Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 372 of 425
Found at i:114641395 original size:11 final size:11
Alignment explanation
Indices: 114641369--114641409 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
114641359 GATTAAAATT
*
114641369 GAAATTAAAGTA
1 GAAATTGAA-TA
114641381 GAAATTGAATA
1 GAAATTGAATA
114641392 GAAATTGAATAA
1 GAAATTGAAT-A
114641404 GAAATT
1 GAAATT
114641410 TAAATATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 12 0.44
12 15 0.56
ACGTcount: A:0.56, C:0.00, G:0.17, T:0.27
Consensus pattern (11 bp):
GAAATTGAATA
Found at i:114642721 original size:26 final size:26
Alignment explanation
Indices: 114642692--114642744 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
114642682 TCAAACATGC
114642692 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
114642718 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
114642744 A
1 A
114642745 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:114644265 original size:26 final size:26
Alignment explanation
Indices: 114644229--114644338 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
114644219 CATGAAATTC
114644229 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
114644255 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
114644281 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
114644307 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
114644333 TTATCA
1 TTATCA
114644339 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:114645263 original size:44 final size:44
Alignment explanation
Indices: 114645178--114645269 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
114645168 TGTTCAGGGA
* *
114645178 TACTTCGACCTTGAGTCGATGAGGCACTATAAGTGTTGTACTGT
1 TACTTCGACCTTAAGTCGATGAGGCACTATAAGTGTCGTACTGT
* **
114645222 TACTTCGACTTTAAGTCGATGAGGCACCT-TGTGTGTCGTACTGT
1 TACTTCGACCTTAAGTCGATGAGGCA-CTATAAGTGTCGTACTGT
114645266 TACT
1 TACT
114645270 ATTACTTCGA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 40 0.95
45 2 0.05
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.36
Consensus pattern (44 bp):
TACTTCGACCTTAAGTCGATGAGGCACTATAAGTGTCGTACTGT
Found at i:114645501 original size:48 final size:48
Alignment explanation
Indices: 114645448--114645550 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
114645438 TCTCTAATGG
* **
114645448 TTGACTGTTACTGAATAATAAAGATCAATTGATCGCTATTGAAAAATA
1 TTGACTGTTACTGAATAATAAAGATAAATTGATCAATATTGAAAAATA
** ** *
114645496 TTGACTGTTACTGAATGGTATTGATAAATTGATTAATATTGAAAAATA
1 TTGACTGTTACTGAATAATAAAGATAAATTGATCAATATTGAAAAATA
114645544 TTGACTG
1 TTGACTG
114645551 ATATTGAACT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.37
Consensus pattern (48 bp):
TTGACTGTTACTGAATAATAAAGATAAATTGATCAATATTGAAAAATA
Found at i:114648102 original size:30 final size:30
Alignment explanation
Indices: 114648066--114648128 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
114648056 TTTGTGACTA
*
114648066 GCCCTTCTAAATGGCCTCACACGCCCGTGT
1 GCCCTTCGAAATGGCCTCACACGCCCGTGT
114648096 GCCCTTCGAAATGGCCTCACACGCCCGTGT
1 GCCCTTCGAAATGGCCTCACACGCCCGTGT
114648126 GCC
1 GCC
114648129 AGGTCGTGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.16, C:0.41, G:0.22, T:0.21
Consensus pattern (30 bp):
GCCCTTCGAAATGGCCTCACACGCCCGTGT
Found at i:114652223 original size:50 final size:50
Alignment explanation
Indices: 114652158--114652258 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
114652148 CAAATTTTCC
114652158 AGCACATGTATTCATAAAAATTCAGAATTTTTCTTCAATTTTACAAGTTT
1 AGCACATGTATTCATAAAAATTCAGAATTTTTCTTCAATTTTACAAGTTT
114652208 AGCACATGTATTCATAAAAATTCAGAATTTTTCTTCAATTTTACAAGTTT
1 AGCACATGTATTCATAAAAATTCAGAATTTTTCTTCAATTTTACAAGTTT
114652258 A
1 A
114652259 CATTTTAGTC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.42
Consensus pattern (50 bp):
AGCACATGTATTCATAAAAATTCAGAATTTTTCTTCAATTTTACAAGTTT
Found at i:114655292 original size:3 final size:3
Alignment explanation
Indices: 114655284--114655332 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
114655274 TAAAGTGTGC
114655284 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
114655332 A
1 A
114655333 GTGAAGTTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:114670944 original size:14 final size:14
Alignment explanation
Indices: 114670925--114670957 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
114670915 CTTAAATATT
*
114670925 TATTTTAATTGTTA
1 TATTTTAATTCTTA
114670939 TATTTTAATTCTTA
1 TATTTTAATTCTTA
114670953 TATTT
1 TATTT
114670958 GACTTAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (14 bp):
TATTTTAATTCTTA
Found at i:114674157 original size:33 final size:33
Alignment explanation
Indices: 114674120--114674184 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
114674110 TATATCAATG
*
114674120 TGCGAGTCGTAATGATGTGTGAGCTGTGTAATT
1 TGCGAGTCATAATGATGTGTGAGCTGTGTAATT
*
114674153 TGCGAGTCATAGTGATGTGTGAGCTGTGTAAT
1 TGCGAGTCATAATGATGTGTGAGCTGTGTAAT
114674185 GTGTGAGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.22, C:0.09, G:0.34, T:0.35
Consensus pattern (33 bp):
TGCGAGTCATAATGATGTGTGAGCTGTGTAATT
Found at i:114674202 original size:33 final size:33
Alignment explanation
Indices: 114674130--114674259 Score: 104
Period size: 33 Copynumber: 3.9 Consensus size: 33
114674120 TGCGAGTCGT
*
114674130 AATGATGTGTGAGCTGTGTAATTTGCGAG-T-C
1 AATGATGTGTGAGCTGTGTAATGTGCGAGCTAC
*
114674161 ATAGTGATGTGTGAGCTGTGTAATGTGTGAGCTAC
1 A-A-TGATGTGTGAGCTGTGTAATGTGCGAGCTAC
** * * *
114674196 AATGATGTACGAGTTGTGTACTGTGCAAGCTA-
1 AATGATGTGTGAGCTGTGTAATGTGCGAGCTAC
** * * *
114674228 TGTAATGTGTGAGCTGTAGTAGTGTGTGAGCT
1 AATGATGTGTGAGCTGT-GTAATGTGCGAGCT
114674260 GTGAAAATAT
Statistics
Matches: 77, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
31 1 0.01
32 12 0.16
33 60 0.78
34 2 0.03
35 2 0.03
ACGTcount: A:0.23, C:0.09, G:0.33, T:0.35
Consensus pattern (33 bp):
AATGATGTGTGAGCTGTGTAATGTGCGAGCTAC
Found at i:114678135 original size:16 final size:16
Alignment explanation
Indices: 114678106--114678157 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 16
114678096 TATATGTAAA
*
114678106 AAAAATTTA-AAATAT
1 AAAAATTTATTAATAT
114678121 AAAAATTTATTAATATGT
1 AAAAATTTATTAATA--T
114678139 ATATAAATTTATTAATAT
1 A-A-AAATTTATTAATAT
114678157 A
1 A
114678158 TGTAAAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 9 0.29
16 4 0.13
18 4 0.13
19 1 0.03
20 13 0.42
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
AAAAATTTATTAATAT
Found at i:114678158 original size:22 final size:20
Alignment explanation
Indices: 114678118--114678166 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
114678108 AAATTTAAAA
114678118 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
* *
114678138 TATATAAATTTATTAATATA
1 TATAAAAATTTATTAATATG
*
114678158 TGTAAAAAT
1 TATAAAAAT
114678167 AACTTTTACG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:114682369 original size:25 final size:25
Alignment explanation
Indices: 114682341--114682390 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
114682331 CCCATGCCAG
114682341 CCACTAGAATCGACTTTGAGGGCAT
1 CCACTAGAATCGACTTTGAGGGCAT
114682366 CCACTAGAATCGACTTTGAGGGCAT
1 CCACTAGAATCGACTTTGAGGGCAT
114682391 TTGATTAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
CCACTAGAATCGACTTTGAGGGCAT
Found at i:114683475 original size:24 final size:26
Alignment explanation
Indices: 114683448--114683498 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
114683438 CTTTTTAGAC
114683448 TAAA-TACCAAAAAAGGTCG-TTTTT
1 TAAATTACCAAAAAAGGTCGATTTTT
* *
114683472 TAAATTACGAAAATAGGTCGATTTTT
1 TAAATTACCAAAAAAGGTCGATTTTT
114683498 T
1 T
114683499 GAAAAATTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 4 0.17
25 13 0.57
26 6 0.26
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (26 bp):
TAAATTACCAAAAAAGGTCGATTTTT
Found at i:114683822 original size:29 final size:28
Alignment explanation
Indices: 114683773--114683848 Score: 107
Period size: 29 Copynumber: 2.7 Consensus size: 28
114683763 TTGAAACTCA
* * *
114683773 GAGTACTGAAAAATATTTTTGATGAGAT
1 GAGTTCTGAAAAATATCTTTGACGAGAT
114683801 GAGTTCTGAAAAAATATCTTTGACGAGAT
1 GAGTTCTG-AAAAATATCTTTGACGAGAT
*
114683830 GAGCTCTGAAAAATATCTT
1 GAGTTCTGAAAAATATCTT
114683849 GGGAATCTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 18 0.42
29 25 0.58
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (28 bp):
GAGTTCTGAAAAATATCTTTGACGAGAT
Found at i:114690390 original size:50 final size:49
