Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 380 of 425
Found at i:116887650 original size:19 final size:19
Alignment explanation
Indices: 116887626--116887664 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
116887616 CAAAGAGTTA
116887626 GAAACCCGAATCTGTGCCG
1 GAAACCCGAATCTGTGCCG
116887645 GAAACCCGAATCTGTGCCG
1 GAAACCCGAATCTGTGCCG
116887664 G
1 G
116887665 TGGTTTGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.31, G:0.28, T:0.15
Consensus pattern (19 bp):
GAAACCCGAATCTGTGCCG
Found at i:116889955 original size:39 final size:40
Alignment explanation
Indices: 116889854--116890056 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
116889844 TCGAATGATG
* *
116889854 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
116889894 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
116889933 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
116889973 TCCGGGCT-AGTCCCGAAGGCATTTGTGTGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
116890012 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
116890052 TCCGG
1 TCCGG
116890057 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 65 0.47
40 64 0.46
41 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:116890051 original size:40 final size:38
Alignment explanation
Indices: 116889855--116890056 Score: 171
Period size: 40 Copynumber: 5.1 Consensus size: 38
116889845 CGAATGATGT
* *
116889855 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCT-AGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* *
116889895 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCT-AG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
116889935 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTA-AA
1 CCGGGCT-AGTCCCGAAGGCATTTGTGCGAGT-ACTATAA
*
116889973 TCCGGGCTAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 -CCGGGCTAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
** *
116890013 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGCTA-GTCCCGAAGGCATTTGTGCGAGTA-CTATAA
116890053 CCGG
1 CCGG
116890057 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 11, Indels: 24
0.80 0.06 0.14
Matches are distributed among these distances:
38 3 0.02
39 63 0.45
40 64 0.46
41 9 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGCTAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:116894702 original size:21 final size:21
Alignment explanation
Indices: 116894676--116894718 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
116894666 ACCCGACAAC
116894676 GTGTTAGTAGCTGAATTAAAG
1 GTGTTAGTAGCTGAATTAAAG
116894697 GTGTTAGTAGCTGAATTAAAG
1 GTGTTAGTAGCTGAATTAAAG
116894718 G
1 G
116894719 CCAAGCCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.33
Consensus pattern (21 bp):
GTGTTAGTAGCTGAATTAAAG
Found at i:116898102 original size:39 final size:40
Alignment explanation
Indices: 116898001--116898243 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
116897991 TCGAATGATG
* *
116898001 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
116898041 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * * *
116898080 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCATTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
116898120 TCCGGGTTAAGTTCCGAA-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
116898159 ACCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
116898199 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
116898239 TCCGG
1 TCCGG
116898244 TTAAATTCCG
Statistics
Matches: 175, Mismatches: 20, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
39 66 0.38
40 101 0.58
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:116898136 original size:79 final size:80
Alignment explanation
Indices: 116898001--116898243 Score: 273
Period size: 79 Copynumber: 3.1 Consensus size: 80
116897991 TCGAATGATG
* * * * *
116898001 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAATCCGGGCTAAGTTCCGAAGGCATT
116898065 TGTGCGAGTTACTA-A
65 TGTGCGAGTTACTATA
* * *
116898080 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCATTAAATCCGGGTTAAGTTCCGAA-GCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAATCCGGGCTAAGTTCCGAAGGCATT
116898143 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
* * * * *
116898159 ACCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AATCCGGGCTAAGTTCCGAAGGCATT
**
116898223 TGAACGAG-TAGCTATA
65 TGTGCGAGTTA-CTATA
116898239 TCCGG
1 TCCGG
116898244 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
78 28 0.20
79 71 0.51
80 39 0.28
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAATCCGGGCTAAGTTCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:116903368 original size:46 final size:46
Alignment explanation
Indices: 116903217--116903382 Score: 175
Period size: 46 Copynumber: 3.6 Consensus size: 46
116903207 CCGATAAGCG
*
116903217 AACTCGGACTCAACTCAA-GAGCTC-GAGCGTTCGCATCCATAAGT
1 AACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACATCCATAAGT
* *
116903261 GAACTCGGACTCAAGTCAATGAGCTCGGATGCCTAGTT-ACATCTCAT--G-
1 -AACTCGGACTCAACTCAACGAGCTCGGA-G-C--GTTCACATC-CATAAGT
*
116903309 AACTCGGACTCAACTCAACGAGTTCGGA-CGTTCACATCCATAAGT
1 AACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACATCCATAAGT
*
116903354 AAACTCGGACTCAACTCAACGAGTTCGGA
1 -AACTCGGACTCAACTCAACGAGCTCGGA
116903383 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 5, Indels: 23
0.79 0.04 0.17
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
44 2 0.02
45 17 0.16
46 34 0.33
47 27 0.26
48 1 0.01
49 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACATCCATAAGT
Found at i:116903382 original size:93 final size:92
Alignment explanation
Indices: 116903216--116903386 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 92
116903206 GCCGATAAGC
* * * *
116903216 GAACTCGGACTCAACTCAAGAGCTCGAGCGTTCGCATCCATAAGTGAACTCGGACTCAAGTCAAT
1 GAACTCGGACTCAACTCAAGAGCTCGAGCGTTCACATCCATAAGTAAACTCGGACTCAACTCAAC
116903281 GAGCTCGGATGCCTAGTTACATCTCAT
66 GAGCTCGGATGCCTAGTTACATCTCAT
*
116903308 GAACTCGGACTCAACTCAACGAGTTCG-GACGTTCACATCCATAAGTAAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAA-GAGCTCGAG-CGTTCACATCCATAAGTAAACTCGGACTCAACTCA
*
116903372 ACGAGTTCGGATGCC
64 ACGAGCTCGGATGCC
116903387 CAAATATCTG
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
92 20 0.28
93 51 0.72
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAAGAGCTCGAGCGTTCACATCCATAAGTAAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCAT
Found at i:116904938 original size:36 final size:36
Alignment explanation
Indices: 116904891--116904963 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
116904881 CAATTTGGTT
116904891 AATGGAGACTAGAATTCCAAGAAATCCAACAATCAA
1 AATGGAGACTAGAATTCCAAGAAATCCAACAATCAA
*
116904927 AATGGAGACTAGAATTCCAAGAAATCCAATAATCAA
1 AATGGAGACTAGAATTCCAAGAAATCCAACAATCAA
116904963 A
1 A
116904964 GGGACCTGCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.51, C:0.18, G:0.14, T:0.18
Consensus pattern (36 bp):
AATGGAGACTAGAATTCCAAGAAATCCAACAATCAA
Found at i:116909186 original size:46 final size:46
Alignment explanation
Indices: 116909119--116909240 Score: 183
Period size: 46 Copynumber: 2.7 Consensus size: 46
116909109 TGCAACCCGC
**
116909119 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGTTCGCAT
*
116909165 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
116909211 CCATAAGTGAACTTGAACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
116909241 TTTCAAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 2 0.03
46 68 0.97
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:116912092 original size:35 final size:35
Alignment explanation
Indices: 116912018--116912106 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
116912008 TCTAATATTT
* *
116912018 TGATTCGCATGTTAAGTATGTCATATTTCCGATTA
1 TGATTCACATGTTAAGCATGTCATATTTCCGATTA
* *** *
116912053 TGATTCATATGTTAAGCATGTCATATTTTTTATTC
1 TGATTCACATGTTAAGCATGTCATATTTCCGATTA
*
116912088 TGATTCGCATGTTAAGCAT
1 TGATTCACATGTTAAGCAT
116912107 ACCTACTGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 45 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (35 bp):
TGATTCACATGTTAAGCATGTCATATTTCCGATTA
Found at i:116926067 original size:12 final size:12
Alignment explanation
Indices: 116926052--116926076 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
116926042 AGAATTAAGA
116926052 ACAAAAACAAGT
1 ACAAAAACAAGT
116926064 ACAAAAACAAGT
1 ACAAAAACAAGT
116926076 A
1 A
116926077 TTTATCGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.08, T:0.08
Consensus pattern (12 bp):
ACAAAAACAAGT
Found at i:116926468 original size:30 final size:30
Alignment explanation
Indices: 116926432--116926489 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
116926422 CACGGGCTGG
*
116926432 CACATGGGCATGTGGCCTACCCCTGTGGAT
1 CACATGGACATGTGGCCTACCCCTGTGGAT
* * *
116926462 CACATGGACGTGTGGCCTGCCCGTGTGG
1 CACATGGACATGTGGCCTACCCCTGTGG
116926490 GTCCTGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.14, C:0.29, G:0.34, T:0.22
Consensus pattern (30 bp):
CACATGGACATGTGGCCTACCCCTGTGGAT
Found at i:116928421 original size:3 final size:3
Alignment explanation
Indices: 116928298--116928410 Score: 126
Period size: 3 Copynumber: 37.7 Consensus size: 3
116928288 TTTGAAGAGA
* * *
116928298 AAT AAT AAT AAT AAT AAT AAT AA- AAC AACT AA- AAC AA- AATT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AA-T AAT
*
116928342 AAG AA- AGAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT A-AT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
116928388 AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
116928411 ACTCAATAAT
Statistics
Matches: 99, Mismatches: 3, Indels: 16
0.84 0.03 0.14
Matches are distributed among these distances:
2 7 0.07
3 85 0.86
4 6 0.06
5 1 0.01
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:116928427 original size:18 final size:18
Alignment explanation
Indices: 116928352--116928431 Score: 81
Period size: 15 Copynumber: 4.9 Consensus size: 18
116928342 AAGAAAGATA
116928352 AATAATAATAAT-AA-T-
1 AATAATAATAATAAACTC
116928367 AATAATAATAAT-AA-T-
1 AATAATAATAATAAACTC
116928382 AATAATAATAAT-AA-T-
1 AATAATAATAATAAACTC
116928397 AATAATAATAATAAACTC
1 AATAATAATAATAAACTC
116928415 AATAAT-ATCAATAAACT
1 AATAATAAT-AATAAACT
116928432 TAAAAGGTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
15 42 0.69
16 2 0.03
17 3 0.05
18 14 0.23
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (18 bp):
AATAATAATAATAAACTC
Found at i:116928500 original size:28 final size:29
Alignment explanation
Indices: 116928458--116928524 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
116928448 TAATAATAGT
* *
