Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 38 of 425
Found at i:9841078 original size:17 final size:17
Alignment explanation
Indices: 9841049--9841181 Score: 74
Period size: 17 Copynumber: 7.5 Consensus size: 17
9841039 AAATCTTAAA
*
9841049 AATTTTCAT-ATTTTAT
1 AATTTTTATAATTTTAT
9841065 AATTTTTATAATTTTAT
1 AATTTTTATAATTTTAT
* *
9841082 AAGTTTTTCT-ATTTT-C
1 AA-TTTTTATAATTTTAT
*
9841098 AATATTTTGTAATTTTTAAT
1 AAT-TTTTATAA-TTTT-AT
* *
9841118 ATTTTTTATAATTTTTT
1 AATTTTTATAATTTTAT
* * *
9841135 AATATGTATTTTTTATTTTTT
1 -A-AT-T-TTTATAATTTTAT
* *
9841156 ATTTTTTGTAATTTTAT
1 AATTTTTATAATTTTAT
9841173 AATTTTTAT
1 AATTTTTAT
9841182 TTTTCTATTT
Statistics
Matches: 89, Mismatches: 17, Indels: 21
0.70 0.13 0.17
Matches are distributed among these distances:
15 1 0.01
16 15 0.17
17 33 0.37
18 16 0.18
19 9 0.10
20 4 0.04
21 11 0.12
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (17 bp):
AATTTTTATAATTTTAT
Found at i:9841095 original size:26 final size:26
Alignment explanation
Indices: 9841066--9841137 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 26
9841056 ATATTTTATA
*
9841066 ATTTTTATAATTTTATAAGTTTTT-CT
1 ATTTTTATAATTTTATAA-TTTTTAAT
* *
9841092 ATTTTCA-ATATTTTGTAATTTTTAAT
1 ATTTTTATA-ATTTTATAATTTTTAAT
*
9841118 ATTTTTTATAATTTTTTAAT
1 A-TTTTTATAATTTTATAAT
9841138 ATGTATTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
25 6 0.16
26 16 0.43
27 14 0.38
28 1 0.03
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (26 bp):
ATTTTTATAATTTTATAATTTTTAAT
Found at i:9841153 original size:20 final size:19
Alignment explanation
Indices: 9841102--9841179 Score: 65
Period size: 20 Copynumber: 4.1 Consensus size: 19
9841092 ATTTTCAATA
*
9841102 TTTTGTAATTTTTAATATT
1 TTTTATAATTTTTAATATT
9841121 TTTTATAATTTTTTAATATGT
1 TTTTATAA-TTTTTAATAT-T
*
9841142 ATTTT-TTATTTTT--TATT
1 -TTTTATAATTTTTAATATT
*
9841159 TTTTGTAATTTTATAAT-TT
1 TTTTATAATTTT-TAATATT
9841178 TT
1 TT
9841180 ATTTTTCTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
16 4 0.08
17 7 0.14
18 4 0.08
19 11 0.22
20 16 0.33
21 3 0.06
22 4 0.08
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (19 bp):
TTTTATAATTTTTAATATT
Found at i:9841168 original size:38 final size:39
Alignment explanation
Indices: 9841117--9841191 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 39
9841107 TAATTTTTAA
*
9841117 TATTTTTTATAATTTTTTAATATGTATTTTT-TATTTTT
1 TATTTTTTATAATTTTATAATATGTATTTTTCTATTTTT
* * *
9841155 TATTTTTTGTAATTTTATAATTTTTATTTTTCTATTT
1 TATTTTTTATAATTTTATAATATGTATTTTTCTATTT
9841192 CAATAGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 27 0.84
39 5 0.16
ACGTcount: A:0.23, C:0.01, G:0.03, T:0.73
Consensus pattern (39 bp):
TATTTTTTATAATTTTATAATATGTATTTTTCTATTTTT
Found at i:9841230 original size:7 final size:7
Alignment explanation
Indices: 9841218--9841242 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9841208 TTTCTGTATT
9841218 TTTTAAA
1 TTTTAAA
9841225 TTTTAAA
1 TTTTAAA
9841232 TTTTAAA
1 TTTTAAA
9841239 TTTT
1 TTTT
9841243 TTCTATTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTAAA
Found at i:9841249 original size:59 final size:57
Alignment explanation
Indices: 9841148--9841287 Score: 151
Period size: 59 Copynumber: 2.4 Consensus size: 57
9841138 ATGTATTTTT
* * * *
9841148 TATTTTT-TATTTTTTGTAATTTTATAATTTTTATTTTTCTATTTC-AATAGTTTTAA
1 TATTTTTATATTTTTT-AAATTTTATAATTTTAATTTTTCTATTTCTAATAATTATAA
* *
9841204 TGTTTTTCTGTATTTTTTAAATTTTA-AATTTTAAATTTTTTCTATTTCTTAATAATTATAA
1 T-ATTTT-TATATTTTTTAAATTTTATAATTTT-AA-TTTTTCTATTTC-TAATAATTATAA
9841265 TATTTTTATATTTTTTAAATTTT
1 TATTTTTATATTTTTTAAATTTT
9841288 TTTTTAATAA
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
56 1 0.01
57 10 0.14
58 9 0.13
59 36 0.51
60 4 0.06
61 10 0.14
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.66
Consensus pattern (57 bp):
TATTTTTATATTTTTTAAATTTTATAATTTTAATTTTTCTATTTCTAATAATTATAA
Found at i:9841442 original size:2 final size:2
Alignment explanation
Indices: 9841435--9841459 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9841425 CTATAAAAAT
9841435 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
9841460 CAAGTCTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9842703 original size:14 final size:15
Alignment explanation
Indices: 9842675--9842703 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9842665 ATATAAAAAC
9842675 TAAGAATATTAAATT
1 TAAGAATATTAAATT
9842690 TAAGAATA-TAAATT
1 TAAGAATATTAAATT
9842704 ATATTCACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (15 bp):
TAAGAATATTAAATT
Found at i:9842885 original size:9 final size:9
Alignment explanation
Indices: 9842871--9842896 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
9842861 TCGATCTGAG
9842871 TTATTTGAA
1 TTATTTGAA
9842880 TTATTTGAA
1 TTATTTGAA
9842889 TTATTTGA
1 TTATTTGA
9842897 GTAAACTCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (9 bp):
TTATTTGAA
Found at i:9844413 original size:19 final size:18
Alignment explanation
Indices: 9844377--9844418 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
9844367 TTATATGTTC
9844377 TTTTTTACTTTTTGTTTA
1 TTTTTTACTTTTTGTTTA
*
9844395 TCTTTTTAGTTTTAT-TTTA
1 T-TTTTTACTTTT-TGTTTA
9844414 TTTTT
1 TTTTT
9844419 CAAATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.24
19 15 0.71
20 1 0.05
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTTTTACTTTTTGTTTA
Found at i:9844649 original size:30 final size:31
Alignment explanation
Indices: 9844615--9844673 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
9844605 TAACTAAAAA
9844615 AAAGTTATAATTTGA-TCACTAAACTATTTG
1 AAAGTTATAATTTGAGTCACTAAACTATTTG
* *
9844645 AAAGTTTTCATTTGAGTCACTAAACTATT
1 AAAGTTATAATTTGAGTCACTAAACTATT
9844674 CAAAAGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (31 bp):
AAAGTTATAATTTGAGTCACTAAACTATTTG
Found at i:9844668 original size:31 final size:30
Alignment explanation
Indices: 9844614--9844683 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 30
9844604 TTAACTAAAA
* *
9844614 AAAAGTTATAATTTGATCACTAAACTATTT
1 AAAAGTTTTAATTTGATCACTAAACTATTC
* *
9844644 GAAAGTTTTCATTTGAGTCACTAAACTATTC
1 AAAAGTTTTAATTTGA-TCACTAAACTATTC
9844675 AAAAGTTTT
1 AAAAGTTTT
9844684 TATGTAAGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 13 0.38
31 21 0.62
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (30 bp):
AAAAGTTTTAATTTGATCACTAAACTATTC
Found at i:9844694 original size:31 final size:31
Alignment explanation
Indices: 9844630--9844694 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
9844620 TATAATTTGA
** * *
9844630 TCACTAAACTATTTGAAAGTTTTCATTTGAG
1 TCACTAAACTATTCAAAAGTTTTCATGTAAG
*
9844661 TCACTAAACTATTCAAAAGTTTTTATGTAAG
1 TCACTAAACTATTCAAAAGTTTTCATGTAAG
9844692 TCA
1 TCA
9844695 TTAAGTTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (31 bp):
TCACTAAACTATTCAAAAGTTTTCATGTAAG
Found at i:9846335 original size:15 final size:15
Alignment explanation
Indices: 9846315--9846355 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
9846305 TTTTAAATGT
*
9846315 TAAAAAATATAAAAA
1 TAAAAAATAAAAAAA
**
9846330 TAAAAAGGAAAAAAA
1 TAAAAAATAAAAAAA
9846345 TAAAAAATAAA
1 TAAAAAATAAA
9846356 CTCTATATAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (15 bp):
TAAAAAATAAAAAAA
Found at i:9860462 original size:212 final size:213
Alignment explanation
Indices: 9860095--9860502 Score: 809
Period size: 212 Copynumber: 1.9 Consensus size: 213
9860085 TGGTTGGCTG
9860095 TGTGACCTAAGTTTGAGAGTTACACGGGTATGAACATGGGCTGGGACACGGCCGTGTGCCTCACA
1 TGTGACCTAAGTTTGAGAGTTACACGGGTATGAACATGGGCTGGGACACGGCCGTGTGCCTCACA
9860160 TTGAATGCCCACACGACCTAGGACACGGGTGTGTTACATGGCCGTGTGAGCCACATGGCTTGGCC
66 TTGAATGCCCACACGACCTAGGACACGGGTGTGTTACATGGCCGTGTGAGCCACATGGCTTGGCC
9860225 ATACGAGCGTGTGTCCCCTGCACCTAAG-AAAAAAATTGAAATTTCGCTAAAAATTCTCTACGTT
131 ATACGAGCGTGTGTCCCCTGCACCTAAGAAAAAAAATTGAAATTTCGCTAAAAATTCTCTACGTT
9860289 CGCTCGTGTGCTAGGCCA
196 CGCTCGTGTGCTAGGCCA
9860307 TGTGACCTAAGTTTGAGAGTTACACGGGTATGAACATGGGCTGGGACACGGCCGTGTGCCTCACA
1 TGTGACCTAAGTTTGAGAGTTACACGGGTATGAACATGGGCTGGGACACGGCCGTGTGCCTCACA
9860372 TTGAATGCCCACACGACCTAGGACACGGGTGTGTTACATGGCCGTGTGAGCCACATGGCTTGGCC
66 TTGAATGCCCACACGACCTAGGACACGGGTGTGTTACATGGCCGTGTGAGCCACATGGCTTGGCC
9860437 ATACGAGCGTGTGTCCCCTGCACCTAAGAAAAAAAATTGAAATTTCGCTAAAAATTCTCTACGTT
131 ATACGAGCGTGTGTCCCCTGCACCTAAGAAAAAAAATTGAAATTTCGCTAAAAATTCTCTACGTT
9860502 C
196 C
9860503 CTGATTTAGT
Statistics
Matches: 195, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
212 158 0.81
213 37 0.19
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (213 bp):
TGTGACCTAAGTTTGAGAGTTACACGGGTATGAACATGGGCTGGGACACGGCCGTGTGCCTCACA
TTGAATGCCCACACGACCTAGGACACGGGTGTGTTACATGGCCGTGTGAGCCACATGGCTTGGCC
ATACGAGCGTGTGTCCCCTGCACCTAAGAAAAAAAATTGAAATTTCGCTAAAAATTCTCTACGTT
CGCTCGTGTGCTAGGCCA
Found at i:9862113 original size:25 final size:25
Alignment explanation
Indices: 9862079--9862127 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
9862069 TGTGCCTAGC
9862079 AGGCTAAGTGCTGGTGTATTGATTT
1 AGGCTAAGTGCTGGTGTATTGATTT
*
9862104 AGGCTTAGTGCTGGTGTATTGATT
1 AGGCTAAGTGCTGGTGTATTGATT
9862128 CAAGCTTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.08, G:0.33, T:0.41
Consensus pattern (25 bp):
AGGCTAAGTGCTGGTGTATTGATTT
Found at i:9862134 original size:25 final size:25
Alignment explanation
Indices: 9862085--9862139 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
9862075 TAGCAGGCTA
* *
9862085 AGTGCTGGTGTATTGATTTAGGCTT
1 AGTGCTGGTGTATTGATTCAAGCTT
9862110 AGTGCTGGTGTATTGATTCAAGCTT
1 AGTGCTGGTGTATTGATTCAAGCTT
*
9862135 TGTGC
1 AGTGC
9862140 CTAGCAAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.16, C:0.11, G:0.31, T:0.42
Consensus pattern (25 bp):
AGTGCTGGTGTATTGATTCAAGCTT
Found at i:9862184 original size:41 final size:41
Alignment explanation
Indices: 9862117--9862207 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 41
9862107 CTTAGTGCTG
* * *
9862117 GTGTATTGATTCAAGCTTTGTGCCTAGCAAGCTTCGTGCCA
1 GTGTATTGATTCAAGCTCTGTACCTAGCAAGCTTCATGCCA
* * * **
9862158 GTGTATTGATTTAGGCTCTGTACCTAGCATGCTTCATGCTG
1 GTGTATTGATTCAAGCTCTGTACCTAGCAAGCTTCATGCCA
9862199 GTGTATTGA
1 GTGTATTGA
9862208 ATAAGGTAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (41 bp):
GTGTATTGATTCAAGCTCTGTACCTAGCAAGCTTCATGCCA
Found at i:9866398 original size:43 final size:43
Alignment explanation
Indices: 9866350--9866438 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
9866340 TTCAACTTTC
9866350 AAAGCTAATAAGTCAATATATAACCATTTATACATATGTTCAT
1 AAAGCTAATAAGTCAATATATAACCATTTATACATATGTTCAT
9866393 AAAGCTAATAAGTCAATATATAACCATTTATACATATGTTCAT
1 AAAGCTAATAAGTCAATATATAACCATTTATACATATGTTCAT
9866436 AAA
1 AAA
9866439 AATAAGCTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (43 bp):
AAAGCTAATAAGTCAATATATAACCATTTATACATATGTTCAT
