT-TTATTTTTATTTA
1 TTTTATCTTATTA-TTTTATTTA
114173015 TTTTATCTTATTATTTTATTT
1 TTTTATCTTATTATTTTATTT
114173036 TATTCAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 10 0.53
23 3 0.16
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTATCTTATTATTTTATTTA
Found at i:114174544 original size:15 final size:15
Alignment explanation
Indices: 114174524--114174553 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
114174514 CATTTTATTT
*
114174524 ATATTAGGATAATTA
1 ATATTAAGATAATTA
114174539 ATATTAAGATAATTA
1 ATATTAAGATAATTA
114174554 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:114174581 original size:27 final size:26
Alignment explanation
Indices: 114174520--114174582 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
114174510 ACTCCATTTT
114174520 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * *
114174547 ATAATTATTAGGATTATTTAATTTTAAG
1 AT-TTTATTAGGA-TAATTAATATTAAG
114174575 ATTTTATT
1 ATTTTATT
114174583 TTAATTATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 15 0.50
28 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:114186290 original size:14 final size:12
Alignment explanation
Indices: 114186259--114186292 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
114186249 GTTTAAAAAG
114186259 TTTTATTTATTA
1 TTTTATTTATTA
114186271 TTTTATGTTATTA
1 TTTTAT-TTATTA
114186284 CTTTTATTT
1 -TTTTATTT
114186293 TATTTTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.30
13 8 0.40
14 6 0.30
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTATTTATTA
Found at i:114186295 original size:14 final size:13
Alignment explanation
Indices: 114186259--114186296 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
114186249 GTTTAAAAAG
114186259 TTTTA-TTTATTA
1 TTTTATTTTATTA
*
114186271 TTTTATGTTATTA
1 TTTTATTTTATTA
114186284 CTTTTATTTTATT
1 -TTTTATTTTATT
114186297 TTAAGACTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 5 0.23
13 6 0.27
14 11 0.50
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:114194750 original size:20 final size:19
Alignment explanation
Indices: 114194697--114194752 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
114194687 GGCCCGTTAG
*
114194697 AAAAAAAAACC-AGAAATT
1 AAAAAAAAACCAATAAATT
**
114194715 AAAAAAACAAAAAATAAATT
1 AAAAAAA-AACCAATAAATT
114194735 AAAATAAAAACCAATAAA
1 AAAA-AAAAACCAATAAA
114194753 AGTTCATCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 7 0.23
19 2 0.07
20 18 0.60
21 3 0.10
ACGTcount: A:0.77, C:0.09, G:0.02, T:0.12
Consensus pattern (19 bp):
AAAAAAAAACCAATAAATT
Found at i:114196200 original size:14 final size:14
Alignment explanation
Indices: 114196183--114196211 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
114196173 TTATATATAT
114196183 ATAATTCATGATAA
1 ATAATTCATGATAA
114196197 ATAATTCATGATAA
1 ATAATTCATGATAA
114196211 A
1 A
114196212 GTTAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (14 bp):
ATAATTCATGATAA
Found at i:114205064 original size:44 final size:44
Alignment explanation
Indices: 114204979--114205433 Score: 341
Period size: 44 Copynumber: 10.1 Consensus size: 44
114204969 TTGAATATAG
* * * *
114204979 CAAATTTTATCT-CTTGAAGATGCAGTGGAGC-GAAATAAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAAGCTA
* * * * * * *
114205022 AAAATCTCATATCCCTGAAGTTGTAGTAGATCGGATTAAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
*
114205066 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-CAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCTA
* * *
114205110 CAAATCTTATCTCCTTGAAGTTGTAGTGGAGTAGATTAAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
*
114205154 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* *
114205198 CAAATCTTATCTCGCTGAAGTTGCAGTGGAGTAGATTGAAA--TGA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCT-A
* * * * * * *
114205242 CAAATCATATATCACTGAAATTGCAATGG-GTCAAATTAAATCTACCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTAAAGCT---A
* * *
114205289 CAGCGAATCTTATTTCCCTGAAGTTGCAGTGAAACAGATTAAAGCTACAAGTTA
1 CA---AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG---C----TA
* * *
114205343 CAAATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * * * * *
114205387 CGAATCTCATCTACTTGAAGTTACAGCGGAGTC-GATTGAAA-CTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATT-AAAGCTA
114205431 CAA
1 CAA
114205434 TTCCTATACC
Statistics
Matches: 330, Mismatches: 58, Indels: 47
0.76 0.13 0.11
Matches are distributed among these distances:
43 16 0.05
44 233 0.71
45 10 0.03
47 3 0.01
48 1 0.00
50 29 0.09
51 33 0.10
53 1 0.00
54 3 0.01
57 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
Found at i:114205196 original size:132 final size:132
Alignment explanation
Indices: 114204979--114205433 Score: 389
Period size: 132 Copynumber: 3.4 Consensus size: 132
114204969 TTGAATATAG
* * * * * *
114204979 CAAATTTTATCT-CTTGAAGATGCAGTGGAG-CGAAATAAAGCTAAAAATCTCATATCCCTGAAG
1 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAG-ATTAAAGCTACAAATCTTATATCCCTGAAG
* * * * *
114205042 TTGTAGTAGATCGGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA
65 TTGCAGTGGAACAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA
114205107 CAA
130 CAA
* *
114205110 CAAATCTTATCTCCTTGAAGTTGTAGTGGAGTAGATTAAAGCTACAAATCTTATCTCCCTGAAGT
1 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTAAAGCTACAAATCTTATATCCCTGAAGT
* * * *
114205175 TGCAGTGGAGCAGATTGAAGCTACAAATCTTATCTCGCTGAAGTTGCAGTGGAGTAGATTGAAAT
66 TGCAGTGGAACAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAC
*
114205240 GA
131 AA
* * * * * * *
114205242 CAAATCATATATCAC-TGAAATTGCAATGG-GTCAAATTAAATCTACCACAGCGAATCTTATTTC
1 CAAATCTTATCTC-CTTGAAGTTGCAGTGGAGT-AGATTAAAGCT---ACA---AATCTTATATC
* * * *
114205305 CCTGAAGTTGCAGTGAAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCTTGAAGTTACAGT
58 CCTGAAGTTGCAGTGGAACAGATT---G----AAGCTACAAATCTTATCTCCCTGAAGTTGCAGT
* *
114205370 GGAGCAGATTGAAGCTA
116 GGAGCAGATTGAAACAA
* * * * * *
114205387 CGAATCTCATCTACTTGAAGTTACAGCGGAGTCGATTGAAA-CTACAA
1 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATT-AAAGCTACAA
114205434 TTCCTATACC
Statistics
Matches: 258, Mismatches: 46, Indels: 32
0.77 0.14 0.10
Matches are distributed among these distances:
131 13 0.05
132 132 0.51
133 2 0.01
135 3 0.01
138 32 0.12
139 1 0.00
141 1 0.00
142 3 0.01
144 1 0.00
145 65 0.25
146 5 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (132 bp):
CAAATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATTAAAGCTACAAATCTTATATCCCTGAAGT
TGCAGTGGAACAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAC
AA
Found at i:114212577 original size:20 final size:18
Alignment explanation
Indices: 114212535--114212589 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 18
114212525 TTTATTTGTC
**
114212535 AAAATTAT-AAATTTATT
1 AAAATTATAAAATTTAAA
114212552 AAAATTATCAAAATGTTAAA
1 AAAATTAT-AAAAT-TTAAA
114212572 AAAATTATAAAATTTAAA
1 AAAATTATAAAATTTAAA
114212590 CTATCAAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 8 0.24
18 5 0.15
19 9 0.27
20 11 0.33
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
AAAATTATAAAATTTAAA
Found at i:114212583 original size:8 final size:8
Alignment explanation
Indices: 114212535--114212623 Score: 56
Period size: 8 Copynumber: 10.6 Consensus size: 8
114212525 TTTATTTGTC
114212535 AAAATTAT
1 AAAATTAT
*
114212543 AAATTTATT
1 AAAATTA-T
114212552 AAAATTAT
1 AAAATTAT
*
114212560 CAAAATGTTAAA
1 -AAAA--TT-AT
114212572 AAAATTAT
1 AAAATTAT
114212580 AAAATT-T
1 AAAATTAT
*
114212587 -AAACTAT
1 AAAATTAT
*
114212594 CAAACTTAT
1 -AAAATTAT
*
114212603 AAAATTAG
1 AAAATTAT
*
114212611 AAAATAAT
1 AAAATTAT
114212619 AAAAT
1 AAAAT
114212624 ATTTAATTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
6 4 0.06
7 2 0.03
8 31 0.50
9 18 0.29
11 6 0.10
12 1 0.02
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (8 bp):
AAAATTAT
Found at i:114219189 original size:27 final size:27
Alignment explanation
Indices: 114219136--114219191 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
114219126 GTAATATTTT
*
114219136 TTTAAGGAAATAATTTTTAATTGTTAA
1 TTTAAGGAAATAATTTTTAATTATTAA
114219163 TTTAAGGAAATAAATTATTT-A-TATTAA
1 TTTAAGGAAAT-AATT-TTTAATTATTAA
114219190 TT
1 TT
114219192 GTTAATGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 18 0.69
28 5 0.19
29 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (27 bp):
TTTAAGGAAATAATTTTTAATTATTAA
Found at i:114220087 original size:13 final size:13
Alignment explanation
Indices: 114220069--114220103 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
114220059 ATTATGTACT
114220069 AAAATAATATAAA
1 AAAATAATATAAA
* *
114220082 AAAATAAAATACA
1 AAAATAATATAAA
114220095 AAAATAATA
1 AAAATAATA
114220104 AATTTTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATAATATAAA
Found at i:114220379 original size:144 final size:141
Alignment explanation
Indices: 114219557--114220853 Score: 1760
Period size: 145 Copynumber: 9.1 Consensus size: 141
114219547 TATATTTTAA
* *
114219557 AAAATCCGAAAATAAAATAAAAAAAGGCCAAAATTAGAGTTTTTTACTAAATTAATATAAATATA
1 AAAATCCGAAAATAAAATAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA-AAA
114219622 CTAAAATAATACATGTGAAACATTATGTACTAAAAT-A-ATAAAAAATAAAATACGAAAATAGTA
65 CTAAAATAATACAT-TGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTA
*
114219685 TATTTTGAAAAAT
129 TATTTTAAAAAAT
*
114219698 AAAATCCGAAAATAAAATAAAAAATAAACGGCCAAAATCAGAATTTTTTACTAAATTAATATAAA
1 AAAATCCGAAAATAAAAT--AAAA-AAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AA
*
114219763 AAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT---AAA-AAAATACAAAAAT
61 AAAACTAAAATAATACA-TTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAAT
114219824 AGTATATTTTAAAAAAT
125 AGTATATTTTAAAAAAT
* * *
114219841 AAAATCCAAAAACAAAATAAAAAAA-GCCAAAATCACA-TATTTTTACTAAATTAATATAAAAAA
1 AAAATCCGAAAATAAAATAAAAAAAGGCCAAAATCAGAGT-TTTTTACTAAATTAATATAAAAAA
*
114219904 CTAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAAAACAAAATACG---A-A-TAT
65 CTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTAT
*
114219963 ATCTTAAAAAAT
130 ATTTTAAAAAAT
* * **
114219975 AAAATCAGAAAATAAAA-ATAAAAAGGGCCAAAATCAGAGTTTTTTTTTTAAATTAATATAAAAA
1 AAAATCCGAAAATAAAATA-AAAAAAGGCCAAAATCAGAG-TTTTTTACTAAATTAATATAAAAA
* *
114220039 ACTAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACAAAAATAAT
64 ACTAAAATAATACATTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAATAGT
*
114220103 AAATTTTAAAAAAT
128 ATATTTTAAAAAAT
* * *
114220117 AAAATCTGAAAATAAAA-ATAAAAAATGCCAAAATCAGAGTTTTTTTCTAAATTAATATAAAAAA
1 AAAATCCGAAAATAAAATA-AAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAA
* *
114220181 CTAAAATAATACATCTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATACCAAAAGAGT
65 CTAAAATAATACAT-TGAAACATTATGTACTAAAATAATATAAAA-AATAAAATACGAAAATAGT
114220246 ATATTTTAAAAAAT
128 ATATTTTAAAAAAT
* * * *
114220260 AAAATCTGAAAACAAAATAAATAAAACGGCCAAAATCACAGATTTTTACTAAATTAATATAAAAA
1 AAAATCCGAAAATAAAATAAA-AAAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATAT--AAA
*
114220325 AAACTAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAAAATAAAATATGAAAATAG
62 AAACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAG
114220389 TATATTTT-AAAAA-
127 TATATTTTAAAAAAT
* *
114220402 AAAATCCAAAAATAAAA-AATAAAAAGGGCC-AAATCAGAGTTTTTTTTCTAAATTAATATAAAA
1 AAAATCCGAAAATAAAATAA-AAAAA-GGCCAAAATCAGAG-TTTTTTACTAAATTAATATAAAA
*
114220465 AATTAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGT
63 AACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGT
*
114220529 ATATATTAAAAAAT
128 ATATTTTAAAAAAT
*
114220543 AAAATCCGAAAATAAAATAAAAAATAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATATAAA
1 AAAATCCGAAAATAAAAT--AAAA-AAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA
* *
114220608 AAACTAAAATAATACATTTGGAATATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATA
62 AAACTAAAATAATACA-TTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATA
*
114220673 GTATATTTTAAAAAGT
126 GTATATTTTAAAAAAT
* * * *
114220689 AAAATCCAAAAATAAAATAAAAAAAGGTCAAAATCGGAGTTTTTTATTAAATTAATATAAAAAAA
1 AAAATCCGAAAATAAAATAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATAT--AAAAA
* * *
114220754 TACAAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAATAAAAAACGAAAATAA
64 -ACTAAAATAATACA-TTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAG
*
114220818 TATATTTTAGAAAAT
127 TATATTTTAAAAAAT
114220833 AAAATCCGAAAATAAAATAAA
1 AAAATCCGAAAATAAAATAAA
114220854 TACCAAAATA
Statistics
Matches: 1044, Mismatches: 67, Indels: 87
0.87 0.06 0.07
Matches are distributed among these distances:
133 1 0.00
134 33 0.03
135 38 0.04
136 62 0.06
137 34 0.03
138 32 0.03
139 79 0.08
140 17 0.02
141 103 0.10
142 99 0.09
143 131 0.13
144 139 0.13
145 174 0.17
146 81 0.08
147 21 0.02
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (141 bp):
AAAATCCGAAAATAAAATAAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAC
TAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
TTTTAAAAAAT
Found at i:114220531 original size:25 final size:25
Alignment explanation
Indices: 114220496--114220570 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 25
114220486 ATTATGTACT
114220496 AAAATAATATAAAAAATAAAATACG
1 AAAATAATATAAAAAATAAAATACG
*
114220521 AAAATAGTATATATTAAAAAATAAAATCCG
1 -AAA-A-TA-ATA-TAAAAAATAAAATACG
*
114220551 AAAATAAAATAAAAAATAAA
1 AAAATAATATAAAAAATAAA
114220571 CGGCCAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
25 11 0.26
26 5 0.12
27 3 0.07
28 3 0.07
29 6 0.14
30 15 0.35
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.21
Consensus pattern (25 bp):
AAAATAATATAAAAAATAAAATACG
Found at i:114220638 original size:285 final size:285
Alignment explanation
Indices: 114219542--114220853 Score: 1790
Period size: 285 Copynumber: 4.6 Consensus size: 285
114219532 AGAATAGCTT
* *
114219542 AATAGTATATTTT---AA-AAAATCCGAAAATAAAATAAAAAAAGGCCAAAATTAGAG-TTTTTT
1 AATAGTATATTTTAAAAATAAAATCCAAAAATAAAATAAAAAAAGGCCAAAATCAGAGTTTTTTT
* *
114219602 ACTAAATTAATATAAATATACTAAAATAATACATGTGAAACATTATGTACTAAAAT-A-ATAAAA
66 TCTAAATTAATATAAA-AAACTAAAATAATACAT-TGAAACATTATGTACTAAAATAATATAAAA
*
114219665 AATAAAATACGAAAATAGTATATTTTGAAAAATAAAATCCGAAAATAAAATAAAAAATAAACGGC
129 AATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAA-AAACGGC
*
114219730 CAAAATCAGAATTTTTTACTAAATTAATATAAAAAAACTAAAATAATACATTTGAAACATTATGT
193 CAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAAATAATACA--TGAAACATTATGT
114219795 ACTAAAATAATAT---AAA-AAAATACAAA
256 ACTAAAATAATATAAAAAATAAAATACAAA
* * *
114219821 AATAGTATATTTTAAAAAATAAAATCCAAAAACAAAATAAAAAAA-GCCAAAATCACA-TATTTT
1 AATAGTATATTTT-AAAAATAAAATCCAAAAATAAAATAAAAAAAGGCCAAAATCAGAGTTTTTT
*
114219884 TACTAAATTAATATAAAAAACTAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAAA
65 TTCTAAATTAATATAAAAAACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAA
* * * * *
114219948 ACAAAATACG---A-A-TATATCTTAAAAAATAAAATCAGAAAAT--AA-AAATAAAAAGGGCCA
130 ATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAACGGCCA
**
114220005 AAATCAGAGTTTTTTTTTTAAATTAATAT-AAAAAACTAAAATAATACATGAAACATTATGTACT
195 AAATCAGAG-TTTTTTACTAAATTAATATAAAAAAACTAAAATAATACATGAAACATTATGTACT
114220069 AAAATAATATAAAAAAATAAAATACAAA
259 AAAATAATAT-AAAAAATAAAATACAAA
* * ** *
114220097 AATAATAAATTTTAAAAAATAAAATCTGAAAATAAAA-ATAAAAAATGCCAAAATCAGAG-TTTT
1 AATAGTATATTTT-AAAAATAAAATCCAAAAATAAAATA-AAAAAAGGCCAAAATCAGAGTTTTT
114220160 TTTCTAAATTAATATAAAAAACTAAAATAATACATCTGAAACATTATGTACTAAAATAATATAAA
64 TTTCTAAATTAATATAAAAAACTAAAATAATACAT-TGAAACATTATGTACTAAAATAATATAAA
* * * * *
114220225 AGAATAAAATACCAAAAGAGTATATTTTAAAAAATAAAATCTGAAAACAAAAT-AAATAAAACGG
128 A-AATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAACGG
* *
114220289 CCAAAATCACAGATTTTTACTAAATTAATATAAAAAAAACTAAAATAATACATGAAACATTATGT
192 CCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAAAAACTAAAATAATACATGAAACATTATGT
**
114220354 ACTAAAATAATATAAAAAATAAAATATGAA
256 ACTAAAATAATATAAAAAATAAAATACAAA
114220384 AATAGTATATTTTAAAAA-AAAATCCAAAAATAAAA-AATAAAAAGGGCC-AAATCAGAGTTTTT
1 AATAGTATATTTTAAAAATAAAATCCAAAAATAAAATAA-AAAAA-GGCCAAAATCAGAGTTTTT
*
114220446 TTTCTAAATTAATATAAAAAATTAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAA
64 TTTCTAAATTAATATAAAAAACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAA
*
114220510 AATAAAATACGAAAATAGTATATATTAAAAAATAAAATCCGAAAATAAAATAAAAAATAAACGGC
129 AATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAA-AAACGGC
* * *
114220575 CAAAATCAGAGTTTTTTATTAAATTAATAT-AAAAAACTAAAATAATACATTTGGAATATTATGT
193 CAAAATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAAATAATACA--TGAAACATTATGT
*
114220639 ACTAAAATAATATAAAAAATAAAATACGAA
256 ACTAAAATAATATAAAAAATAAAATACAAA
* *
114220669 AATAGTATATTTTAAAAAGTAAAATCCAAAAATAAAATAAAAAAAGGTCAAAATCGGAGTTTTTT
1 AATAGTATATTTTAAAAA-TAAAATCCAAAAATAAAATAAAAAAAGGCCAAAATCAGAGTTTTTT
* *
114220734 AT-TAAATTAATATAAAAAAATACAAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-
65 TTCTAAATTAATAT--AAAAA-ACTAAAATAATACA-TTGAAACATTATGTACTAAAATAATATA
* * *
114220797 AAAAATAAAAAACGAAAATAATATATTTTAGAAAATAAAATCCGAAAATAAAATAAA
126 AAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAA
114220854 TACCAAAATA
Statistics
Matches: 923, Mismatches: 64, Indels: 81
0.86 0.06 0.08
Matches are distributed among these distances:
271 26 0.03
273 35 0.04
274 22 0.02
275 6 0.01
276 48 0.05
277 72 0.08
278 1 0.00
279 44 0.05
280 30 0.03
281 1 0.00
282 31 0.03
283 99 0.11
284 59 0.06
285 147 0.16
286 75 0.08
287 84 0.09
288 52 0.06
289 12 0.01
290 53 0.06
291 26 0.03
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (285 bp):
AATAGTATATTTTAAAAATAAAATCCAAAAATAAAATAAAAAAAGGCCAAAATCAGAGTTTTTTT
TCTAAATTAATATAAAAAACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAA
TAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAACGGCCAA
AATCAGAGTTTTTTACTAAATTAATATAAAAAAACTAAAATAATACATGAAACATTATGTACTAA
AATAATATAAAAAATAAAATACAAA
Found at i:114227252 original size:78 final size:78
Alignment explanation
Indices: 114227155--114227311 Score: 296
Period size: 78 Copynumber: 2.0 Consensus size: 78
114227145 TAACACTAAA
*
114227155 CAAACTATATAATATTAACAAAATAATTTTTTCTTATCATAATCTATTTTATTTAAAAAATAACA
1 CAAACTATATAATACTAACAAAATAATTTTTTCTTATCATAATCTATTTTATTTAAAAAATAACA
114227220 ACAAAAAAATTAC
66 ACAAAAAAATTAC
114227233 CAAACTATATAATACTAACAAAATAATTTTTTCTTATCATAATCTATTTTATTTAAAAAATAACA
1 CAAACTATATAATACTAACAAAATAATTTTTTCTTATCATAATCTATTTTATTTAAAAAATAACA
*
114227298 ACAAATAAATTAC
66 ACAAAAAAATTAC
114227311 C
1 C
114227312 TTTTCTTTTC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (78 bp):