116928458 AAAAATAAAAAAAATACGAAAGA-AAAAAG
1 AAAAATAATAGAAATACGAAA-ATAAAAAG
* *
116928487 AAAAA-AATAGAAATAGGAAAATAAAAAT
1 AAAAATAATAGAAATACGAAAATAAAAAG
116928515 AAAAATAATA
1 AAAAATAATA
116928525 AAAGTATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 1 0.03
28 22 0.69
29 9 0.28
ACGTcount: A:0.78, C:0.01, G:0.09, T:0.12
Consensus pattern (29 bp):
AAAAATAATAGAAATACGAAAATAAAAAG
Found at i:116928512 original size:22 final size:22
Alignment explanation
Indices: 116928458--116928513 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
116928448 TAATAATAGT
116928458 AAAAATAAAAAAAATACGAAAGA
1 AAAAAT-AAAAAAATACGAAAGA
* *
116928481 AAAAAGAAAAAAATA-GAAATA
1 AAAAATAAAAAAATACGAAAGA
*
116928502 GGAAAATAAAAA
1 -AAAAATAAAAA
116928514 TAAAAATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 5 0.18
22 18 0.64
23 5 0.18
ACGTcount: A:0.79, C:0.02, G:0.11, T:0.09
Consensus pattern (22 bp):
AAAAATAAAAAAATACGAAAGA
Found at i:116928527 original size:20 final size:20
Alignment explanation
Indices: 116928489--116928632 Score: 53
Period size: 20 Copynumber: 7.0 Consensus size: 20
116928479 GAAAAAAGAA
* **
116928489 AAAAATAGAAATAGGAAAAT
1 AAAAATAAAAATAATAAAAT
116928509 AAAAATAAAAATAATAAAAGT
1 AAAAATAAAAATAATAAAA-T
* * *
116928530 ATATA-AAAAATTA-AAAAT
1 AAAAATAAAAATAATAAAAT
* * * *
116928548 ATAAGTACAAGAATACTAAATT
1 AAAAATA-AA-AATAATAAAAT
* * * *
116928570 AATTAAT-TAATTATTAAAAT
1 AA-AAATAAAAATAATAAAAT
116928590 AAAAATAAATAAT-ATAACAATT
1 AAAAATAAA-AATAATAA-AA-T
*
116928612 AAAAATAAAATAAAATAAAAT
1 AAAAATAAAA-ATAATAAAAT
116928633 TAAGGTGATT
Statistics
Matches: 89, Mismatches: 23, Indels: 23
0.66 0.17 0.17
Matches are distributed among these distances:
18 4 0.04
19 8 0.09
20 39 0.44
21 14 0.16
22 18 0.20
23 6 0.07
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (20 bp):
AAAAATAAAAATAATAAAAT
Found at i:116928544 original size:18 final size:19
Alignment explanation
Indices: 116928513--116928550 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
116928503 GAAAATAAAA
*
116928513 ATAAAAATAATAAAAGTAT
1 ATAAAAATAATAAAAATAT
*
116928532 ATAAAAA-ATTAAAAATAT
1 ATAAAAATAATAAAAATAT
116928550 A
1 A
116928551 AGTACAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (19 bp):
ATAAAAATAATAAAAATAT
Found at i:116928602 original size:22 final size:22
Alignment explanation
Indices: 116928589--116928635 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
116928579 ATTATTAAAA
116928589 TAAAAATAAATAATATAACAAT
1 TAAAAATAAATAATATAACAAT
*
116928611 TAAAAATAAAATAAAATAA-AAT
1 TAAAAAT-AAATAATATAACAAT
116928633 TAA
1 TAA
116928636 GGTGATTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (22 bp):
TAAAAATAAATAATATAACAAT
Found at i:116935897 original size:26 final size:26
Alignment explanation
Indices: 116935868--116935975 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
116935858 TGGTACAAAT
116935868 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
116935894 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
116935920 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
116935946 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
116935972 TGAT
1 TGAT
116935976 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:116937495 original size:26 final size:26
Alignment explanation
Indices: 116937466--116937518 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
116937456 TTTACAGTTT
116937466 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
116937492 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
116937518 T
1 T
116937519 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:116945971 original size:18 final size:18
Alignment explanation
Indices: 116945944--116945978 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
116945934 GGAATCAATC
*
116945944 CCTAAAAATTAGTAATTT
1 CCTAAAAATTAGAAATTT
*
116945962 CCTAAGAATTAGAAATT
1 CCTAAAAATTAGAAATT
116945979 AATATTAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAAAAATTAGAAATTT
Found at i:116949855 original size:57 final size:57
Alignment explanation
Indices: 116949787--116949899 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 57
116949777 TTTACGTCCT
* * *
116949787 GTATCACGTGGCCCGGCTCAAGGAGTTTCGGAGAAAACGAGC-GGGATTTGGGCCGGC
1 GTATCACGTGGCCCGGCTCAAGGAGTATCAGAGAAAACGAGCAGGG-TTAGGGCCGGC
116949844 GTATCACGTGGCCCGGCTCAAGGAGTATCAGAGAAAACGAGCAGGGTTAGGGCCGG
1 GTATCACGTGGCCCGGCTCAAGGAGTATCAGAGAAAACGAGCAGGGTTAGGGCCGG
116949900 TGTCCCTAGG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
57 49 0.94
58 3 0.06
ACGTcount: A:0.24, C:0.22, G:0.38, T:0.16
Consensus pattern (57 bp):
GTATCACGTGGCCCGGCTCAAGGAGTATCAGAGAAAACGAGCAGGGTTAGGGCCGGC
Found at i:116960112 original size:26 final size:26
Alignment explanation
Indices: 116960077--116960212 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
116960067 AATGATATTC
*
116960077 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
116960103 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
116960129 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
116960155 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
116960181 TTATTATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
116960207 TTATCA
1 TTATCA
116960213 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 101 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:116960158 original size:52 final size:52
Alignment explanation
Indices: 116960077--116960212 Score: 245
Period size: 52 Copynumber: 2.6 Consensus size: 52
116960067 AATGATATTC
* *
116960077 TTATTATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATTATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
*
116960129 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
1 TTATTATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
116960181 TTATTATGGAACATTTACCTAACCTATTATCA
1 TTATTATGGAACATTTACCTAACCTATTATCA
116960213 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 80 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (52 bp):
TTATTATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:116960799 original size:21 final size:21
Alignment explanation
Indices: 116960759--116960809 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
116960749 ATTTATAACA
* *
116960759 TATTCAATTCTCATCTCTTGC
1 TATTCAAATCTCATCACTTGC
116960780 TATTTCAAATCTCAT-ACTTGC
1 TA-TTCAAATCTCATCACTTGC
116960801 TATTCAAAT
1 TATTCAAAT
116960810 AACTTTTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 7 0.26
21 9 0.33
22 11 0.41
ACGTcount: A:0.27, C:0.24, G:0.04, T:0.45
Consensus pattern (21 bp):
TATTCAAATCTCATCACTTGC
Found at i:116961060 original size:41 final size:38
Alignment explanation
Indices: 116960939--116961061 Score: 124
Period size: 37 Copynumber: 3.1 Consensus size: 38
116960929 TATCCAGTAC
*
116960939 CTCATCGGA-TAATTTGAAGTAAAAATTTGACACCCAGTGT
1 CTCATC-GATTAATCTGAAGT-AAAA-TTGACACCCAGTGT
* * * * *
116960979 CTCATTGGTTAAACTGAAGT-AAATTGGCACCGAGTGT
1 CTCATCGATTAATCTGAAGTAAAATTGACACCCAGTGT
116961016 CTCATCGAATTAATCTGAAGTAATATATTGACACCCAGTGT
1 CTCATCG-ATTAATCTGAAGTAA-A-ATTGACACCCAGTGT
116961057 CTCAT
1 CTCAT
116961062 TGACTCGAAG
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
37 18 0.27
38 14 0.21
39 2 0.03
40 15 0.22
41 18 0.27
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (38 bp):
CTCATCGATTAATCTGAAGTAAAATTGACACCCAGTGT
Found at i:116961950 original size:4 final size:4
Alignment explanation
Indices: 116961941--116961981 Score: 64
Period size: 4 Copynumber: 9.8 Consensus size: 4
116961931 TAGTTTCTCT
116961941 TTTC TTTC TTTC TTTC TTTC TTTTC TTTC TTTCC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC -TTTC TTTC TTT-C TTTC TTT
116961982 TCTTCCTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 27 0.77
5 8 0.23
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:116961950 original size:9 final size:9
Alignment explanation
Indices: 116961941--116961985 Score: 67
Period size: 9 Copynumber: 5.2 Consensus size: 9
116961931 TAGTTTCTCT
116961941 TTTC-TTTC
1 TTTCTTTTC
116961949 TTTC-TTTC
1 TTTCTTTTC
116961957 TTTCTTTTC
1 TTTCTTTTC
*
116961966 TTTCTTTCC
1 TTTCTTTTC
116961975 TTTCTTTTC
1 TTTCTTTTC
116961984 TT
1 TT
116961986 CCTGTTTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
8 12 0.35
9 22 0.65
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:116961965 original size:13 final size:12
Alignment explanation
Indices: 116961941--116961981 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 12
116961931 TAGTTTCTCT
116961941 TTTCTTTCTTTC
1 TTTCTTTCTTTC
116961953 TTTCTTTCTTTTC
1 TTTCTTTC-TTTC
116961966 TTTCTTTCCTTTC
1 TTTCTTT-CTTTC
116961979 TTT
1 TTT
116961982 TCTTCCTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.30
13 18 0.67
14 1 0.04
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTCTTTCTTTC
Found at i:116961987 original size:13 final size:13
Alignment explanation
Indices: 116961938--116961988 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 13
116961928 CTCTAGTTTC
*
116961938 TCTTTTCTTTCTT
1 TCTTTTCTTCCTT
*
116961951 TC-TTTCTTTCTT
1 TCTTTTCTTCCTT
116961963 T-TCTTTCTTTCCTT
1 TCT-TTTC-TTCCTT
116961977 TCTTTTCTTCCT
1 TCTTTTCTTCCT
116961989 GTTTTGTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
12 11 0.33
13 11 0.33
14 10 0.30
15 1 0.03
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
TCTTTTCTTCCTT
Found at i:116962763 original size:15 final size:15
Alignment explanation
Indices: 116962716--116962764 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
116962706 TTTGATAAAC
*
116962716 TGAAAAATTAAGTGC
1 TGAAAAATTAAGTGT
* *
116962731 TAAAAAAATAAGTGT
1 TGAAAAATTAAGTGT
*
116962746 TGAAAAATTAAGTAT
1 TGAAAAATTAAGTGT
116962761 TGAA
1 TGAA
116962765 TTTAAATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.53, C:0.02, G:0.16, T:0.29
Consensus pattern (15 bp):
TGAAAAATTAAGTGT
Found at i:116965022 original size:44 final size:44
Alignment explanation
Indices: 116964974--116965069 Score: 183
Period size: 44 Copynumber: 2.2 Consensus size: 44
116964964 GATATCGATT
116964974 TAGCTTCGGTTAATTGAGATGGCACTATGTGTACGGAATTGTTC
1 TAGCTTCGGTTAATTGAGATGGCACTATGTGTACGGAATTGTTC
*
116965018 TAGCTTCGGTTAATTGAGATGGCACTATGTGTATGGAATTGTTC
1 TAGCTTCGGTTAATTGAGATGGCACTATGTGTACGGAATTGTTC
116965062 TAGCTTCG
1 TAGCTTCG
116965070 ACTAACCTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.38
Consensus pattern (44 bp):
TAGCTTCGGTTAATTGAGATGGCACTATGTGTACGGAATTGTTC
Found at i:116972950 original size:33 final size:32
Alignment explanation
Indices: 116972883--116972968 Score: 77
Period size: 33 Copynumber: 2.6 Consensus size: 32
116972873 AGAAAATATT
* **
116972883 TTTTATAAAATTCTAAAATATATAATTATAAA