Found at i:9869902 original size:40 final size:40
Alignment explanation
Indices: 9869818--9869998 Score: 170
Period size: 40 Copynumber: 4.5 Consensus size: 40
9869808 TCAAATGATG
* * * * *
9869818 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAA
* *
9869858 TCCGGACTAGGAT-CCGAAGGCATTTATGCGAGTTACTAAT
1 TCCGGACTAAG-TCCCGAAGGCATTTATGCGAGTTACTAAA
**
9869898 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
** ** *
9869938 TCCGGGTTAAGTCCCGAAGGGGTTTATGCGAGTTGCTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTATGCGAGTTACTA-AA
* *
9869979 -CCGGGCTATGTCCCGAAGGC
1 TCCGGACTAAGTCCCGAAGGC
9869999 GTTTGAACGA
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 110 0.92
41 9 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
Found at i:9869955 original size:80 final size:80
Alignment explanation
Indices: 9869818--9869998 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
9869808 TCAAATGATG
* * *
9869818 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
9869883 ATGCGAGTTACTA-A
66 ATGCGAGTTACTATA
* * * ** **
9869897 TTCCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGGG
1 -TCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
9869960 TTTATGCGAGTTGCTATA
63 TTTATGCGAGTTACTATA
* *
9869978 ACCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
9869999 GTTTGAACGA
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.01
80 76 0.90
81 7 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
ATGCGAGTTACTATA
Found at i:9870010 original size:40 final size:40
Alignment explanation
Indices: 9869871--9870036 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
9869861 GGACTAGGAT
* * *
9869871 CCGAAGGCATTTATGCGAGTTACTA-ATTCCGGGTTAAGTC
1 CCGAAGGCGTTTATGCGAGTTGCTATA-ACCGGGTTAAGTC
* *
9869911 CCGAAGGCATTTATGCGAGTTACTA-AATCCGGGTTAAGTC
1 CCGAAGGCGTTTATGCGAGTTGCTATAA-CCGGGTTAAGTC
* * *
9869951 CCGAAGGGGTTTATGCGAGTTGCTATAACCGGGCTATGTC
1 CCGAAGGCGTTTATGCGAGTTGCTATAACCGGGTTAAGTC
* * * * *
9869991 CCGAAGGCGTTTGA-ACGAGTAGCTATATCC-GGTTAAATT
1 CCGAAGGCGTTT-ATGCGAGTTGCTATAACCGGGTTAAGTC
9870030 CCGAAGG
1 CCGAAGG
9870037 TACATGATTC
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 12 0.11
40 94 0.86
41 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCGTTTATGCGAGTTGCTATAACCGGGTTAAGTC
Found at i:9879495 original size:80 final size:80
Alignment explanation
Indices: 9879348--9879568 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
9879338 TCAAATGATG
* * * * * *
9879348 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-ACTCGGACTAGGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTATAAC-CGGGCTAAG-TCCCGAAGGCA
9879410 TTTATGCGAGTTACTAAA
63 TTTATGCGAGTTACTAAA
* *
9879428 TCTGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
9879492 TATGCGAGTTACTAAA
65 TATGCGAGTTACTAAA
** * *
9879508 TCCGGGTTAAGTCCCGAAGGGGTTTATGCGAGTTGCTATAACCGGGCTATGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
9879569 GTTTGAACGA
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
79 1 0.01
80 112 0.92
81 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
ATGCGAGTTACTAAA
Found at i:9879580 original size:40 final size:40
Alignment explanation
Indices: 9879401--9879568 Score: 266
Period size: 40 Copynumber: 4.2 Consensus size: 40
9879391 GGACTAGGAT
*
9879401 CCGAAGGCATTTATGCGAGTTACTAAATCTGGGTTAAGTC
1 CCGAAGGCATTTATGCGAGTTACTAAATCCGGGTTAAGTC
9879441 CCGAAGGCATTTATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTATGCGAGTTACTAAATCCGGGTTAAGTC
9879481 CCGAAGGCATTTATGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTATGCGAGTTACTAAATCCGGGTTAAGTC
** * * *
9879521 CCGAAGGGGTTTATGCGAGTTGCTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTACTA-AATCCGGGTTAAGTC
9879561 CCGAAGGC
1 CCGAAGGC
9879569 GTTTGAACGA
Statistics
Matches: 120, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 118 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTATGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:9879580 original size:80 final size:80
Alignment explanation
Indices: 9879401--9879606 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 80
9879391 GGACTAGGAT
* *
9879401 CCGAAGGCATTTATGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTA
1 CCGAAGGCATTTATACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTA
*
9879466 AATCCGGGTTAAGTC
66 AATCCGGGCTAAGTC
* ** *
9879481 CCGAAGGCATTTATGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGGGTTTATGCGAGTTGCTA
1 CCGAAGGCATTTATACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTA
*
9879546 TAA-CCGGGCTATGTC
66 -AATCCGGGCTAAGTC
* * * *
9879561 CCGAAGGCGTTTGA-ACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTT-ATACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
9879607 TACATGATTC
Statistics
Matches: 112, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
79 16 0.14
80 93 0.83
81 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGAAGGCATTTATACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTA
AATCCGGGCTAAGTC
Found at i:9879586 original size:40 final size:40
Alignment explanation
Indices: 9879401--9879592 Score: 137
Period size: 40 Copynumber: 4.8 Consensus size: 40
9879391 GGACTAGGAT
* * * *
9879401 CCGAAGGCATTTATGCGAGTTA-CTA-AATCTGGGTTAAGTC
1 CCGAAGGCGTTTATACGAG-TAGCTATAA-CCGGGCTAAGTC
* * *
9879441 CCGAAGGCATTTATGCGAGTTA-CTA-AATCCGGGTTAAGTC
1 CCGAAGGCGTTTATACGAG-TAGCTATAA-CCGGGCTAAGTC
* * *
9879481 CCGAAGGCATTTATGCGAGTTA-CTA-AATCCGGGTTAAGTC
1 CCGAAGGCGTTTATACGAG-TAGCTATAA-CCGGGCTAAGTC
* * * *
9879521 CCGAAGGGGTTTATGCGAGTTGCTATAACCGGGCTATGTC
1 CCGAAGGCGTTTATACGAGTAGCTATAACCGGGCTAAGTC
*
9879561 CCGAAGGCGTTTGA-ACGAGTAGCTATATCCGG
1 CCGAAGGCGTTT-ATACGAGTAGCTATAACCGG
9879593 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 135 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCGTTTATACGAGTAGCTATAACCGGGCTAAGTC
Found at i:9887526 original size:20 final size:21
Alignment explanation
Indices: 9887490--9887531 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
9887480 CAAAATAAAA
*
9887490 ATTAATATAAACATAAT-AAT
1 ATTAATATAAAAATAATCAAT
9887510 ATTAATA-AAAAATTAATCAAT
1 ATTAATATAAAAA-TAATCAAT
9887531 A
1 A
9887532 AAAAAACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 4 0.21
20 11 0.58
21 4 0.21
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTAATATAAAAATAATCAAT
Found at i:9888174 original size:16 final size:16
Alignment explanation
Indices: 9888136--9888181 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
9888126 AAGGTTTGTT
9888136 GAACTCAAATTTTCTC
1 GAACTCAAATTTTCTC
*
9888152 -AGTCTCAAATTTTCTC
1 GA-ACTCAAATTTTCTC
9888168 GAACTCAAACTTTT
1 GAACTCAAA-TTTT
9888182 GTGCTTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 1 0.04
16 19 0.76
17 5 0.20
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (16 bp):
GAACTCAAATTTTCTC
Found at i:9889992 original size:2 final size:2
Alignment explanation
Indices: 9889985--9890010 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9889975 AAGAACTAGT
9889985 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
9890011 AATTCTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9890565 original size:15 final size:16
Alignment explanation
Indices: 9890545--9890574 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9890535 CAATAATATT
9890545 TTTAATATT-TAAATG
1 TTTAATATTATAAATG
9890560 TTTAATATTATAAAT
1 TTTAATATTATAAAT
9890575 TTAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TTTAATATTATAAATG
Found at i:9890589 original size:22 final size:24
Alignment explanation
Indices: 9890538--9890590 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 24
9890528 TCAAAATCAA
*
9890538 TAATAT-TTTTAATATTTAAATGT
1 TAATATATTATAATATTTAAATGT
*
9890561 TTA-ATATTATAA-ATTTAAAT-T
1 TAATATATTATAATATTTAAATGT
9890582 TAATATATT
1 TAATATATT
9890591 TATTTTCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 3 0.12
22 15 0.60
23 7 0.28
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TAATATATTATAATATTTAAATGT
Found at i:9894560 original size:18 final size:19
Alignment explanation
Indices: 9894533--9894571 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9894523 CATTTGAAAC
9894533 AAAATAG-AAAATTTTGGA
1 AAAATAGAAAAATTTTGGA
*
9894551 AAAATTGAAAAATTTTGGA
1 AAAATAGAAAAATTTTGGA
9894570 AA
1 AA
9894572 CAGGGGTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.28
Consensus pattern (19 bp):
AAAATAGAAAAATTTTGGA
Found at i:9899580 original size:7 final size:7
Alignment explanation
Indices: 9899568--9899592 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9899558 TTAAAAACTT
9899568 AATTAAC
1 AATTAAC
9899575 AATTAAC
1 AATTAAC
9899582 AATTAAC
1 AATTAAC
9899589 AATT
1 AATT
9899593 CAATGTCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (7 bp):
AATTAAC
Found at i:9911521 original size:33 final size:32
Alignment explanation
Indices: 9911430--9911573 Score: 135
Period size: 32 Copynumber: 4.4 Consensus size: 32
9911420 CTATCCAATT
* *
9911430 TGTATACACAAAGTGCACATAACCTTTTTAAG
1 TGTATACACAAAGTGCACCTAACCTTTTCAAG
* * * * * **
9911462 TGTACATATATAGTGTACCTTTCCTTTTCAAG
1 TGTATACACAAAGTGCACCTAACCTTTTCAAG
* *
9911494 TCGTATACACAAAGTACACCTAACCTTTCCAAG
1 T-GTATACACAAAGTGCACCTAACCTTTTCAAG
** * *
9911527 TGTGCACACAAAGTGCACATAACCTTTTCATG
1 TGTATACACAAAGTGCACCTAACCTTTTCAAG
9911559 TGGTATACACAAAGT
1 T-GTATACACAAAGT
9911574 ATACCTTTCC
Statistics
Matches: 84, Mismatches: 26, Indels: 3
0.74 0.23 0.03
Matches are distributed among these distances:
32 50 0.60
33 34 0.40
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (32 bp):
TGTATACACAAAGTGCACCTAACCTTTTCAAG
Found at i:9911528 original size:65 final size:65
Alignment explanation
Indices: 9911431--9911579 Score: 163
Period size: 65 Copynumber: 2.3 Consensus size: 65
9911421 TATCCAATTT
* * ** * * * * * **
9911431 GTATACACAAAGTGCACATAACCTTTTTAAGTGTACATATATAGTGTACCTTTCCTTTTCAAGTC
1 GTATACACAAAGTACACCTAACCTTTCCAAGTGTACACACAAAGTGCACATAACCTTTTCAAGTC
* * *
9911496 GTATACACAAAGTACACCTAACCTTTCCAAGTGTGCACACAAAGTGCACATAACCTTTTCATGTG
1 GTATACACAAAGTACACCTAACCTTTCCAAGTGTACACACAAAGTGCACATAACCTTTTCAAGTC
*
9911561 GTATACACAAAGTATACCT
1 GTATACACAAAGTACACCT
9911580 TTCCTTTTCA
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
65 69 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.31
Consensus pattern (65 bp):
GTATACACAAAGTACACCTAACCTTTCCAAGTGTACACACAAAGTGCACATAACCTTTTCAAGTC
Found at i:9911550 original size:32 final size:32
Alignment explanation
Indices: 9911355--9911573 Score: 136
Period size: 33 Copynumber: 6.8 Consensus size: 32
9911345 ATGGACCTTT
* * * **
9911355 CCTTTTCTAGTTGTACACTCAAGGTGCACATTC
1 CCTTTTCAAG-TGTACACACAAAGTGCACATAA
* * *
9911388 CCTTTTCAAGTGGT--ACACGAAGTGTACATAC
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* * * *
9911419 CCTATCCAATTTGTATACACAAAGTGCACATAA