CAAACTATATAATACTAACAAAATAATTTTTTCTTATCATAATCTATTTTATTTAAAAAATAACA
ACAAAAAAATTAC
Found at i:114227339 original size:22 final size:22
Alignment explanation
Indices: 114227313--114227354 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
114227303 TAAATTACCT
114227313 TTTCTTTTCTTTCT-TCTTCTCC
1 TTTC-TTTCTTTCTATCTTCTCC
114227335 TTTCTTTCTTTCTATCTTCT
1 TTTCTTTCTTTCTATCTTCT
114227355 TCTTCTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCTTTCTTTCTATCTTCTCC
Found at i:114230903 original size:43 final size:43
Alignment explanation
Indices: 114230842--114230925 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
114230832 CTCAACTTCT
* *
114230842 AAATTAACCTGAACGACAACGTTTCCTAACTTTGACTAATTTA
1 AAATTAACCTAAACGACAACGTTTCCTAACTTAGACTAATTTA
*
114230885 AAATTAACCTAAACGACAACGTTTCGTAACTTAGACTAATT
1 AAATTAACCTAAACGACAACGTTTCCTAACTTAGACTAATT
114230926 GACTTGGAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (43 bp):
AAATTAACCTAAACGACAACGTTTCCTAACTTAGACTAATTTA
Found at i:114231234 original size:16 final size:17
Alignment explanation
Indices: 114231203--114231236 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
114231193 TCTCCACCCA
*
114231203 CCTCAACTCTCCTCCTC
1 CCTCAAATCTCCTCCTC
114231220 CCTCAAATC-CCTCCTC
1 CCTCAAATCTCCTCCTC
114231236 C
1 C
114231237 TTTCCCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.15, C:0.59, G:0.00, T:0.26
Consensus pattern (17 bp):
CCTCAAATCTCCTCCTC
Found at i:114234997 original size:92 final size:92
Alignment explanation
Indices: 114234863--114235046 Score: 359
Period size: 92 Copynumber: 2.0 Consensus size: 92
114234853 AGAGGGTATC
114234863 ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
1 ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
114234928 TCCAGTGTAAGAAGTAATTCACCTATG
66 TCCAGTGTAAGAAGTAATTCACCTATG
114234955 ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
1 ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
*
114235020 TCCAGTTTAAGAAGTAATTCACCTATG
66 TCCAGTGTAAGAAGTAATTCACCTATG
114235047 TTACAGAGCT
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (92 bp):
ATAGAAAATGATGTTAGGTAAGCTGCGTGGTCCTTTTCTTTTTTCGGCATTTCATAGATCTTTCT
TCCAGTGTAAGAAGTAATTCACCTATG
Found at i:114235728 original size:35 final size:35
Alignment explanation
Indices: 114235682--114235763 Score: 128
Period size: 35 Copynumber: 2.3 Consensus size: 35
114235672 GTATAAAAGT
* *
114235682 TATTTGAACCATTAAAACTTTTTAAGAAATCAGGG
1 TATTTAAACCATTAAAACTTTTTAAGAAATCAAGG
* *
114235717 TATTTAAACCATTGAAACTTTTTAAGAAATCAAGT
1 TATTTAAACCATTAAAACTTTTTAAGAAATCAAGG
114235752 TATTTAAACCAT
1 TATTTAAACCAT
114235764 GAGAATATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (35 bp):
TATTTAAACCATTAAAACTTTTTAAGAAATCAAGG
Found at i:114242951 original size:40 final size:39
Alignment explanation
Indices: 114242894--114242970 Score: 95
Period size: 39 Copynumber: 1.9 Consensus size: 39
114242884 AAATAAATTT
* *
114242894 ATTTTTATGATAATAAATTTTAATATTTTA-TATTTTTATA
1 ATTTTTATGAAAATAAA--TTAAAATTTTATTATTTTTATA
114242934 ATTTTTA-GAAAATTAAATTAAAATTTTATTATTTTTA
1 ATTTTTATGAAAA-TAAATTAAAATTTTATTATTTTTA
114242971 GGGGTGAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
38 10 0.30
39 12 0.36
40 11 0.33
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (39 bp):
ATTTTTATGAAAATAAATTAAAATTTTATTATTTTTATA
Found at i:114249175 original size:30 final size:29
Alignment explanation
Indices: 114249134--114249207 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
114249124 CACGTGTAAT
*
114249134 CCACACACCCGTGTGTAACACACGGGTAGG
1 CCACACGCCCGTGTGT-ACACACGGGTAGG
* * *
114249164 CCCCACGCCCGTGTG-ACATACGGGTATG
1 CCACACGCCCGTGTGTACACACGGGTAGG
114249192 CCACACGCCCGTGTGT
1 CCACACGCCCGTGTGT
114249208 CATGGCTGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
28 25 0.66
30 13 0.34
ACGTcount: A:0.20, C:0.36, G:0.27, T:0.16
Consensus pattern (29 bp):
CCACACGCCCGTGTGTACACACGGGTAGG
Found at i:114270023 original size:2 final size:2
Alignment explanation
Indices: 114270018--114270052 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
114270008 ATATATATAT
114270018 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
114270053 AGCATGTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:114280639 original size:64 final size:63
Alignment explanation
Indices: 114280532--114280753 Score: 372
Period size: 64 Copynumber: 3.5 Consensus size: 63
114280522 TGAGCTTATA
*
114280532 TAATTTATATAAAAAAATTTATATTACAAAGTTTGTTCAAATTAGATTAATGTTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTTGTTC-AATTAGATTAATGTTGTAATGTATT
114280596 TAATTTATATAACAAAATTTATATTACAAAGTTTGTTTCAATTAGATTAATGTTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTTG-TTCAATTAGATTAATGTTGTAATGTATT
* * *
114280660 TAATTTATATTACAAAATTTATATTACAAAGTTTGCTCCAATTAGATTAATGTTGTAATGTTTT
1 TAATTTATATAACAAAATTTATATTACAAAGTTTG-TTCAATTAGATTAATGTTGTAATGTATT
*
114280724 TAATTTATATTACAAAATTTATATTACAAA
1 TAATTTATATAACAAAATTTATATTACAAA
114280754 ACTAAGTTTG
Statistics
Matches: 152, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
64 149 0.98
65 3 0.02
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (63 bp):
TAATTTATATAACAAAATTTATATTACAAAGTTTGTTCAATTAGATTAATGTTGTAATGTATT
Found at i:114280680 original size:14 final size:14
Alignment explanation
Indices: 114280661--114280689 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
114280651 TAATGTATTT
114280661 AATTTATATTACAA
1 AATTTATATTACAA
114280675 AATTTATATTACAA
1 AATTTATATTACAA
114280689 A
1 A
114280690 GTTTGCTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:114280744 original size:14 final size:14
Alignment explanation
Indices: 114280725--114280754 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
114280715 TAATGTTTTT
114280725 AATTTATATTACAA
1 AATTTATATTACAA
114280739 AATTTATATTACAA
1 AATTTATATTACAA
114280753 AA
1 AA
114280755 CTAAGTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:114282025 original size:14 final size:14
Alignment explanation
Indices: 114282005--114282039 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
114281995 CAAATTACAT
114282005 ATTAGAATAGGATC
1 ATTAGAATAGGATC
* *
114282019 GTTAGAATAGTATC
1 ATTAGAATAGGATC
114282033 ATTAGAA
1 ATTAGAA
114282040 AAAAAATCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (14 bp):
ATTAGAATAGGATC
Found at i:114282693 original size:17 final size:16
Alignment explanation
Indices: 114282665--114282714 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
114282655 TATAAACATG
*
114282665 TATTTAATTATTAATAGA
1 TATTT-ATTATTAA-AAA
114282683 TATTTATTATTTAAAAA
1 TATTTATTA-TTAAAAA
114282700 TATTTATTAATTAAA
1 TATTTATT-ATTAAA
114282715 TAATTATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 19 0.66
18 10 0.34
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TATTTATTATTAAAAA
Found at i:114282864 original size:11 final size:12
Alignment explanation
Indices: 114282834--114282867 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
114282824 GTATGTTTAC
114282834 TTATTATATAAG
1 TTATTATATAAG
114282846 TATATTAT-TAAG
1 T-TATTATATAAG
114282858 TTATTATATA
1 TTATTATATA
114282868 TATATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (12 bp):
TTATTATATAAG
Found at i:114282869 original size:2 final size:2
Alignment explanation
Indices: 114282862--114282907 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
114282852 ATTAAGTTAT
114282862 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
114282904 TA TA
1 TA TA
114282908 GTAAATGAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:114282999 original size:18 final size:19
Alignment explanation
Indices: 114282964--114283004 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
114282954 AATAGCAAAC
*
114282964 GGGAAAAGAAGGAAGAAAA
1 GGGAAAAGAAGAAAGAAAA
114282983 GGGAAAAGAA-AAAGAAAA
1 GGGAAAAGAAGAAAGAAAA
114283001 GGGA
1 GGGA
114283005 GAATTAGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (19 bp):
GGGAAAAGAAGAAAGAAAA
Found at i:114284105 original size:6 final size:6
Alignment explanation
Indices: 114284081--114284133 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
114284071 CTATGTACCG
* * * * * *
114284081 TACTGC TACTAT TATTGT TACTGT TATTGT TACTGT TACCGT TACCGT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT
114284129 TACTG
1 TACTG
114284134 ACGTAGTGTA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:114286729 original size:117 final size:120
Alignment explanation
Indices: 114286526--114286761 Score: 379
Period size: 119 Copynumber: 2.0 Consensus size: 120
114286516 AAATAAAAAA
* * * *
114286526 TTTATATTAAAATATTAAAAATAATATGCCAATAAAAAATATAAAATAAAGAACATAACATAAAT
1 TTTATATTAAAATACTAAAAATAACATGCCAATAAAAAATATAAAACAAAGAACATAACATAAAC
*
114286591 GATACATAATAAATATAAATA-TTATTATTATTTTAAAATGATAATAAGTAAATT
66 GATACATAATAAATACAAATATTTATTATTATTTTAAAATGATAATAAGTAAATT
*
114286645 TTTATATTAAAATACTAAAAATAACATGCCAATAAAAAA-ATATAACAAA-AACATAACATAAAC
1 TTTATATTAAAATACTAAAAATAACATGCCAATAAAAAATATAAAACAAAGAACATAACATAAAC
*
114286708 GATACATAATAAATACGAATATTTTATTATTATTTTAAAATGATAATAAGTAAA
66 GATACATAATAAATACAAATA-TTTATTATTATTTTAAAATGATAATAAGTAAA
114286762 CATTTTTGGT
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
117 32 0.30
118 8 0.07
119 68 0.63