1 TTTTATAAAATTCAAAAATATATAAAAATAAA
*
116972915 TTTTA-AAAATTCAAAATAATATATAAAAATTAATT
1 TTTTATAAAATTC-AAA-AATATATAAAAA-TAA-A
116972950 TTTTATGAAAATT-AAAAAT
1 TTTTAT-AAAATTCAAAAAT
116972969 GTATTTAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
31 7 0.16
32 7 0.16
33 10 0.23
34 6 0.14
35 8 0.18
37 6 0.14
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (32 bp):
TTTTATAAAATTCAAAAATATATAAAAATAAA
Found at i:116973203 original size:19 final size:19
Alignment explanation
Indices: 116973175--116973221 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
116973165 TTTTATAATT
* *
116973175 TATATTTTTTTCTAGATT-A
1 TATATATTTTCCTA-ATTGA
*
116973194 TATATATTTTCCTAATTGT
1 TATATATTTTCCTAATTGA
116973213 TATATATTT
1 TATATATTT
116973222 ATTTTTGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 3 0.12
19 21 0.88
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (19 bp):
TATATATTTTCCTAATTGA
Found at i:116974245 original size:3 final size:3
Alignment explanation
Indices: 116974237--116974269 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
116974227 TAATTAGTAT
116974237 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
116974270 AAAAGCTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:116974411 original size:3 final size:3
Alignment explanation
Indices: 116974403--116974440 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
116974393 CGTTTCATCA
116974403 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
116974441 CATTTTTAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:116975970 original size:45 final size:45
Alignment explanation
Indices: 116975919--116976004 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
116975909 TTCATCATCT
*
116975919 GAAATTGTGAACACGTCAATGGGATTCGGATTTGGGGTACCTTCA
1 GAAATTGTGAACACGTCAATGGGATTCGGATTTAGGGTACCTTCA
* *
116975964 GAAATTGTGACCGCGTCAATGGGATTCGGATTTAGGGTACC
1 GAAATTGTGAACACGTCAATGGGATTCGGATTTAGGGTACC
116976005 CAAAGCTTCG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (45 bp):
GAAATTGTGAACACGTCAATGGGATTCGGATTTAGGGTACCTTCA
Found at i:116977945 original size:52 final size:52
Alignment explanation
Indices: 116977884--116978010 Score: 152
Period size: 51 Copynumber: 2.5 Consensus size: 52
116977874 ATGTTGGCCG
* *
116977884 AATGTGTAAATTTTGCAAGTTAAAATTTGATAAATCAATACCAACA-TGACAA
1 AATGTGTAAATTTTGAAAGTTAAAATTTGATAAATCAAGACCAA-ATTGACAA
* * * * *
116977936 AATGTGTAAATGTTGTAGGTT-AAATTTGTTAAATTAAGACCAAATTGACAA
1 AATGTGTAAATTTTGAAAGTTAAAATTTGATAAATCAAGACCAAATTGACAA
116977987 AATGTGTAAACTTTT-AAAGTTAAA
1 AATGTGTAAA-TTTTGAAAGTTAAA
116978011 TTGGTTATTA
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
50 1 0.02
51 39 0.62
52 23 0.37
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (52 bp):
AATGTGTAAATTTTGAAAGTTAAAATTTGATAAATCAAGACCAAATTGACAA
Found at i:116979600 original size:2 final size:2
Alignment explanation
Indices: 116979593--116979624 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
116979583 TGTTTGCAAA
116979593 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
116979625 TGATGCGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:116991924 original size:20 final size:20
Alignment explanation
Indices: 116991899--116991936 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
116991889 CTAATCTTAA
116991899 AATATGAAAGACAA-AACTCT
1 AATATGAAA-ACAATAACTCT
116991919 AATATGAAAACAATAACT
1 AATATGAAAACAATAACT
116991937 AGTTACAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.58, C:0.13, G:0.08, T:0.21
Consensus pattern (20 bp):
AATATGAAAACAATAACTCT
Found at i:117000246 original size:16 final size:14
Alignment explanation
Indices: 117000225--117000272 Score: 53
Period size: 13 Copynumber: 3.3 Consensus size: 14
117000215 CAAAAATTTA
117000225 AAATAAATCATAAAAT
1 AAATAAAT-A-AAAAT
117000241 AAATAAATAAAAAT
1 AAATAAATAAAAAT
*
117000255 -AATACATAAAATAT
1 AAATAAATAAAA-AT
117000269 AAAT
1 AAAT
117000273 TTTAACATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 10 0.34
14 7 0.24
15 4 0.14
16 8 0.28
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (14 bp):
AAATAAATAAAAAT
Found at i:117000252 original size:13 final size:13
Alignment explanation
Indices: 117000223--117000267 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
117000213 TGCAAAAATT
117000223 TAAAATAAAT-CA
1 TAAAATAAATACA
*
117000235 TAAAATAAATAAA
1 TAAAATAAATACA
117000248 TAAAA-ATAATACA
1 TAAAATA-AATACA
117000261 TAAAATA
1 TAAAATA
117000268 TAAATTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 11 0.39
13 16 0.57
14 1 0.04
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAAATAAATACA
Found at i:117000364 original size:5 final size:5
Alignment explanation
Indices: 117000354--117000400 Score: 60
Period size: 5 Copynumber: 9.4 Consensus size: 5
117000344 TTACAATTAA
* *
117000354 AATAT AATAT AATAT AAAAT AATA- ATATAT AATAA AATAT AATAT AA
1 AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT AATAT AA
117000401 AATAGTAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
4 1 0.03
5 34 0.94
6 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (5 bp):
AATAT
Found at i:117000769 original size:40 final size:38
Alignment explanation
Indices: 117000708--117000793 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 38
117000698 AAAGAAACAA
*
117000708 ATAATATACATAAATAGATTTAAAAGAAAATAT-ACAT
1 ATAATATACATAAATAAATTTAAAAGAAAATATCACAT
117000745 ATATATATACAAGTAAATAAATTTAAAAGAAAATATCCACAT
1 ATA-ATATAC-A-TAAATAAATTTAAAAGAAAATAT-CACAT
117000787 ATAATAT
1 ATAATAT
117000794 GAAATCAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
37 3 0.07
38 6 0.14
39 1 0.02
40 22 0.51
41 4 0.09
42 7 0.16
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.30
Consensus pattern (38 bp):
ATAATATACATAAATAAATTTAAAAGAAAATATCACAT
Found at i:117003519 original size:14 final size:15
Alignment explanation
Indices: 117003496--117003548 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 15
117003486 TGAGATCCAA
*
117003496 AAAATATATTTAT-T
1 AAAATTTATTTATAT
*
117003510 AAAATTTATTTCTAT
1 AAAATTTATTTATAT
* *
117003525 AATATATTAATTATAT
1 AAAAT-TTATTTATAT
117003541 AAAATTTA
1 AAAATTTA
117003549 AAAAATATGA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 11 0.35
15 8 0.26
16 12 0.39
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
AAAATTTATTTATAT
Found at i:117006276 original size:18 final size:19
Alignment explanation
Indices: 117006245--117006287 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
117006235 ATATGTTCAT
117006245 TAATTATTAGAAAA-AATA
1 TAATTATTAGAAAATAATA
** *
117006263 TAATTATTTTAAAATGATA
1 TAATTATTAGAAAATAATA
117006282 TAATTA
1 TAATTA
117006288 GAAGAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
TAATTATTAGAAAATAATA
Found at i:117007376 original size:28 final size:28
Alignment explanation
Indices: 117007345--117007429 Score: 68
Period size: 28 Copynumber: 3.0 Consensus size: 28
117007335 TCTATCACTT
117007345 GCTTAACTGACCATCCATTCCATTGCTC
1 GCTTAACTGACCATCCATTCCATTGCTC
** * * * *
117007373 GCTTAGTTGTCTGC-TCGC--TCCGTCGCTT
1 GCTTAACTGAC--CATC-CATTCCATTGCTC
117007401 GCTTAACTGACCATCCATTCCATTGCTC
1 GCTTAACTGACCATCCATTCCATTGCTC
117007429 G
1 G
117007430 TTCAGTTGTC
Statistics
Matches: 39, Mismatches: 12, Indels: 12
0.62 0.19 0.19
Matches are distributed among these distances:
26 2 0.05
27 2 0.05
28 31 0.79
29 2 0.05
30 2 0.05
ACGTcount: A:0.15, C:0.34, G:0.16, T:0.34
Consensus pattern (28 bp):
GCTTAACTGACCATCCATTCCATTGCTC
Found at i:117007402 original size:56 final size:56
Alignment explanation
Indices: 117007339--117007460 Score: 219
Period size: 56 Copynumber: 2.2 Consensus size: 56
117007329 ACCATCTCTA
117007339 TCACTTGCTTAACTGACCATCCATTCCATTGCTCGCTT-AGTTGTCTGCTCGCTCCG
1 TCACTTGCTTAACTGACCATCCATTCCATTGCTCG-TTCAGTTGTCTGCTCGCTCCG
*
117007395 TCGCTTGCTTAACTGACCATCCATTCCATTGCTCGTTCAGTTGTCTGCTCGCTCCG
1 TCACTTGCTTAACTGACCATCCATTCCATTGCTCGTTCAGTTGTCTGCTCGCTCCG
117007451 TCACTTGCTT
1 TCACTTGCTT
117007461 CGTGAACTGC
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
55 2 0.03
56 61 0.97
ACGTcount: A:0.13, C:0.34, G:0.16, T:0.37
Consensus pattern (56 bp):
TCACTTGCTTAACTGACCATCCATTCCATTGCTCGTTCAGTTGTCTGCTCGCTCCG
Found at i:117008499 original size:30 final size:30
Alignment explanation
Indices: 117008463--117008523 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
117008453 ATAGTATGGC
117008463 TTATCTCAAACCTAATTAAGTGATTGACTA
1 TTATCTCAAACCTAATTAAGTGATTGACTA
117008493 TTATCTCAAACCTAATTAAGTGATTGACTA
1 TTATCTCAAACCTAATTAAGTGATTGACTA
117008523 T
1 T
117008524 GTACGCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (30 bp):
TTATCTCAAACCTAATTAAGTGATTGACTA
Found at i:117014981 original size:32 final size:30
Alignment explanation
Indices: 117014907--117014988 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
117014897 GTATACAATT
* *
117014907 GTAACATAAATATTTAATTACTTTTTATTTAA
1 GTAA-ATAGATATTT-ATTACTTATTATTTAA
117014939 GTAAATAGATATTTATTACTTATTATTATTAA
1 GTAAATAGATATTTATTACTTATTA-T-TTAA
117014971 GTTAAA-AGATATTTATTA
1 G-TAAATAGATATTTATTA
117014989 ATTAAATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 10 0.22
31 10 0.22
32 21 0.47
33 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (30 bp):
GTAAATAGATATTTATTACTTATTATTTAA
Found at i:117015112 original size:3 final size:3
Alignment explanation
Indices: 117015100--117015165 Score: 107
Period size: 3 Copynumber: 22.3 Consensus size: 3
117015090 AAATATATAT
* *
117015100 TTA TTA -TA TTA TTG TTA TAA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
117015147 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
117015166 AAATAAATTA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
2 2 0.03
3 56 0.97
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:117023988 original size:33 final size:33
Alignment explanation
Indices: 117023945--117024014 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
117023935 ATTATAAACA
*
117023945 TAACAGATGAATAAATCTATAAACGAAGCTATC
1 TAACAAATGAATAAATCTATAAACGAAGCTATC
*
117023978 TAACAAATGAATAAATCTATAAACGAAGTTATC
1 TAACAAATGAATAAATCTATAAACGAAGCTATC
117024011 TAAC
1 TAAC
117024015 GAAACTTAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (33 bp):
TAACAAATGAATAAATCTATAAACGAAGCTATC
Found at i:117024858 original size:27 final size:27
Alignment explanation
Indices: 117024827--117024881 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
117024817 AGTTTCCATA
* *
117024827 TGGCATGGCAAGCATAAGCTTG-AATTG
1 TGGCATGACAAGCACAAGC-TGAAATTG
117024854 TGGCATGACAAGCACAAGCTGAAATTG
1 TGGCATGACAAGCACAAGCTGAAATTG
117024881 T
1 T
117024882 TTTCTTGTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (27 bp):