Alignment explanation
Indices: 114690269--114690398 Score: 179
Period size: 50 Copynumber: 2.6 Consensus size: 49
114690259 CTGGTACGCA
* * ** * *
114690269 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTATACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
114690318 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
*
114690368 TAGTATCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
114690399 TCGAAGTTAT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 31 0.43
50 41 0.57
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:114692996 original size:44 final size:42
Alignment explanation
Indices: 114692850--114693022 Score: 127
Period size: 43 Copynumber: 4.0 Consensus size: 42
114692840 GGAAAGCTCT
*** * * *
114692850 TACGATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAA
1 TACGATGCCAACGTCCCAGATACGGTCTTACACGAAACCAAA
* * * * * *
114692892 TATCAATGAC-ACTATCGCAGATAGGGTCTTACATGAAACCAAA
1 TA-CGATGCCAAC-GTCCCAGATACGGTCTTACACGAAACCAAA
*
114692935 TACGATGCCAATGTCCCAGATACGGTCTTACACGTAAATCTCAAA
1 TACGATGCCAACGTCCCAGATACGGTCTTACACG-AAA-C-CAAA
* * *
114692980 T-CGATGCCAACGTCCCAGACT-TGGCCTTACACGAAATCAAA
1 TACGATGCCAACGTCCCAGA-TACGGTCTTACACGAAACCAAA
114693021 TA
1 TA
114693023 TCAGAAATCC
Statistics
Matches: 103, Mismatches: 20, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
41 5 0.05
42 27 0.26
43 37 0.36
44 28 0.27
45 6 0.06
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (42 bp):
TACGATGCCAACGTCCCAGATACGGTCTTACACGAAACCAAA
Found at i:114696775 original size:39 final size:38
Alignment explanation
Indices: 114696728--114696806 Score: 149
Period size: 39 Copynumber: 2.1 Consensus size: 38
114696718 TTCAGCACCT
114696728 ACAACTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC
1 ACAACTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC
114696766 ACAAGCTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC
1 ACAA-CTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC
114696805 AC
1 AC
114696807 CAGGTTCCGC
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 4 0.10
39 36 0.90
ACGTcount: A:0.19, C:0.42, G:0.24, T:0.15
Consensus pattern (38 bp):
ACAACTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC
Found at i:114697418 original size:2 final size:2
Alignment explanation
Indices: 114697413--114697437 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
114697403 TTAAAAAAAA
114697413 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
114697438 CTCAATGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114699540 original size:27 final size:27
Alignment explanation
Indices: 114699509--114699561 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
114699499 GGCCAAATTC
*
114699509 TATATGAATAATTTTA-AAGAAAATATA
1 TATAT-AATAAATTTAGAAGAAAATATA
114699536 TATATAATAAATTTAGAAGAAAATAT
1 TATATAATAAATTTAGAAGAAAATAT
114699562 TTACATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.36
Consensus pattern (27 bp):
TATATAATAAATTTAGAAGAAAATATA
Found at i:114699569 original size:27 final size:26
Alignment explanation
Indices: 114699515--114699569 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
114699505 ATTCTATATG
* *
114699515 AATAATTTTAAAGAAAATATATATAT
1 AATAAATTTAAAGAAAATATATACAT
*
114699541 AATAAATTTAGAAGAAAATATTTACAT
1 AATAAATTTA-AAGAAAATATATACAT
114699568 AA
1 AA
114699570 AAGGATGTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (26 bp):
AATAAATTTAAAGAAAATATATACAT
Found at i:114705115 original size:18 final size:18
Alignment explanation
Indices: 114705089--114705125 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
114705079 AAATTTGAAA
114705089 TACTATTTGATATTTTAT
1 TACTATTTGATATTTTAT
* *
114705107 TACTGTTTGATTTTTTAT
1 TACTATTTGATATTTTAT
114705125 T
1 T
114705126 TCATTTATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.05, G:0.08, T:0.65
Consensus pattern (18 bp):
TACTATTTGATATTTTAT
Found at i:114705143 original size:26 final size:26
Alignment explanation
Indices: 114705113--114705163 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
114705103 TTATTACTGT
114705113 TTGATTTTTTATTTCATTTATGATGC
1 TTGATTTTTTATTTCATTTATGATGC
114705139 TTGATTTTTTATTTCATTTATGATG
1 TTGATTTTTTATTTCATTTATGATG
114705164 TTTGCATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.06, G:0.12, T:0.63
Consensus pattern (26 bp):
TTGATTTTTTATTTCATTTATGATGC
Found at i:114706774 original size:18 final size:18
Alignment explanation
Indices: 114706751--114706792 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
114706741 GCCATGTGCA
*
114706751 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
114706769 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
114706787 TTTCCT
1 TATCCT
114706793 TTTCCTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:114709353 original size:27 final size:27
Alignment explanation
Indices: 114709323--114709412 Score: 112
Period size: 27 Copynumber: 3.3 Consensus size: 27
114709313 GACTGCTAGA
* *
114709323 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGATAGAGCCACCAGAT
* *
114709350 ACAGATAATCGTGGTAAAGCCACCAGA-
1 ACAGATAAT-GTGATAGAGCCACCAGAT
114709377 ACAGATATATGTGATAGAGCCACCAGAT
1 ACAGATA-ATGTGATAGAGCCACCAGAT
114709405 -CAGATAAT
1 ACAGATAAT
114709413 TGTGGCATAG
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
26 2 0.04
27 37 0.69
28 15 0.28
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.19
Consensus pattern (27 bp):
ACAGATAATGTGATAGAGCCACCAGAT
Found at i:114709383 original size:54 final size:54
Alignment explanation
Indices: 114709320--114709429 Score: 159
Period size: 54 Copynumber: 2.0 Consensus size: 54
114709310 CATGACTGCT
* *
114709320 AGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGTAAAGCCACC
1 AGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAAAGCCACC
* * *
114709374 AGAACAGATATATGTGATAGAGCCACCAGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAAGCCACC
114709428 AG
1 AG
114709430 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (54 bp):
AGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAAAGCCACC
Found at i:114709424 original size:27 final size:27
Alignment explanation
Indices: 114709324--114709429 Score: 99
Period size: 27 Copynumber: 3.9 Consensus size: 27
114709314 ACTGCTAGAA
*
114709324 CAGATAA-TGTGACAGAGTCACCAGAT
1 CAGATAATTGTGACAGAGCCACCAGAT
* ** * *
114709350 ACAGATAATCGTGGTAAAGCCACCAGAA
1 -CAGATAATTGTGACAGAGCCACCAGAT
*
114709378 CAGAT-ATATGTGATAGAGCCACCAGAT
1 CAGATAAT-TGTGACAGAGCCACCAGAT
* *
114709405 CAGATAATTGTGGCATAGCCACCAG
1 CAGATAATTGTGACAGAGCCACCAG
114709430 GACGCTTCCT
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
26 2 0.03
27 46 0.73
28 15 0.24
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATAATTGTGACAGAGCCACCAGAT
Found at i:114710868 original size:25 final size:24
Alignment explanation
Indices: 114710835--114710891 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 24
114710825 AACTCTTGCT
114710835 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCAGCTCCTAAATCTTCT-C
114710861 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCTTCTC
114710885 CCTTATC
1 CCTTATC
114710892 CCCTCCTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 8 0.26
25 19 0.61
26 4 0.13
ACGTcount: A:0.19, C:0.39, G:0.05, T:0.37
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTCTC
Found at i:114710897 original size:24 final size:25
Alignment explanation
Indices: 114710835--114710898 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
114710825 AACTCTTGCT
*
114710835 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCACCTCCTAAATCTTCTCC
*
114710861 CCTTATCAGCTCCTAAATCTTCT-C
1 CCTTATCACCTCCTAAATCTTCTCC
*
114710885 CCTTATCCCCTCCT
1 CCTTATCACCTCCT
114710899 TACTCAATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 13 0.36
25 19 0.53
26 4 0.11
ACGTcount: A:0.17, C:0.42, G:0.05, T:0.36
Consensus pattern (25 bp):
CCTTATCACCTCCTAAATCTTCTCC
Found at i:114713404 original size:126 final size:126
Alignment explanation
Indices: 114713179--114713409 Score: 401
Period size: 126 Copynumber: 1.8 Consensus size: 126
114713169 TTATAACCTC
* *
114713179 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGTTA
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTCCAGAAATTTTGCTA
*
114713244 ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAATGTCTACTCAGAATT
66 ACAATGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAATGTCTACTCAGAATT
*
114713305 ATTTTTGC-ACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCT
1 ATTTTT-CTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTCCAGAAATTTTGCT
*
114713369 GACAATGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTT
65 AACAATGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTT
114713410 AGCGTCCATG
Statistics
Matches: 99, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
126 98 0.99
127 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTCCAGAAATTTTGCTA
ACAATGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAATGTCTACTCAGAATT
Found at i:114713433 original size:77 final size:78
Alignment explanation
Indices: 114713333--114713484 Score: 234
Period size: 77 Copynumber: 2.0 Consensus size: 78
114713323 GTAGCAAAAG
* *
114713333 AGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTGACAATGCATCCTGCTTGAAGCG-TTTTC
1 AGCGTCCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAATGCATCCTGCTTGAAACGTTTTTC
*
114713397 GGCACTATTTGTT
66 GACACTATTTGTT
* * * *
114713410 AGCGTCCATGTGAGAGTTTTTTCCAGAAATTTTGCTGACAGTGCATCCTGTTTGAAACGTTTTTC
1 AGCGTCCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAATGCATCCTGCTTGAAACGTTTTTC
114713475 GACACTATTT
66 GACACTATTT
114713485 TTCCAGAAAC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
77 53 0.79
78 14 0.21
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (78 bp):
AGCGTCCACGTGAGAGCTTTTTCCAGAAATTTTGCTGACAATGCATCCTGCTTGAAACGTTTTTC
GACACTATTTGTT
Found at i:114714025 original size:15 final size:15
Alignment explanation
Indices: 114714002--114714031 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
114713992 ACAAAACCCT
*
114714002 AACCCTAACCCTAAA
1 AACCATAACCCTAAA
114714017 AACCATAACCCTAAA
1 AACCATAACCCTAAA
114714032 TCAATTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.37, G:0.00, T:0.13
Consensus pattern (15 bp):
AACCATAACCCTAAA
Found at i:114714498 original size:2 final size:2
Alignment explanation
Indices: 114714491--114714531 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
114714481 TTTAGCTCAA
114714491 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114714532 AAAAGAGGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:114715064 original size:18 final size:17
Alignment explanation
Indices: 114715032--114715065 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
114715022 GTTTGTTATA
*
114715032 TATCAAATTAGATTAGT
1 TATCAAATTACATTAGT
114715049 TATCAATATTACATTAG
1 TATCAA-ATTACATTAG
114715066 CATAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (17 bp):
TATCAAATTACATTAGT
Found at i:114716165 original size:2 final size:2
Alignment explanation
Indices: 114716158--114716188 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
114716148 TTTTAAAAAC
114716158 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114716189 GCTTTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114718249 original size:2 final size:2
Alignment explanation
Indices: 114718242--114718280 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
114718232 TGTTTGTTTT
*
114718242 TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
114718281 AATGATTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:114721040 original size:3 final size:3
Alignment explanation
Indices: 114721034--114721075 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
114721024 AAAGAAAAAA
*
114721034 AAG AAG AAG AAG -AG AAG AAGG AAG -AG AAG AAG AAG GAG AAG A
1 AAG AAG AAG AAG AAG AAG AA-G AAG AAG AAG AAG AAG AAG AAG A
114721076 GGAAAAATGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 4 0.12
3 27 0.79
4 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:114721057 original size:12 final size:11
Alignment explanation
Indices: 114721035--114721075 Score: 64
Period size: 12 Copynumber: 3.5 Consensus size: 11
114721025 AAGAAAAAAA
114721035 AGAAGAAGAAG
1 AGAAGAAGAAG
114721046 AGAAGAAGGAAG
1 AGAAGAA-GAAG
114721058 AGAAGAAGAAGG
1 AGAAGAAGAA-G
114721070 AGAAGA
1 AGAAGA
114721076 GGAAAAATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (11 bp):
AGAAGAAGAAG
Found at i:114721723 original size:59 final size:59
Alignment explanation
Indices: 114721624--114721762 Score: 224
Period size: 59 Copynumber: 2.4 Consensus size: 59
114721614 TGTTTTTGTT
* * *
114721624 TACAAATTGCTTAACACTTGGTATACATGGCTGCTGGTTAGAAAAGATAACAATTGATA
1 TACAAATTGCTTAACAGTTGGTATACATGGCTACTAGTTAGAAAAGATAACAATTGATA
* * *
114721683 TACAAATTGCTGAACAGTTGGTATACATGGCTACTAGTTAGAAAAGATAACAGTTGGTA
1 TACAAATTGCTTAACAGTTGGTATACATGGCTACTAGTTAGAAAAGATAACAATTGATA
114721742 TACAAATTGCTTAACAGTTGG
1 TACAAATTGCTTAACAGTTGG
114721763 ATAACAAATA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 73 1.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (59 bp):
TACAAATTGCTTAACAGTTGGTATACATGGCTACTAGTTAGAAAAGATAACAATTGATA
Found at i:114723003 original size:43 final size:42
Alignment explanation
Indices: 114722894--114723071 Score: 191
Period size: 43 Copynumber: 4.2 Consensus size: 42
114722884 TAAAAAAAAC
* * * *
114722894 TCATTGCATGCATATTAAAAAATAGGCAACA-CATT--AATAG
1 TCATTGCATGCATATT-AAAAATAGTCAACAGCTTTCCAACAA
* *
114722934 TTATTACATGCATATTAAAAATTAGTCAACAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAA-TAGTCAACAGCTTTCCAACAA
* *
114722977 TTATTGCATGCATATTACAAAATAGTCAACAACTTTCCAACAA
1 TCATTGCATGCATATTA-AAAATAGTCAACAGCTTTCCAACAA
* * * *
114723020 TCATTACATACATATTAAAAAAAGTCAATAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAATAGTCAACAGCTTTCCAACAA
*
114723062 TCAGTGCATG
1 TCATTGCATG
114723072 TGGTCAGCAA
Statistics
Matches: 116, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 5 0.04
40 22 0.19
41 3 0.03
42 29 0.25
43 53 0.46
44 4 0.03
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.30
Consensus pattern (42 bp):
TCATTGCATGCATATTAAAAATAGTCAACAGCTTTCCAACAA
Found at i:114723730 original size:2 final size:2
Alignment explanation
Indices: 114723723--114723755 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
114723713 AAACAACATA
114723723 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114723756 AATAGAGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114724888 original size:47 final size:48
Alignment explanation
Indices: 114724817--114724937 Score: 181
Period size: 47 Copynumber: 2.5 Consensus size: 48
114724807 AATAAACATC
*
114724817 ATGGCAGATATACACAATAAACATCAGTTTGATAAT-GCATTCATACA
1 ATGGCAGATATACACAATAAACATCAATTTGATAATCGCATTCATACA
*
114724864 ATGGCAGATATACACAATACACATCAATTTGATAATCGCATTCATACA
1 ATGGCAGATATACACAATAAACATCAATTTGATAATCGCATTCATACA
* * * *
114724912 ATGGTAGAAACAAACAATAAACATCA
1 ATGGCAGATATACACAATAAACATCA
114724938 TGCACATGGC
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
47 34 0.52
48 32 0.48
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (48 bp):
ATGGCAGATATACACAATAAACATCAATTTGATAATCGCATTCATACA
Found at i:114724929 original size:48 final size:47
Alignment explanation
Indices: 114724830--114724937 Score: 153
Period size: 48 Copynumber: 2.3 Consensus size: 47
114724820 GCAGATATAC
* * * *
114724830 ACAATAAACATCAGTTTGATAATGCATTCATACAATGGCAGATATAC
1 ACAATAAACATCAATTTGATAATGCATTCATACAATGGCAGAAACAA
* *
114724877 ACAATACACATCAATTTGATAATCGCATTCATACAATGGTAGAAACAA
1 ACAATAAACATCAATTTGATAAT-GCATTCATACAATGGCAGAAACAA
114724925 ACAATAAACATCA
1 ACAATAAACATCA
114724938 TGCACATGGC
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 21 0.40
48 32 0.60
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.25
Consensus pattern (47 bp):
ACAATAAACATCAATTTGATAATGCATTCATACAATGGCAGAAACAA
Found at i:114725001 original size:6 final size:6
Alignment explanation
Indices: 114724992--114725117 Score: 180
Period size: 6 Copynumber: 21.0 Consensus size: 6
114724982 ATCTAGATCG
* * * * * ** *
114724992 AAATCA AAATCA AATTCT AAATCT AAATCG AGATCA AAATTG GAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
114725040 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
114725088 AAATCA AAATCA AAATCA AAATCA AAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA
114725118 GTGAGTGTTT
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 107 1.00
ACGTcount: A:0.61, C:0.16, G:0.03, T:0.20
Consensus pattern (6 bp):
AAATCA
Found at i:114725150 original size:12 final size:12
Alignment explanation
Indices: 114725129--114725187 Score: 82
Period size: 12 Copynumber: 4.9 Consensus size: 12
114725119 TGAGTGTTTT
*
114725129 AAAATTGAAATC
1 AAAATCGAAATC
