Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 383 of 425
Found at i:117839039 original size:11 final size:11
Alignment explanation
Indices: 117839023--117839054 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
117839013 CAAGTACATA
117839023 TGCTCTTTTTT
1 TGCTCTTTTTT
117839034 TGCTCTTTTTT
1 TGCTCTTTTTT
*
117839045 TGTTCTTTTT
1 TGCTCTTTTT
117839055 CTTTTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.16, G:0.09, T:0.75
Consensus pattern (11 bp):
TGCTCTTTTTT
Found at i:117839061 original size:5 final size:5
Alignment explanation
Indices: 117839037--117839079 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
117839027 CTTTTTTTGC
*
117839037 TCTTT TTTTGT TCTTTT TCTTT TCTTT TCTTT TCTTT T-TTT TC
1 TCTTT TCTT-T TC-TTT TCTTT TCTTT TCTTT TCTTT TCTTT TC
117839080 ACGAGCATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 4 0.12
5 22 0.67
6 5 0.15
7 2 0.06
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.81
Consensus pattern (5 bp):
TCTTT
Found at i:117839061 original size:11 final size:11
Alignment explanation
Indices: 117839037--117839075 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
117839027 CTTTTTTTGC
117839037 TCTTTTT-TTGT
1 TCTTTTTCTT-T
117839048 TCTTTTTCTTT
1 TCTTTTTCTTT
117839059 TC-TTTTCTTT
1 TCTTTTTCTTT
117839069 TCTTTTT
1 TCTTTTT
117839076 TTTCACGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.38
11 14 0.54
12 2 0.08
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (11 bp):
TCTTTTTCTTT
Found at i:117845958 original size:26 final size:26
Alignment explanation
Indices: 117845939--117846045 Score: 151
Period size: 26 Copynumber: 4.1 Consensus size: 26
117845929 TCACATGAGT
* *
117845939 TGTGAAATAGGCCTACTCACACGAGC
1 TGTGAAATGGGCCTACTCACACAAGC
* *
117845965 TGTGAAATGGGCTTGCTCACACAAGC
1 TGTGAAATGGGCCTACTCACACAAGC
*
117845991 TGTGAAATGGGCCTACTCATACAAGC
1 TGTGAAATGGGCCTACTCACACAAGC
* *
117846017 TGTGACATGGGCCTACTCACACGAGC
1 TGTGAAATGGGCCTACTCACACAAGC
117846043 TGT
1 TGT
117846046 AGGTCGGAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.22
Consensus pattern (26 bp):
TGTGAAATGGGCCTACTCACACAAGC
Found at i:117854036 original size:37 final size:37
Alignment explanation
Indices: 117853986--117854061 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
117853976 TAAAAATCCT
117853986 ATGGGATAAAAACCTAATGAAGGAAAAAGAATACACA
1 ATGGGATAAAAACCTAATGAAGGAAAAAGAATACACA
117854023 ATGGGATAAAAACCTAATGAAGGAAAAAGAATACACA
1 ATGGGATAAAAACCTAATGAAGGAAAAAGAATACACA
117854060 AT
1 AT
117854062 CTCCTATTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.57, C:0.11, G:0.18, T:0.14
Consensus pattern (37 bp):
ATGGGATAAAAACCTAATGAAGGAAAAAGAATACACA
Found at i:117856659 original size:5 final size:5
Alignment explanation
Indices: 117856649--117856687 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
117856639 ATACTTAAGT
117856649 ATATA ATATA ATAT- ATATTA ATATA ATAATA ATATA ATA
1 ATATA ATATA ATATA ATA-TA ATATA AT-ATA ATATA ATA
117856688 AAACATAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 3 0.10
5 20 0.65
6 8 0.26
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:117860462 original size:21 final size:21
Alignment explanation
Indices: 117860438--117860478 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
117860428 ATTCTGCTCC
*
117860438 GCCTCCCTCGCTGCTGCCTCA
1 GCCTCCCGCGCTGCTGCCTCA
117860459 GCCTCCCGCGCTGCTGCCTC
1 GCCTCCCGCGCTGCTGCCTC
117860479 CGCTCTAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.54, G:0.22, T:0.22
Consensus pattern (21 bp):
GCCTCCCGCGCTGCTGCCTCA
Found at i:117866832 original size:15 final size:15
Alignment explanation
Indices: 117866812--117866840 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
117866802 ACAATTTTGA
117866812 AATAAAACGTACCTT
1 AATAAAACGTACCTT
117866827 AATAAAACGTACCT
1 AATAAAACGTACCT
117866841 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:117869685 original size:35 final size:35
Alignment explanation
Indices: 117869639--117869706 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
117869629 GTGATTGATT
*
117869639 GAGTCACGTACATGATGCACATAATTCACATAATA
1 GAGTCACGTACATGATGCACAGAATTCACATAATA
*
117869674 GAGTCATGTACATGATGCACAGAATTCACATAA
1 GAGTCACGTACATGATGCACAGAATTCACATAA
117869707 CAAGCAATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (35 bp):