TGGCATGACAAGCACAAGCTGAAATTG
Found at i:117026318 original size:3 final size:3
Alignment explanation
Indices: 117026312--117026870 Score: 213
Period size: 3 Copynumber: 182.7 Consensus size: 3
117026302 TGAATTTCTA
*
117026312 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
* * * *
117026358 TAC TGT TAT GTACA TAT TAT T-T ATAC TA- TACT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TA-T TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT
117026405 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
117026452 TATT TAC TAT TAT TATT TAT AAA TAT TAGT GTA- TAT T-T TAT T-T TAA
1 TA-T TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT
*
117026498 TAT CAT TA- TAT TAT GT-T TACT T-T T-T TGAAT T-T TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT -TAT TA-T TAT TAT T--AT TAT TAT TAT TAT TAT
* * * *
117026541 TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT GTACA TAT TAT T-T
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT
* * * * *
117026588 ATAC TA- TACT TAA TAT TAT TAT CAT TAT TAT TA- CAT TAC TAT TAT
1 -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
117026633 TATT TAT AAA TAT TAGT GTA- TAT TTT TAT TA- TAT ATAT T-T ATAT
1 TA-T TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT -TAT TAT -TAT
* * *
117026677 ATACT CT-T TAT GTAT GGTAT T-T T-T TAA CAT TAT TA- TATT TAC TAT
1 -TA-T -TAT TAT -TAT --TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* *
117026722 TA- TATT TAT ATAT CTAA TA- TAT TA- TAT T-T TAT T-T TCCT TACCT
1 TAT TA-T TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT T-AT TA--T
* * * * * * * * *
117026765 CAT TAT TACGT CA- TAC T-T TCT TTT GTAT TTT TAC TAT TAT TGT GAT
1 TAT TAT TA--T TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
*
117026811 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
117026859 ATAA TAT TAT TA
1 -TAT TAT TAT TA
117026871 ATAGGTACTT
Statistics
Matches: 422, Mismatches: 71, Indels: 126
0.68 0.11 0.20
Matches are distributed among these distances:
2 50 0.12
3 300 0.71
4 56 0.13
5 16 0.04
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:117026327 original size:45 final size:46
Alignment explanation
Indices: 117026248--117026335 Score: 119
Period size: 45 Copynumber: 1.9 Consensus size: 46
117026238 TATATCTACA
117026248 TAGTATTTTTTAAATTATCTTATTTTAATATTATTA-TATTATGTT
1 TAGTATTTTTTAAATTATCTTATTTTAATATTATTATTATTATGTT
* *
117026293 TAGT-TTTTTTGAATT-TCTATATTATTATTATTATTATTATTAT
1 TAGTATTTTTTAAATTATCT-TATT-TTAATATTATTATTATTAT
117026336 TATTATTGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
43 3 0.08
44 14 0.37
45 15 0.39
46 6 0.16
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (46 bp):
TAGTATTTTTTAAATTATCTTATTTTAATATTATTATTATTATGTT
Found at i:117026561 original size:19 final size:19
Alignment explanation
Indices: 117026537--117026573 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
117026527 TTTTATATTA
*
117026537 TTATTATTATTATTGTTAC
1 TTATTATTATTACTGTTAC
117026556 TTATTATTATTACTGTTA
1 TTATTATTATTACTGTTA
117026574 TGTACATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (19 bp):
TTATTATTATTACTGTTAC
Found at i:117028148 original size:16 final size:17
Alignment explanation
Indices: 117028122--117028156 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
117028112 GCAACCAAAG
*
117028122 AGAAGTTCATGCACGTA
1 AGAAGTTCATGCACATA
117028139 AGAA-TTCATGCACATA
1 AGAAGTTCATGCACATA
117028155 AG
1 AG
117028157 TCTTGCGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (17 bp):
AGAAGTTCATGCACATA
Found at i:117036135 original size:12 final size:12
Alignment explanation
Indices: 117036093--117036134 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
117036083 TGATTTTATG
117036093 TAAAATATTTTT
1 TAAAATATTTTT
117036105 TAAAATCATTTTT
1 TAAAAT-ATTTTT
117036118 T-AAAT-TTTTT
1 TAAAATATTTTT
117036128 ATAAAAT
1 -TAAAAT
117036135 TATATATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 5 0.19
11 1 0.04
12 14 0.52
13 7 0.26
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (12 bp):
TAAAATATTTTT
Found at i:117038183 original size:19 final size:19
Alignment explanation
Indices: 117038159--117038199 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
117038149 TAAATATTTA
117038159 TTTATTAATTTTATTAGAG
1 TTTATTAATTTTATTAGAG
*
117038178 TTTATTCATTTTATTAGAG
1 TTTATTAATTTTATTAGAG
117038197 TTT
1 TTT
117038200 CGGTTATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (19 bp):
TTTATTAATTTTATTAGAG
Found at i:117042263 original size:8 final size:9
Alignment explanation
Indices: 117042228--117042270 Score: 54
Period size: 8 Copynumber: 4.8 Consensus size: 9
117042218 ACCAAATTTG
117042228 GTTAATTAA
1 GTTAATTAA
117042237 GATTAATATAA
1 G-TTAAT-TAA
117042248 GTTAATTAA
1 GTTAATTAA
117042257 G-TAATTAA
1 GTTAATTAA
117042265 -TTAATT
1 GTTAATT
117042271 TATAACCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 12 0.39
9 5 0.16
10 10 0.32
11 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (9 bp):
GTTAATTAA
Found at i:117043857 original size:14 final size:13
Alignment explanation
Indices: 117043838--117043871 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
117043828 ATTTGACTTA
117043838 TTCTTAATTATGTG
1 TTCTTAATTAT-TG
117043852 TTCTTAATTATTG
1 TTCTTAATTATTG
117043865 TT-TTAAT
1 TTCTTAAT
117043872 ATTCCAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.62
Consensus pattern (13 bp):
TTCTTAATTATTG
Found at i:117050258 original size:37 final size:37
Alignment explanation
Indices: 117050194--117050302 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
117050184 AGCTCAGATG
* * *
117050194 AAATCTCCACACGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
117050231 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
117050268 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
117050303 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:117050504 original size:48 final size:48
Alignment explanation
Indices: 117050449--117050839 Score: 683
Period size: 48 Copynumber: 8.1 Consensus size: 48
117050439 ACACATCGCC
*
117050449 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
117050497 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
117050547 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
117050595 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
117050643 TACATATTTCACATTGGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
117050691 TACATATTTCACATTGGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
117050739 TACATATTTCAAATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
117050787 TACATATTTCACATTATCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
117050835 TACAT
1 TACAT
117050840 CAATTTCCGC
Statistics
Matches: 328, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
48 282 0.86
50 46 0.14
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:117051921 original size:2 final size:2
Alignment explanation
Indices: 117051914--117051943 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
117051904 CATTAATCGT
117051914 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
117051944 CAGCATTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:117053743 original size:15 final size:16
Alignment explanation
Indices: 117053725--117053762 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
117053715 ATTTAAAGAC
117053725 TTTTTATTTTTAT-TT
1 TTTTTATTTTTATCTT
117053740 TTTTTATTTTTATCTT
1 TTTTTATTTTTATCTT
*
117053756 TATTTAT
1 TTTTTAT
117053763 CTTCTTTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTATTTTTATCTT
Found at i:117055650 original size:13 final size:13
Alignment explanation
Indices: 117055632--117055656 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
117055622 AGCAATAGCG
117055632 CACGGGCGTGTCA
1 CACGGGCGTGTCA
117055645 CACGGGCGTGTC
1 CACGGGCGTGTC
117055657 CCTGCCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCA
Found at i:117059033 original size:38 final size:38
Alignment explanation
Indices: 117058977--117059049 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
117058967 AATTTCATCA
* *
117058977 TCGCGACAAGGAGGCCTTGGGCCAAGTGAATATGTTAC
1 TCGCAACAAGGAGGCCTTGGGCCAAGTCAATATGTTAC
117059015 TCGCAACAAGGAGGCCTTGGGCCAAGTCAATATGT
1 TCGCAACAAGGAGGCCTTGGGCCAAGTCAATATGT
117059050 CACGTCACGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (38 bp):
TCGCAACAAGGAGGCCTTGGGCCAAGTCAATATGTTAC
Found at i:117065014 original size:6 final size:6
Alignment explanation
Indices: 117065003--117065079 Score: 131
Period size: 6 Copynumber: 13.2 Consensus size: 6
117064993 GCTCACCCTT
117065003 TATTCC TATTCC TATTCC TATTCC T-TTCC TATTCC TATTCC TATTCC
1 TATTCC TATTCC TATTCC TATTCC TATTCC TATTCC TATTCC TATTCC
*
117065050 TATTCC T-TTGC TATTCC TATTCC TATTCC T
1 TATTCC TATTCC TATTCC TATTCC TATTCC T
117065080 GGAGTCAACA
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
5 9 0.13
6 58 0.87
ACGTcount: A:0.14, C:0.32, G:0.01, T:0.52
Consensus pattern (6 bp):
TATTCC
Found at i:117065032 original size:23 final size:24
Alignment explanation
Indices: 117065003--117065079 Score: 131
Period size: 23 Copynumber: 3.3 Consensus size: 24
117064993 GCTCACCCTT
117065003 TATTCCTATTCCTATTCCTATTCC
1 TATTCCTATTCCTATTCCTATTCC
117065027 T-TTCCTATTCCTATTCCTATTCC
1 TATTCCTATTCCTATTCCTATTCC
*
117065050 TATTCCT-TTGCTATTCCTATTCC
1 TATTCCTATTCCTATTCCTATTCC
117065073 TATTCCT
1 TATTCCT
117065080 GGAGTCAACA
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
23 45 0.88
24 6 0.12
ACGTcount: A:0.14, C:0.32, G:0.01, T:0.52
Consensus pattern (24 bp):
TATTCCTATTCCTATTCCTATTCC
Found at i:117065038 original size:29 final size:29
Alignment explanation
Indices: 117065003--117065079 Score: 145
Period size: 29 Copynumber: 2.7 Consensus size: 29
117064993 GCTCACCCTT
117065003 TATTCCTATTCCTATTCCTATTCCTTTCC
1 TATTCCTATTCCTATTCCTATTCCTTTCC
*
117065032 TATTCCTATTCCTATTCCTATTCCTTTGC
1 TATTCCTATTCCTATTCCTATTCCTTTCC
117065061 TATTCCTATTCCTATTCCT
1 TATTCCTATTCCTATTCCT
117065080 GGAGTCAACA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.14, C:0.32, G:0.01, T:0.52
Consensus pattern (29 bp):
TATTCCTATTCCTATTCCTATTCCTTTCC
Found at i:117065185 original size:26 final size:27
Alignment explanation
Indices: 117065156--117065242 Score: 68
Period size: 26 Copynumber: 3.1 Consensus size: 27
117065146 ATAATTATTA
*
117065156 AAAAATATTTAGAAATATAAAAAAT-T
1 AAAAATATTAAGAAATATAAAAAATGT
* ** *
117065182 AAAATTATTAAGATTTATAAAAACTGT
1 AAAAATATTAAGAAATATAAAAAATGT
* * *
117065209 AAAAATTTATTAAAAAATAATAAAATATTT
1 AAAAA--TATTAAGAAAT-ATAAAAAATGT
117065239 AAAA
1 AAAA
117065243 TTGCAGTAAA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
26 20 0.44