1 CCTTTTCAA-GTGTACACACAAAGTGCACATAA
* * * * * * **
9911452 CCTTTTTAAGTGTACATATATAGTGTACCTTT
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* * *
9911484 CCTTTTCAAGTCGTATACACAAAGTACACCTAA
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* *
9911517 CCTTTCCAAGTGTGCACACAAAGTGCACATAA
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* *
9911549 CCTTTTCATGTGGTATACACAAAGT
1 CCTTTTCAAGT-GTACACACAAAGT
9911574 ATACCTTTCC
Statistics
Matches: 138, Mismatches: 42, Indels: 12
0.72 0.22 0.06
Matches are distributed among these distances:
31 21 0.15
32 52 0.38
33 65 0.47
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGCACATAA
Found at i:9911627 original size:29 final size:29
Alignment explanation
Indices: 9911582--9911650 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 29
9911572 GTATACCTTT
*
9911582 CCTTTTCACATTTGATAGCCAAAGCTATC
1 CCTTTTCACATTCGATAGCCAAAGCTATC
* *
9911611 CCTTTTCGCATTCGATAGCCGAAGCTATC
1 CCTTTTCACATTCGATAGCCAAAGCTATC
*
9911640 CTTTTTCACAT
1 CCTTTTCACAT
9911651 GGTACACACA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCAAAGCTATC
Found at i:9918691 original size:98 final size:98
Alignment explanation
Indices: 9918573--9918776 Score: 248
Period size: 98 Copynumber: 2.1 Consensus size: 98
9918563 GTGCACATTC
* * * * *
9918573 CCTTTTCACGTGGTACACACAAAGTGTACATACCCTATCCAATTTGTACACACAAAGTGCACATA
1 CCTTTTCAAGTAGTACACACAAAGTATACATAACCTATCCAA-GTGTACACACAAAGTGCACATA
* * * *
9918638 ACCTTTTTAAGT-GTACACATATAGTGTACCTTT
65 ACCTTTTCAAGTGGTACACAGAAAGTATACCTTT
* * * * *
9918671 CCTTTTCAAGTAGTATACACAAAGTATACCTAACCTTTTCAAGTGTGCACACAAAGTGCACATAA
1 CCTTTTCAAGTAGTACACACAAAGTATACATAACCTATCCAAGTGTACACACAAAGTGCACATAA
* *
9918736 CCTTTTCATGTGGTATACAGAAAGTATACCTTT
66 CCTTTTCAAGTGGTACACAGAAAGTATACCTTT
9918769 CCTTTTCA
1 CCTTTTCA
9918777 CATTCGATAG
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
97 30 0.34
98 59 0.66
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (98 bp):
CCTTTTCAAGTAGTACACACAAAGTATACATAACCTATCCAAGTGTACACACAAAGTGCACATAA
CCTTTTCAAGTGGTACACAGAAAGTATACCTTT
Found at i:9918708 original size:33 final size:32
Alignment explanation
Indices: 9918573--9918776 Score: 156
Period size: 33 Copynumber: 6.2 Consensus size: 32
9918563 GTGCACATTC
* * *
9918573 CCTTTTCACGTGGTACACACAAAGTGTACATAC
1 CCTTTTCAAGT-GTACACACAAAGTGTACCTAA
* * * * *
9918606 CCTATCCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAA-GTGTACACACAAAGTGTACCTAA
* * * **
9918639 CCTTTTTAAGTGTACACATATAGTGTACCTTT
1 CCTTTTCAAGTGTACACACAAAGTGTACCTAA
* *
9918671 CCTTTTCAAGTAGTATACACAAAGTATACCTAA
1 CCTTTTCAAGT-GTACACACAAAGTGTACCTAA
* * *
9918704 CCTTTTCAAGTGTGCACACAAAGTGCACATAA
1 CCTTTTCAAGTGTACACACAAAGTGTACCTAA
* * * * **
9918736 CCTTTTCATGTGGTATACAGAAAGTATACCTTT
1 CCTTTTCAAGT-GTACACACAAAGTGTACCTAA
9918769 CCTTTTCA
1 CCTTTTCA
9918777 CATTCGATAG
Statistics
Matches: 131, Mismatches: 37, Indels: 6
0.75 0.21 0.03
Matches are distributed among these distances:
32 52 0.40
33 78 0.60
34 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGTACCTAA
Found at i:9918737 original size:32 final size:32
Alignment explanation
Indices: 9918540--9918743 Score: 165
Period size: 33 Copynumber: 6.2 Consensus size: 32
9918530 ATGGACCTTT
* * * **
9918540 CCTTTTCTAGTTGTACACTCAAGGTGCACATTC
1 CCTTTTCAAG-TGTACACACAAAGTGCACATAA
* * *
9918573 CCTTTTCACGTGGTACACACAAAGTGTACATAC
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
* * *
9918606 CCTATCCAATTTGTACACACAAAGTGCACATAA
1 CCTTTTCAA-GTGTACACACAAAGTGCACATAA
* * * * * **
9918639 CCTTTTTAAGTGTACACATATAGTGTACCTTT
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
* ** *
9918671 CCTTTTCAAGTAGTATACACAAAGTATACCTAA
1 CCTTTTCAAGT-GTACACACAAAGTGCACATAA
*
9918704 CCTTTTCAAGTGTGCACACAAAGTGCACATAA
1 CCTTTTCAAGTGTACACACAAAGTGCACATAA
9918736 CCTTTTCA
1 CCTTTTCA
9918744 TGTGGTATAC
Statistics
Matches: 134, Mismatches: 34, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
32 51 0.38
33 82 0.61
34 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGCACATAA
Found at i:9918740 original size:65 final size:65
Alignment explanation
Indices: 9918573--9918776 Score: 192
Period size: 65 Copynumber: 3.1 Consensus size: 65
9918563 GTGCACATTC
* * * * * * * ** *
9918573 CCTTTTCACGTGGTACACACAAAGTGTACATACCCTATCCAATTTGTACACACAAAGTGCACATA
1 CCTTTTCAAGT-GTACACACAAAGTGTACATAACCTTTTCAAGTAGTATACACAAAGTATACCTA
9918638 A
65 A
* * * * **
9918639 CCTTTTTAAGTGTACACATATAGTGTACCTTTCCTTTTCAAGTAGTATACACAAAGTATACCTAA
1 CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAGTAGTATACACAAAGTATACCTAA
* * * * * **
9918704 CCTTTTCAAGTGTGCACACAAAGTGCACATAACCTTTTCATGTGGTATACAGAAAGTATACCTTT
1 CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAGTAGTATACACAAAGTATACCTAA
9918769 CCTTTTCA
1 CCTTTTCA
9918777 CATTCGATAG
Statistics
Matches: 110, Mismatches: 28, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
65 101 0.92
66 9 0.08
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (65 bp):
CCTTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCAAGTAGTATACACAAAGTATACCTAA
Found at i:9918830 original size:29 final size:29
Alignment explanation
Indices: 9918769--9918837 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
9918759 GTATACCTTT
** *
9918769 CCTTTTCACATTCGATAGCCAAAGTTATC
1 CCTTTTCACATTCGATAGCCAAACCTATA
* * *
9918798 CCTTTTCGCATTCGATAGTCGAACCTATA
1 CCTTTTCACATTCGATAGCCAAACCTATA
9918827 CCTTTTCACAT
1 CCTTTTCACAT
9918838 GGTATACACA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.36
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCAAACCTATA
Found at i:9931701 original size:12 final size:12
Alignment explanation
Indices: 9931684--9931722 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
9931674 CGTTAGGTGT
9931684 AGGAAAGGAAGA
1 AGGAAAGGAAGA
9931696 AGGAAAGGAAGA
1 AGGAAAGGAAGA
*
9931708 ATGAAA-GAA-A
1 AGGAAAGGAAGA
9931718 AGGAA
1 AGGAA
9931723 TAAAGATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 5 0.20
11 3 0.12
12 17 0.68
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.03
Consensus pattern (12 bp):
AGGAAAGGAAGA
Found at i:9935106 original size:13 final size:13
Alignment explanation
Indices: 9935088--9935121 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
9935078 ACCTCCTTGG
9935088 ATTAAATTATTAA
1 ATTAAATTATTAA
9935101 ATTAAAATTATTAA
1 ATT-AAATTATTAA
9935115 A-TAAATT
1 ATTAAATT
9935122 GAAATTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAAATTATTAA
Found at i:9935178 original size:23 final size:23
Alignment explanation
Indices: 9935152--9935203 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
9935142 TTAAAGAGTC
9935152 AATCAAAAAAAGGTATGTTAATT
1 AATCAAAAAAAGGTATGTTAATT
*
9935175 AATCTAAAAAAGGTATGTTAATT
1 AATCAAAAAAAGGTATGTTAATT
9935198 AATCAA
1 AATCAA
9935204 CGGTCCAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.31
Consensus pattern (23 bp):
AATCAAAAAAAGGTATGTTAATT
Found at i:9935791 original size:40 final size:39
Alignment explanation
Indices: 9935709--9935799 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 39
9935699 TCAGTATCGG
*
9935709 ACACTTAGTGCCTCATATAGCCAAAGCTATTCCATTTCGC
1 ACACTTAGTG-CTCATATAGCCAAAGCTATTCCAATTCGC
* **
9935749 ACACTTAGTGCTATATATAGCCAAAGCTATTTTGAATT-GC
1 ACACTTAGTGCT-CATATAGCCAAAGCTA-TTCCAATTCGC
9935789 ACACTTAGTGC
1 ACACTTAGTGC
9935800 CAAATGCAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
39 2 0.04
40 38 0.84
41 5 0.11
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (39 bp):
ACACTTAGTGCTCATATAGCCAAAGCTATTCCAATTCGC
Found at i:9939500 original size:106 final size:107
Alignment explanation
Indices: 9939325--9939529 Score: 241
Period size: 106 Copynumber: 1.9 Consensus size: 107
9939315 TTGACACATA
* * * * *
9939325 TCAAGCATTGAAATCCATTTCTCAAGACATAACTTATCAAGTCTAAAGACTCAATCTTAAGACAG
1 TCAAGCATTGAAATCCATGTCCCAAAACATAACTTATCAAGTCTAAAGACTCAATCTCAAGACAA
*
9939390 ACCTC-ATTGTTTTGCTATTTTAACTTCAATGTTGGCATGTC
66 ACCTCTATTGTTTCGCTATTTTAACTTCAATGTTGGCATGTC
* ** * * * * *
9939431 TCAAGCATTGAAATCCATGTCCCAAAACATAACTTCTCAAGTCTGGATATTGAGTCTCGAGACAA
1 TCAAGCATTGAAATCCATGTCCCAAAACATAACTTATCAAGTCTAAAGACTCAATCTCAAGACAA
* * * *
9939496 ACCTCTCTTGTTTCGCTGTTTTAGCTTCACTGTT
66 ACCTCTATTGTTTCGCTATTTTAACTTCAATGTT
9939530 TGGATATCTT
Statistics
Matches: 80, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
106 57 0.71
107 23 0.29
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (107 bp):
TCAAGCATTGAAATCCATGTCCCAAAACATAACTTATCAAGTCTAAAGACTCAATCTCAAGACAA
ACCTCTATTGTTTCGCTATTTTAACTTCAATGTTGGCATGTC
Found at i:9941628 original size:2 final size:2
Alignment explanation
Indices: 9941621--9941650 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9941611 ATGAAATCTA
9941621 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9941651 GTTAGTGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9942957 original size:215 final size:215
Alignment explanation
Indices: 9942586--9943015 Score: 675
Period size: 215 Copynumber: 2.0 Consensus size: 215
9942576 GTAGTTATTT
* * *
9942586 CCTTTGTTTTGTAGATCATCCGAAAGCTTGACTAGTTGGAATCTCATCGGAGAATAATCACACTA
1 CCTTTGTTTTGTAGATCATCCAAAAGCTTGACTAGTTGGAATCTCATCGAAGAACAATCACACTA
*
9942651 TCCATCCGTCATTTTGGTAGTTTTTGGTTAGTTTGGCAAATGGTTATAAATGGCATGTATATGGC
66 TCCATCCGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATATGGC
* * *
9942716 TAAAACATTACCTTGGTCCTTTGGTTGTTTTGAGTTTGTGCTCAGCCTATTTGTGGTTAAATACC
131 TAAAACATTACCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATACC
9942781 CTAGTTGTTGTAGGTTTGTA
196 CTAGTTGTTGTAGGTTTGTA
* * * *
9942801 CCTTTGTTTTTTAGATCATCCAAAAGCTTGATTGGTTGGAATCTTC-TCGAAGCACAATCACACT
1 CCTTTGTTTTGTAGATCATCCAAAAGCTTGACTAGTTGGAATC-TCATCGAAGAACAATCACACT
** *
9942865 ATCCATTTGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATATATGGCATGTATAAT-
65 ATCCATCCGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTAT-ATG
* * *
9942929 GCTACAACATTATCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATG
129 GCTAAAACATTACCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATA
9942994 CCCTAGTTGTTGTAGGTTTGTA
194 CCCTAGTTGTTGTAGGTTTGTA
9943016 AATGATTATA
Statistics
Matches: 196, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
215 192 0.98
216 4 0.02
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (215 bp):
CCTTTGTTTTGTAGATCATCCAAAAGCTTGACTAGTTGGAATCTCATCGAAGAACAATCACACTA
TCCATCCGTCATTTTGGTAGTTTTTGGTTAATTTGGCAAATGGTTATAAATGGCATGTATATGGC
TAAAACATTACCTTGGACCTTTGGTTGTTTTGAGTTTGTGCTAAGCCTATTTGTAGTTAAATACC
CTAGTTGTTGTAGGTTTGTA
Found at i:9946022 original size:52 final size:52
Alignment explanation
Indices: 9945944--9946051 Score: 216
Period size: 52 Copynumber: 2.1 Consensus size: 52
9945934 TTATAAGAGT
9945944 TGCAAGAGTTGACAAATAGATGTTTTGTTTGGCTTAGTGTTTCTCATTGGGG
1 TGCAAGAGTTGACAAATAGATGTTTTGTTTGGCTTAGTGTTTCTCATTGGGG