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (120 bp):
TTTATATTAAAATACTAAAAATAACATGCCAATAAAAAATATAAAACAAAGAACATAACATAAAC
GATACATAATAAATACAAATATTTATTATTATTTTAAAATGATAATAAGTAAATT
Found at i:114287622 original size:27 final size:27
Alignment explanation
Indices: 114287582--114287645 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
114287572 TGCCAAAATG
* *
114287582 GTGCCGCCTCCGCCAGCTCCTCCACCA
1 GTGCCGCCTCCGCCAACTCCGCCACCA
* * *
114287609 GTGCTGCCTGCGCCAACTCCGCCACGA
1 GTGCCGCCTCCGCCAACTCCGCCACCA
114287636 GTGCCGCCTC
1 GTGCCGCCTC
114287646 TCCCCTAGGC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.11, C:0.50, G:0.23, T:0.16
Consensus pattern (27 bp):
GTGCCGCCTCCGCCAACTCCGCCACCA
Found at i:114299288 original size:36 final size:36
Alignment explanation
Indices: 114299248--114299530 Score: 151
Period size: 36 Copynumber: 7.6 Consensus size: 36
114299238 AGAATAATAT
* *
114299248 TTATTCAGTAACAGTCAGTTATTCGGTAACAATTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATTAA
* * * * * *
114299284 TTATTTAATAATAACCAGTTATTCGGTATCGATCAATTGA
1 TTATTCAGTAACAATCAGTTATTCAGTA---A-CAATTAA
* * *
114299324 TCGGCTATCCAGTAACACTCATTTATTCAGTAA-AATTAGA
1 T----TATTCAGTAACAATCAGTTATTCAGTAACAATTA-A
* * * * *
114299364 -TATTCAGTAACTATTAAGTTATTCAGTAGC-AGTCA
1 TTATTCAGTAAC-AATCAGTTATTCAGTAACAATTAA
* ** *
114299399 TTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAATCAGTTATTCAGTAACAATTAA
* * *
114299436 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAAT-TAA
* * * * * * *
114299473 -TATCCAGTCACAGTCAATTATCCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATTAA
*
114299508 TTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAACAATCAGTTATT
114299531 TTATACCTTT
Statistics
Matches: 179, Mismatches: 52, Indels: 32
0.68 0.20 0.12
Matches are distributed among these distances:
35 13 0.07
36 118 0.66
37 15 0.08
39 5 0.03
40 8 0.04
41 1 0.01
44 19 0.11
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.36
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATTAA
Found at i:114299356 original size:18 final size:18
Alignment explanation
Indices: 114299333--114299530 Score: 132
Period size: 18 Copynumber: 11.0 Consensus size: 18
114299323 ATCGGCTATC
* *
114299333 CAGTAACACTCATTTATT
1 CAGTAACAATCAGTTATT
* *
114299351 CAGTAA-AATTAGATATT
1 CAGTAACAATCAGTTATT
* *
114299368 CAGTAACTATTAAGTTATT
1 CAGTAAC-AATCAGTTATT
* *
114299387 CAGTAGCAGTCA-TTCATT
1 CAGTAACAATCAGTT-ATT
*
114299405 CAGTGACAATCAGTTATT
1 CAGTAACAATCAGTTATT
** *
114299423 CAGTAATGATCAATTATT
1 CAGTAACAATCAGTTATT
* *
114299441 CAGTAATATTCAGTTATT
1 CAGTAACAATCAGTTATT
* * *
114299459 CAGTAACAGTCTA-ATATC
1 CAGTAACAATC-AGTTATT
* * * *
114299477 CAGTCACAGTCAATTATC
1 CAGTAACAATCAGTTATT
* *
114299495 CGGTAACAATCAATTATT
1 CAGTAACAATCAGTTATT
*
114299513 CAGTAATAATCAGTTATT
1 CAGTAACAATCAGTTATT
114299531 TTATACCTTT
Statistics
Matches: 141, Mismatches: 33, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
17 16 0.11
18 108 0.77
19 17 0.12
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (18 bp):
CAGTAACAATCAGTTATT
Found at i:114299463 original size:72 final size:72
Alignment explanation
Indices: 114299329--114299530 Score: 203
Period size: 72 Copynumber: 2.8 Consensus size: 72
114299319 ATTGATCGGC
* * * * * *
114299329 TATCCAGTAACACTCATTTATTCAGTAA-AATTAGA-TATTCAGTAACTATTAAGTTATTCAGTA
1 TATCCAGTCACAATCAATTATCCAGTAACAATCA-ATTATTCAGTAA-TATTCAGTTATTCAGTA
* *
114299392 GCAGTC-AT
64 ACAGTCTAA
* * * * **
114299400 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTAA
1 T-ATCCAGTCACAATCAATTATCCAGTAACAATCAATTATTCAGTAATATTCAGTTATTCAGTAA
114299465 CAGTCTAA
65 CAGTCTAA
* * *
114299473 TATCCAGTCACAGTCAATTATCCGGTAACAATCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGTCACAATCAATTATCCAGTAACAATCAATTATTCAGTAATATTCAGTTATT
114299531 TTATACCTTT
Statistics
Matches: 109, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
71 1 0.01
72 93 0.85
73 15 0.14
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (72 bp):
TATCCAGTCACAATCAATTATCCAGTAACAATCAATTATTCAGTAATATTCAGTTATTCAGTAAC
AGTCTAA
Found at i:114299758 original size:45 final size:45
Alignment explanation
Indices: 114299688--114299874 Score: 257
Period size: 45 Copynumber: 4.2 Consensus size: 45
114299678 ACAAATCCGG
* * * *
114299688 AACAGTAACAGTATTCAACACACAAAGTGCTGAATCAGTAACGGT
1 AACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGT
* * * *
114299733 AACAATAACAATATTTGACATACAAAGTGTCGAATCGGTAACGGT
1 AACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGT
* *
114299778 AACAGTAACAATATTCGACACACACAGTGCCGAATCGGTAACAGT
1 AACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGT
* *
114299823 AGCAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACAGT
1 AACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGT
*
114299868 AGCAGTA
1 AACAGTA
114299875 GCGGTAATAA
Statistics
Matches: 126, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 126 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (45 bp):
AACAGTAACAATATTCGACACACAAAGTGCCGAATCGGTAACGGT
Found at i:114300284 original size:5 final size:5
Alignment explanation
Indices: 114300273--114300324 Score: 77
Period size: 5 Copynumber: 10.2 Consensus size: 5
114300263 AATTAATCAT
* *
114300273 AATTC CATTC CATTC AATTC AATTC AATTC AATTC AATTC AATTC AAATTC
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC -AATTC
114300324 A
1 A
114300325 CTTTTCCACT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
5 39 0.89
6 5 0.11
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTC
Found at i:114300711 original size:21 final size:21
Alignment explanation
Indices: 114300686--114300746 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
114300676 TTCAATTTCA
114300686 ATTCAATAA-CAATTCACATAT
1 ATTCAATAATCAATTCA-ATAT
114300707 ATTC-ATAAATCAATTCAATAT
1 ATTCAAT-AATCAATTCAATAT
* * *
114300728 AATCAATATTCAATCCAAT
1 ATTCAATAATCAATTCAAT
114300747 TCATATAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 23 0.68
22 9 0.26
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTCAATAATCAATTCAATAT
Found at i:114301971 original size:26 final size:26
Alignment explanation
Indices: 114301937--114301991 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
114301927 CTTTCCCCTG
*
114301937 TTTCGTCTCGTTCTCTGTTTCTTTTTC
1 TTTCGTCTCGTTCTCT-TTTCTTTTAC
* *
114301964 TTTC-TCTCTTTCTCTTTTGTTTTAC
1 TTTCGTCTCGTTCTCTTTTCTTTTAC
114301989 TTT
1 TTT
114301992 ATATATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 11 0.44
26 10 0.40
27 4 0.16
ACGTcount: A:0.02, C:0.24, G:0.07, T:0.67
Consensus pattern (26 bp):
TTTCGTCTCGTTCTCTTTTCTTTTAC
Found at i:114302047 original size:18 final size:18
Alignment explanation
Indices: 114302004--114302061 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
114301994 ATATATATAT
* *
114302004 ATATATATATATATATATA
1 ATATATATA-ATAAAAATA
* *
114302023 TTATATATAATAACAATA
1 ATATATATAATAAAAATA
114302041 ATATATATAATAAAAATA
1 ATATATATAATAAAAATA
114302059 ATA
1 ATA
114302062 ATAATGACTT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 25 0.76
19 8 0.24
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATATATAATAAAAATA
Found at i:114302049 original size:2 final size:2
Alignment explanation
Indices: 114301991--114302031 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
114301981 TGTTTTACTT
114301991 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
114302032 ATAACAATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:114303535 original size:12 final size:11
Alignment explanation
Indices: 114303502--114303531 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
114303492 TTTCTATTCA
114303502 TTTTTATAATT
1 TTTTTATAATT
114303513 TTTTT-TAATT
1 TTTTTATAATT
114303523 TTTTTATAA
1 TTTTTATAA
114303532 ATTTATGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:114304661 original size:41 final size:41
Alignment explanation
Indices: 114304604--114304853 Score: 234
Period size: 41 Copynumber: 6.1 Consensus size: 41
114304594 CAAAAATTAT
114304604 AAAACGCAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTA
1 AAAAC-CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTA
** * * **** *
114304646 AAAATTATAGAAATAGCGGCGTTTTACAAAAAACGCCGCCA
1 AAAACCAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTA
* * * ****
114304687 AAAAACATAGCAATAGTGGCGTTTTACCAAAAACGCCGCTA
1 AAAACCAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTA
* * * * *
114304728 AAAGCCAGAGCATTAGTGGCGCTTTTGGTAAAACGCCACTA
1 AAAACCAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTA
* * *
114304769 AAAACCAAAG-AATTAGCGGCG-CTTTGTGTAAAACGCCACTA
1 AAAACCAGAGCAA-TAGCGGCGTTTTTG-GTAAAACGCCGCTA
*
114304810 AAAACCAGAGCATTAGCGGCGTTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTA
114304851 AAA
1 AAA
114304854 GTCATTTAAC
Statistics
Matches: 170, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
40 5 0.03
41 156 0.92
42 9 0.05
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
AAAACCAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTA
Found at i:114304831 original size:123 final size:123
Alignment explanation
Indices: 114304610--114304854 Score: 283
Period size: 123 Copynumber: 2.0 Consensus size: 123
114304600 TTATAAAACG
* * ** * *