27 5 0.11
29 8 0.18
30 12 0.27
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (27 bp):
AAAAATATTAAGAAATATAAAAAATGT
Found at i:117065630 original size:18 final size:20
Alignment explanation
Indices: 117065609--117065656 Score: 73
Period size: 18 Copynumber: 2.5 Consensus size: 20
117065599 TTAATATTTA
117065609 TTTTTAAATATTTT-T-ATT
1 TTTTTAAATATTTTATAATT
117065627 TTTTTAAATATTTTATAATT
1 TTTTTAAATATTTTATAATT
117065647 TTTTATAAAT
1 TTTT-TAAAT
117065657 TTCAATCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 14 0.52
19 1 0.04
20 7 0.26
21 5 0.19
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTAAATATTTTATAATT
Found at i:117072927 original size:38 final size:38
Alignment explanation
Indices: 117072871--117072950 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
117072861 GATTTGTATT
* * *
117072871 CGGGTTAAATCCCACAGGCTTTGTGCTGGTATTATATC
1 CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATC
* *
117072909 CGGGATAAATCCCACAGGCCTAGTGCTTGTATTATATT
1 CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATC
117072947 CGGG
1 CGGG
117072951 CCTTCGTGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
CGGGATAAATCCCACAGGCCTAGTGCTGGTATTATATC
Found at i:117072996 original size:43 final size:43
Alignment explanation
Indices: 117072943--117073110 Score: 255
Period size: 43 Copynumber: 3.9 Consensus size: 43
117072933 GCTTGTATTA
117072943 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
117072986 TATTCGGGCCTTTGAGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
117073029 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * * *
117073072 TATTCTGGCCTTTGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
117073111 AATGATATGT
Statistics
Matches: 113, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 113 1.00
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:117079064 original size:15 final size:16
Alignment explanation
Indices: 117079034--117079072 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
117079024 CACAACAGTA
*
117079034 AAAAAACACTGAAAAAG
1 AAAAAA-ACTGAAAAAC
117079051 AAAAAAACTG-AAAAC
1 AAAAAAACTGAAAAAC
117079066 AAAAAAA
1 AAAAAAA
117079073 AATAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.52
16 4 0.19
17 6 0.29
ACGTcount: A:0.77, C:0.10, G:0.08, T:0.05
Consensus pattern (16 bp):
AAAAAAACTGAAAAAC
Found at i:117079072 original size:18 final size:16
Alignment explanation
Indices: 117079033--117079082 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
117079023 CCACAACAGT
*
117079033 AAAAAAACACTGAAAA
1 AAAAAAAAACTGAAAA
*
117079049 AGAAAAAAACTGAAAA
1 AAAAAAAAACTGAAAA
117079065 CAAAAAAAAA-T-AAAA
1 -AAAAAAAAACTGAAAA
117079080 AAA
1 AAA
117079083 TGGGTCATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 3 0.10
15 4 0.13
16 15 0.50
17 8 0.27
ACGTcount: A:0.80, C:0.08, G:0.06, T:0.06
Consensus pattern (16 bp):
AAAAAAAAACTGAAAA
Found at i:117079262 original size:25 final size:25
Alignment explanation
Indices: 117079220--117079288 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
117079210 AATTAGCAGC
117079220 AAGGAGAAGAA-AATAAAAGGAAAGA-
1 AAGGAGAA-AAGAA-AAAAGGAAAGAG
* *
117079245 AAGGAGAAAAGAAGAAAAAGAAGGAG
1 AAGGAGAAAAGAA-AAAAGGAAAGAG
*
117079271 AAGGAAAAAAGAAAAAAG
1 AAGGAGAAAAGAAAAAAG
117079289 AAGGTATAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 2 0.05
25 23 0.62
26 12 0.32
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (25 bp):
AAGGAGAAAAGAAAAAAGGAAAGAG
Found at i:117079272 original size:15 final size:15
Alignment explanation
Indices: 117079220--117079279 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
117079210 AATTAGCAGC
*
117079220 AAGGAGAAGAAAATAA
1 AAGGAGAAGAAAA-AG
*
117079236 AAGGA-AAGAAAGGAG
1 AAGGAGAAGAAA-AAG
*
117079251 AA-AAGAAGAAAAAG
1 AAGGAGAAGAAAAAG
117079265 AAGGAGAAGGAAAAA
1 AAGGAGAA-GAAAAA
117079280 AGAAAAAAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
14 5 0.14
15 19 0.54
16 11 0.31
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (15 bp):
AAGGAGAAGAAAAAG
Found at i:117079415 original size:23 final size:24
Alignment explanation
Indices: 117079389--117079447 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 24
117079379 TAGTTATTAA
* **
117079389 TATTGTTAGTAAAAAACCCTTGTTAT
1 TATTGTTAGTAAAAAA-CCATAAT-T
117079415 TATTGTTAGTAAAAAACCATAA-T
1 TATTGTTAGTAAAAAACCATAATT
117079438 TATTGTTAGT
1 TATTGTTAGT
117079448 TATTATTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 11 0.37
25 3 0.10
26 16 0.53
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.42
Consensus pattern (24 bp):
TATTGTTAGTAAAAAACCATAATT
Found at i:117079440 original size:26 final size:26
Alignment explanation
Indices: 117079384--117079441 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
117079374 GTTGTTAGTT
* * *
117079384 ATTAATATTGTTAGTAAAAAACCCTT
1 ATTATTATTGTTAGTAAAAAACCATA
*
117079410 GTTATTATTGTTAGTAAAAAACCATA
1 ATTATTATTGTTAGTAAAAAACCATA
117079436 ATTATT
1 ATTATT
117079442 GTTAGTTATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (26 bp):
ATTATTATTGTTAGTAAAAAACCATA
Found at i:117084828 original size:72 final size:72
Alignment explanation
Indices: 117084711--117084851 Score: 219
Period size: 72 Copynumber: 2.0 Consensus size: 72
117084701 GCCCCCCGAT
* *
117084711 GAGCCCGGGAAATAGTTACTGCCCACCAAATCCAGATGATAAGAAGTATCAGCCGAATGTGAATG
1 GAGCCCGGGAAATAGTCACTACCCACCAAATCCAGATGATAAGAAGTATCAGCCGAATGTGAATG
117084776 CGATGAC
66 CGATGAC
* ** * *
117084783 GAGCCCGGGAAATAGTCATTACCTGCCAAATCCGGATGATAAGAAGTATCAGTCGAATGTGAATG
1 GAGCCCGGGAAATAGTCACTACCCACCAAATCCAGATGATAAGAAGTATCAGCCGAATGTGAATG
117084848 CGAT
66 CGAT
117084852 CGTTCGGACT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.20
Consensus pattern (72 bp):
GAGCCCGGGAAATAGTCACTACCCACCAAATCCAGATGATAAGAAGTATCAGCCGAATGTGAATG
CGATGAC
Found at i:117087039 original size:146 final size:148
Alignment explanation
Indices: 117086734--117087933 Score: 1444
Period size: 146 Copynumber: 8.1 Consensus size: 148
117086724 AATATTTTCG
* * * ** *
117086734 TATATTATTTTAGCAAAAAATGTTTCAAATGTATTAAGTAAGCGTTTTTTTATATTAATTTAATA
1 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG-TTTTTTATATTAATTTAATA
* * *
117086799 AATAACTCTGATTTTGGCACTTTCTTCGTAATTTTTTATTTTCGTATCTTATTTTTTAAAATATA
65 AATAACCCTGATTTTAGCACTTTATTCGT-A--TTTTATTTTCGTATCTTATTTTTTAAAATATA
*
117086864 TTATTTTCATATTTTATTTCTT
127 TTATTTTCGTATTTTATTTCTT
* **
117086886 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAATGTTTTTTATATTTTTTTAATAA
1 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTAATTTAATAA
117086951 ATAACCCTGATTTTAGCACTTTATTCGTA-TTT-TTTTCGTATCTTATTTTTTAAAATATATTAT
66 ATAACCCTGATTTTAGCACTTTATTCGTATTTTATTTTCGTATCTTATTTTTTAAAATATATTAT
117087014 TTTCGTATTTTATTTCTT
131 TTTCGTATTTTATTTCTT
* *
117087032 TATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTGTTTTTTTATATT-TTTTAATA
1 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG-TTTTTTATATTAATTTAATA
*
117087096 AATAACCCTGATTTTAGCACTTTATTCGTA-TTT-TTTTCGTACCTTATTTTTTAAAATATATTA
65 AATAACCCTGATTTTAGCACTTTATTCGTATTTTATTTTCGTATCTTATTTTTTAAAATATATTA
*
117087159 TTTTTGTATTTTATTTCTT
130 TTTTCGTATTTTATTTCTT
* * * *
117087178 TATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTTTTTTTATATTAATTTAATA
1 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG-TTTTTTATATTAATTTAATA
* *
117087243 AATAACCTTGATTTT-GACACTTTCTTCGTATTTTTTTATTTTCGTATCTTATTTTTTAAAATAT
65 AATAACCCTGATTTTAG-CACTTTATTCGTA---TTTTATTTTCGTATCTTATTTTTTAAAATAT
117087307 ATTATTTTCGTATTTTATTTTATTTCTT
126 ATTATTTTCG-----TATTTTATTTCTT
* * *
117087335 CATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTGTTTTTTTTATATT-TTTTCAA
1 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG--TTTTTTATATTAATTT-AA
* * * * *
117087399 TAAATAACCCTGATTTTAACACTTCATTTGCATTTT-TTTT-GTATATTATTTTTTAAAATATAT
63 TAAATAACCCTGATTTTAGCACTTTATTCGTATTTTATTTTCGTATCTTATTTTTTAAAATATAT
*
117087462 TATTTTTGTATTTTATTT-TT
128 TATTTTCGTATTTTATTTCTT
* * * *
117087482 TATATTATTTTAGCAAAAAATGTTTCAAATGTATTACTTAAGTGTTTCTTTATATTAATTTAATA
1 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTT-TTTATATTAATTTAATA
*
117087547 AATAACCCTGATTTT-GACACTTTCTTCGTAATTTTTTTATTTTCGTATCTTATTTTTTAAAATA
65 AATAACCCTGATTTTAG-CACTTTATTCGT-A---TTTTATTTTCGTATCTTATTTTTTAAAATA
117087611 TATTATTTTCGTATTTTATTTCTT
125 TATTATTTTCGTATTTTATTTCTT
**
117087635 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTTTAATA
1 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATA-TTAATTTAATA
* * * *
117087700 AATAACACTAATTTTAGTACTTTATTCGTATTTTTTATTTTCGTATATTATTTTTTAAAATATAT
65 AATAACCCTGATTTTAGCACTTTATTCGTA--TTTTATTTTCGTATCTTATTTTTTAAAATATAT
117087765 TATTTTCGTATTTTA------
128 TATTTTCGTATTTTATTTCTT
** *
117087780 T-T-TTA--GCA-TA-A-AATCTTTCAAATGTATTATTTAA--GTTTTTTATATTAATTTAATAA
1 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTAATTTAATAA
* * * * * * * *
117087836 ATAACCCTGACTTTGGCACATTGTTTGTATTTTTTTATTTTCGGATTTTATTTTTTAAAATATAC
66 ATAACCCTGATTTTAGCACTTTATTCGTA---TTTTATTTTCGTATCTTATTTTTTAAAATATAT
* *
117087901 TATTTTCATATTTTATTTTTT
128 TATTTTCGTATTTTATTTCTT
117087922 TATATTATTTTA
1 TATATTATTTTA
117087934 ACATAAAACT
Statistics
Matches: 923, Mismatches: 86, Indels: 84
0.84 0.08 0.08
Matches are distributed among these distances:
135 31 0.03
136 56 0.06
138 22 0.02
139 1 0.00
140 2 0.00
141 1 0.00
142 1 0.00
143 4 0.00
144 4 0.00
145 4 0.00
146 266 0.29
147 91 0.10
148 10 0.01
150 5 0.01
151 100 0.11
152 117 0.13
153 106 0.11
154 5 0.01
155 4 0.00
157 54 0.06
158 39 0.04
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.56
Consensus pattern (148 bp):
TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTAATTTAATAA
ATAACCCTGATTTTAGCACTTTATTCGTATTTTATTTTCGTATCTTATTTTTTAAAATATATTAT
TTTCGTATTTTATTTCTT
Found at i:117087325 original size:16 final size:16
Alignment explanation
Indices: 117087267--117087325 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
117087257 TGACACTTTC
*
117087267 TTCGTATTTTTTTATT
1 TTCGTATTTTATTATT
*
117087283 TTCGTATCTTATT-TT
1 TTCGTATTTTATTATT
** * *
117087298 TT-AAAATATATTATT
1 TTCGTATTTTATTATT
117087313 TTCGTATTTTATT
1 TTCGTATTTTATT
117087326 TTATTTCTTC
Statistics
Matches: 30, Mismatches: 11, Indels: 4
0.67 0.24 0.09
Matches are distributed among these distances:
14 5 0.17
15 8 0.27
16 17 0.57
ACGTcount: A:0.22, C:0.07, G:0.05, T:0.66
Consensus pattern (16 bp):
TTCGTATTTTATTATT
Found at i:117087478 original size:305 final size:299
Alignment explanation
Indices: 117086734--117087933 Score: 1599
Period size: 305 Copynumber: 4.0 Consensus size: 299
117086724 AATATTTTCG
* * * * ** * *
117086734 TATATTATTTTAGCAAAAAATGTTTCAAATGTATTAAGTAAGCGTTTTTTTATATTAATTTAATA