114725141 AAAATCGAAATC
1 AAAATCGAAATC
114725153 AAAATCGAAATC
1 AAAATCGAAATC
* *
114725165 AGAATCGAAATT
1 AAAATCGAAATC
*
114725177 AAAATTGAAAT
1 AAAATCGAAAT
114725188 AGAAACAACC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.22
Consensus pattern (12 bp):
AAAATCGAAATC
Found at i:114725156 original size:24 final size:24
Alignment explanation
Indices: 114725129--114725187 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
114725119 TGAGTGTTTT
114725129 AAAATTGAAATCAAAATCGAAATC
1 AAAATTGAAATCAAAATCGAAATC
* * *
114725153 AAAATCGAAATCAGAATCGAAATT
1 AAAATTGAAATCAAAATCGAAATC
114725177 AAAATTGAAAT
1 AAAATTGAAAT
114725188 AGAAACAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.22
Consensus pattern (24 bp):
AAAATTGAAATCAAAATCGAAATC
Found at i:114725664 original size:21 final size:21
Alignment explanation
Indices: 114725638--114725677 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
114725628 AACGTGGCAA
114725638 GTTAACTTGCCACATCAACTG
1 GTTAACTTGCCACATCAACTG
*
114725659 GTTAACTTGCCACGTCAAC
1 GTTAACTTGCCACATCAAC
114725678 AATCCCGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (21 bp):
GTTAACTTGCCACATCAACTG
Found at i:114728675 original size:14 final size:14
Alignment explanation
Indices: 114728656--114728695 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
114728646 TAGTTTCATA
114728656 AATTACAATATGTT
1 AATTACAATATGTT
114728670 AATTACAATATGTT
1 AATTACAATATGTT
* *
114728684 AACTATAATATG
1 AATTACAATATG
114728696 CTATTGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (14 bp):
AATTACAATATGTT
Found at i:114732594 original size:13 final size:14
Alignment explanation
Indices: 114732578--114732613 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
114732568 CAATCTCATA
114732578 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
114732591 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
114732604 TCTC-ATTTCA
1 TCTCAATTTCA
114732614 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:114732603 original size:18 final size:19
Alignment explanation
Indices: 114732565--114732605 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
114732555 TGGTTCATGT
114732565 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
114732584 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
114732602 TTTC
1 TTTC
114732606 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:114733249 original size:15 final size:15
Alignment explanation
Indices: 114733224--114733281 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
114733214 TCATATATAT
114733224 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
114733240 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
114733255 AATAATTTCAATCAA
1 TATAAATTCAATCAA
114733270 TATAAATTCAAT
1 TATAAATTCAAT
114733282 AAAACAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:114733266 original size:30 final size:28
Alignment explanation
Indices: 114733227--114733285 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
114733217 TATATATTAT
114733227 ATAATTCAATCAATATAAATTCAATCAAA
1 ATAATTCAATCAATATAAATTCAAT-AAA
114733256 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAATCAATATAAATTCAATAAA
114733285 A
1 A
114733286 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 8 0.28
30 21 0.72
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:114733451 original size:2 final size:2
Alignment explanation
Indices: 114733446--114733509 Score: 112
Period size: 2 Copynumber: 32.5 Consensus size: 2
114733436 TCACACACGC
114733446 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
114733488 AT AT AT AT AT TT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
114733510 ATTCAATTTA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 58 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114733539 original size:15 final size:17
Alignment explanation
Indices: 114733519--114733557 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
114733509 AATTCAATTT
114733519 AATTCAATCA-ATA-TA
1 AATTCAATCACATACTA
114733534 AATTC-ATCACATACTA
1 AATTCAATCACATACTA
114733550 AATT-AATC
1 AATTCAATC
114733558 CATTTCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.19
15 8 0.38
16 9 0.43
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (17 bp):
AATTCAATCACATACTA
Found at i:114735386 original size:74 final size:74
Alignment explanation
Indices: 114735298--114735446 Score: 219
Period size: 74 Copynumber: 2.0 Consensus size: 74
114735288 GGCGTTTTCT
* * * *
114735298 AAAATGTTAAACAAAACGACGTCGTTTTACATGAGCTTCATTGGCAGTAGCGGCGTTTTTCC-AA
1 AAAATGTTAAACAAAACAACGTCGTTTTACATGAGCTTCAATGACAGTAGCGGCG-CTTTCCTAA
114735362 AAACGCCGCA
65 AAACGCCGCA
** *
114735372 AAAATGTTAAACAAAACAACGTCGTTTTATGTGAGCTTCAATGACATTAGCGGCGCTTTCCTAAA
1 AAAATGTTAAACAAAACAACGTCGTTTTACATGAGCTTCAATGACAGTAGCGGCGCTTTCCTAAA
114735437 AACGCCGCA
66 AACGCCGCA
114735446 A
1 A
114735447 TAGCTCGCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 5 0.07
74 62 0.93
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (74 bp):
AAAATGTTAAACAAAACAACGTCGTTTTACATGAGCTTCAATGACAGTAGCGGCGCTTTCCTAAA
AACGCCGCA
Found at i:114736272 original size:25 final size:24
Alignment explanation
Indices: 114736222--114736273 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
114736212 TAACTTATTT
**
114736222 TTTAAATGAATTTAAAATTTTCTA
1 TTTAAATGAATTTAAAATTTAATA
* *
114736246 TTTAAACTGATTTTTAAATTTAATA
1 TTTAAA-TGAATTTAAAATTTAATA
114736271 TTT
1 TTT
114736274 TTATAGGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (24 bp):
TTTAAATGAATTTAAAATTTAATA
Found at i:114736917 original size:9 final size:9
Alignment explanation
Indices: 114736903--114736942 Score: 80
Period size: 9 Copynumber: 4.4 Consensus size: 9
114736893 AGGTGAAATT
114736903 TGATTTTGA
1 TGATTTTGA
114736912 TGATTTTGA
1 TGATTTTGA
114736921 TGATTTTGA
1 TGATTTTGA
114736930 TGATTTTGA
1 TGATTTTGA
114736939 TGAT
1 TGAT
114736943 GTTGCTATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.55
Consensus pattern (9 bp):
TGATTTTGA
Found at i:114738685 original size:46 final size:46
Alignment explanation
Indices: 114738629--114738804 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
114738619 TGGTTGAGCA
* *
114738629 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
114738675 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCAT-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATG
*
114738723 T-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
114738768 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
114738805 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.60
47 30 0.28
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:114738790 original size:93 final size:93
Alignment explanation
Indices: 114738626--114738796 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
114738616 GGATGGTTGA
* * *
114738626 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
114738691 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
114738719 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
114738784 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
114738797 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:114740563 original size:7 final size:7
Alignment explanation
Indices: 114740553--114740615 Score: 63
Period size: 7 Copynumber: 9.0 Consensus size: 7
114740543 TAAGGGTTAA
114740553 TTAGGGT
1 TTAGGGT
114740560 TTAGGGT
1 TTAGGGT
*
114740567 TTAGAGT
1 TTAGGGT
*
114740574 TTGGGGT
1 TTAGGGT
*
114740581 TTAAGGT
1 TTAGGGT
**
114740588 TTATAGT
1 TTAGGGT
114740595 TTAGGGT
1 TTAGGGT
*
114740602 TTATGGT
1 TTAGGGT
*
114740609 ATAGGGT
1 TTAGGGT
114740616 CAGGGTCTTA
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:114740580 original size:21 final size:21
Alignment explanation
Indices: 114740553--114740604 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
114740543 TAAGGGTTAA
*
114740553 TTAGGGTTTAGGGTTTAGAGT
1 TTAGGGTTTAAGGTTTAGAGT
* *
114740574 TTGGGGTTTAAGGTTTATAGT
1 TTAGGGTTTAAGGTTTAGAGT
114740595 TTAGGGTTTA
1 TTAGGGTTTA
114740605 TGGTATAGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (21 bp):
TTAGGGTTTAAGGTTTAGAGT
Found at i:114740839 original size:7 final size:7
Alignment explanation
Indices: 114740819--114740914 Score: 59
Period size: 7 Copynumber: 13.6 Consensus size: 7
114740809 GTTAGGGAGA
114740819 TTTAGGG
1 TTTAGGG
114740826 TTTTAGGG
1 -TTTAGGG
114740834 TTTAGGG
1 TTTAGGG
**
114740841 ACT-GGG