114304610 CAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAATTATAGAAATAGCGGCGTTTTACAA
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCACTAAAAACCAAAGAAATAGCGGCGCTTTACAA
* * *
114304675 AAAACGCCGCCAAAAAACATAGCAATAGTGGCGTTTTACCAAAAACGCCGCTAAAAGC
66 AAAACGCCACCAAAAAACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGCTAAAAGC
* * * ****
114304733 CAGAGCATTAGTGGCGCTTTTGGTAAAACGCCACTAAAAACCAAAGAATTAGCGGCGCTTTGTGT
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCACTAAAAACCAAAGAAATAGCGGCGCTTTACAA
* * * ****
114304798 AAAACGCCACTAAAAACCAGAGCATTAGCGGCGTTTTTGGTAAAACGCCGCTAAAAG
66 AAAACGCCACCAAAAAACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGCTAAAAG
114304855 TCATTTAACC
Statistics
Matches: 99, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
123 99 1.00
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (123 bp):
CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCACTAAAAACCAAAGAAATAGCGGCGCTTTACAA
AAAACGCCACCAAAAAACAGAGCAATAGCGGCGTTTTACCAAAAACGCCGCTAAAAGC
Found at i:114305435 original size:30 final size:30
Alignment explanation
Indices: 114305401--114305465 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
114305391 TATGGTTTAA
114305401 GGGTTGGAGATTATAAGGTTTAGAGGATAG
1 GGGTTGGAGATTATAAGGTTTAGAGGATAG
114305431 GGGTTGGAGATTATAAGGTTTAGAGGATAG
1 GGGTTGGAGATTATAAGGTTTAGAGGATAG
114305461 GGGTT
1 GGGTT
114305466 AAGTGTTAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.28, C:0.00, G:0.42, T:0.31
Consensus pattern (30 bp):
GGGTTGGAGATTATAAGGTTTAGAGGATAG
Found at i:114305962 original size:114 final size:115
Alignment explanation
Indices: 114305833--114306363 Score: 519
Period size: 114 Copynumber: 4.6 Consensus size: 115
114305823 CCGTTTTCTT
* * *
114305833 TGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCACAATAGGGTTG-ATTTAGCGGTGC-AAGGTT
1 TGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAAGG-T
* * * *
114305896 ATAAACGCCACTAAGGGTTATTTTGTTTAGATCAAAACGGTGTAGTTTTTA
65 ATAAACGCCACTAAAGGTTATTCTGTTTATATCAAAACGATGTAGTTTTTA
* * * *
114305947 TGGATTTTTAGTGGCGTTTTTGGTTCAAACGCCACAATAGGTTTG-ATTTAGTGGCGCTAAGGTA
1 TGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAAGGTA
*
114306011 TAAACGCCACTAATGGTTAATT-TGTTTATATCAAAACGATGTAG-TTTTA
66 TAAACGCCACTAAAGGTT-ATTCTGTTTATATCAAAACGATGTAGTTTTTA
* * * * * * *
114306060 TTCGATTATTAGTGGCATTTTAGGGTAAAACGCCGGAATA-GTTTCGCCTTTAGCGGCGCT-TGG
1 -TGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTT-GCATTTAGCGGCGCTAAGG
* * * * *
114306123 TGATAAAACGCCACTAAATGTTATTCTGTTCATATGAAAAC-ATCGTCGTTTTTTT
64 T-AT-AAACGCCACTAAAGGTTATTCTGTTTATATCAAAACGAT-GTAG-TTTTTA
* * * * * * *
114306178 TGGATTTTTAGTGGCGTTTTAGGGTGAAACGCCGCAATTGATTTGCCTTTAGCGGCTCTACGG-A
1 TGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAAGGTA
* * * * *
114306242 AAAACGCCACTAAAGTTTATTCTGTTTATATCAAAACGGTGTTGTTTTGTT
66 TAAACGCCACTAAAGGTTATTCTGTTTATATCAAAACGATGTAGTTTT-TA
** * * *
114306293 TGTTTTTTTAGTGGCG-TTTATGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCGCT-AGGTG
1 TGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAAGGT-
114306356 A-AAACGCC
65 ATAAACGCC
114306364 GCAAATGTTA
Statistics
Matches: 351, Mismatches: 49, Indels: 34
0.81 0.11 0.08
Matches are distributed among these distances:
113 11 0.03
114 174 0.50
115 77 0.22
116 33 0.09
117 47 0.13
118 9 0.03
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.37
Consensus pattern (115 bp):
TGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCATTTAGCGGCGCTAAGGTA
TAAACGCCACTAAAGGTTATTCTGTTTATATCAAAACGATGTAGTTTTTA
Found at i:114306210 original size:231 final size:228
Alignment explanation
Indices: 114305941--114306373 Score: 532
Period size: 231 Copynumber: 1.9 Consensus size: 228
114305931 AACGGTGTAG
* * * *
114305941 TTTTTATGGATTTTTAGTGGCGTTTTTGGTTCAAACGCCACAATAGGTTTG-ATTTAGTGGCGCT
1 TTTTTATGGATTTTTAGTGGCGTTTTAGGGTCAAACGCCACAATAGATTTGCATTTAGCGGCGCT
* *
114306005 AAGGTATAAACGCCACTAATGGTTAATT-TGTTTATATCAAAACGATGTAGTTTTATTCG-ATTA
66 AAGG-AAAAACGCCACTAA-AGTTAATTCTGTTTATATCAAAACGATGTAGTTTTATTCGTATTA
* * *
114306068 TTAGTGGCATTTTAGGGTAAAACGCCGGAA-TAGTTTCGCCTTTAGCGGCGCTTGGTGATAAAAC
129 TTAGTGGC-GTTTAGGGTAAAACGCCGCAATTAGTTT-GCCTTTAGCGGCGCTAGGTG--AAAAC
114306132 GCCACTAAATGTTATTCTGTTCATATGAAAACATCGTCGT
190 GCCAC-AAATGTTATTCTGTTCATATGAAAACATCGTCGT
* * * * * *
114306172 TTTTTTTGGATTTTTAGTGGCGTTTTAGGGTGAAACGCCGCAATTGATTTGCCTTTAGCGGCTCT
1 TTTTTATGGATTTTTAGTGGCGTTTTAGGGTCAAACGCCACAATAGATTTGCATTTAGCGGCGCT
* * * * * * * *
114306237 ACGGAAAAACGCCACTAAAGTTTATTCTGTTTATATCAAAACGGTGTTGTTTTGTTTGTTTTTTT
66 AAGGAAAAACGCCACTAAAGTTAATTCTGTTTATATCAAAACGATGTAGTTTTATTCGTATTATT
* * * *
114306302 AGTGGCGTTTATGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCGCTAGGTGAAAACGCCGCA
131 AGTGGCGTTTAGGGTAAAACGCCGCAATTAGTTTGCCTTTAGCGGCGCTAGGTGAAAACGCCACA
114306367 AATGTTA
196 AATGTTA
114306374 ATTTATTTTG
Statistics
Matches: 171, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
228 8 0.05
229 9 0.05
230 6 0.04
231 120 0.70
232 28 0.16
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (228 bp):
TTTTTATGGATTTTTAGTGGCGTTTTAGGGTCAAACGCCACAATAGATTTGCATTTAGCGGCGCT
AAGGAAAAACGCCACTAAAGTTAATTCTGTTTATATCAAAACGATGTAGTTTTATTCGTATTATT
AGTGGCGTTTAGGGTAAAACGCCGCAATTAGTTTGCCTTTAGCGGCGCTAGGTGAAAACGCCACA
AATGTTATTCTGTTCATATGAAAACATCGTCGT
Found at i:114306500 original size:58 final size:58
Alignment explanation
Indices: 114306432--114306559 Score: 177
Period size: 58 Copynumber: 2.2 Consensus size: 58
114306422 ACACCGAGTT
* * * * *
114306432 CCCCCTTCTCCCTGGTTTATTTCCCCATTTTCCCT-CTCTTGAATCCCTAAAATAATCA
1 CCCCCTTCTCCCTAGTTTATTCCCCCATTTTCCCTAAT-TCGAAACCCTAAAATAATCA
*
114306490 CCCCCTTCTCCCTAGTTTATTCCCCCATTTTCCCTAATTCGAAACCCTAAAATAATTA
1 CCCCCTTCTCCCTAGTTTATTCCCCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
*
114306548 CCCCTTTCTCCC
1 CCCCCTTCTCCC
114306560 CAATTTGAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
58 61 0.98
59 1 0.02
ACGTcount: A:0.20, C:0.40, G:0.04, T:0.36
Consensus pattern (58 bp):
CCCCCTTCTCCCTAGTTTATTCCCCCATTTTCCCTAATTCGAAACCCTAAAATAATCA
Found at i:114308821 original size:25 final size:24
Alignment explanation
Indices: 114308793--114308866 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 24
114308783 TTTATTTTGG
114308793 ATTAATCAGGACACAATTTTTTTAA
1 ATTAATCA-GACACAATTTTTTTAA
**
114308818 ATT-A-C-GACAC-ATATTTTGCAA
1 ATTAATCAGACACAAT-TTTTTTAA
*
114308839 TTTAATCACGACACAA-TTTTTTAA
1 ATTAATCA-GACACAATTTTTTTAA
114308863 ATTA
1 ATTA
114308867 CATATTTTGG
Statistics
Matches: 37, Mismatches: 6, Indels: 13
0.66 0.11 0.23
Matches are distributed among these distances:
20 2 0.05
21 13 0.35
22 1 0.03
23 2 0.05
24 10 0.27
25 8 0.22
26 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (24 bp):
ATTAATCAGACACAATTTTTTTAA
Found at i:114308993 original size:13 final size:13
Alignment explanation
Indices: 114308975--114309004 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
114308965 TTACATAATA
114308975 CATAAATATATAT
1 CATAAATATATAT
114308988 CATAAATATATAT
1 CATAAATATATAT
114309001 CATA
1 CATA
114309005 TCATAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:114309005 original size:65 final size:63
Alignment explanation
Indices: 114308929--114309113 Score: 179
Period size: 56 Copynumber: 2.9 Consensus size: 63
114308919 TAATATTTAT
*
114308929 TATATATCATATAATAACTTATATAACTTACAAAACTTACATAATACATAAATATATATCATAAA
1 TATATATCATAT-ATAACTTA-ATAACTTACAAAACTAACATAATACATAAATATATATCATAAA
* *
114308994 TATATATC--ATAT--C---ATAACTTACACAACTAACATAATACATAAATATATTTCATAAA
1 TATATATCATATATAACTTAATAACTTACAAAACTAACATAATACATAAATATATATCATAAA
* * *
114309050 TATGTATCATATCATAACTTACACAACTTACATAATACTCCAA-ATATATATATAAATATATATC
1 TATATATCATAT-ATAACTTA-ATAACTTACA-AA-ACT--AACATA-ATACATAAATATATATC
114309114 TTATCATAAC
Statistics
Matches: 98, Mismatches: 8, Indels: 24
0.75 0.06 0.18
Matches are distributed among these distances:
56 47 0.48
58 2 0.02
59 2 0.02
60 1 0.01
61 1 0.01
62 2 0.02
63 2 0.02
65 17 0.17
66 1 0.01
67 3 0.03
68 3 0.03
69 17 0.17
ACGTcount: A:0.49, C:0.15, G:0.01, T:0.35
Consensus pattern (63 bp):
TATATATCATATATAACTTAATAACTTACAAAACTAACATAATACATAAATATATATCATAAA
Found at i:114309012 original size:56 final size:56
Alignment explanation
Indices: 114308951--114309157 Score: 337
Period size: 56 Copynumber: 3.7 Consensus size: 56
114308941 AATAACTTAT
*
114308951 ATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATATC
1 ATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATATC
* * *
114309007 ATAACTTACACAACTAACATAATACATAAATATATTTCATAAATATGTATCATATC
1 ATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATATC
*
114309063 ATAACTTACACAACTTACATAATAC-TCCAAATATATAT-ATAAATATATATCTTATC
1 ATAACTTACACAACTTACATAATACAT--AAATATATATCATAAATATATATCATATC
114309119 ATAACTTACACAACTTACATAATACATAAATATATATCA
1 ATAACTTACACAACTTACATAATACATAAATATATATCA
114309158 ATCATAACTT
Statistics
Matches: 139, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
55 11 0.08
56 118 0.85
57 10 0.07
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.34
Consensus pattern (56 bp):
ATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATATC
Found at i:114309127 original size:47 final size:43
Alignment explanation
Indices: 114309074--114309171 Score: 108