1 TATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTGTTTTTTTATATT-TTTTAATA
* * *
117086799 AATAACTCTGATTTTGGCACTTTC-TTCGTAATTTTTTATTTTCGTATCTTATTTTTTAAAATAT
65 AATAACCCTGATTTTAGCAC-TTCATTCGT-A-TTTTTATTTTCGTATATTATTTTTTAAAATAT
* * * * *
117086863 ATTATTTTCATATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAA
127 ATTATTTTCGTATTTTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAG
** *
117086928 TGTTTTTTATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCGTA----TTT-TTTT
191 TGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGA-CACTTTCTTCGTATTTTTTTATTTT
117086987 CGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
255 CGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
117087032 TATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTGTTTTTTTATATTTTTTAATAA
1 TATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTGTTTTTTTATATTTTTTAATAA
* **
117087097 ATAACCCTGATTTTAGCACTTTATTCGTA--TTT-TTTTCGTACCTTATTTTTTAAAATATATTA
66 ATAACCCTGATTTTAGCACTTCATTCGTATTTTTATTTTCGTATATTATTTTTTAAAATATATTA
* *
117087159 TTTTTGTATTTTATTTCTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTT
131 TTTTCGTATTTTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTG-T
*
117087224 TTTTTATATTAATTTAATAAATAACCTTGATTTTGACACTTTCTTCGTATTTTTTTATTTTCGTA
194 TTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTTTTTTATTTTCGTA
117087289 TCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTATTTCTT
259 TCTTATTTTTTAAAATATATTATTTTCG-----TATTTTATTTCTT
*
117087335 CATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTGTTTTTTTTATATTTTTTCAAT
1 TATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTG-TTTTTTTATATTTTTT-AAT
* * *
117087400 AAATAACCCTGATTTTAACACTTCATTTGCA-TTTT-TTTT-GTATATTATTTTTTAAAATATAT
64 AAATAACCCTGATTTTAGCACTTCATTCGTATTTTTATTTTCGTATATTATTTTTTAAAATATAT
* *
117087462 TATTTTTGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTACTTAAGTGT
129 TATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTGT
117087527 TTCTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTAATTTTTTTATTTTCG
194 TT-TTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGT-ATTTTTTTATTTTCG
117087592 TATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
257 TATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
* *
117087635 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTTTAATA
1 TATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTGTTTTTT-TATATTTTTTAATA
* * * *
117087700 AATAACACTAATTTTAGTACTTTATTCGTATTTTTTATTTTCGTATATTATTTTTTAAAATATAT
65 AATAACCCTGATTTTAGCACTTCATTCGTA-TTTTTATTTTCGTATATTATTTTTTAAAATATAT
* *
117087765 TATTTTCG-----TA-----T-T-TTATTTTAGCATAAAATCTTTCAAATGTATTATTTAA--GT
129 TATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTGT
* * * * * *
117087816 TTTTTATATTAATTTAATAAATAACCCTGACTTTGGCACATTGTTTGTATTTTTTTATTTTCGGA
194 TTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTTTTTTATTTTCGTA
* * * *
117087881 TTTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTT
259 TCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
117087922 TATATTATTTTA
1 TATATTATTTTA
117087934 ACATAAAACT
Statistics
Matches: 822, Mismatches: 57, Indels: 57
0.88 0.06 0.06
Matches are distributed among these distances:
287 65 0.08
288 41 0.05
289 4 0.00
291 34 0.04
292 86 0.10
293 48 0.06
294 1 0.00
296 3 0.00
297 33 0.04
298 87 0.11
299 33 0.04
300 64 0.08
301 4 0.00
302 4 0.00
303 89 0.11
304 105 0.13
305 114 0.14
306 7 0.01
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.56
Consensus pattern (299 bp):
TATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTGTTTTTTTATATTTTTTAATAA
ATAACCCTGATTTTAGCACTTCATTCGTATTTTTATTTTCGTATATTATTTTTTAAAATATATTA
TTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATTTAAGTGTTT
TTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTATTTTTTTATTTTCGTATC
TTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
Found at i:117087489 original size:12 final size:13
Alignment explanation
Indices: 117087434--117087492 Score: 57
Period size: 13 Copynumber: 4.3 Consensus size: 13
117087424 ATTTGCATTT
117087434 TTTTTGTATATTA
1 TTTTTGTATATTA
*
117087447 TTTTTTAAAATATATTA
1 -TTTTT---GTATATTA
*
117087464 TTTTTGTATTTTA
1 TTTTTGTATATTA
117087477 TTTTT-TATATTA
1 TTTTTGTATATTA
117087489 TTTT
1 TTTT
117087493 AGCAAAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 10 0.26
13 11 0.29
14 5 0.13
16 5 0.13
17 7 0.18
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.71
Consensus pattern (13 bp):
TTTTTGTATATTA
Found at i:117087589 original size:444 final size:447
Alignment explanation
Indices: 117086734--117087784 Score: 1539
Period size: 444 Copynumber: 2.3 Consensus size: 447
117086724 AATATTTTCG
* *
117086734 TATATTATTTTAGCAAAAAATGTTTCAAATGTATTAAGTAAGCGTTTTTTTATATTAATTTAATA
1 TATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTTTTTTTATATTAATTTAATA
*
117086799 AATAA-CTCTGATTTTGGCACTTTCTTCGTAATTTTTTATTTTCGTATCTTATTTTTTAAAATAT
66 AATAACCT-TGATTTTGACACTTTCTTCGT-ATTTTTTATTTTCGTATCTTATTTTTTAAAATAT
* *
117086863 ATTATTTTC--A---TATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTAT
129 ATTATTTTCGTATTTTATTTTATTTCTTCATATTATTTTAGTACATAATATTTCAAATGTATTAT
* * * *
117086923 TTAAATGTTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTC
194 TTAAATGTTTTTTATATTTTTTCAATAAATAACCCTGATTTTAACACTTCATTCGCATTTTTTTC
* * * *
117086988 GTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAAT
259 GTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGCAAAAAAT
* * *
117087053 ATTTCAAATGTATTATTTAAGTGTTTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTT
324 ATTTCAAATGTATTACTTAAGTGTTTCTTTATATTATTTAATAAATAACCCTGATTTTAGCACTT
* * * *
117087118 TATTCGTATTTTTTTCGTACCTTATTTTTTAAAATATATTATTTTTGTATTTTATTTCTT
389 TATTCGTAATATTTTC-TATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
117087178 TATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTTTTTTTATATTAATTTAATA
1 TATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTTTTTTTATATTAATTTAATA
117087243 AATAACCTTGATTTTGACACTTTCTTCGTATTTTTTTATTTTCGTATCTTATTTTTTAAAATATA
66 AATAACCTTGATTTTGACACTTTCTTCGTA-TTTTTTATTTTCGTATCTTATTTTTTAAAATATA
117087308 TTATTTTCGTATTTTATTTTATTTCTTCATATTATTTTAGTACATAATATTTCAAATGTATTATT
130 TTATTTTCGTATTTTATTTTATTTCTTCATATTATTTTAGTACATAATATTTCAAATGTATTATT
* *
117087373 TAAGTGTTTTTTTTATATTTTTTCAATAAATAACCCTGATTTTAACACTTCATTTGCATTTTTTT
195 TAAATG--TTTTTTATATTTTTTCAATAAATAACCCTGATTTTAACACTTCATTCGCATTTTTTT
* *
117087438 TGTATATTATTTTTTAAAATATATTATTTTTGTATTTTATTT-TTTATATTATTTTAGCAAAAAA
258 CGTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGCAAAAAA
*
117087502 TGTTTCAAATGTATTACTTAAGTGTTTCTTTATATTAATTTAATAAATAACCCTGATTTT-GACA
323 TATTTCAAATGTATTACTTAAGTGTTTCTTTATATT-ATTTAATAAATAACCCTGATTTTAG-CA
*
117087566 CTTTCTTCGTAATTTTTTTATTTTCGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATT
386 CTTTATTCGTAA------TATTTTC-TATCTTATTTTTTAAAATATATTATTTTCGTATTTTATT
117087631 TCTT
444 TCTT
* * * * **
117087635 TATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG-TTTTTTATATTTTTTTTAAT
1 TATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTTTTTTTATA-TTAATTTAAT
* * * *
117087699 AAATAACAC-TAATTTT-AGTACTTTATTCGTATTTTTTATTTTCGTATATTATTTTTTAAAATA
65 AAATAAC-CTTGATTTTGA-CACTTTCTTCGTATTTTTTATTTTCGTATCTTATTTTTTAAAATA
117087762 TATTATTTTCGTATTTTATTTTA
128 TATTATTTTCGTATTTTATTTTA
117087785 GCATAAAATC
Statistics
Matches: 551, Mismatches: 36, Indels: 28
0.90 0.06 0.05
Matches are distributed among these distances:
443 1 0.00
444 130 0.24
445 2 0.00
446 1 0.00
449 54 0.10
450 53 0.10
451 125 0.23
456 64 0.12
457 120 0.22
458 1 0.00
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (447 bp):
TATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGTTTTTTTATATTAATTTAATA
AATAACCTTGATTTTGACACTTTCTTCGTATTTTTTATTTTCGTATCTTATTTTTTAAAATATAT
TATTTTCGTATTTTATTTTATTTCTTCATATTATTTTAGTACATAATATTTCAAATGTATTATTT
AAATGTTTTTTATATTTTTTCAATAAATAACCCTGATTTTAACACTTCATTCGCATTTTTTTCGT
ATATTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGCAAAAAATAT
TTCAAATGTATTACTTAAGTGTTTCTTTATATTATTTAATAAATAACCCTGATTTTAGCACTTTA
TTCGTAATATTTTCTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTT
Found at i:117087755 original size:15 final size:16
Alignment explanation
Indices: 117087724--117087781 Score: 50
Period size: 15 Copynumber: 3.8 Consensus size: 16
117087714 TAGTACTTTA
*
117087724 TTCGTAT-TTTTTATT
1 TTCGTATATTATTATT
117087739 TTCGTATATTATT-TT
1 TTCGTATATTATTATT
***
117087754 TTAAAATA-TATTATT
1 TTCGTATATTATTATT
*
117087769 TTCGTATTTTATT
1 TTCGTATATTATT
117087782 TTAGCATAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
14 4 0.12
15 20 0.62
16 8 0.25
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (16 bp):
TTCGTATATTATTATT
Found at i:117087888 original size:136 final size:137
Alignment explanation
Indices: 117087639--117087919 Score: 368
Period size: 136 Copynumber: 2.1 Consensus size: 137
117087629 TTTCTTTATA
* * * **
117087639 TTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTGTTTTTTATATTTTTTTTAATAAATA
1 TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAG-GTTTTTTATATTTAATTTAATAAATA
* * * * *
117087704 ACACTAATTTTAGTACTTTATTCGTATTTTTTATTTTCGTATATTATTTTTTAAAATATATTATT
65 ACACTAACTTTAGCACATTATTCGTATTTTTTATTTTCGGATATTATTTTTTAAAATATACTATT
*
117087769 TTCGTATT
130 TTCATATT
*
117087777 TTATTTTAGCATAAAATCTTTCAAATGTATTATTTAA-GTTTTTTATA-TTAATTTAATAAATAA
1 TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAGGTTTTTTATATTTAATTTAATAAATAA
* * * * * *
117087840 CCCTGACTTTGGCACATTGTTTGTATTTTTTTATTTTCGGATTTTATTTTTTAAAATATACTATT
66 CACTAACTTTAGCACATTATTCGTA-TTTTTTATTTTCGGATATTATTTTTTAAAATATACTATT
117087905 TTCATATT
130 TTCATATT
117087913 TTATTTT
1 TTATTTT
117087920 TTTATATTAT
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
135 31 0.25
136 60 0.48
138 33 0.27
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (137 bp):
TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAGGTTTTTTATATTTAATTTAATAAATAA
CACTAACTTTAGCACATTATTCGTATTTTTTATTTTCGGATATTATTTTTTAAAATATACTATTT
TCATATT
Found at i:117088518 original size:16 final size:15
Alignment explanation
Indices: 117088497--117088553 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 15
117088487 TCCTCCTCCC
117088497 CTTCTTTTTCTTTCTT
1 CTTCTTTTT-TTTCTT
117088513 CTTCTTATCTTTTTCCCTT
1 CTTCTT-T-TTTTT--CTT
*
117088532 CTTCTCTTTTTTTTTT
1 CTTCT-TTTTTTTCTT
117088548 CTTCTT
1 CTTCTT
117088554 CTTCTTTGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
15 1 0.03
16 13 0.37
17 4 0.11
18 7 0.20
19 9 0.26
20 1 0.03
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (15 bp):
CTTCTTTTTTTTCTT