9945996 TGCAAGAGTTGACAAATAGATGTTTTGTTTGGCTTAGTGTTTCTCATTGGGG
1 TGCAAGAGTTGACAAATAGATGTTTTGTTTGGCTTAGTGTTTCTCATTGGGG
9946048 TGCA
1 TGCA
9946052 CCTTTATTAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.21, C:0.10, G:0.29, T:0.40
Consensus pattern (52 bp):
TGCAAGAGTTGACAAATAGATGTTTTGTTTGGCTTAGTGTTTCTCATTGGGG
Found at i:9948543 original size:35 final size:35
Alignment explanation
Indices: 9948487--9948557 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
9948477 TTTTTTCTTT
9948487 TTATTCTGTCACGACTAGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGACTAGAGTCGTGGGCACGACGC
* * *
9948522 TTATTCTGTCGCGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGACTAGAGTCGTGGGCACGACGC
9948557 T
1 T
9948558 GGGCACGACG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.15, C:0.25, G:0.32, T:0.27
Consensus pattern (35 bp):
TTATTCTGTCACGACTAGAGTCGTGGGCACGACGC
Found at i:9959925 original size:2 final size:2
Alignment explanation
Indices: 9959918--9959946 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9959908 ATTGTCTCAA
9959918 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9959947 TGGGTAGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9966244 original size:5 final size:5
Alignment explanation
Indices: 9966234--9966308 Score: 82
Period size: 5 Copynumber: 14.6 Consensus size: 5
9966224 AAGCCATCCC
* *
9966234 TTTTA TTTTA TTTTA TTTTA TTTTA TTATT- TGTTA TATTA -TTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA
9966283 CTAATTTA TTTTA TTTTA TTTTA TTT
1 -T--TTTA TTTTA TTTTA TTTTA TTT
9966309 ATTATTCTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
4 5 0.08
5 48 0.79
6 3 0.05
7 1 0.02
8 4 0.07
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:9966336 original size:47 final size:50
Alignment explanation
Indices: 9966235--9966347 Score: 144
Period size: 52 Copynumber: 2.3 Consensus size: 50
9966225 AGCCATCCCT
* *
9966235 TTTATTTTATTTTATTTTATTTTATTATTTGTTATATTATTTATTTTACTAA
1 TTTATTTTATTTTATTTTATTTTATTATTTCTTATATTA-TGATTTTAC-AA
9966287 TTTATTTTATTTTATTTTA-TTTATTA-TTCTTATACTTA-GATTTTA-AA
1 TTTATTTTATTTTATTTTATTTTATTATTTCTTATA-TTATGATTTTACAA
9966334 TTTATTTTAATTTT
1 TTTATTTT-ATTTT
9966348 TCTACTATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
47 10 0.18
48 5 0.09
49 6 0.11
50 7 0.12
51 10 0.18
52 19 0.33
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.70
Consensus pattern (50 bp):
TTTATTTTATTTTATTTTATTTTATTATTTCTTATATTATGATTTTACAA
Found at i:9967007 original size:26 final size:27
Alignment explanation
Indices: 9966978--9967037 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 27
9966968 CATGATAGAC
9966978 TATGTTTCAGAAATTAAAATTTTTA-G
1 TATGTTTCAGAAATTAAAATTTTTAGG
9967004 TATGTTTCAGAAATTAAAATTTTTAGG
1 TATGTTTCAGAAATTAAAATTTTTAGG
9967031 T-TGTTTC
1 TATGTTTC
9967038 CCTGAATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 31 0.94
27 2 0.06
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.48
Consensus pattern (27 bp):
TATGTTTCAGAAATTAAAATTTTTAGG
Found at i:9971333 original size:6 final size:6
Alignment explanation
Indices: 9971324--9971371 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
9971314 ATAAAATCAA
*
9971324 AAAATT AAAATT AAAATT AAAATT AAAATAA ATAAATT -AAATT AAAAT
1 AAAATT AAAATT AAAATT AAAATT AAAAT-T A-AAATT AAAATT AAAAT
9971372 AAGATTTTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
5 5 0.14
6 27 0.73
7 1 0.03
8 4 0.11
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:9971344 original size:26 final size:25
Alignment explanation
Indices: 9971306--9971371 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 25
9971296 AGCCTAAACT
* *
9971306 AATTTAATATAAAATCAAAA-AATTAA
1 AATTAAAT-TAAAATCAAAATAAAT-A
*
9971332 AATTAAAATTAAAATTAAAATAAATA
1 AATT-AAATTAAAATCAAAATAAATA
9971358 AATTAAATTAAAAT
1 AATTAAATTAAAAT
9971372 AAGATTTTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 10 0.29
26 19 0.54
27 6 0.17
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (25 bp):
AATTAAATTAAAATCAAAATAAATA
Found at i:9971362 original size:14 final size:15
Alignment explanation
Indices: 9971315--9971373 Score: 59
Period size: 14 Copynumber: 3.9 Consensus size: 15
9971305 TAATTTAATA
*
9971315 TAAAATCAAA-AAAT
1 TAAAATAAAATAAAT
9971329 TAAAATTAAAATTAAAAT
1 TAAAA-TAAAA-T-AAAT
9971347 TAAAAT-AAATAAAT
1 TAAAATAAAATAAAT
*
9971361 TAAATTAAAATAA
1 TAAAATAAAATAA
9971374 GATTTTCCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
14 14 0.37
15 11 0.29
16 3 0.08
17 1 0.03
18 9 0.24
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (15 bp):
TAAAATAAAATAAAT
Found at i:9975889 original size:33 final size:33
Alignment explanation
Indices: 9975847--9975912 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
9975837 TCTAAGAGTA
9975847 GATCTAGCATAATTAAGCGGAGTTGATTGCACC
1 GATCTAGCATAATTAAGCGGAGTTGATTGCACC
9975880 GATCTAGCATAATTAAGCGGAGTTGATTGCACC
1 GATCTAGCATAATTAAGCGGAGTTGATTGCACC
9975913 CCTAGACATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (33 bp):
GATCTAGCATAATTAAGCGGAGTTGATTGCACC
Found at i:9980698 original size:29 final size:29
Alignment explanation
Indices: 9980645--9980702 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
9980635 TGATTACTTG
* *
9980645 TGGTTGAGTCTTGTTAGTGTCATTAGTTTT
1 TGGTTGAATCTTGTTAGTGTAATTA-TTTT
*
9980675 TGGTTGAAT-TTGTTAGTTTAATTATTTT
1 TGGTTGAATCTTGTTAGTGTAATTATTTT
9980703 CATGGTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.16
29 13 0.52
30 8 0.32
ACGTcount: A:0.17, C:0.03, G:0.22, T:0.57
Consensus pattern (29 bp):
TGGTTGAATCTTGTTAGTGTAATTATTTT
Found at i:9985439 original size:5 final size:5
Alignment explanation
Indices: 9985429--9985490 Score: 124
Period size: 5 Copynumber: 12.4 Consensus size: 5
9985419 TAATTGATAT
9985429 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
9985479 TATTA TATTA TA
1 TATTA TATTA TA
9985491 ACTAAACTAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 57 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:9987996 original size:12 final size:12
Alignment explanation
Indices: 9987979--9988027 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
9987969 ATTTCGAACA
9987979 TTTAAATATTAG
1 TTTAAATATTAG
*
9987991 TTTAAATAATACCG
1 TTTAAATATTA--G
*
9988005 TTT-AGTATTAG
1 TTTAAATATTAG
9988016 TTTAAATATTAG
1 TTTAAATATTAG
9988028 ACAACTACTG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 4 0.13
12 17 0.57
13 5 0.17
14 4 0.13
ACGTcount: A:0.39, C:0.04, G:0.10, T:0.47
Consensus pattern (12 bp):
TTTAAATATTAG
Found at i:9990972 original size:37 final size:37
Alignment explanation
Indices: 9990928--9990998 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
9990918 ATTGTTATTA
*
9990928 ATTTTAATAGGATTATTATTATAA-ATAATTTAATCAT
1 ATTTTAATAGAATTATTATTA-AATATAATTTAATCAT
*
9990965 ATTTTAATATAATTATTATTAAATATAATTTAAT
1 ATTTTAATAGAATTATTATTAAATATAATTTAAT
9990999 AAAAATTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 2 0.06
37 29 0.94
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (37 bp):
ATTTTAATAGAATTATTATTAAATATAATTTAATCAT
Found at i:9990976 original size:21 final size:20
Alignment explanation
Indices: 9990952--9991038 Score: 65
Period size: 21 Copynumber: 4.3 Consensus size: 20
9990942 ATTATTATAA
9990952 ATAATTTAATCATATTTTAAT
1 ATAATTTAAT-ATATTTTAAT
*
9990973 ATAA-TT-AT-TA-TTAAAT
1 ATAATTTAATATATTTTAAT
* **
9990989 ATAATTTAATAAAAATTATAT
1 ATAATTTAATATATTTTA-AT
*
9991010 ATAATTTAATAATTTTTTTAAT
1 ATAATTTAAT-A-TATTTTAAT
9991032 ATAATTT
1 ATAATTT
9991039 TTTATATTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
16 9 0.18
17 4 0.08
18 2 0.04
19 3 0.06
20 4 0.08
21 16 0.31
22 10 0.20
23 3 0.06
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (20 bp):
ATAATTTAATATATTTTAAT
Found at i:9991012 original size:37 final size:37
Alignment explanation
Indices: 9990939--9991015 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
9990929 TTTTAATAGG
* * *
9990939 ATTATTATTATAAATAATTTAATCATATTTTAATATA
1 ATTATTATTATAAATAATTTAATAAAATTATAATATA
9990976 ATTATTATTA-AATATAATTTAATAAAAATTAT-ATATA
1 ATTATTATTATAA-ATAATTTAAT-AAAATTATAATATA
9991013 ATT
1 ATT
9991016 TAATAATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 2 0.06
37 28 0.80
38 5 0.14
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTATTATTATAAATAATTTAATAAAATTATAATATA
Found at i:9994230 original size:50 final size:50
Alignment explanation
Indices: 9994116--9994446 Score: 377
Period size: 50 Copynumber: 6.7 Consensus size: 50
9994106 AGGGTAAGAT
* * * *
9994116 GCTGACGCCATGTCCCGGACATGGTCTTACATTGGCTCAT-AC--ATCAAA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATATCGAA
* * *
9994164 G-TCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCAAATATCGAG
1 GCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCGAA
* * *
9994214 GCTGATGCCATGTCCCAAATATGGTCTTACACTGGCTCTCACATATTGAA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCGAA
* * *
9994264 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATTGAA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCGAA
* *
9994314 G-TCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCACATATTGAA
1 GCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCGAA
* * * **
9994364 GCCGTTGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATC-TATCGGT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CATATCGAA
* * *
9994414 CCAGATGCCATGTCCCAAACATGGTCTTACACT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACT
9994447 AGCACTCATA
Statistics
Matches: 245, Mismatches: 30, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
47 2 0.01
48 33 0.13
50 208 0.85
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (50 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCGAA
Found at i:9994391 original size:150 final size:148
Alignment explanation
Indices: 9994122--9994454 Score: 442
Period size: 150 Copynumber: 2.2 Consensus size: 148
9994112 AGATGCTGAC
* * *
9994122 GCCATGTCCCGGACATGGTCTTACATTGGCTCAT-ACATCAAAGTCGATGCCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATCAAAGTCGATGCCATGTCCCAGACAT
* * *
9994186 GGTCTTACACTGACTCTCAAATATCGAGGCTGATGCCATGTCCCAAATATGGTCTTACACTGGCT
65 GGTCTTACACTGACTCTCAAATATCGAAGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT
*
9994251 CTCA-CATATTGAAG-CC-GAT
130 CTCATC-TATCG--GTCCAGAT
9994270 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-ATTGAAGTCGATGCCATGTCCCAGAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCA---AAGTCGATGCCATGTCCCAGAC
** * * *
9994334 ATGGTCTTACACTGGTTCTCACATATTGAAGCCGTTGCCATGTCCCAAACATGGTCTTACACTGG
63 ATGGTCTTACACTGACTCTCAAATATCGAAGCCGATGCCATGTCCCAAACATGGTCTTACACTGG
9994399 CTCTCATCTATCGGTCCAGAT
128 CTCTCATCTATCGGTCCAGAT
* *
9994420 GCCATGTCCCAAACATGGTCTTACACTAGCACTCA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCA
9994455 TATAACCCTA
Statistics
Matches: 164, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
147 2 0.01
148 34 0.21
149 2 0.01
150 125 0.76
151 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (148 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCAAAGTCGATGCCATGTCCCAGACATG
GTCTTACACTGACTCTCAAATATCGAAGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
TCATCTATCGGTCCAGAT
Found at i:9998918 original size:2 final size:2
Alignment explanation
Indices: 9998911--9998951 Score: 66
Period size: 2 Copynumber: 20.5 Consensus size: 2
9998901 GTCACTATTT
9998911 TA TA TA TA T- TGA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9998952 CAGGTGTTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 1 0.03
2 35 0.95
3 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10004268 original size:27 final size:27
Alignment explanation
Indices: 10004210--10004262 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
10004200 CAACTTAGTT
10004210 AAATTAGAACTAAGTAGGTAGTGTATA
1 AAATTAGAACTAAGTAGGTAGTGTATA
10004237 AAATTAGAACTAAGTAGGTAGTGTAT
1 AAATTAGAACTAAGTAGGTAGTGTAT
10004263 TTAATTTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.04, G:0.23, T:0.30
Consensus pattern (27 bp):
AAATTAGAACTAAGTAGGTAGTGTATA
Found at i:10009638 original size:16 final size:16
Alignment explanation
Indices: 10009617--10009647 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10009607 TCACACCCAG
10009617 TTTGGTGGACTTGTAT
1 TTTGGTGGACTTGTAT
*
10009633 TTTGGTGGATTTGTA
1 TTTGGTGGACTTGTA
10009648 ATGGCGTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.32, T:0.52
Consensus pattern (16 bp):
TTTGGTGGACTTGTAT
Found at i:10020612 original size:14 final size:15
Alignment explanation
Indices: 10020593--10020630 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
10020583 TGGCCAAAAG
*
10020593 TGTTATTTTG-TTTA
1 TGTTATATTGCTTTA
10020607 TGTTATATTGCTTTA
1 TGTTATATTGCTTTA
10020622 TGTATATAT
1 TGT-TATAT
10020631 ATTGTGGAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
15 7 0.33
16 5 0.24
ACGTcount: A:0.21, C:0.03, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTATATTGCTTTA
Found at i:10033323 original size:27 final size:26
Alignment explanation
Indices: 10033284--10033370 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
10033274 GACAAATAGT
* *
10033284 ATAGTTTGCCAAGACCATAAACACAGG
1 ATAGTCTGTCAAGA-CATAAACACAGG
*
10033311 ATAGTCTGTCAAGATAATAAACACAGG
1 ATAGTCTGTCAAGA-CATAAACACAGG
* * * *
10033338 GTAGTCCGTCAGGACAGTAAACACGGG
1 ATAGTCTGTCAAGACA-TAAACACAGG
10033365 ATAGTC
1 ATAGTC
10033371 CGCGGTGACA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
26 1 0.02
27 48 0.98
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (26 bp):
ATAGTCTGTCAAGACATAAACACAGG
Found at i:10033371 original size:27 final size:27
Alignment explanation
Indices: 10033301--10033389 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
10033291 GCCAAGACCA
* * * * *
10033301 TAAACACAGGATAGTCTGTCAAGATAA
1 TAAACACGGGATAGTCCGTCAGGACAG
10033328 TAAACACAGGG-TAGTCCGTCAGGACAG
1 TAAACAC-GGGATAGTCCGTCAGGACAG
*
10033355 TAAACACGGGATAGTCCG-CGGTGACAG
1 TAAACACGGGATAGTCCGTCAG-GACAG
10033382 TAAACACG
1 TAAACACG
10033390 AAGTAGTTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.09
27 46 0.87
28 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.26, T:0.17
Consensus pattern (27 bp):
TAAACACGGGATAGTCCGTCAGGACAG
Found at i:10037335 original size:28 final size:30
Alignment explanation
Indices: 10037285--10037347 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
10037275 TATATTTTCA
*
10037285 TTTTTTGAAATTTTCTAAATTTTT-AACTT
1 TTTTTTAAAATTTTCTAAATTTTTAAACTT
**
10037314 TTTTTTAAAATTTT-TATGTTTTTAGAACTT
1 TTTTTTAAAATTTTCTAAATTTTTA-AACTT
10037344 TTTT
1 TTTT
10037348 ATTTGTTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 7 0.24
29 13 0.45
30 9 0.31
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (30 bp):
TTTTTTAAAATTTTCTAAATTTTTAAACTT
Found at i:10037473 original size:26 final size:28
Alignment explanation
Indices: 10037439--10037493 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
10037429 TTGTTTATAA
10037439 TAAATATTTTTTAA-TTT-TGTTTATTTT
1 TAAATA-TTTTTAAGTTTATGTTTATTTT
*
10037466 TAAA-ATTTTTAAGTTTATTTTTATTTT
1 TAAATATTTTTAAGTTTATGTTTATTTT
10037493 T
1 T
10037494 TTTGAATAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 7 0.28
26 4 0.16
27 14 0.56
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (28 bp):
TAAATATTTTTAAGTTTATGTTTATTTT
Found at i:10037768 original size:22 final size:21
Alignment explanation
Indices: 10037725--10037773 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
10037715 ATTTTTATTG
* *
10037725 AATGAATTGTAAACGAATATA
1 AATGAATTATAAACGAACATA
*
10037746 AATGAGATTATAAATGAACATA
1 AATGA-ATTATAAACGAACATA
10037768 AATGAA
1 AATGAA
10037774 CTGAACAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.55, C:0.04, G:0.14, T:0.27
Consensus pattern (21 bp):
AATGAATTATAAACGAACATA
Found at i:10039641 original size:21 final size:23
Alignment explanation
Indices: 10039577--10039641 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 23
10039567 ATTAAGGAGA
*
10039577 ATTAATAATATATTTATATTTTGT
1 ATTAATAATATATTTA-ATTTAGT
*
10039601 ATTAATTATTATAATTTTAA-TTAGT
1 ATTAA-TAATAT-A-TTTAATTTAGT
10039626 A-TAATAATATATTTAA
1 ATTAATAATATATTTAA
10039642 CTCCAGATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
21 5 0.14
22 1 0.03
23 5 0.14
24 8 0.23
25 10 0.29
26 2 0.06
27 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (23 bp):
ATTAATAATATATTTAATTTAGT
Found at i:10051365 original size:21 final size:21
Alignment explanation
Indices: 10051340--10051379 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
10051330 TTAACGGGAT
10051340 GCTGACATGGCAAGTTAACCA
1 GCTGACATGGCAAGTTAACCA
**
10051361 GCTGATGTGGCAAGTTAAC
1 GCTGACATGGCAAGTTAAC
10051380 TTGTCACATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (21 bp):
GCTGACATGGCAAGTTAACCA
Found at i:10051697 original size:17 final size:17
Alignment explanation
Indices: 10051675--10051710 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
10051665 ATTTATTATA
10051675 AGGTAAATTACACCAAT
1 AGGTAAATTACACCAAT
10051692 AGGTAAATTACACCAAT
1 AGGTAAATTACACCAAT
10051709 AG
1 AG
10051711 TTGAGTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22
Consensus pattern (17 bp):
AGGTAAATTACACCAAT
Found at i:10052250 original size:16 final size:15
Alignment explanation
Indices: 10052229--10052263 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
10052219 CCTCTTCTCC
10052229 TTCTTCTTCTTCTCTT
1 TTCTTCTTCTTCT-TT
*
10052245 TTCTTCTTTTTCTTT
1 TTCTTCTTCTTCTTT
10052260 TTCT
1 TTCT
10052264 CTAACCCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
TTCTTCTTCTTCTTT
Found at i:10052257 original size:22 final size:22
Alignment explanation
Indices: 10052223--10052265 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10052213 ATTTTTCCTC
10052223 TTCTCCTTCTTCTTCTTCTCTT
1 TTCTCCTTCTTCTTCTTCTCTT
* * *
10052245 TTCTTCTTTTTCTTTTTCTCT
1 TTCTCCTTCTTCTTCTTCTCT
10052266 AACCCTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (22 bp):
TTCTCCTTCTTCTTCTTCTCTT
Found at i:10053306 original size:2 final size:2
Alignment explanation
Indices: 10053288--10053331 Score: 61
Period size: 2 Copynumber: 21.5 Consensus size: 2
10053278 TAAAAATAAA
* *
10053288 AT AT AA AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10053331 A
1 A
10053332 AAACAACAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (2 bp):
AT
Found at i:10055456 original size:95 final size:101
Alignment explanation
Indices: 10055328--10055575 Score: 269
Period size: 95 Copynumber: 2.5 Consensus size: 101
10055318 GGTTTTTAAA
* * ** *
10055328 TTTTAGGG-TTTTAAGGAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGGTAATTAAATTAATT
1 TTTTAGGGTTTTTAAGG-AAAAAATCAAATAAATTAGGGTTTAGGGTTACGTAAGTAAATTAATT
*
10055392 ACT-AATTTT-AAAAATTAGA-T-TA-T-GGTTTAGTG
65 A-TAAATTTTAAAAAATTAGATTATATTAGGTTTAGGG
* * * *
10055424 -TTTATGGTTTTTAAGGAAAAAATCAAAAAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTTAGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACGTAAGTAAATTAATTA
10055488 TAAATTTTAAAAAAATTAGATTACTATTTTAGGGTTTAGGG
66 TAAATTTT-AAAAAATTAGATTA-TA--TTA-GGTTTAGGG
* *
10055529 TTTTAGGGTATTTAAGGAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 TTTTAGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTT
10055576 TAGGGTAACT
Statistics
Matches: 125, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
94 1 0.01
95 52 0.42
96 8 0.06
97 10 0.08
98 1 0.01
100 2 0.02
103 1 0.01
105 8 0.06
106 42 0.34
ACGTcount: A:0.39, C:0.02, G:0.19, T:0.40
Consensus pattern (101 bp):
TTTTAGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACGTAAGTAAATTAATTA
TAAATTTTAAAAAATTAGATTATATTAGGTTTAGGG
Found at i:10055837 original size:126 final size:126
Alignment explanation
Indices: 10055622--10056157 Score: 806
Period size: 126 Copynumber: 4.3 Consensus size: 126
10055612 AAGCTTCTAT
* *
10055622 GTGGACGTTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAAAT
1 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAAAT
*
10055687 AGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
66 AGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
* * * *
10055748 GTGGACGCTCTTTTGCTACAGTAGTATCTAAAAAAATAATTTTGATAAGACGTGTCTGTGCAAAT
1 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAAAT
* * *
10055813 AGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGTAAAAGTACTGAAAGAAGCTTCCAC
66 AGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
* *
10055874 GTGGACGCTCTTTTGCTACAGTAGTCTCTG-AAAAATAATTTTGAGAAGATGTGTCTGCACAAAT
1 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAAAT
* * *
10055938 AGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCCAC
66 AGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
* * * **
10055999 GTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTTTGCATAAAT
1 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAAAT
* * * *
10056064 AGTGTCAAAAACGCTTCAAGCAAGATGCATTTTTAGCAAAAGTACTGAAAGAAACTCCCAC
66 AGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
* * *
10056125 GTGGACGTTCTTTTGCTACAGTGGTTTCTGAAA
1 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
10056158 TAACTTGGGC
Statistics
Matches: 373, Mismatches: 34, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
125 113 0.30
126 260 0.70
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (126 bp):
GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAAAT
AGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
Found at i:10056066 original size:251 final size:251
Alignment explanation
Indices: 10055612--10056157 Score: 819
Period size: 251 Copynumber: 2.2 Consensus size: 251