Period size: 43 Copynumber: 2.2 Consensus size: 43
114309064 TAACTTACAC
* *
114309074 AACTTACATAATACTCCAAATATATATATAAATATATATCTTATCAT
1 AACTTACATAA-ACT-CAAATA-ATACATAAATATATATC-AATCAT
* * *
114309121 AACTTACA-CAACTTACATAATACATAAATATATATCAATCAT
1 AACTTACATAAACTCAAATAATACATAAATATATATCAATCAT
114309163 AACTTACAT
1 AACTTACAT
114309172 GCCTTACATA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 13 0.29
43 16 0.36
44 4 0.09
45 3 0.07
46 1 0.02
47 8 0.18
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (43 bp):
AACTTACATAAACTCAAATAATACATAAATATATATCAATCAT
Found at i:114309209 original size:9 final size:9
Alignment explanation
Indices: 114309195--114309236 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
114309185 GTATATCATA
114309195 ACATAACTT
1 ACATAACTT
114309204 ACATAACTT
1 ACATAACTT
114309213 ACA-AAGCTT
1 ACATAA-CTT
*
114309222 ACTTAACTT
1 ACATAACTT
114309231 ACATAA
1 ACATAA
114309237 TATATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 2 0.07
9 25 0.86
10 2 0.07
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.31
Consensus pattern (9 bp):
ACATAACTT
Found at i:114309214 original size:36 final size:35
Alignment explanation
Indices: 114309130--114309215 Score: 113
Period size: 36 Copynumber: 2.5 Consensus size: 35
114309120 TAACTTACAC
*
114309130 AACTTACATAA--TACATAAATATATATCAATCAT
1 AACTTACATAACTTACATAAATATATATCAAACAT
** *
114309163 AACTTACATGCCTTACATAAATGTATATCATAACAT
1 AACTTACATAACTTACATAAATATATATCA-AACAT
114309199 AACTTACATAACTTACA
1 AACTTACATAACTTACA
114309216 AAGCTTACTT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
33 9 0.20
35 16 0.36
36 19 0.43
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.33
Consensus pattern (35 bp):
AACTTACATAACTTACATAAATATATATCAAACAT
Found at i:114314835 original size:21 final size:21
Alignment explanation
Indices: 114314783--114314837 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
114314773 ACTTAGAGCG
* *
114314783 GAGGCAGTAGAGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
114314804 GCGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
114314825 GAGGTAGCAGCGA
1 GAGGCAGCAGCGA
114314838 TGGCAGCAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.16, G:0.51, T:0.04
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:114314846 original size:21 final size:21
Alignment explanation
Indices: 114314794--114314848 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
114314784 AGGCAGTAGA
* * *
114314794 GAGGGAGGCAGCGGCAGCAGC
1 GAGGCAGGCAGAGGTAGCAGC
*
114314815 GAGGGAGGCAGAGGTAGCAGC
1 GAGGCAGGCAGAGGTAGCAGC
114314836 GATGGCA-GCAGAG
1 GA-GGCAGGCAGAG
114314849 CAGAGCAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.27, C:0.18, G:0.51, T:0.04
Consensus pattern (21 bp):
GAGGCAGGCAGAGGTAGCAGC
Found at i:114315251 original size:43 final size:43
Alignment explanation
Indices: 114315204--114315297 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 43
114315194 TCTGTCAAAA
114315204 TTAGCGGCG-TTTGCCATAAAAACGCCGCTAAAAGCCATGACTT
1 TTAGCGGCGCTTTGCCA-AAAAACGCCGCTAAAAGCCATGACTT
* * *
114315247 TTAGCGGCGCTTTTCCAACAAACGCCGCTAAAGGCCATGACTT
1 TTAGCGGCGCTTTGCCAAAAAACGCCGCTAAAAGCCATGACTT
114315290 TTAGCGGC
1 TTAGCGGC
114315298 TTTTTTTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 41 0.87
44 6 0.13
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (43 bp):
TTAGCGGCGCTTTGCCAAAAAACGCCGCTAAAAGCCATGACTT
Found at i:114317126 original size:35 final size:34
Alignment explanation
Indices: 114317087--114317152 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
114317077 ATGTAATATA
114317087 AACATATAAGAAAAATAATAGATATA-ATATAAAGT
1 AACATATAA-AAAAAT-ATAGATATATATATAAAGT
* *
114317122 AACATATAAAACAATATATATATATATATAA
1 AACATATAAAAAAATATAGATATATATATAA
114317153 TTAATAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 8 0.29
34 11 0.39
35 9 0.32
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (34 bp):
AACATATAAAAAAATATAGATATATATATAAAGT
Found at i:114317284 original size:16 final size:17
Alignment explanation
Indices: 114317246--114317286 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
114317236 AATAATCATA
114317246 TATAATTAAAATAATACT
1 TATAA-TAAAATAATACT
*
114317264 TATAATAAAATAAT-TT
1 TATAATAAAATAATACT
114317280 TATAATA
1 TATAATA
114317287 TATAATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 9 0.41
18 5 0.23
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TATAATAAAATAATACT
Found at i:114325964 original size:19 final size:20
Alignment explanation
Indices: 114325925--114325964 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
114325915 AAAAATCTAA
*
114325925 TTTAATATTTTTATAGGTTT
1 TTTAATATTTTTATAAGTTT
114325945 TTTAA-ATTTTTATAA-TTT
1 TTTAATATTTTTATAAGTTT
114325963 TT
1 TT
114325965 AGAGAGGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 9 0.47
20 5 0.26
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTAATATTTTTATAAGTTT
Found at i:114327842 original size:3 final size:3
Alignment explanation
Indices: 114327834--114327870 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
114327824 AACTTAAACC
114327834 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
114327871 ATTATTATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:114334469 original size:2 final size:2
Alignment explanation
Indices: 114334462--114334487 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
114334452 GACCAAATTA
114334462 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
114334488 TAAACCAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114337628 original size:2 final size:2
Alignment explanation
Indices: 114337621--114337659 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
114337611 TAAACATAAA
114337621 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114337660 ACTCAAAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:114337863 original size:15 final size:15
Alignment explanation
Indices: 114337829--114337864 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
114337819 TGTTTGACCA
*
114337829 ATTGAAAAATTAATT
1 ATTGAAAAATTAAAT
*
114337844 GTTGAAAAATTAAAT
1 ATTGAAAAATTAAAT
114337859 ATTGAA
1 ATTGAA
114337865 TTTATAAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (15 bp):
ATTGAAAAATTAAAT
Found at i:114338177 original size:2 final size:2
Alignment explanation
Indices: 114338170--114338211 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
114338160 GTAAATTTAC
114338170 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114338212 GGCAAATGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114340886 original size:28 final size:26
Alignment explanation
Indices: 114340853--114340912 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
114340843 TATTATAAGA
*
114340853 AAATAATA-ATAATGATTAAAGTATATT
1 AAATAATATATAAT-AATAAAGTA-ATT
*
114340880 ATAATAATATATTATAATAAAGTAATT
1 A-AATAATATATAATAATAAAGTAATT
114340907 AAATAA
1 AAATAA
114340913 AAAAAGAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
26 5 0.17
27 5 0.17
28 15 0.52
29 4 0.14
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (26 bp):
AAATAATATATAATAATAAAGTAATT
Found at i:114340911 original size:13 final size:15
Alignment explanation
Indices: 114340869--114340913 Score: 62
Period size: 13 Copynumber: 3.3 Consensus size: 15
114340859 TAATAATGAT
114340869 TAAAGTATATTATAA
1 TAAAGTATATTATAA
114340884 T-AA-TATATTATAA
1 TAAAGTATATTATAA
114340897 TAAAGTA-ATTA-AA
1 TAAAGTATATTATAA
114340910 TAAA
1 TAAA
114340914 AAAAGAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 17 0.61
14 8 0.29
15 3 0.11
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (15 bp):
TAAAGTATATTATAA
Found at i:114344943 original size:14 final size:14
Alignment explanation
Indices: 114344924--114344954 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
114344914 TATGGCAGTC
114344924 GTGGATGATTGTAT
1 GTGGATGATTGTAT
114344938 GTGGATGATTGTAT
1 GTGGATGATTGTAT
114344952 GTG
1 GTG
114344955 TATGCCTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.39, T:0.42
Consensus pattern (14 bp):
GTGGATGATTGTAT
Found at i:114354093 original size:28 final size:30
Alignment explanation
Indices: 114354061--114354117 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
114354051 ACAGCCATGA
114354061 CTCACA-G-GCATGTGGTCTACCCATGTGC
1 CTCACACGAGCATGTGGTCTACCCATGTGC
* *
114354089 CTCACACGAGCATGTGGTTTACCCGTGTG
1 CTCACACGAGCATGTGGTCTACCCATGTG
114354118 GAAGTGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.24
29 1 0.04
30 18 0.72
ACGTcount: A:0.18, C:0.30, G:0.26, T:0.26
Consensus pattern (30 bp):
CTCACACGAGCATGTGGTCTACCCATGTGC
Found at i:114358988 original size:9 final size:9
Alignment explanation
Indices: 114358974--114359001 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
114358964 ACAACACGTC
114358974 GTGGCTTTA
1 GTGGCTTTA
114358983 GTGGCTTTA
1 GTGGCTTTA
114358992 GTGGCTTTA
1 GTGGCTTTA
114359001 G
1 G
114359002 CGGCGCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.36, T:0.43
Consensus pattern (9 bp):
GTGGCTTTA
Found at i:114359072 original size:39 final size:39
Alignment explanation
Indices: 114358998--114359091 Score: 138
Period size: 39 Copynumber: 2.4 Consensus size: 39
114358988 TTTAGTGGCT
*
114358998 TTAGCGGCGCTTTTTAAAAATGCCGCTAAAGATCGAGTA