1 TTTAGGG
*
114740847 TTTTGTGG
1 TTTAG-GG
*
114740855 TTTATGG
1 TTTAGGG
*
114740862 TATAGGG
1 TTTAGGG
* *
114740869 CTTATGG
1 TTTAGGG
*
114740876 TTTGGGG
1 TTTAGGG
*
114740883 TTTGGGG
1 TTTAGGG
*
114740890 TTTGGGG
1 TTTAGGG
*
114740897 TTTAGTG
1 TTTAGGG
*
114740904 TTTAGTG
1 TTTAGGG
114740911 TTTA
1 TTTA
114740915 ATTTTGGAAT
Statistics
Matches: 70, Mismatches: 16, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
6 4 0.06
7 54 0.77
8 12 0.17
ACGTcount: A:0.11, C:0.02, G:0.40, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:114741855 original size:24 final size:24
Alignment explanation
Indices: 114741825--114741870 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
114741815 GTCAGGTAAC
114741825 TTTAATTTCTAAGTCTCTGTTTCT
1 TTTAATTTCTAAGTCTCTGTTTCT
*
114741849 TTTAATTTCTAAGTCTTTGTTT
1 TTTAATTTCTAAGTCTCTGTTT
114741871 ACAAATACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.17, C:0.13, G:0.09, T:0.61
Consensus pattern (24 bp):
TTTAATTTCTAAGTCTCTGTTTCT
Found at i:114742239 original size:2 final size:2
Alignment explanation
Indices: 114742232--114742268 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
114742222 GTCTTTGTTG
114742232 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114742269 AGGGGTAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:114742675 original size:24 final size:24
Alignment explanation
Indices: 114742612--114742680 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 24
114742602 TTTGTGACTG
*
114742612 TGAAAATCGTATTATAATAATGTTA
1 TGAAAATTGTATTATAAT-ATGTTA
**
114742637 T-ACTATCT-TATTTATAATATGTTA
1 TGAAAAT-TGTA-TTATAATATGTTA
114742661 TGAAAATTGTATTATAATAT
1 TGAAAATTGTATTATAATAT
114742681 ACTTTGGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
24 22 0.63
25 13 0.37
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.46
Consensus pattern (24 bp):
TGAAAATTGTATTATAATATGTTA
Found at i:114744405 original size:69 final size:70
Alignment explanation
Indices: 114744282--114744415 Score: 216
Period size: 69 Copynumber: 1.9 Consensus size: 70
114744272 GACTCAGATC
* *
114744282 CATGGTTCAAATAAGTCACTTACCTTTTAAGTACTAAATTGGACAAAAATCTAAATTCATGTGTT
1 CATGGTTCAAATAAGTCACTTACCTTTTAAGTACTAAATTGGAAAAAAATCTAAATTCAAGTGTT
114744347 AGGTT
66 AGGTT
* * *
114744352 CATGGTTCAAATAAGTCATTTACC-TTTAAGTACTTATTTGGAAAAAAATCTAAATTCAAGTGTT
1 CATGGTTCAAATAAGTCACTTACCTTTTAAGTACTAAATTGGAAAAAAATCTAAATTCAAGTGTT
114744416 GATTACTTAA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (70 bp):
CATGGTTCAAATAAGTCACTTACCTTTTAAGTACTAAATTGGAAAAAAATCTAAATTCAAGTGTT
AGGTT
Found at i:114745586 original size:9 final size:9
Alignment explanation
Indices: 114745572--114745688 Score: 108
Period size: 9 Copynumber: 12.3 Consensus size: 9
114745562 TCTTAAAAAA
114745572 TTACATAAC
1 TTACATAAC
114745581 TTACATAAC
1 TTACATAAC
* *
114745590 TCATATAAC
1 TTACATAAC
*
114745599 TTACATAAT
1 TTACATAAC
114745608 TTACATAACAAC
1 TTACAT---AAC
*
114745620 TTATATAAC
1 TTACATAAC
*
114745629 TCACATAAC
1 TTACATAAC
*
114745638 TTACATAAT
1 TTACATAAC
114745647 TTACATAAC
1 TTACATAAC
*
114745656 TCACATAAC
1 TTACATAAC
*
114745665 GTACATAACAAC
1 TTACAT---AAC
114745677 TTACATAAC
1 TTACATAAC
114745686 TTA
1 TTA
114745689 ACTAATACAT
Statistics
Matches: 86, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
9 71 0.83
12 15 0.17
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:114745611 original size:27 final size:27
Alignment explanation
Indices: 114745574--114745673 Score: 119
Period size: 27 Copynumber: 3.6 Consensus size: 27
114745564 TTAAAAAATT
* *
114745574 ACATAACTTACATAACTCATATAACTT
1 ACATAACTTACATAACTTATATAACTC
*
114745601 ACATAATTTACATAACAACTTATATAACTC
1 ACATAACTTACAT---AACTTATATAACTC
* *
114745631 ACATAACTTACATAATTTACATAACTC
1 ACATAACTTACATAACTTATATAACTC
*
114745658 ACATAACGTACATAAC
1 ACATAACTTACATAAC
114745674 AACTTACATA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
27 38 0.61
30 24 0.39
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (27 bp):
ACATAACTTACATAACTTATATAACTC
Found at i:114745628 original size:39 final size:39
Alignment explanation
Indices: 114745578--114745655 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
114745568 AAAATTACAT
*
114745578 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
*
114745617 AACTTATATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
114745656 TCACATAACG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:114745662 original size:57 final size:57
Alignment explanation
Indices: 114745574--114745686 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
114745564 TTAAAAAATT
* * ** *
114745574 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTATATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
114745631 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
114745687 TAACTAATAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:114745678 original size:39 final size:36
Alignment explanation
Indices: 114745573--114745684 Score: 120
Period size: 39 Copynumber: 2.9 Consensus size: 36
114745563 CTTAAAAAAT
114745573 TACATAACTTACATAACT-CATATAACTTACATAATT
1 TACATAACTTACATAACTACATA-AACTTACATAATT
*
114745609 TACATAACAACTTATATAACTCACAT-AACTTACATAATT
1 TACAT---AACTTACATAACT-ACATAAACTTACATAATT
*
114745648 TACATAACTCACATAACGTACATAACAACTTACATAA
1 TACATAACTTACATAAC-TACAT-A-AACTTACATAA
114745685 CTTAACTAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
36 19 0.30
37 1 0.02
39 41 0.64
41 3 0.05
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.31
Consensus pattern (36 bp):
TACATAACTTACATAACTACATAAACTTACATAATT
Found at i:114745788 original size:16 final size:17
Alignment explanation
Indices: 114745751--114745789 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
114745741 GTTCAAATTT
114745751 CATAACTTACATAATCAA
1 CATAACTTACATAA-CAA
114745769 CATAACTTACATAA-AA
1 CATAACTTACATAACAA
114745785 CATAA
1 CATAA
114745790 ATATATATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 7 0.33
18 14 0.67
ACGTcount: A:0.54, C:0.21, G:0.00, T:0.26
Consensus pattern (17 bp):
CATAACTTACATAACAA
Found at i:114751228 original size:21 final size:21
Alignment explanation
Indices: 114751202--114751249 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
114751192 TCAACTTAGA
*
114751202 GCGGAGGCAGCAGCGCGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
114751223 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
114751244 GCGGAG
1 GCGGAG
114751250 CAGAACAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.58, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:114751669 original size:43 final size:43
Alignment explanation
Indices: 114751543--114751701 Score: 159
Period size: 43 Copynumber: 3.7 Consensus size: 43
114751533 ACTGGGCAAA
* * * *
114751543 TTAGCGGCGTTTCTTAAAAAAGCACCGCTAAAAGT-ACTG-CAAA
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCTCTGTC--T
*
114751586 TTAGCGGC-TTTTTT--AAAAGCGCCGCTAAAAGTGCT-GGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGT-CTCTGTCT
*
114751626 TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCTCTGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCTCTGTCT
* *
114751669 TTAGCGGCGCTTTTTTCAAAAAAACACCGCTAA
1 TTAGCGGCG-TTTTTT-AAAAAAGCGCCGCTAA
114751702 TTTTACCGGC
Statistics
Matches: 97, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
40 25 0.26
41 7 0.07
42 8 0.08
43 38 0.39
44 6 0.06
45 13 0.13
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCTCTGTCT
Found at i:114751725 original size:34 final size:35
Alignment explanation
Indices: 114751668--114751780 Score: 192
Period size: 35 Copynumber: 3.3 Consensus size: 35
114751658 AGTCTCTGTC
* *
114751668 TTTAGCGGCGCTTTTTTCAAAAAAACACCGCTAAT
1 TTTACCGGCGCTTTTTTCAAAAAAACGCCGCTAAT
114751703 TTTACCGGCGCTTTTTTC-AAAAAACGCCGCTAAT
1 TTTACCGGCGCTTTTTTCAAAAAAACGCCGCTAAT
*
114751737 TTTACCGGCACTTTTTTCAAAAAAACGCCGCTAAT
1 TTTACCGGCGCTTTTTTCAAAAAAACGCCGCTAAT
114751772 TTTACCGGC
1 TTTACCGGC
114751781 CTTACATATA
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
34 32 0.43
35 42 0.57
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (35 bp):
TTTACCGGCGCTTTTTTCAAAAAAACGCCGCTAAT
Found at i:114755543 original size:38 final size:38
Alignment explanation
Indices: 114755500--114755577 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
114755490 GCATGCACAA
*
114755500 AAAATTTGTTTTAATAAATTATCAACATCAAATATGAT
1 AAAATTTGTTTTAATAAATTACCAACATCAAATATGAT