Found at i:117088544 original size:19 final size:21
Alignment explanation
Indices: 117088498--117088560 Score: 69
Period size: 19 Copynumber: 3.1 Consensus size: 21
117088488 CCTCCTCCCC
*
117088498 TTCTTTTT-CTTTCTTCTTCT
1 TTCTTTTTCCCTTCTTCTTCT
117088518 TATCTTTTTCCCTTCTTC-TCT
1 T-TCTTTTTCCCTTCTTCTTCT
**
117088539 TT-TTTTTTTCTTCTTCTTCT
1 TTCTTTTTCCCTTCTTCTTCT
117088559 TT
1 TT
117088561 GTTCCCGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 12 0.32
20 7 0.19
21 11 0.30
22 7 0.19
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (21 bp):
TTCTTTTTCCCTTCTTCTTCT
Found at i:117088694 original size:27 final size:27
Alignment explanation
Indices: 117088663--117088733 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
117088653 AGGCACCTGG
*
117088663 CACTGGTGTCGCCTTTGCCAGAGACAA
1 CACTGGTGTCGCCTCTGCCAGAGACAA
* * *
117088690 TACTGGTGCCGCCTCTGCCAGAGGCAA
1 CACTGGTGTCGCCTCTGCCAGAGACAA
*
117088717 CACTGGTATCGCCTCTG
1 CACTGGTGTCGCCTCTG
117088734 ACACCCACAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.18, C:0.32, G:0.27, T:0.23
Consensus pattern (27 bp):
CACTGGTGTCGCCTCTGCCAGAGACAA
Found at i:117088776 original size:17 final size:16
Alignment explanation
Indices: 117088750--117088787 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
117088740 ACATGACTCA
*
117088750 TTTTTTATTTTTTTTC
1 TTTTTAATTTTTTTTC
117088766 GTTTTTAATTTTTTTTC
1 -TTTTTAATTTTTTTTC
117088783 TTTTT
1 TTTTT
117088788 CAGTGCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.08, C:0.05, G:0.03, T:0.84
Consensus pattern (16 bp):
TTTTTAATTTTTTTTC
Found at i:117089098 original size:23 final size:21
Alignment explanation
Indices: 117089067--117089109 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
117089057 CTATCAAATT
117089067 TCTCCTTTAAAACTATATTATTC
1 TCTCCTTTAAAA-T-TATTATTC
*
117089090 TCTCTTTTAAAATTATTATT
1 TCTCCTTTAAAATTATTATT
117089110 AATAGTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 1 0.05
23 11 0.58
ACGTcount: A:0.30, C:0.16, G:0.00, T:0.53
Consensus pattern (21 bp):
TCTCCTTTAAAATTATTATTC
Found at i:117089229 original size:25 final size:25
Alignment explanation
Indices: 117089195--117089242 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
117089185 ATATTAGTCG
117089195 ATTAAATC-TTTCCAACATCATATTA
1 ATTAAATCTTTTCC-ACATCATATTA
117089220 ATTAAATCTTTTCCACATCATAT
1 ATTAAATCTTTTCCACATCATAT
117089243 CAGTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTAAATCTTTTCCACATCATATTA
Found at i:117089252 original size:26 final size:25
Alignment explanation
Indices: 117089195--117089250 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
117089185 ATATTAGTCG
*
117089195 ATTAAATCTTTCCAACATCATATTA
1 ATTAAATCTTTCCAACATCATATCA
117089220 ATTAAATCTTTTCC-ACATCATATCA
1 ATTAAATC-TTTCCAACATCATATCA
*
117089245 GTTAAA
1 ATTAAA
117089251 ATAAGCCCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 23 0.82
26 5 0.18
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (25 bp):
ATTAAATCTTTCCAACATCATATCA
Found at i:117094935 original size:28 final size:27
Alignment explanation
Indices: 117094868--117094931 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
117094858 AATCAAAAAT
117094868 TAAAATA-CTAATTAAACTAATTATCC
1 TAAAATACCTAATTAAACTAATTATCC
* *
117094894 TAAAATAACCTAATTAAATTGATTAAT-C
1 TAAAAT-ACCTAATTAAACTAATT-ATCC
117094922 TAAAATACCT
1 TAAAATACCT
117094932 TAATGGAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
26 6 0.18
27 5 0.15
28 20 0.61
29 2 0.06
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (27 bp):
TAAAATACCTAATTAAACTAATTATCC
Found at i:117094950 original size:20 final size:20
Alignment explanation
Indices: 117094925--117094964 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
117094915 ATTAATCTAA
117094925 AATACCTTAATGGAATTTCC
1 AATACCTTAATGGAATTTCC
117094945 AATACCTTAATGGAATTTCC
1 AATACCTTAATGGAATTTCC
117094965 TATTCCTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (20 bp):
AATACCTTAATGGAATTTCC
Found at i:117095665 original size:41 final size:41
Alignment explanation
Indices: 117095620--117095934 Score: 375
Period size: 41 Copynumber: 7.6 Consensus size: 41
117095610 AACTGAACAA
* *
117095620 TAGCGACGCTTTTGGAAAAATGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * * *
117095661 TAGCGGCACTTCTGGAAAAACGCTGCTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * * *
117095702 TAGCGGTGCTTTTGCAAAAACGCTGCTATAGGTCAAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* *
117095743 TAGCGGCGCTTCTGGAAAAACGCCGCTATAGGTAGAGGTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGG-TTT
* * *
117095785 TAGCGGCGCTTTTGTG-AAAATGCTGCTATAGG-CTGATGTTT
1 TAGCGGCGCTTTTG-GAAAAACGCCGCTATAGGTC-GAGGTTT
* *
117095826 TAGCGGCGCTTTTGGGAAAACGCCGCTATAGGTAGAGGTTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGG-TTT
* *
117095868 TAGCGGCGCTTTTGTG-AAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTG-GAAAAACGCCGCTATAGGTCGAGGTTT
* *
117095909 TAGCGGCGTTTTTGGAAAAACACCGC
1 TAGCGGCGCTTTTGGAAAAACGCCGC
117095935 AAAAAAGTAA
Statistics
Matches: 234, Mismatches: 32, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.01
41 161 0.69
42 69 0.29
43 2 0.01
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
Found at i:117095831 original size:83 final size:83
Alignment explanation
Indices: 117095620--117095934 Score: 420
Period size: 83 Copynumber: 3.8 Consensus size: 83
117095610 AACTGAACAA
* * *
117095620 TAGCGACGCTTTTG-GAAAAATGCCGCTATAGGTCGAGGTTTTAGCGGCACTTCTGGAAAAACGC
1 TAGCGGCGCTTTTGTG-AAAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAAAAACGC
*
117095684 TGCTATAGGTAGAGG-TTT
65 CGCTATAGGTAGAGGTTTT
* ** * *
117095702 TAGCGGTGCTTTTGCAAAAACGCTGCTATAGGTCAAGGTTTTAGCGGCGCTTCTGGAAAAACGCC
1 TAGCGGCGCTTTTGTGAAAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAAAAACGCC
117095767 GCTATAGGTAGAGGTTTT
66 GCTATAGGTAGAGGTTTT
* * * * *
117095785 TAGCGGCGCTTTTGTGAAAATGCTGCTATAGG-CTGATGTTTTAGCGGCGCTTTTGGGAAAACGC
1 TAGCGGCGCTTTTGTGAAAACGCCGCTATAGGTC-GAGGTTTTAGCGGCGCTTCTGGAAAAACGC
117095849 CGCTATAGGTAGAGGTTTT
65 CGCTATAGGTAGAGGTTTT
* * * * *
117095868 TAGCGGCGCTTTTGTGAAAACGCCGCTATAGGCCGATGTTTTAGCGGCGTTTTTGGAAAAACACC
1 TAGCGGCGCTTTTGTGAAAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAAAAACGCC
117095933 GC
66 GC
117095935 AAAAAAGTAA
Statistics
Matches: 208, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
82 71 0.34
83 136 0.65
84 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (83 bp):
TAGCGGCGCTTTTGTGAAAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAAAAACGCC
GCTATAGGTAGAGGTTTT
Found at i:117096270 original size:18 final size:18
Alignment explanation
Indices: 117096241--117096291 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
117096231 TTGTCCCTTG
117096241 TTATATATATATATTAAAC
1 TTATA-ATATATATTAAAC
* **
117096260 TTCTAATATATATTAAGT
1 TTATAATATATATTAAAC
117096278 TTATAATATATATT
1 TTATAATATATATT
117096292 TAGGGTGTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (18 bp):
TTATAATATATATTAAAC
Found at i:117096732 original size:15 final size:15
Alignment explanation
Indices: 117096712--117096746 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
117096702 GATTTTAATG
*
117096712 TATAAGATAAATGTA
1 TATAAGATAAATATA
117096727 TATAAGATAAATATA
1 TATAAGATAAATATA
117096742 TATAA
1 TATAA
117096747 ATTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (15 bp):
TATAAGATAAATATA
Found at i:117096784 original size:23 final size:23
Alignment explanation
Indices: 117096718--117096784 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 23
117096708 AATGTATAAG
*
117096718 ATAAATGTATATAAGATAAATATAT
1 ATAAAT-TATATATGA-AAATATAT
* *
117096743 ATAAATTATTATTTTAAAA-ATAT
1 ATAAATTA-TATATGAAAATATAT
117096766 ATAAATATATATATGAAAA
1 ATAAAT-TATATATGAAAA
117096785 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 18 0.51
24 7 0.20
25 10 0.29
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
ATAAATTATATATGAAAATATAT
Found at i:117097752 original size:10 final size:10
Alignment explanation
Indices: 117097737--117097767 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
117097727 GCGTGTTAGA
117097737 TAAATTCATG
1 TAAATTCATG
117097747 TAAATTCATG
1 TAAATTCATG
117097757 TAAATTCATG
1 TAAATTCATG
117097767 T
1 T
117097768 TTGCTCAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.42
Consensus pattern (10 bp):
TAAATTCATG
Found at i:117099123 original size:15 final size:15
Alignment explanation
Indices: 117099079--117099134 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
117099069 AACGACATGT
117099079 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
117099095 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
117099108 ATATTATTTAATTAA
1 ATATTATTTAATTAA
117099123 ATATTATTTAAT
1 ATATTATTTAAT
117099135 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:117099251 original size:9 final size:9
Alignment explanation
Indices: 117099239--117099464 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
117099229 TATTTGATAT
*
117099239 CATAATTTA
1 CATAACTTA
117099248 CATAACTTA
1 CATAACTTA
* *
117099257 TATAACATA
1 CATAACTTA
*
117099266 TATAACTTA
1 CATAACTTA
117099275 CATAACTTA
1 CATAACTTA
* *
117099284 TATAACATA
1 CATAACTTA
117099293 CATAACTTA
1 CATAACTTA
*
117099302 TATAACTTA
1 CATAACTTA
*
117099311 TATAACTTA
1 CATAACTTA
* *
117099320 GATAA-ATA
1 CATAACTTA
*
117099328 TATAACTTA
1 CATAACTTA
117099337 CATAACTTA
1 CATAACTTA
117099346 CATAATACTTA
1 CAT-A-ACTTA
* *
117099357 AATATATTTTATA
1 CATA-A--CT-TA
*
117099370 TCATAATTTA
1 -CATAACTTA
117099380 CATAACTTA
1 CATAACTTA
117099389 CATAACTTA
1 CATAACTTA
*
117099398 TATAACTTA
1 CATAACTTA
* *
117099407 GATAA-ATA
1 CATAACTTA
* *
117099415 TATAATTTA
1 CATAACTTA
*
117099424 CATAA-ATA
1 CATAACTTA
* * *
117099432 TATATCATA
1 CATAACTTA
*
117099441 TCATAAATTA
1 -CATAACTTA
117099451 CATAACTTA
1 CATAACTTA
117099460 CATAA
1 CATAA
117099465 TACTTAAATA
Statistics
Matches: 174, Mismatches: 33, Indels: 20
0.77 0.15 0.09
Matches are distributed among these distances:
8 17 0.10
9 130 0.75
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:117099261 original size:18 final size:18
Alignment explanation
Indices: 117099239--117099464 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
117099229 TATTTGATAT
* *
117099239 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
117099257 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
117099275 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
117099293 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
117099311 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
117099328 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