1 TTAGCGGCGCTTTTTAAAAACGCCGCTAAAGATCGAGTA
* *
114359037 TTAGCGGCGCTTTTTGGAAAACGTCGCTAAA-ATCGAGTA
1 TTAGCGGCGCTTTTT-AAAAACGCCGCTAAAGATCGAGTA
114359076 TTAGCGGCG-TTTTTAA
1 TTAGCGGCGCTTTTTAA
114359092 TATGTACACC
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
37 1 0.02
38 5 0.10
39 32 0.64
40 12 0.24
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (39 bp):
TTAGCGGCGCTTTTTAAAAACGCCGCTAAAGATCGAGTA
Found at i:114359592 original size:22 final size:22
Alignment explanation
Indices: 114359562--114359626 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
114359552 TTAATGGCTA
*
114359562 GGGATTAGGGGTTAAGTGTTAAG
1 GGGA-TAGGGGTTAAGCGTTAAG
*
114359585 GGGATAGGGGTTAGGCGTTAAG
1 GGGATAGGGGTTAAGCGTTAAG
* *
114359607 GGGACAGGGGTTAAGGGTTA
1 GGGATAGGGGTTAAGCGTTA
114359627 GAGGTTTATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 33 0.89
23 4 0.11
ACGTcount: A:0.25, C:0.03, G:0.48, T:0.25
Consensus pattern (22 bp):
GGGATAGGGGTTAAGCGTTAAG
Found at i:114359677 original size:14 final size:14
Alignment explanation
Indices: 114359658--114359734 Score: 50
Period size: 14 Copynumber: 5.4 Consensus size: 14
114359648 AATATTTTAA
*
114359658 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
114359672 GGTTTAGGGATTAT
1 GGTTTAGGGATTAT
* * * *
114359686 -GTGATGGGGTTTAA
1 GGT-TTAGGGATTAT
*
114359700 GGTTTAGGGGTTA-
1 GGTTTAGGGATTAT
*
114359713 GGTGTTAAGGGTTTAT
1 GGT-TT-AGGGATTAT
114359729 GGTTTA
1 GGTTTA
114359735 AGGGTTAAGG
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
13 5 0.10
14 30 0.61
15 11 0.22
16 3 0.06
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.43
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:114359711 original size:15 final size:14
Alignment explanation
Indices: 114359696--114359744 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
114359686 GTGATGGGGT
*
114359696 TTAAGGTTTAGGGG
1 TTAAGGTTTAAGGG
114359710 TT-AGGTGTTAAGGG
1 TTAAGGT-TTAAGGG
*
114359724 TTTATGGTTTAAGGG
1 -TTAAGGTTTAAGGG
114359739 TTAAGG
1 TTAAGG
114359745 AATATGGGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 4 0.14
14 13 0.45
15 9 0.31
16 3 0.10
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (14 bp):
TTAAGGTTTAAGGG
Found at i:114359727 original size:22 final size:22
Alignment explanation
Indices: 114359696--114359744 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
114359686 GTGATGGGGT
114359696 TTAA-GGTTTAGGGGTT-AGGTG
1 TTAAGGGTTTAGGGGTTAAGG-G
* *
114359717 TTAAGGGTTTATGGTTTAAGGG
1 TTAAGGGTTTAGGGGTTAAGGG
114359739 TTAAGG
1 TTAAGG
114359745 AATATGGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 4 0.17
22 17 0.71
23 3 0.12
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (22 bp):
TTAAGGGTTTAGGGGTTAAGGG
Found at i:114359777 original size:14 final size:13
Alignment explanation
Indices: 114359692--114359813 Score: 50
Period size: 14 Copynumber: 8.6 Consensus size: 13
114359682 TTATGTGATG
114359692 GGGTTTAAGGTTTA
1 GGGTTT-AGGTTTA
*
114359706 GGGGTTAGGTGTTAA
1 GGGTTTAGGT-TT-A
114359721 GGGTTTATGGTTTAA
1 GGGTTTA-GGTTT-A
* **
114359736 GGGTTAAGGAATA
1 GGGTTTAGGTTTA
114359749 TGGG-TTATGAGTTTA
1 -GGGTTTA-G-GTTTA
114359764 GGGTTTAGGATTTA
1 GGGTTTAGG-TTTA
* * *
114359778 AGATTTA-GTGGTA
1 GGGTTTAGGT-TTA
*
114359791 GGGGTTAGAGGTTTA
1 -GGGTT-TAGGTTTA
114359806 GGGTTTAG
1 GGGTTTAG
114359814 ATTAATCAAT
Statistics
Matches: 80, Mismatches: 16, Indels: 25
0.66 0.13 0.21
Matches are distributed among these distances:
12 1 0.01
13 13 0.16
14 35 0.44
15 26 0.32
16 5 0.06
ACGTcount: A:0.23, C:0.00, G:0.39, T:0.39
Consensus pattern (13 bp):
GGGTTTAGGTTTA
Found at i:114364282 original size:21 final size:21
Alignment explanation
Indices: 114364258--114364305 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
114364248 GACACATAAA
114364258 GTGCCTAAAACAACACACGAG
1 GTGCCTAAAACAACACACGAG
* * *
114364279 GTGCCTGATACGACACACGAG
1 GTGCCTAAAACAACACACGAG
114364300 GTGCCT
1 GTGCCT
114364306 GATACGACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.29, G:0.25, T:0.15
Consensus pattern (21 bp):
GTGCCTAAAACAACACACGAG
Found at i:114364306 original size:21 final size:21
Alignment explanation
Indices: 114364270--114364314 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
114364260 GCCTAAAACA
114364270 ACACACGAGGTGCCTGATACG
1 ACACACGAGGTGCCTGATACG
114364291 ACACACGAGGTGCCTGATACG
1 ACACACGAGGTGCCTGATACG
114364312 ACA
1 ACA
114364315 TGTAACACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.29, G:0.27, T:0.13
Consensus pattern (21 bp):
ACACACGAGGTGCCTGATACG
Found at i:114365060 original size:38 final size:35
Alignment explanation
Indices: 114365001--114365118 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
114364991 TCAATCATGC
*
114365001 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
114365040 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
114365071 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
114365102 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
114365119 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:114365062 original size:31 final size:31
Alignment explanation
Indices: 114365024--114365118 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
114365014 CCTTTTCATA
*
114365024 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
114365055 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
114365086 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
114365117 TT
1 TT
114365119 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:114365361 original size:24 final size:24
Alignment explanation
Indices: 114365310--114365452 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
114365300 GCTTTATCAT
*
114365310 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
114365335 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
114365359 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
114365382 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
114365406 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
114365430 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
114365453 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:114365389 original size:47 final size:48
Alignment explanation
Indices: 114365310--114365451 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
114365300 GCTTTATCAT
* *
114365310 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
114365359 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
114365406 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
114365452 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:114365410 original size:71 final size:72
Alignment explanation
Indices: 114365309--114365452 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
114365299 TGCTTTATCA
*
114365309 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
114365374 GCCCTTT
66 GCCCTTT
* * **
114365381 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
114365444 AGCCCTTT
65 AGCCCTTT
114365452 T
1 T
114365453 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:114365528 original size:20 final size:20
Alignment explanation
Indices: 114365503--114365562 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
114365493 TATGATTACC
114365503 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
114365523 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
114365543 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
114365563 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:114365637 original size:25 final size:25
Alignment explanation
Indices: 114365605--114365652 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
114365595 ATACATAAAC
* * *
114365605 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
114365630 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
114365653 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:114366870 original size:27 final size:27
Alignment explanation
Indices: 114366808--114366872 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
114366798 GGGCATATTC
114366808 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
114366835 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
114366862 GTCTTTTTACC
1 GTCATTTTACC
114366873 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:114366956 original size:27 final size:26
Alignment explanation
Indices: 114366926--114366981 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
114366916 GTAAATCAAC
*
114366926 AAACCAAAGGTA-TTTTAGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
114366953 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
114366979 AAA
1 AAA
114366982 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 18 0.69
28 4 0.15
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:114367022 original size:27 final size:27
Alignment explanation
Indices: 114366934--114367072 Score: 88
Period size: 27 Copynumber: 5.0 Consensus size: 27
114366924 ACAAACCAAA
* **
114366934 GGTATTT-TAGTAATTTTGTAAACCAAT
1 GGTATTTCT-GTAATTTTGTAAATCAGG
* * *
114366961 GGTACTTCTATAATTTT-TAAAAAGTCAAG
1 GGTATTTCTGTAATTTTGT--AAA-TCAGG
*
114366990 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCTGTAATTTTGTAAATCAGG
** *
114367017 GGTATTT-TGGTAATTTTACAAAT-TGAG
1 GGTATTTCT-GTAATTTTGTAAATCAG-G
*