114755538 AAAATTTGTTTTAATAAATTACCAACATCAAATATGAT
1 AAAATTTGTTTTAATAAATTACCAACATCAAATATGAT
114755576 AA
1 AA
114755578 GTATTAGGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (38 bp):
AAAATTTGTTTTAATAAATTACCAACATCAAATATGAT
Found at i:114757198 original size:9 final size:9
Alignment explanation
Indices: 114757184--114757251 Score: 82
Period size: 9 Copynumber: 7.6 Consensus size: 9
114757174 ATAAGCATAA
114757184 AATTAACCG
1 AATTAACCG
*
114757193 AATTAATCG
1 AATTAACCG
114757202 AATTAACCG
1 AATTAACCG
*
114757211 AATTATCCG
1 AATTAACCG
*
114757220 AATTAACCA
1 AATTAACCG
* *
114757229 AATTAATCT
1 AATTAACCG
*
114757238 AGTTAACCG
1 AATTAACCG
114757247 AATTA
1 AATTA
114757252 TTTGTATAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:114757207 original size:18 final size:18
Alignment explanation
Indices: 114757184--114757251 Score: 93
Period size: 18 Copynumber: 3.8 Consensus size: 18
114757174 ATAAGCATAA
114757184 AATTAACCGAATTAATCG
1 AATTAACCGAATTAATCG
114757202 AATTAACCGAATT-ATCCG
1 AATTAACCGAATTAAT-CG
* *
114757220 AATTAACCAAATTAATCT
1 AATTAACCGAATTAATCG
*
114757238 AGTTAACCGAATTA
1 AATTAACCGAATTA
114757252 TTTGTATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
17 2 0.05
18 40 0.91
19 2 0.05
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (18 bp):
AATTAACCGAATTAATCG
Found at i:114757226 original size:36 final size:36
Alignment explanation
Indices: 114757184--114757252 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
114757174 ATAAGCATAA
*
114757184 AATTAACCGAATTAATCGAATTAACCGAATTATCCG
1 AATTAACCAAATTAATCGAATTAACCGAATTATCCG
* *
114757220 AATTAACCAAATTAATCTAGTTAACCGAATTAT
1 AATTAACCAAATTAATCGAATTAACCGAATTAT
114757253 TTGTATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.30
Consensus pattern (36 bp):
AATTAACCAAATTAATCGAATTAACCGAATTATCCG
Found at i:114757286 original size:5 final size:6
Alignment explanation
Indices: 114757271--114757311 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
114757261 AATTATATGT
*
114757271 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
114757312 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:114764232 original size:17 final size:16
Alignment explanation
Indices: 114764199--114764234 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
114764189 ATCACAAGAG
*
114764199 AGAAAAAAAAATGAAA
1 AGAAAAAAAAATAAAA
114764215 AGAAAAAAAAAGTAAAA
1 AGAAAAAAAAA-TAAAA
114764232 AGA
1 AGA
114764235 GATAAAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.06
Consensus pattern (16 bp):
AGAAAAAAAAATAAAA
Found at i:114765728 original size:16 final size:17
Alignment explanation
Indices: 114765705--114765742 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
114765695 AATAAACAAT
114765705 TAAA-TAAATT-GGAAA
1 TAAATTAAATTGGGAAA
114765720 TAAATTAAATTGGGAAA
1 TAAATTAAATTGGGAAA
114765737 TAAATT
1 TAAATT
114765743 CGAATTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 4 0.19
16 6 0.29
17 11 0.52
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (17 bp):
TAAATTAAATTGGGAAA
Found at i:114768940 original size:10 final size:10
Alignment explanation
Indices: 114768925--114768949 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
114768915 TGGAGTCGTT
114768925 TTGGCGTATC
1 TTGGCGTATC
114768935 TTGGCGTATC
1 TTGGCGTATC
114768945 TTGGC
1 TTGGC
114768950 AGGGTCATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.32, T:0.40
Consensus pattern (10 bp):
TTGGCGTATC
Found at i:114769859 original size:16 final size:16
Alignment explanation
Indices: 114769838--114769871 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
114769828 TTTAAAAATT
* *
114769838 ATAAAAATATTTTAAA
1 ATAAAAAAATTGTAAA
114769854 ATAAAAAAATTGTAAA
1 ATAAAAAAATTGTAAA
114769870 AT
1 AT
114769872 TTATATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
ATAAAAAAATTGTAAA
Found at i:114769910 original size:20 final size:21
Alignment explanation
Indices: 114769857--114769927 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
114769847 TTTTAAAATA
* *
114769857 AAAAAATTGTAAAATTTATAT
1 AAAAAATTATAAAATTTATTT
*
114769878 AAAAAATTTTAAAATTTATTT
1 AAAAAATTATAAAATTTATTT
* * *
114769899 TAAAAA-TATAAAAATTATTG
1 AAAAAATTATAAAATTTATTT
*
114769919 AAAATATTA
1 AAAAAATTA
114769928 AGAATTTGTA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.37
21 26 0.63
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (21 bp):
AAAAAATTATAAAATTTATTT
Found at i:114770235 original size:18 final size:19
Alignment explanation
Indices: 114770214--114770250 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
114770204 AAATCATAAT
114770214 AATTTTAAAAT-ATTTTAA
1 AATTTTAAAATAATTTTAA
*
114770232 AATTTTATAATAATTTTAA
1 AATTTTAAAATAATTTTAA
114770251 TTTTTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AATTTTAAAATAATTTTAA
Found at i:114770522 original size:19 final size:19
Alignment explanation
Indices: 114770483--114770561 Score: 68
Period size: 21 Copynumber: 3.9 Consensus size: 19
114770473 ATAAAATAAA
* **
114770483 TTTTACAATTTTTAAGGAT
1 TTTTACAAATTTTAAATAT
*
114770502 TTTTACAACTTTTAAATAT
1 TTTTACAAATTTTAAATAT
*
114770521 TTTTAAATAAATTTTAAATAT
1 TTTT--ACAAATTTTAAATAT
*
114770542 TTTTAAATAAATTTTAAATA
1 TTTT--ACAAATTTTAAATA
114770562 AAATTTAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
19 20 0.38
21 33 0.62
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.52
Consensus pattern (19 bp):
TTTTACAAATTTTAAATAT
Found at i:114770524 original size:10 final size:10
Alignment explanation
Indices: 114770511--114770562 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
114770501 TTTTTACAAC
*
114770511 TTTTAAATAT
1 TTTTAAATAA
114770521 TTTTAAATAAA
1 TTTTAAAT-AA
*
114770532 TTTTAAATAT
1 TTTTAAATAA
114770542 TTTTAAATAAA
1 TTTTAAAT-AA
114770553 TTTTAAATAA
1 TTTTAAATAA
114770563 AATTTAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
10 19 0.51
11 18 0.49
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTTTAAATAA
Found at i:114770537 original size:11 final size:11
Alignment explanation
Indices: 114770511--114770570 Score: 79
Period size: 11 Copynumber: 5.6 Consensus size: 11
114770501 TTTTTACAAC
*
114770511 TTTTAAAT-AT
1 TTTTAAATAAA
114770521 TTTTAAATAAA
1 TTTTAAATAAA
*
114770532 TTTTAAAT-AT
1 TTTTAAATAAA
114770542 TTTTAAATAAA
1 TTTTAAATAAA
114770553 TTTTAAATAAA
1 TTTTAAATAAA
*
114770564 ATTTAAA
1 TTTTAAA
114770571 ATTTTCTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
10 17 0.39
11 27 0.61
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTTTAAATAAA
Found at i:114770537 original size:21 final size:21
Alignment explanation
Indices: 114770511--114770561 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
114770501 TTTTTACAAC
114770511 TTTTAAATATTTTTAAATAAA
1 TTTTAAATATTTTTAAATAAA
114770532 TTTTAAATATTTTTAAATAAA
1 TTTTAAATATTTTTAAATAAA
114770553 TTTTAAATA
1 TTTTAAATA
114770562 AAATTTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTTAAATATTTTTAAATAAA
Found at i:114777718 original size:12 final size:12
Alignment explanation
Indices: 114777701--114777734 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
114777691 CCTCTAAGAC
114777701 ATTTATGCAATG
1 ATTTATGCAATG
114777713 ATTTATGCAATG
1 ATTTATGCAATG
*
114777725 ATTTTTGCAA
1 ATTTATGCAA
114777735 ATGAGTCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (12 bp):
ATTTATGCAATG
Found at i:114778337 original size:29 final size:27
Alignment explanation
Indices: 114778296--114778359 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 27
114778286 TGTTGCTCCC
*
114778296 AATAATTTTTATTTACTTT-TTATATTTTT
1 AATATTTTTTATTTA-TTTGTT-TA-TTTT
114778325 AATATTTTTTATTTATTTGTTTATTTT
1 AATATTTTTTATTTATTTGTTTATTTT
114778352 AA-ATTTTT
1 AATATTTTT
114778360 AAAAAAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
26 6 0.18
27 6 0.18
28 5 0.15
29 16 0.48
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (27 bp):
AATATTTTTTATTTATTTGTTTATTTT
Found at i:114786094 original size:63 final size:63
Alignment explanation
Indices: 114786017--114786144 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
114786007 ATATATAAAT
114786017 TAATTGATTATATTTCCAACCAAATTCAAATTTAAACCAAGCTAAAACTTAAAAATATTTCTC
1 TAATTGATTATATTTCCAACCAAATTCAAATTTAAACCAAGCTAAAACTTAAAAATATTTCTC
114786080 TAATTGATTATATTTCCAACCAAATTCAAATTTAAACCAAGCTAAAACTTAAAAATATTTCTC
1 TAATTGATTATATTTCCAACCAAATTCAAATTTAAACCAAGCTAAAACTTAAAAATATTTCTC
114786143 TA
1 TA