10055602 TAATCTAAAA
* *
10055612 AAGCTTCTATGTGGACGTTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGTTCTTTTGCTACAGTAGTCTCTG-AAAAATAAATTTGAGAAGACGTGT
*
10055677 CTGCGCAAATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGC
65 CTGCACAAATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGC
*
10055742 TCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTAAAAAAATAATTTTGATAAGACGTGTCTGT
130 TCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTAAAAAAATAATTTTGAGAAGACGTGTCTGT
* *
10055807 GCAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGTAAAAGTACTGAAAG
195 GCAAATAGTGTAAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTACTGAAAG
* * *
10055864 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGATGTGTC
1 AAGCTTCCACGTGGACGTTCTTTTGCTACAGTAGTCTCTGAAAAATAAATTTGAGAAGACGTGTC
* * * *
10055929 TGCACAAATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGC
66 TGCACAAATAGT-GTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGC
* * * *
10055993 TCCCACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGT-T-T
130 TCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTAAAAAAATAATTTTGAGAAGACGTGTCTGT
* * *
10056056 GCATAAATAGTGTCAAAAACGCTTCAAGCAAGATGCATTTTTAGCAAAAGTACTGAAAG
195 GC--AAATAGTGTAAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTACTGAAAG
* * * *
10056115 AAACTCCCACGTGGACGTTCTTTTGCTACAGTGGTTTCTGAAA
1 AAGCTTCCACGTGGACGTTCTTTTGCTACAGTAGTCTCTGAAA
10056158 TAACTTGGGC
Statistics
Matches: 266, Mismatches: 25, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
249 3 0.01
250 1 0.00
251 223 0.84
252 39 0.15
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (251 bp):
AAGCTTCCACGTGGACGTTCTTTTGCTACAGTAGTCTCTGAAAAATAAATTTGAGAAGACGTGTC
TGCACAAATAGTGTCAAAAACACTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCT
CCCACGTGGACGCTCTTTTGCTACAGTAGTATCTAAAAAAATAATTTTGAGAAGACGTGTCTGTG
CAAATAGTGTAAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTACTGAAAG
Found at i:10058558 original size:20 final size:20
Alignment explanation
Indices: 10058533--10058574 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
10058523 GAGAGCCATA
*
10058533 TTTTCATTTAGCGGCACTAT
1 TTTTCATTTAGCAGCACTAT
10058553 TTTTCATTTAGCAGCACTAT
1 TTTTCATTTAGCAGCACTAT
10058573 TT
1 TT
10058575 GTTTGACGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (20 bp):
TTTTCATTTAGCAGCACTAT
Found at i:10058672 original size:15 final size:15
Alignment explanation
Indices: 10058652--10058682 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10058642 GTTTTATTTT
10058652 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
10058667 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
10058682 A
1 A
10058683 GCTTTTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:10061930 original size:39 final size:38
Alignment explanation
Indices: 10061876--10062011 Score: 177
Period size: 39 Copynumber: 3.6 Consensus size: 38
10061866 CATGTTTTTA
*
10061876 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTG-TTATATG
*
10061915 AGTATTGTGATATATGTTTAAATGTTATGTG--ATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGTTATATG
* *
10061951 AGTATTGCGATATATGCTTAAATTTTATGTGGTTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGT-GTTATATG
* * *
10061990 TGTAATGTGATACATGCTTAAA
1 AGTATTGTGATATATGCTTAAA
10062012 AGTGAATATG
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
36 32 0.38
37 1 0.01
39 52 0.61
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (38 bp):
AGTATTGTGATATATGCTTAAATGTTATGTGTTATATG
Found at i:10063635 original size:10 final size:10
Alignment explanation
Indices: 10063620--10063680 Score: 63
Period size: 10 Copynumber: 6.1 Consensus size: 10
10063610 TAATTTTAGG
10063620 ATTTAT-TTT
1 ATTTATCTTT
10063629 CATTTATCTTT
1 -ATTTATCTTT
*
10063640 ATTTATCATT
1 ATTTATCTTT
* *
10063650 AATTATGTTT
1 ATTTATCTTT
10063660 ATTTAT-TTGT
1 ATTTATCTT-T
10063670 ATTTATCTTT
1 ATTTATCTTT
10063680 A
1 A
10063681 AGAATTTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:10063664 original size:30 final size:30
Alignment explanation
Indices: 10063622--10063681 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
10063612 ATTTTAGGAT
10063622 TTATTTTCATTTATCTT-TATTTATCATTAA
1 TTATTTTCATTTAT-TTGTATTTATCATTAA
*
10063652 TTATGTTT-ATTTATTTGTATTTATCTTTAA
1 TTAT-TTTCATTTATTTGTATTTATCATTAA
10063682 GAATTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 2 0.07
30 22 0.81
31 3 0.11
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (30 bp):
TTATTTTCATTTATTTGTATTTATCATTAA
Found at i:10065154 original size:19 final size:20
Alignment explanation
Indices: 10065116--10065164 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
10065106 AGATAATCAC
*
10065116 TTTAATATTAAATTTATTAA
1 TTTAATATTAAATCTATTAA
10065136 TTTAATATTAAA-CTATTAA
1 TTTAATATTAAATCTATTAA
**
10065155 AATAATATTA
1 TTTAATATTA
10065165 TATTTGGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTAATATTAAATCTATTAA
Found at i:10066727 original size:16 final size:16
Alignment explanation
Indices: 10066706--10066736 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
10066696 CTATGCATAC
10066706 AAAATACAAAAGACAG
1 AAAATACAAAAGACAG
10066722 AAAATACAAAAGACA
1 AAAATACAAAAGACA
10066737 TAATAGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.71, C:0.13, G:0.10, T:0.06
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:10072834 original size:33 final size:33
Alignment explanation
Indices: 10072761--10072835 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
10072751 CCACCAGGAC
* *
10072761 AGTAAACACAAAATAGAGTAAGTTCGCTGGAAT
1 AGTAAACACAAAACAGAGTAAGTTCGCTCGAAT
*
10072794 AGAAAACACAAAACAGAGTAAG-TC-CATCGAGAT
1 AGTAAACACAAAACAGAGTAAGTTCGC-TCGA-AT
10072827 AGTAAACAC
1 AGTAAACAC
10072836 GAGGTAAGTC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
31 1 0.03
32 5 0.14
33 30 0.83
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.16
Consensus pattern (33 bp):
AGTAAACACAAAACAGAGTAAGTTCGCTCGAAT
Found at i:10074174 original size:20 final size:21
Alignment explanation
Indices: 10074151--10074192 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
10074141 TTTCATTTAG
10074151 CTCACATGAGCTTCAG-TTAA
1 CTCACATGAGCTTCAGATTAA
* *
10074171 CTCATATGAGTTTCAGATTAA
1 CTCACATGAGCTTCAGATTAA
10074192 C
1 C
10074193 GCTTTTGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.33
Consensus pattern (21 bp):
CTCACATGAGCTTCAGATTAA
Found at i:10074248 original size:21 final size:21
Alignment explanation
Indices: 10074224--10074278 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
10074214 TCTTTTGAGC
* *
10074224 TTCAGTTTAACCCTAATGGGT
1 TTCAGTTTAACCCTAACGAGT
* * *
10074245 TTCAGTTCAACTCTTACGAGT
1 TTCAGTTTAACCCTAACGAGT
10074266 TTCAGTTTAACCC
1 TTCAGTTTAACCC
10074279 ACCTGGGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (21 bp):
TTCAGTTTAACCCTAACGAGT
Found at i:10074270 original size:42 final size:41
Alignment explanation
Indices: 10074162--10074278 Score: 126
Period size: 42 Copynumber: 2.8 Consensus size: 41
10074152 TCACATGAGC
* * * **
10074162 TTCAGTTAACTCATATGAGTTTCAGATTAACGCTTTTGGGT
1 TTCAGTTAACTCTTATGAGTTTCAGTTTAACCCTAATGGGT
** * *
10074203 TTCAGTTTAGTTCTTTTGAGCTTCAGTTTAACCCTAATGGGT
1 TTCAG-TTAACTCTTATGAGTTTCAGTTTAACCCTAATGGGT
*
10074245 TTCAGTTCAACTCTTACGAGTTTCAGTTTAACCC
1 TTCAGTT-AACTCTTATGAGTTTCAGTTTAACCC
10074279 ACCTGGGTTT
Statistics
Matches: 60, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 7 0.12
42 53 0.88
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (41 bp):
TTCAGTTAACTCTTATGAGTTTCAGTTTAACCCTAATGGGT
Found at i:10074286 original size:42 final size:41
Alignment explanation
Indices: 10074162--10074299 Score: 116
Period size: 42 Copynumber: 3.3 Consensus size: 41
10074152 TCACATGAGC
* * ***
10074162 TTCAGTT-AACTCATATGAGTTTCAGATTAACGCTTTTGGGT
1 TTCAGTTCAACTCTTATGAGTTTCAGTTTAAC-CCAATGGGT
* ** * *
10074203 TTCAGTTTAGTTCTTTTGAGCTTCAGTTTAACCCTAATGGGT
1 TTCAGTTCAACTCTTATGAGTTTCAGTTTAACCC-AATGGGT
* *
10074245 TTCAGTTCAACTCTTACGAGTTTCAGTTTAACCCACCTGGGT
1 TTCAGTTCAACTCTTATGAGTTTCAGTTTAACCCA-ATGGGT
**
10074287 TTTTGTTCAACTC
1 TTCAGTTCAACTC
10074300 CTATAAGCTT
Statistics
Matches: 76, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
41 9 0.12
42 67 0.88
ACGTcount: A:0.21, C:0.20, G:0.17, T:0.42
Consensus pattern (41 bp):
TTCAGTTCAACTCTTATGAGTTTCAGTTTAACCCAATGGGT
Found at i:10075994 original size:21 final size:21
Alignment explanation
Indices: 10075968--10076029 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
10075958 CCCAACCCAT
* *
10075968 GCATATAATGTGTATATCATA
1 GCATATCATGTGCATATCATA
10075989 GCATATCATGTGCATATCATA
1 GCATATCATGTGCATATCATA
*
10076010 ACATATCATGTGCATATCAT
1 GCATATCATGTGCATATCAT
10076030 GTCCTATCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (21 bp):
GCATATCATGTGCATATCATA
Found at i:10076037 original size:10 final size:11
Alignment explanation
Indices: 10075967--10076041 Score: 75
Period size: 11 Copynumber: 7.1 Consensus size: 11
10075957 ACCCAACCCA
*
10075967 TGCATATAATG
1 TGCATATCATG
*
10075978 TGTATATCAT-
1 TGCATATCATG
*
10075988 AGCATATCATG
1 TGCATATCATG
10075999 TGCATATCAT-
1 TGCATATCATG
**
10076009 AACATATCATG
1 TGCATATCATG
10076020 TGCATATCATG
1 TGCATATCATG
*
10076031 T-CCTATCATG
1 TGCATATCATG
10076041 T
1 T
10076042 ATAACAATAT
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
10 25 0.48
11 27 0.52
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (11 bp):
TGCATATCATG
Found at i:10076037 original size:21 final size:20
Alignment explanation
Indices: 10075965--10076041 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 20
10075955 AAACCCAACC
* *
10075965 CATGCATATAATGTGTATAT
1 CATGCATATCATGTGCATAT
10075985 CATAGCATATCATGTGCATAT
1 CAT-GCATATCATGTGCATAT
*
10076006 CATAACATATCATGTGCATAT
1 CAT-GCATATCATGTGCATAT
*
10076027 CATGTCCTATCATGT
1 CATG-CATATCATGT
10076042 ATAACAATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
20 3 0.06
21 47 0.94
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (20 bp):
CATGCATATCATGTGCATAT
Found at i:10076183 original size:27 final size:27
Alignment explanation
Indices: 10076154--10076367 Score: 263
Period size: 27 Copynumber: 7.9 Consensus size: 27
10076144 GGGCAAAATG
* * * * *
10076154 GTAATTTTACCCCACAAGGTTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
10076181 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
10076207 GATATTTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
10076235 GTAATTCTACCCTAC-AGAGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
*
10076262 GTAACTT-TACCCTACAAGGATATTTCA
1 GTAA-TTCTACCCTACAAGGGTATTTCA
*
10076289 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
10076316 GTAACTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