114367044 GGTATTTCAGTAATTTTGTAAATCGAGG
1 GGTATTTCTGTAATTTTGTAAATC-AGG
114367072 G
1 G
114367073 TAAAACAGTA
Statistics
Matches: 86, Mismatches: 16, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
26 3 0.03
27 55 0.64
28 9 0.10
29 18 0.21
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTCTGTAATTTTGTAAATCAGG
Found at i:114367073 original size:27 final size:27
Alignment explanation
Indices: 114366988--114367518 Score: 160
Period size: 27 Copynumber: 19.7 Consensus size: 27
114366978 TAAAAAGTCA
* * *
114366988 AGGGTATTTCTGTAACTTTGTAAATC-
1 AGGGTAATTCAGTAATTTTGTAAATCG
* ** ** *
114367014 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTAATTCAGTAATTTTGTAAATCG
*
114367042 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTAATTCAGTAATTTTGTAAATCG
** * *
114367069 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTAATTCAGTAATTTTGTAAATCG
** * *
114367096 AGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTAATTCAGTAATTTTGTAAATCG
** * * *
114367123 AGGGTAAAACGGTAATTCTGTAAATTG
1 AGGGTAATTCAGTAATTTTGTAAATCG
** * * *
114367150 AGGGTAAAACGGTAATTCTGTAAGTCG
1 AGGGTAATTCAGTAATTTTGTAAATCG
** *
114367177 AGGGTAAAAC-GATAATTATGTAAATC-
1 AGGGTAATTCAG-TAATTTTGTAAATCG
** * * *
114367203 AGGGGTAAAACGGTAATTATGTAAATTG
1 A-GGGTAATTCAGTAATTTTGTAAATCG
* ** * * *
114367231 TGGGTAAAACGGTAATTCTGTAAGTCG
1 AGGGTAATTCAGTAATTTTGTAAATCG
* * *
114367258 AGGGTAAAATGA-TAATTATGTAAATC-
1 AGGGT-AATTCAGTAATTTTGTAAATCG
** * * *
114367284 AGGGGTAAAACGGTAATTATGTAAAT-T
1 A-GGGTAATTCAGTAATTTTGTAAATCG
** * * * *
114367311 AGGGGTAAAACGGTAATTCTATAAATTG
1 A-GGGTAATTCAGTAATTTTGTAAATCG
* *
114367339 AGGGTAAAAT-AGTAATTCTGTAAA-CTG
1 AGGGT-AATTCAGTAATTTTGTAAATC-G
** * * *
114367366 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAATTCAGTAATTTTGTAAATCG
** * **
114367393 AGGGTAAAACGGTAATTTTACAAATCG
1 AGGGTAATTCAGTAATTTTGTAAATCG
** * * *
114367420 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAATTCAGTAATTTTGTAAATCG
* ** ** *
114367447 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTAATTCAGTAATTTTGTAAATCG
* * ** **
114367474 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTAATTCAGTAATTTTGTAAATCG
*
114367501 AGGGTATTTCAGTAATTT
1 AGGGTAATTCAGTAATTT
114367519 CACAAATTAG
Statistics
Matches: 424, Mismatches: 66, Indels: 29
0.82 0.13 0.06
Matches are distributed among these distances:
26 10 0.02
27 404 0.95
28 10 0.02
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
AGGGTAATTCAGTAATTTTGTAAATCG
Found at i:114367084 original size:54 final size:54
Alignment explanation
Indices: 114367053--114367452 Score: 482
Period size: 54 Copynumber: 7.4 Consensus size: 54
114367043 GGGTATTTCA
* * * ** *
114367053 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACG
114367107 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACG
* * * * *
114367161 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAA-TCAGGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGA-GGGTAAAACG
* * * * * * *
114367215 GTAATTATGTAAATTGTGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACG
* * * *
114367269 ATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAATT-AGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACGGTAATTCTGTAAATTGA-GGGTAAAACG
* ** *
114367323 GTAATTCTATAAATTGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACG
* ** *
114367377 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACG
114367431 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
114367453 CTTTGGTAAT
Statistics
Matches: 296, Mismatches: 44, Indels: 12
0.84 0.12 0.03
Matches are distributed among these distances:
53 3 0.01
54 290 0.98
55 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACG
Found at i:114367461 original size:54 final size:54
Alignment explanation
Indices: 114367025--114367479 Score: 423
Period size: 54 Copynumber: 8.4 Consensus size: 54
114367015 GGGGTATTTT
* * *** * * *
114367025 GGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* * * * *
114367079 AGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* * * * *
114367133 GGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* * * * * * *
114367187 GATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAATTGTGGGTAAAAC
1 GGTAATTTTATAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* * * * * * *
114367241 GGTAATTCTGTAAGTCGAGGGTAAAATGATAATTATGTAAATC-AGGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGA-GGGTAAAAC
* * * * *
114367295 GGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAAT
1 GGTAATTTTATAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* * *
114367349 AGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* ****
114367403 GGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
* *
114367457 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTATAAATCGAGGGTA
114367480 TTTCAATAAT
Statistics
Matches: 339, Mismatches: 54, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.01
54 333 0.98
55 4 0.01
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.29
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:114367479 original size:81 final size:81
Alignment explanation
Indices: 114367053--114367452 Score: 484
Period size: 81 Copynumber: 4.9 Consensus size: 81
114367043 GGGTATTTCA
* * * *
114367053 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
114367118 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * * * *
114367134 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
114367199 AATC-AGGGGTAAAACG
66 AATCGA-GGGTAAAACG
* * * * * * *
114367215 GTAATTATGTAAATTGTGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAATGATAATTATGTA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
114367280 AATC-AGGGGTAAAACG
66 AATCGA-GGGTAAAACG
* * * ** *
114367296 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATAGTAATTCTGT
1 GTAATTATGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
114367360 AAA-CTGAGGGTAAAACG
65 AAATC-GAGGGTAAAACG
* * * **
114367377 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
114367442 AATCGAGGGTA
66 AATCGAGGGTA
114367453 CTTTGGTAAT
Statistics
Matches: 284, Mismatches: 29, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
80 2 0.01
81 279 0.98
82 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:114367532 original size:27 final size:27
Alignment explanation
Indices: 114367502--114367652 Score: 162
Period size: 27 Copynumber: 5.6 Consensus size: 27
114367492 TACAGGTCGA
** * *
114367502 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTAACAAACTAG
114367529 GGGTATTTTGGTAATTTAACAAACTAG
1 GGGTATTTTGGTAATTTAACAAACTAG
* *
114367556 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTAACAAACTAG
* * * *
114367583 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTAACAAACTAG
* * *
114367610 AGGTATTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTGGTAATTTAACAAA-CTAG
114367636 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
114367653 TGTAAACCAA
Statistics
Matches: 108, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 15 0.14
27 92 0.85
28 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTAACAAACTAG
Found at i:114367587 original size:81 final size:80
Alignment explanation
Indices: 114367502--114367653 Score: 180
Period size: 81 Copynumber: 1.9 Consensus size: 80
114367492 TACAGGTCGA
** ** *
114367502 GGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTAACAAA-CTAGGGGTATTTTG
1 GGGTATTTCAGTAATTTCACAAACCAAAGGTATTTTAGTAATTTAACAAAGC-A-GGGTATTTTG
114367566 ATAATTTTACAAACTAG
64 ATAATTTTACAAACTAG
** * * * *
114367583 GGGTATTTTGGTAATTTTATAAACCAAAGGTATTTTAGTAATTTTACAAAGCAGGGTATTTTGGT
1 GGGTATTTCAGTAATTTCACAAACCAAAGGTATTTTAGTAATTTAACAAAGCAGGGTATTTTGAT
114367648 AATTTT
66 AATTTT
114367654 GTAAACCAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
80 17 0.29
81 41 0.69
82 1 0.02
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (80 bp):
GGGTATTTCAGTAATTTCACAAACCAAAGGTATTTTAGTAATTTAACAAAGCAGGGTATTTTGAT
AATTTTACAAACTAG
Found at i:114367667 original size:26 final size:26
Alignment explanation
Indices: 114367531--114367670 Score: 109
Period size: 27 Copynumber: 5.3 Consensus size: 26
114367521 CAAATTAGGG
* * * **
114367531 GTATTTTGGTAATTTAACAAACTAGGG
1 GTATTTTGGTAATTTTATAAACCA-AA
* * * **
114367558 GTATTTTGATAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTATAAACCA-AA
114367585 GTATTTTGGTAATTTTATAAACCAAA
1 GTATTTTGGTAATTTTATAAACCAAA
* * * **
114367611 GGTATTTTAGTAATTTTACAAAGCAGG
1 -GTATTTTGGTAATTTTATAAACCAAA
*
114367638 GTATTTTGGTAATTTTGTAAACCAAA
1 GTATTTTGGTAATTTTATAAACCAAA
114367664 GTATTTT
1 GTATTTT
114367671 AAACATGGAT
Statistics
Matches: 94, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
26 27 0.29
27 67 0.71
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (26 bp):
GTATTTTGGTAATTTTATAAACCAAA
Found at i:114369066 original size:15 final size:15
Alignment explanation
Indices: 114369041--114369098 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
114369031 TCATATATAT
114369041 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
114369057 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
114369072 AATAATTTCAATCAA
1 TATAAATTCAATCAA
114369087 TATAAATTCAAT
1 TATAAATTCAAT
114369099 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Done.