117099346 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
117099370 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
117099389 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
117099407 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
117099424 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
117099441 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
117099460 CATAA
1 CATAA
117099465 TACTTAAATA
Statistics
Matches: 164, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
17 38 0.23
18 92 0.56
19 11 0.07
20 5 0.03
21 4 0.02
22 4 0.02
23 4 0.02
24 3 0.02
25 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:117099452 original size:114 final size:114
Alignment explanation
Indices: 117099267--117099488 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
117099257 TATAACATAT
* * *
117099267 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
117099332 ACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
117099381 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATA-AATAT-A
117099444 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
117099489 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:117105141 original size:21 final size:21
Alignment explanation
Indices: 117105108--117105158 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
117105098 ACAACTTAGA
*
117105108 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
117105129 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
117105150 GCAGAGGCA
1 GCAGAGGCA
117105159 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:117105448 original size:31 final size:31
Alignment explanation
Indices: 117105412--117105478 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
117105402 TTGTTGTATT
* *
117105412 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
117105443 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
117105474 TTTTA
1 TTTTA
117105479 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:117105577 original size:43 final size:43
Alignment explanation
Indices: 117105530--117105710 Score: 204
Period size: 43 Copynumber: 4.2 Consensus size: 43
117105520 ATTTGCCAAA
**
117105530 TTTAGCGGCGTTTGT-AAAAAAAGCGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTGTCCCAAAAA-CGCCGCTAAAAGCCTTGACC
* * *
117105573 TTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAAGCCTTGACC
1 TTTAGCGGCGTTTGTCCCAAAAACGCCGCTAAAAGCCTTGACC
* *** * *
117105616 TTTAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGCCTTAACC
1 TTTAGCGGCGTTTGTCCCAAAAACGCCGCTAAAAGCCTTGACC
* * *
117105659 TTTAGTGGCGCTTT-TCCCACAAACGCCCCTAAAAGCCTTGACC
1 TTTAGCGGCG-TTTGTCCCAAAAACGCCGCTAAAAGCCTTGACC
117105702 TTTAGCGGC
1 TTTAGCGGC
117105711 ATTTTTTTCC
Statistics
Matches: 112, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
43 105 0.94
44 7 0.06
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTCCCAAAAACGCCGCTAAAAGCCTTGACC
Found at i:117105677 original size:86 final size:86
Alignment explanation
Indices: 117105530--117105714 Score: 298
Period size: 86 Copynumber: 2.2 Consensus size: 86
117105520 ATTTGCCAAA
* *
117105530 TTTAGCGGCGTTTGTAAAAAAAGCGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTCTCCCACAA
1 TTTAGCGGCATTTGTAAAAAAAGCGCCGCTAAAAGCCTTAACCTTTAGCGGCGCTTCTCCCACAA
*
117105595 ACGCCGCTAAAAGCCTTGACC
66 ACGCCCCTAAAAGCCTTGACC
*** * *
117105616 TTTAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGCCTTAACCTTTAGTGGCGCTTTTCCCACAA
1 TTTAGCGGCATTTGTAAAAAAAGCGCCGCTAAAAGCCTTAACCTTTAGCGGCGCTTCTCCCACAA
117105681 ACGCCCCTAAAAGCCTTGACC
66 ACGCCCCTAAAAGCCTTGACC
117105702 TTTAGCGGCATTT
1 TTTAGCGGCATTT
117105715 TTTTCCAATA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 91 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (86 bp):
TTTAGCGGCATTTGTAAAAAAAGCGCCGCTAAAAGCCTTAACCTTTAGCGGCGCTTCTCCCACAA
ACGCCCCTAAAAGCCTTGACC
Found at i:117108591 original size:40 final size:40
Alignment explanation
Indices: 117108536--117108757 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
117108526 TATTCAGATG
117108536 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
117108576 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
117108616 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
117108656 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
117108696 ATAACCGGGCTAAATTCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* * *
117108736 ATATCC-GGTTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
117108758 TACTTGGTTT
Statistics
Matches: 173, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 16 0.09
40 157 0.91
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:117113613 original size:26 final size:26
Alignment explanation
Indices: 117113584--117113665 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
117113574 TGGTACAAAT
*
117113584 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
117113610 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
117113636 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
117113662 TGAT
1 TGAT
117113666 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:117115309 original size:27 final size:27
Alignment explanation
Indices: 117115270--117115346 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
117115260 GGAAGCGTCT
*
117115270 TGGTGGCTATGCCACAATTATCTG-ATC
1 TGGTGGCTCTGCCACAA-TATCTGTATC
117115297 TGGTGGCTCTGCCACAATATCTGTATC
1 TGGTGGCTCTGCCACAATATCTGTATC
* * *
117115324 TGGTGACTCCGTCACAATATCTG
1 TGGTGGCTCTGCCACAATATCTG
117115347 GCAGCCTCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.13
27 39 0.87
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATATCTGTATC
Found at i:117121038 original size:47 final size:45
Alignment explanation
Indices: 117120878--117121239 Score: 243
Period size: 47 Copynumber: 7.8 Consensus size: 45
117120868 GGGATATATT
* * **
117120878 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTA-G
* * *
117120927 TGCTGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCT-TA-
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTAG
* * *
117120972 GTCGATGCGTGTCCCAGACATGTTTTACACTGGCTATCTCTGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT--AG
* * *
117121019 GCTGATGCATGTCCCAGACATATCTTACACTGTCACTCATCTCTGT--
1 GCCGATGCATGTCCCAGACATGTCTTACACTG--GCT-ATCTCTGTAG
*
117121065 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGTATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTA-G
* * * * ** *
117121113 GCTGTTGCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTGGA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATC-TCTGTAG
* * * *
117121158 TCCGATGCCATGTCCCAGACATGGTTTTACACTAGCTATCATAATGT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTAG
* * *
117121206 GCCGATGCTTGTCCCAGACATGTTTTACATTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
117121240 GCACAAATCG
Statistics
Matches: 248, Mismatches: 45, Indels: 42
0.74 0.13 0.13
Matches are distributed among these distances:
43 6 0.02
44 30 0.12
45 9 0.04
46 49 0.20
47 85 0.34
48 37 0.15
49 18 0.07
50 14 0.06
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTAG
Found at i:117121188 original size:93 final size:92
Alignment explanation
Indices: 117120879--117121234 Score: 381
Period size: 93 Copynumber: 3.8 Consensus size: 92
117120869 GGATATATTG
*
117120879 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACATGTGCTGATGCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGT-CATG-GCTGATGCATGTCCC
* *
117120943 AGACATGTCTTACACTAGCACATCTCTTAGT
64 AGACATGTCTTACACTAGC-CCTCTCTGA-T
* * *
117120974 -CGATG-CGTGTCCCAGACAT-GTTTTACACTGGCTATC-TCTGTCGA-GGCTGATGCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGTC-ATGGCTGATGCATGTCCC
*
117121034 AGACATATCTTACACT-GTCACTCATCTCTG-T
64 AGACATGTCTTACACTAG-C-C-C-TCTCTGAT
*
117121065 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGT-ATGGCTGTTGCATGTCCCA
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTCATGGCTGATGCATGTCCCA
*
117121129 AACATGTCTTACACTAGCCCTCGTCTGGAT
65 GACATGTCTTACACTAGCCCTC-TCT-GAT
* * * * * *
117121159 CCGATGCCATGTCCCAGACATGGTTTTACACTAGCTATCATAAT-GTGGCCGATGCTTGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTCATGGCTGATGCATGTCCCAG
*
117121223 ACATGTTTTACA
66 ACATGTCTTACA
117121235 TTGGCGCACA
Statistics
Matches: 223, Mismatches: 22, Indels: 34
0.80 0.08 0.12
Matches are distributed among these distances:
90 1 0.00
91 37 0.17
92 21 0.09
93 95 0.43
94 49 0.22
95 19 0.09
96 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (92 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTCATGGCTGATGCATGTCCCAG
ACATGTCTTACACTAGCCCTCTCTGAT
Found at i:117121221 original size:187 final size:184
Alignment explanation
Indices: 117120877--117121226 Score: 476
Period size: 187 Copynumber: 1.9 Consensus size: 184
117120867 TGGGATATAT
*
117120877 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACATGTGCTGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATA-ATGTGCTGATGCATGTCC
* * * *
117120942 CAGACATGTCTTACACTAGCACATCTCTTAGTCGATGCGTGTCCCAGACATGTTTTACACTGGCT
65 CAAACATGTCTTACACTAGCACATCTCTGAGTCGATGCATGTCCCAGACATGTTTTACACTAGCT
* *
117121007 ATCTCTGTCGAGGCTGATGCATGTCCCAGACATATCTTACACTGTCACTCATCTCTG
130 ATCTATGT--AGGCCGATGCATGTCCCAGACATATCTTACACTGTCACTCATCTCTG
*
117121064 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGT-ATG-GCTGTTGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATA-TAATGTGCTGATGCATGTCC
*
117121127 CAAACATGTCTTACACTAGC-CCTCGTCTG-GATCCGATGCCATGTCCCAGACATGGTTTTACAC
65 CAAACATGTCTTACACTAGCACATC-TCTGAG-T-CGATG-CATGTCCCAGACAT-GTTTTACAC
*
117121190 TAGCTATCATAATGT-GGCCGATGCTTGTCCCAGACAT
125 TAGCTATC-T-ATGTAGGCCGATGCATGTCCCAGACAT
117121227 GTTTTACATT
Statistics
Matches: 145, Mismatches: 10, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
184 4 0.03
185 36 0.25
186 8 0.06
187 76 0.52
188 17 0.12
189 1 0.01
190 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.30
Consensus pattern (184 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATAATGTGCTGATGCATGTCCC
AAACATGTCTTACACTAGCACATCTCTGAGTCGATGCATGTCCCAGACATGTTTTACACTAGCTA
TCTATGTAGGCCGATGCATGTCCCAGACATATCTTACACTGTCACTCATCTCTG
Found at i:117123676 original size:28 final size:28
Alignment explanation
Indices: 117123612--117123685 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
117123602 ATATATATAC
* ***
117123612 AATTTGCACACTTAGTGCTTAATATTTA
1 AATTTGCACACTTAGTGCTCAATAACCA
* *
117123640 AACTCGCACACTTAGTGCTCAATAACCA
1 AATTTGCACACTTAGTGCTCAATAACCA
*
117123668 CATTTGCACACTTAGTGC
1 AATTTGCACACTTAGTGC
117123686 AAGATTCACA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.32
Consensus pattern (28 bp):
AATTTGCACACTTAGTGCTCAATAACCA
Done.