10076343 GTAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
10076368 TGGTAATTTT
Statistics
Matches: 164, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.02
27 155 0.95
28 5 0.03
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:10076373 original size:27 final size:27
Alignment explanation
Indices: 10076154--10076402 Score: 261
Period size: 27 Copynumber: 9.2 Consensus size: 27
10076144 GGGCAAAATG
* * * * * *
10076154 GTAATTTTACCCCACAAGGTTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
10076181 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
10076207 GATATTTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
10076235 GTAATTCTACCCTACAGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
10076262 GTAACTT-TACCCTACAAGGATATTTCA
1 GTAA-TTCTACCCTACAGGGGTATTTCA
* *
10076289 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
10076316 GTAACTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
**
10076343 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* ** *
10076370 GTAATTTTA-CAAACCAGGGGTATTTTA
1 GTAATTCTACCCTA-CAGGGGTATTTCA
10076397 GTAATT
1 GTAATT
10076403 TTGTAAACCA
Statistics
Matches: 192, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.03
27 184 0.96
28 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:10076400 original size:54 final size:53
Alignment explanation
Indices: 10076181--10076564 Score: 206
Period size: 54 Copynumber: 7.1 Consensus size: 53
10076171 GGTTATCTCG
* * ** *
10076181 GTAATTCTACCCTACAGGGGTATTTCGAT-ATTTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTT-TA-CAAACAGGGGTATTTTA
* ** * ** * * *
10076235 GTAATTCTACCCTACAGAGGTATTTCAGTAACTTTACCCTACAAGGATATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTA-CAAACAGGGGTATTTTA
* * * * ** * *
10076289 GTAATTCTACCCTACAAGGGTATTTTAGTAACTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTA-CAAACAGGGGTATTTTA
10076343 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTA
* * * *** *
10076397 GTAATTTTGTAAACC-A-A-AGGTATTTTGGTAATTTTACAAGTTGAGGGTATTTTG
1 GTAA--TTCT-ACCCTACAGGGGTATTTTGGTAATTTTACAAACAG-GGGTATTTTA
* ** ** * * * *
10076451 GTAATTTTACAAGTTGA-GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTG
1 GTAATTCTAC-CCTACAGGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTA
* ** * *
10076505 GT-ATT-TTCACAAACTAGGGGTATTTTGGTATTTTTACAAACTAGGGGTATTTTG
1 GTAATTCTAC-CCTAC-AGGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTA
10076559 GTAATT
1 GTAATT
10076565 TTACTAATTA
Statistics
Matches: 269, Mismatches: 47, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
51 1 0.00
52 6 0.02
53 7 0.03
54 239 0.89
55 9 0.03
56 4 0.01
57 3 0.01
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (53 bp):
GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTA
Found at i:10076403 original size:27 final size:27
Alignment explanation
Indices: 10076358--10076568 Score: 239
Period size: 27 Copynumber: 7.8 Consensus size: 27
10076348 TCTACCCTAC
*
10076358 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
* ** *
10076385 AGGGGTATTTTAGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
** *
10076412 AAAGGTATTTTGGTAATTTTAC-AAGT
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
10076438 TGAGGGTATTTTGGTAATTTTAC-AAGT
1 AG-GGGTATTTTGGTAATTTTACAAACT
* * * *
10076465 TGAGGGTATTTTAGTAATTTCACAAATT
1 AG-GGGTATTTTGGTAATTTTACAAACT
10076493 AGGGGTATTTTGGT-ATTTTCACAAACT
1 AGGGGTATTTTGGTAATTTT-ACAAACT
*
10076520 AGGGGTATTTTGGTATTTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
10076547 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTGGTAATTTTAC
10076569 TAATTAAGGG
Statistics
Matches: 158, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.04
27 144 0.91
28 8 0.05
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:10076419 original size:81 final size:81
Alignment explanation
Indices: 10076334--10076484 Score: 180
Period size: 81 Copynumber: 1.9 Consensus size: 81
10076324 ACCTTACAAG
*
10076334 GGTATTTCAGTAATTCTAC-CCTACAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTA
1 GGTATTTCAGTAATTCTACAACTACA-GGGTATTTTGGTAATTTTAC-AACCAGAGGGTATTTTA
10076397 GTAATTTTGTAAACCAAA
64 GTAATTTTGTAAACCAAA
** * * ** ***
10076415 GGTATTTTGGTAATTTTACAAGTTGAGGGTATTTTGGTAATTTTACAAGTTGAGGGTATTTTAGT
1 GGTATTTCAGTAATTCTACAACTACAGGGTATTTTGGTAATTTTACAACCAGAGGGTATTTTAGT
10076480 AATTT
66 AATTT
10076485 CACAAATTAG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
80 3 0.05
81 53 0.91
82 2 0.03
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (81 bp):
GGTATTTCAGTAATTCTACAACTACAGGGTATTTTGGTAATTTTACAACCAGAGGGTATTTTAGT
AATTTTGTAAACCAAA
Found at i:10078840 original size:22 final size:22
Alignment explanation
Indices: 10078804--10078845 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
10078794 GGAGCTATTT
10078804 TTGTTTTATTG-TTTTCTACTA
1 TTGTTTTATTGTTTTTCTACTA
*
10078825 TTGTTTTGGTTGTTTTTCTAC
1 TTGTTTT-ATTGTTTTTCTAC
10078846 AAACTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 3 0.17
23 8 0.44
ACGTcount: A:0.10, C:0.10, G:0.14, T:0.67
Consensus pattern (22 bp):
TTGTTTTATTGTTTTTCTACTA
Found at i:10080007 original size:38 final size:38
Alignment explanation
Indices: 10079956--10080029 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
10079946 GTTTTGTTTG
10079956 TTATTGTTTTTGTCAAGTAAATTTATATGAAACTTAAC
1 TTATTGTTTTTGTCAAGTAAATTTATATGAAACTTAAC
10079994 TTATTGTTTTTGTCAAGTAAATTTATATGAAACTTA
1 TTATTGTTTTTGTCAAGTAAATTTATATGAAACTTA
10080030 CTATGTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.49
Consensus pattern (38 bp):
TTATTGTTTTTGTCAAGTAAATTTATATGAAACTTAAC
Found at i:10094075 original size:21 final size:22
Alignment explanation
Indices: 10094038--10094085 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
10094028 ATGTTGACCG
10094038 GCATTGACTAATAATTGATC-A
1 GCATTGACTAATAATTGATCGA
* *
10094059 GCATTGA-TCAATCATTGGTCGA
1 GCATTGACT-AATAATTGATCGA
10094081 GCATT
1 GCATT
10094086 AGTTCATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 16 0.70
22 6 0.26
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (22 bp):
GCATTGACTAATAATTGATCGA
Found at i:10094483 original size:2 final size:2
Alignment explanation
Indices: 10094476--10094500 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10094466 GGAATCAATA
10094476 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10094501 ATTTTTACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10095720 original size:18 final size:19
Alignment explanation
Indices: 10095693--10095731 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
10095683 TATGAAATCA
*
10095693 AAATTTATA-TTACCGTAT
1 AAATTGATAGTTACCGTAT
10095711 AAATTGATATGTTACCGTAT
1 AAATTGATA-GTTACCGTAT
10095731 A
1 A
10095732 TATCTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
20 10 0.56
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (19 bp):
AAATTGATAGTTACCGTAT
Found at i:10098614 original size:16 final size:17
Alignment explanation
Indices: 10098580--10098612 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10098570 AGAGGGACTT
*
10098580 TTTTTTTTAAGGTAAAA
1 TTTTTTTTAAGATAAAA
10098597 TTTTTTTTAAGATAAA
1 TTTTTTTTAAGATAAA
10098613 TTATAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (17 bp):
TTTTTTTTAAGATAAAA
Found at i:10099061 original size:37 final size:36
Alignment explanation
Indices: 10099007--10099079 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 36
10098997 ATTTAATTAA
10099007 AATTCTTTTAATCAAATTTAAATAACTAGAAAATAT
1 AATTCTTTTAATCAAATTTAAATAACTAGAAAATAT
*
10099043 AATTTTTTTAAATCAAATTTAAATAACTAGAAAATAT
1 AATTCTTTT-AATCAAATTTAAATAACTAGAAAATAT
10099080 TGATTGTTGG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 8 0.23
37 27 0.77
ACGTcount: A:0.51, C:0.07, G:0.03, T:0.40
Consensus pattern (36 bp):
AATTCTTTTAATCAAATTTAAATAACTAGAAAATAT
Found at i:10101723 original size:36 final size:36
Alignment explanation
Indices: 10101678--10101754 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
10101668 AGTCATTGAT
*
10101678 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
10101714 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
10101750 TGATT
1 CGATT
10101755 GTGTAGCTCC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 36 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:10102384 original size:36 final size:36
Alignment explanation
Indices: 10102339--10102415 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
10102329 AGTCATTGAT
*
10102339 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
10102375 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
10102411 TGATT
1 CGATT
10102416 GTGTAGCTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 36 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:10102746 original size:660 final size:660
Alignment explanation
Indices: 10101469--10105444 Score: 7064
Period size: 660 Copynumber: 6.0 Consensus size: 660
10101459 TAGCTGTTTA
*
10101469 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGTTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
* *
10101534 TGTTTTTGATGTGCATGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGATTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
*
10101599 AGTTATCTGACAGTTGATTGATTGGAGAGACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
10101664 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
*
10101729 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCCGAGCGCATGTTATTAAGTAACGGATTGAG
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGC-TGTTATTAAGTAACGGATTGAG
10101794 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
325 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
* *
10101859 GTGGTAGTAATTGACGGATTAAGTAGTTATGAGCATGTGACCATGCTTGAGCTACTATCCTTGGA
390 GTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
* * *
10101924 CTATCAGTAGTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATGACTGTTTACC
455 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
*
10101989 GATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTCTCTTTCTCATTTTGTTCT
520 GATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
10102054 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTG
585 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTG
10102119 TTAGTAATTAT
650 TTAGTAATTAT
10102130 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
* *
10102195 TGTTTTTGATGTGCACGTGTTTCTTTCTTATTTTGTTCTTTCCAATATGCACCGCTCAAAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
10102260 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
10102325 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
10102390 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
*
10102455 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCATGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
* *