114786145 GTTGTGACGA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (63 bp):
TAATTGATTATATTTCCAACCAAATTCAAATTTAAACCAAGCTAAAACTTAAAAATATTTCTC
Found at i:114792228 original size:53 final size:53
Alignment explanation
Indices: 114792146--114792250 Score: 174
Period size: 53 Copynumber: 2.0 Consensus size: 53
114792136 ACCGCTGGAA
* *
114792146 AAATGTGACCGTTGGTCCAATTAGCCGTTGGTTTCAACGGTTAGAAAATCAAG
1 AAATGTGACCGTTGGTCCAAGTAGCCGTTGGTCTCAACGGTTAGAAAATCAAG
* *
114792199 AAATGTGACCGTTGGTCTAAGTAGTCGTTGGTCTCAACGGTTAGAAAATCAA
1 AAATGTGACCGTTGGTCCAAGTAGCCGTTGGTCTCAACGGTTAGAAAATCAA
114792251 CGATGGTGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (53 bp):
AAATGTGACCGTTGGTCCAAGTAGCCGTTGGTCTCAACGGTTAGAAAATCAAG
Found at i:114793187 original size:25 final size:25
Alignment explanation
Indices: 114793153--114793217 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 25
114793143 AGGCGCGACC
114793153 TATTTTTTTAATAATATAATT-TATT
1 TATTTTTTTAATAATATAATTAT-TT
*
114793178 TATTTTTTT-A-AATATTATTATTT
1 TATTTTTTTAATAATATAATTATTT
114793201 TATTATATTTTAATAAT
1 TATT-T-TTTTAATAAT
114793218 TTTTAAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
23 14 0.41
24 3 0.09
25 13 0.38
26 1 0.03
27 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (25 bp):
TATTTTTTTAATAATATAATTATTT
Found at i:114793191 original size:26 final size:27
Alignment explanation
Indices: 114793153--114793211 Score: 77
Period size: 25 Copynumber: 2.2 Consensus size: 27
114793143 AGGCGCGACC
114793153 TATTTTTTTAATAATA-TAATTTATT-
1 TATTTTTTTAATAATATTAATTTATTA
* *
114793178 TATTTTTTTAAATATTATTATTTTATTA
1 TATTTTTTT-AATAATATTAATTTATTA
114793206 TATTTT
1 TATTTT
114793212 AATAATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 9 0.31
26 6 0.21
27 8 0.28
28 6 0.21
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (27 bp):
TATTTTTTTAATAATATTAATTTATTA
Found at i:114794516 original size:3 final size:3
Alignment explanation
Indices: 114794489--114794557 Score: 77
Period size: 3 Copynumber: 22.7 Consensus size: 3
114794479 ACTAACATTT
* * * *
114794489 TTC TTC TTTC TCC TCC TTC TCC TTC TTC TTC TTC TTC TTT TTC TTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
114794535 TTC TTC TTC TTC TT- TTC TCTC TT
1 TTC TTC TTC TTC TTC TTC T-TC TT
114794558 TGCTGCTGCA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.04
3 49 0.86
4 6 0.11
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:114794729 original size:27 final size:27
Alignment explanation
Indices: 114794689--114794752 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
114794679 GCTGCAGGGA
*
114794689 GTCGCGCCTTTGCAGCAGGAGCGACTG
1 GTCGCGCCTCTGCAGCAGGAGCGACTG
114794716 GTCGCGCCTCTGCAGCAGGAGCGACTG
1 GTCGCGCCTCTGCAGCAGGAGCGACTG
114794743 GTCGCGCCTC
1 GTCGCGCCTC
114794753 CAGGTCTGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.12, C:0.34, G:0.36, T:0.17
Consensus pattern (27 bp):
GTCGCGCCTCTGCAGCAGGAGCGACTG
Found at i:114794849 original size:25 final size:27
Alignment explanation
Indices: 114794810--114794866 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 27
114794800 AAAAATTATT
*
114794810 AAAATATAATAAAATAATAATATTTAA
1 AAAATATAATAAAATAATAATATTAAA
* *
114794837 AAAATA-AAT-AAATTATATTATTAAA
1 AAAATATAATAAAATAATAATATTAAA
114794862 AAAAT
1 AAAAT
114794867 GGGTCGCGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 18 0.67
26 3 0.11
27 6 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (27 bp):
AAAATATAATAAAATAATAATATTAAA
Found at i:114802167 original size:93 final size:93
Alignment explanation
Indices: 114802054--114802225 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
114802044 CGCCCATAAG
* *
114802054 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
114802119 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
114802147 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
114802212 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
114802226 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:114802222 original size:46 final size:46
Alignment explanation
Indices: 114802047--114802222 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
114802037 TGTAACCCGC
* * *
114802047 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
114802093 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
114802143 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
114802186 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
114802223 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:114809647 original size:44 final size:45
Alignment explanation
Indices: 114809584--114809710 Score: 211
Period size: 46 Copynumber: 2.8 Consensus size: 45
114809574 TGTAACCCGC
* * *
114809584 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGC-TCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCGCAT
114809628 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACA-TCGCAT
114809674 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
114809711 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
44 35 0.45
46 43 0.55
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCGCAT
Found at i:114809729 original size:46 final size:45
Alignment explanation
Indices: 114809592--114809729 Score: 149
Period size: 46 Copynumber: 3.0 Consensus size: 45
114809582 GCCCATAAGC
* *
114809592 GAACTCGGACTCAACTCAACGAGCTCGG--GCTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
114809636 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
114809682 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
114809728 GA
1 GA
114809730 CATGTCACTT
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
44 27 0.33
46 50 0.60
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:114813537 original size:18 final size:20
Alignment explanation
Indices: 114813495--114813537 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
114813485 GACAAAAAGT
*
114813495 ATATTATAAAAAATAATTTAC
1 ATATTATAAAAAAT-ATATAC
114813516 ATATTATAAAAAAT-TATA-
1 ATATTATAAAAAATATATAC
114813534 ATAT
1 ATAT
114813538 ATTGTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 3 0.14
21 14 0.67
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
ATATTATAAAAAATATATAC
Found at i:114817363 original size:93 final size:93
Alignment explanation
Indices: 114817250--114817421 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
114817240 CGCCCATAAG
* *
114817250 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
114817315 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
114817343 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
114817408 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
114817422 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:114817418 original size:46 final size:46
Alignment explanation
Indices: 114817243--114817418 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
114817233 TGTAACCCGC
* * *
114817243 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
114817289 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
114817339 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
114817382 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
114817419 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:114824873 original size:45 final size:46
Alignment explanation
Indices: 114824749--114824876 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
114824739 TGTAACCCGC
* * * *
114824749 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
114824795 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
114824841 CCATAAGTGAACT-GGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
114824877 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 23 0.29
46 55 0.71
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:114824895 original size:45 final size:45
Alignment explanation
Indices: 114824757--114824895 Score: 131
Period size: 46 Copynumber: 3.0 Consensus size: 45
114824747 GCCCATAAGC
* ** * *
114824757 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
114824803 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
114824849 GAACT-GGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
114824894 GA
1 GA
114824896 CATGTCACTT
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
45 30 0.36
46 49 0.58
47 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:114827615 original size:35 final size:35
Alignment explanation
Indices: 114827576--114827773 Score: 96
Period size: 35 Copynumber: 5.4 Consensus size: 35
114827566 CGGTTATCTG
*
114827576 ACTAGTGCTGGGCGCAATTATCGTTGGTTTATCCA
1 ACTAGAGCTGGGCGCAATTATCGTTGGTTTATCCA
* * * ***
114827611 ACTAG-GCCTAGGCTTACAATTACTATCGTCGGTTTATTTG
1 ACTAGAG-CTGGGC--GCAA-T--TATCGTTGGTTTATCCA
* * *
114827651 ACTAGCA-CTGGGTGCAAATATTGTTGGTTTATCCA
1 ACTAG-AGCTGGGCGCAATTATCGTTGGTTTATCCA
* * **
114827686 ACTAGAGTTGGGTTCACAATTACTATCGCCGGTTTATCCA
1 ACTAGAGCTGGG--CGCAA-T--TATCGTTGGTTTATCCA
* ** *
114827726 ACTAGCA-CTGGGTGCAAACATTGTTGGTTTATCCA
1 ACTAG-AGCTGGGCGCAATTATCGTTGGTTTATCCA
114827761 ACTAGAGCTGGGC
1 ACTAGAGCTGGGC
114827774 TCAAATTCAA
Statistics
Matches: 116, Mismatches: 31, Indels: 32
0.65 0.17 0.18
Matches are distributed among these distances:
34 3 0.03
35 54 0.47
37 6 0.05
38 7 0.06
40 45 0.39
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (35 bp):
ACTAGAGCTGGGCGCAATTATCGTTGGTTTATCCA
Found at i:114827705 original size:75 final size:75
Alignment explanation
Indices: 114827569--114827817 Score: 279
Period size: 75 Copynumber: 3.3 Consensus size: 75
114827559 CAATTGCCGG
** * * * * *
114827569 TTATCTGACTAGTGCTGGGCGCAATTATCGTTGGTTTATCCAACTAG-GCCTAGGCTT-ACAATT
1 TTATCTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAG--TTGGGTTCACAATT
114827632 ACTATCGTCGGT
64 ACTATCGTCGGT
*
114827644 TTATTTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGTTCACAATTAC
1 TTATCTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGTTCACAATTAC
*
114827709 TATCGCCGGT
66 TATCGTCGGT
** * * *
114827719 TTATCCAACTAGCACTGGGTGCAAACATTGTTGGTTTATCCAACTAGAGCTGGGCTCA-AATTCA
1 TTATCTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGTTCACAATT-A
* * *
114827783 ATATTGTTGGT
65 CTATCGTCGGT
* *
114827794 TAATCTGACTAGCGCTGGGTGCAA
1 TTATCTGACTAGCACTGGGTGCAA
114827818 CCTTTTCTGC
Statistics
Matches: 148, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
74 9 0.06
75 138 0.93
76 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (75 bp):
TTATCTGACTAGCACTGGGTGCAAATATTGTTGGTTTATCCAACTAGAGTTGGGTTCACAATTAC
TATCGTCGGT
Found at i:114827738 original size:40 final size:40
Alignment explanation
Indices: 114827594--114827738 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 40
114827584 TGGGCGCAAT
* *
114827594 TATCGTTGGTTTATCCAACTAGGC-CTAGGCTT-ACAATTAC
1 TATCGTCGGTTTATCCAACTA-GCACT-GGGTTCACAATTAC
*** *
114827634 TATCGTCGGTTTATTTGACTAGCACTGGGTGCA-AA-TA-
1 TATCGTCGGTTTATCCAACTAGCACTGGGTTCACAATTAC
* *
114827671 T-T-GTTGGTTTATCCAACTAG-AGTTGGGTTCACAATTAC
1 TATCGTCGGTTTATCCAACTAGCA-CTGGGTTCACAATTAC
*
114827709 TATCGCCGGTTTATCCAACTAGCACTGGGT
1 TATCGTCGGTTTATCCAACTAGCACTGGGT
114827739 GCAAACATTG
Statistics
Matches: 81, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
34 1 0.01
35 21 0.26
36 3 0.04
37 3 0.04
38 3 0.04
39 8 0.10
40 41 0.51
41 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.35
Consensus pattern (40 bp):
TATCGTCGGTTTATCCAACTAGCACTGGGTTCACAATTAC
Found at i:114837456 original size:17 final size:18
Alignment explanation
Indices: 114837421--114837459 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
114837411 AATTAAACTT
114837421 TAAAATGTTAAAAATAAA
1 TAAAATGTTAAAAATAAA
114837439 TAAAAT-TTCAAAAA-AAA
1 TAAAATGTT-AAAAATAAA
114837456 TAAA
1 TAAA
114837460 TGGGTTCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (18 bp):
TAAAATGTTAAAAATAAA
Found at i:114838912 original size:16 final size:17
Alignment explanation
Indices: 114838888--114838921 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
114838878 TATCCATACG
*
114838888 ACATTTATACAA-ATTC
1 ACATATATACAACATTC
114838904 ACATATATACAACATTC
1 ACATATATACAACATTC
114838921 A
1 A
114838922 ATTCAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (17 bp):
ACATATATACAACATTC
Found at i:114839093 original size:21 final size:21
Alignment explanation
Indices: 114839069--114839112 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
114839059 TAAATTTAGC
* *
114839069 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATTCACAT
*
114839090 TCAATTCAATTCAATTCACAT
1 TCAATTCAATACAATTCACAT
114839111 TC
1 TC
114839113 TAGGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:114839098 original size:5 final size:5
Alignment explanation
Indices: 114839069--114839112 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
114839059 TAAATTTAGC
* *
114839069 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCACAT TC
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA-AT TC
114839113 TAGGAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
5 24 0.73
6 9 0.27
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:114839101 original size:16 final size:16
Alignment explanation
Indices: 114839080--114839112 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
114839070 CAATTTAATA
114839080 CAATTCATATTCA-ATT
1 CAATTCA-ATTCACATT
114839096 CAATTCAATTCACATT
1 CAATTCAATTCACATT
114839112 C
1 C
114839113 TAGGAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.39
Consensus pattern (16 bp):
CAATTCAATTCACATT
Found at i:114842521 original size:87 final size:87
Alignment explanation
Indices: 114842375--114842541 Score: 316
Period size: 87 Copynumber: 1.9 Consensus size: 87
114842365 TCTAGCTAAA
*
114842375 GAAGAGTGATTAAAAGGACTATTTTGTTATTTTTCGAAAGTTGAGTGACTGAATTGAAACCTGAG
1 GAAGAGTGATTAAAAGGACTATTTTGTTATTTTTCGAAAGTTGAGTGACTGAATTGAAACCTGAA
114842440 TGACTATTTTGTCAGTTACCCC
66 TGACTATTTTGTCAGTTACCCC
*
114842462 GAAGAGTGATTAAAAGGACTATTTTGTTATTTTTTGAAAGTTGAGTGACTGAATTGAAACCTGAA
1 GAAGAGTGATTAAAAGGACTATTTTGTTATTTTTCGAAAGTTGAGTGACTGAATTGAAACCTGAA
114842527 TGACTATTTTGTCAG
66 TGACTATTTTGTCAG
114842542 AGAGTGATTG
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
87 78 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (87 bp):
GAAGAGTGATTAAAAGGACTATTTTGTTATTTTTCGAAAGTTGAGTGACTGAATTGAAACCTGAA
TGACTATTTTGTCAGTTACCCC
Found at i:114843828 original size:15 final size:17
Alignment explanation
Indices: 114843808--114843839 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
114843798 TTAGGAAACG
114843808 TACATAA-A-AAATATA
1 TACATAATATAAATATA
114843823 TACATAATATAAATATA
1 TACATAATATAAATATA
114843840 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:114845805 original size:77 final size:74
Alignment explanation
Indices: 114845707--114846364 Score: 509
Period size: 77 Copynumber: 8.6 Consensus size: 74
114845697 GTGATCTGAA
114845707 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGC
*
114845772 ATGTGAACCGAG
65 A-GTG-TCCGAG
* * *
114845784 GCTCAACTCACCTCTCACAATATAAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAAC-
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCA
*
114845847 GTGTCTTGAG
66 GTGTC-CGAG
** * * *
114845857 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAATTTGAAATTACCTCAGC-
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCA
114845919 GTGTCCCGAG
66 GTGT-CCGAG
114845929 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAA-ACAGAAATTGAAAATACCTCA
*
114845994 GCA-TGTCTTGAG
63 GCAGTGTC-CGAG
** * * * *
114846006 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTTAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAACAGAAATTGAAAATACCTCAGC
114846071 -GTGTCCTGAG
65 AGTGTCC-GAG
* * * * *
114846081 GCTAAACTCACCTCTCGCAATATGAGTTGAATTTTTTTTTGAAAAATATAAATTTAAAAGTAGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTTTG-AAAACAGAAATTGAAAA-T--AC
* * * * *
114846146 AT-TGAAAT-TAACTCAACG
59 CTCAGCAGTGT--C-CGA-G
* * * * *
114846164 TGCCTTGAGGCTCAACT-TAC-C--TCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGA
1 -G-C-TCA-ACTCACCTCT-CGCAATAT-G-AGT-TGA-TT--TTTT-TGAAA-ACAGAAATTGA
**
114846225 AAATACCTCAGCA-TGTTTTGAG
53 AAATACCTCAGCAGTG-TCCGAG
** * * *
114846247 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAATTGAAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAACAGAAATTGAAAATACCTCAG
114846312 C-GTGTCCTGAG
64 CAGTGTCC-GAG
114846323 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
114846365 ATATAAATTT
Statistics
Matches: 464, Mismatches: 73, Indels: 91
0.74 0.12 0.14
Matches are distributed among these distances:
72 64 0.14
73 33 0.07
74 10 0.02
75 77 0.17
76 84 0.18
77 94 0.20
78 16 0.03
79 10 0.02
80 11 0.02
81 5 0.01
82 5 0.01
83 3 0.01
84 4 0.01
85 7 0.02
86 10 0.02
87 18 0.04
88 13 0.03
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (74 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCA
GTGTCCGAG
Done.