10102520 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACCATCTTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
*
10102585 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAACGTTAAAGCATAATAACTGTTTACTG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
* *
10102650 ATCCGGAAAGTTCGGGATGCATGCTTTTGGTTGTCGTGCATTTGTTTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
10102715 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
10102780 TAGTAATTAT
651 TAGTAATTAT
*
10102790 TGGAACTGGTTAAACGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
10102855 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
10102920 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
10102985 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
* * *
10103050 GAACATGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGTGCTGTTATTAAGTAATGGATTGAGT
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
* *
10103115 AGTTCCAAGCGCCTTTTAGAAATTAATGGTTAAGTACAGAGCACGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
* * *
10103180 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCAAGTGACAACGCTTGAGCTACTATCCTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
*
10103245 TATCACTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
10103310 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
10103375 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
10103440 TAGTAATTAT
651 TAGTAATTAT
* * *
10103450 TGGAACTGGTTAAATGTTAAAGCATTATAAATGTTTACAGATCCTGAAAGCTCGGGATGAATAAT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
* *
10103515 TGTTTTTCATGTGCACGTGTTTTTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
*
10103580 AGTTATCTGACTGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
* *
10103645 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAAACGATTAAGTAGGTAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
* *
10103710 GAACACGTGCTTGTAGTCAACTGATTATGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
10103775 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
* *
10103840 TGGTAGTAATTGACGGATTAAGTAGTTATGAGCATGTGACCATGCTTGAGCTACTATCCTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
* * *
10103905 TATCAGTAGTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATGACTGTTTACCG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
*
10103970 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTCTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
10104035 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
10104100 TAGTAATTAT
651 TAGTAATTAT
10104110 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
10104175 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
*
10104240 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAACTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
10104305 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
* * * *
10104370 GAGCATGTGCTTGTAATCAACTGATTGTGCAGCTCTGAGCGTTGTTATTAAGTAACGGATTGAGT
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
* * *
10104435 AGTTCCAAGTGCCTTTTAGAAATTAACTGTTAAGTACTGAGCATGTGTTAGCAATTAACATCACG
326 AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
*
10104500 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCACGCTTGAGCTACTATCCTTGGAC
391 TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
*
10104565 TATCAGTACTTGTTATAGTTTCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
456 TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
10104630 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
521 ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
*
10104695 TCCATATGCACTGCTCAGATAAACTTTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
586 TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
10104760 TAGTAATTAT
651 TAGTAATTAT
*
10104770 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGACAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
10104835 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTTCTTTCCAATTTGCACCGCTCAGAGTAC
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTG-TTCTTTCCAATATGCACCGCTCAGAGTAC
*
10104900 TAGTTATCTGACTGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCT
130 TAGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCT
* * *
10104965 TTGTTAGTCATTGATCGATTAAGTAGATATGACCACATGTTGGTAATCAAACGATTAAGTAGGTA
195 TTGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATA
* *
10105030 TGAACACGTGCTTGTAGTCAACTGATTATGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAG
260 TGAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAG
* * * *
10105095 TAGTTCCAAGCACCTTTTAGAAATTAATGGTCAAGTACTGATCACGTGTTAGCAATTAACAGTTT
325 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGC-----A-A--TT
*
10105160 GAGTAGTTCAGATCACGTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACATGACCATGCTTG
382 -A--A---C--ATCACGTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTG
* *
10105225 AGCTACTATCCTTGAACTATCAGTACTTG-T-TAGTTGCTCATGGAACTGGTTAAATGTTAGAGC
439 AGCTACTATCCTTGGACTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGC
* * *
10105288 ATAATAACTGTTTACTGATCCAGAAAGTTCGGGATGCATACTCTTGTTTGTCGTGCATGTGTTTC
504 ATAATAACTGTTTACTGATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTC
*
10105353 TTTCTCATTTTGTTCTTTCCATATGCACCGCTCAGATAAACTGTACTAGTTCACTGAC----GAT
569 TTTCTCATTTTGTTCTTTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGAT
*
10105414 TGATTGGTGAAACGTGTTAGTAATTAT
634 TGATTGGTGAAACTTGTTAGTAATTAT
10105441 TGGA
1 TGGA
10105445 GGGTAGTTTT
Statistics
Matches: 3178, Mismatches: 120, Indels: 24
0.96 0.04 0.01
Matches are distributed among these distances:
660 2355 0.74
661 553 0.17
666 1 0.00
667 1 0.00
669 2 0.00
670 1 0.00
671 33 0.01
672 1 0.00
675 150 0.05
676 1 0.00
677 80 0.03
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (660 bp):
TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCTGTTATTAAGTAACGGATTGAGT
AGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCACG
TGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGAC
TATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTG
ATCCGGAAAGTTCGGGATGCATGCTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTT
TCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGT
TAGTAATTAT
Found at i:10103044 original size:36 final size:36
Alignment explanation
Indices: 10102999--10103075 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
10102989 AGTCATTGAT
*
10102999 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
*
10103035 CGATTAAGTAGATATGAACATGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
10103071 TGATT
1 CGATT
10103076 GTGTAGCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:10104364 original size:36 final size:36
Alignment explanation
Indices: 10104319--10104395 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
10104309 AGTCATTGAT
10104319 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGACCACGTGCTT-GTAATCAAC
* *
10104355 CGATTAAGTAGATATGAGCATGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGACCACGTGCTTGTAATCAAC
*
10104391 TGATT
1 CGATT
10104396 GTGCAGCTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGACCACGTGCTTGTAATCAAC
Found at i:10104924 original size:180 final size:174
Alignment explanation
Indices: 10104590--10104949 Score: 426
Period size: 180 Copynumber: 2.0 Consensus size: 174
10104580 TAGTTTCTCA
* * * * *
10104590 TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACTGATCCGGAAAGTTCGGGATGCATGCT
1 TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
* *
10104655 TTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCTTTCCATATGCACTGCTCAGATAAACT
66 TTTGTTTGTCGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCATATGCACCGCTCAGAT-AACT
* *
10104720 TTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTGTTAGTAATTAT
130 TTACTAG-T-AC--AC-GTTGATTGATTGGAGAAACGTGTTAGTAATTAT
* * *
10104770 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGACAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
10104835 TGTT-TTTGAT-GTGCACGTGTTTCTTTCTCATTTTGTTTCTTTCCAATTTGCACCGCTCAGAGT
66 T-TTGTTTG-TCGTGCACGTGTTTCTTTCTCATTTTG-TTCTTTCC-ATATGCACCGCTCAGA-T
*
10104898 -ACTAGTTATCT-G-AC-TGTTGATTGATTGGAGAAACGTGTTAGTAATTAT
126 AACT--TTA-CTAGTACACGTTGATTGATTGGAGAAACGTGTTAGTAATTAT
10104946 TGGA
1 TGGA
10104950 TAGTAGTTAT
Statistics
Matches: 158, Mismatches: 14, Indels: 20
0.82 0.07 0.10
Matches are distributed among these distances:
176 35 0.22
180 88 0.56
181 14 0.09
182 14 0.09
183 5 0.03
184 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (174 bp):
TGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
TTTGTTTGTCGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCATATGCACCGCTCAGATAACTT
TACTAGTACACGTTGATTGATTGGAGAAACGTGTTAGTAATTAT
Found at i:10109511 original size:42 final size:42
Alignment explanation
Indices: 10109410--10109608 Score: 256
Period size: 42 Copynumber: 4.7 Consensus size: 42
10109400 CGTGTTTTAC
* * * * * * *
10109410 TTTCTATTTAGCTCTTATGAGCTTTTGTTTAACTCATACGAA
1 TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
* * * *
10109452 TTTTTGTTCAACACTTACGAGCTTCTGTTCAACTCTTATGAG
1 TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
*
10109494 TTTCTGTTTAGCTCTTACGAGCTTCTATTCAACTCTTATGAG
1 TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
10109536 TTTCTG-TTAGGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
1 TTTCTGTTTA-GCTCTTACGAGCTTCTGTTCAACTCTTATGAG
* *
10109578 TTTCTGTTTAGCTCTTATGAGTTTCTGTTCA
1 TTTCTGTTTAGCTCTTACGAGCTTCTGTTCA
10109609 GCTTTCGAGT
Statistics
Matches: 136, Mismatches: 19, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
41 3 0.02
42 130 0.96
43 3 0.02
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (42 bp):
TTTCTGTTTAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
Found at i:10109572 original size:63 final size:63
Alignment explanation
Indices: 10109410--10109611 Score: 217
Period size: 63 Copynumber: 3.2 Consensus size: 63
10109400 CGTGTTTTAC
* * * * * * * *
10109410 TTTCTATTTAGCTCTTATGAGCTTTTGTTTAACTCATACGAATTTTTGTTCAACACTTACGAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACTCTTACGAGTTTCTGTTCAACTCTTATGAG
* * * * * *
10109473 CTTCTGTTCAACTCTTATGAGTTTCTGTTTAGCTCTTACGAGCTTCTATTCAACTCTTATGAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACTCTTACGAGTTTCTGTTCAACTCTTATGAG
* * * * *
10109536 TTTCTGTT-AGGCTCTTACGAGCTTCTGTTCAACTCTTATGAGTTTCTGTTTAGCTCTTATGAG
1 TTTCTGTTCA-GCTCTTATGAGCTTCTGTTTAACTCTTACGAGTTTCTGTTCAACTCTTATGAG
10109599 TTTCTGTTCAGCT
1 TTTCTGTTCAGCT
10109612 TTCGAGTCGA
Statistics
Matches: 112, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
62 1 0.01
63 110 0.98
64 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (63 bp):
TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACTCTTACGAGTTTCTGTTCAACTCTTATGAG
Done.