GAGTCACGTACATGATGCACAGAATTCACATAATA
Found at i:117870622 original size:8 final size:8
Alignment explanation
Indices: 117870611--117870639 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
117870601 TTTTAATTTC
117870611 AACCCTAA
1 AACCCTAA
117870619 AACCCTAA
1 AACCCTAA
117870627 AACCCTAA
1 AACCCTAA
117870635 AACCC
1 AACCC
117870640 CAAACTCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.41, G:0.00, T:0.10
Consensus pattern (8 bp):
AACCCTAA
Found at i:117870649 original size:7 final size:7
Alignment explanation
Indices: 117870634--117870674 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
117870624 TAAAACCCTA
*
117870634 AAACCCC
1 AAACTCC
117870641 AAACTCC
1 AAACTCC
*
117870648 AAACTCT
1 AAACTCC
117870655 AAACTCC
1 AAACTCC
*
117870662 AAACCCC
1 AAACTCC
117870669 AAACTC
1 AAACTC
117870675 GACCTAAATC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (7 bp):
AAACTCC
Found at i:117870663 original size:21 final size:21
Alignment explanation
Indices: 117870634--117870674 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
117870624 TAAAACCCTA
*
117870634 AAACCCCAAACTCCAAACTCT
1 AAACCCCAAACCCCAAACTCT
*
117870655 AAACTCCAAACCCCAAACTC
1 AAACCCCAAACCCCAAACTC
117870675 GACCTAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (21 bp):
AAACCCCAAACCCCAAACTCT
Found at i:117870672 original size:14 final size:14
Alignment explanation
Indices: 117870634--117870674 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
117870624 TAAAACCCTA
117870634 AAACCCCAAACTCC
1 AAACCCCAAACTCC
* *
117870648 AAACTCTAAACTCC
1 AAACCCCAAACTCC
117870662 AAACCCCAAACTC
1 AAACCCCAAACTC
117870675 GACCTAAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (14 bp):
AAACCCCAAACTCC
Found at i:117871312 original size:7 final size:7
Alignment explanation
Indices: 117871300--117871339 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
117871290 TCCCTTAATC
117871300 CTAACCA
1 CTAACCA
117871307 CTAACCA
1 CTAACCA
117871314 CTAACCA
1 CTAACCA
117871321 CT-ACCA
1 CTAACCA
117871327 CTAACCA
1 CTAACCA
117871334 CTAACC
1 CTAACC
117871340 CTTCAACCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.40, C:0.45, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAACCA
Found at i:117871328 original size:13 final size:13
Alignment explanation
Indices: 117871300--117871336 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
117871290 TCCCTTAATC
117871300 CTAACCACTAACCA
1 CTAACCACT-ACCA
117871314 CTAACCACTACCA
1 CTAACCACTACCA
117871327 CTAACCACTA
1 CTAACCACTA
117871337 ACCCTTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.41, C:0.43, G:0.00, T:0.16
Consensus pattern (13 bp):
CTAACCACTACCA
Found at i:117871431 original size:14 final size:13
Alignment explanation
Indices: 117871381--117871446 Score: 51
Period size: 14 Copynumber: 4.7 Consensus size: 13
117871371 ATCAAGCTCA
*
117871381 AACCCTCAATCAT
1 AACCCTAAATCAT
* *
117871394 AAAACATAAATCAT
1 -AACCCTAAATCAT
117871408 CAACCCTAAATCAT
1 -AACCCTAAATCAT
*
117871422 AACCCTTAAACCCAT
1 AACCC-TAAA-TCAT
117871437 AACCCCTAAA
1 AA-CCCTAAA
117871447 CCTATAAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
13 5 0.12
14 25 0.60
15 9 0.21
16 3 0.07
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (13 bp):
AACCCTAAATCAT
Found at i:117871439 original size:15 final size:15
Alignment explanation
Indices: 117871419--117871453 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
117871409 AACCCTAAAT
*
117871419 CATAACCCTTAAACC
1 CATAACCCCTAAACC
117871434 CATAACCCCTAAACC
1 CATAACCCCTAAACC
*
117871449 TATAA
1 CATAA
117871454 AAATATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (15 bp):
CATAACCCCTAAACC
Found at i:117872269 original size:115 final size:114
Alignment explanation
Indices: 117872015--117872485 Score: 482
Period size: 114 Copynumber: 4.1 Consensus size: 114
117872005 GTTTTTCAAG
* *** * * * ** *
117872015 AAACGCCGCTAATGCCATTGAAGTTCAAACAAAACGACGTCGATCTGCTTAATGTTTTCGCGGCA
1 AAACGCCGCTAATGCCATTGAAGCTCATTTAAAACGATGTCGTTTTGCTTAACCTTTTAGCGGCA
* * *
117872080 TTTTTACAAAAAAACGCCGTTAAAGATTGATATATTGTGGCGTTTTTAGTA
66 TTTTTAC-AAAAAACGCCGCTAAAG-TTGATATATTGTGGCGTTTTTGGGA
* ** *
117872131 AAACGCCGCTAATGCCATTGAAGCTAATTTAAAACGATGTCGTGCTGGTTAACCTTTTAGCGGCA
1 AAACGCCGCTAATGCCATTGAAGCTCATTTAAAACGATGTCGTTTTGCTTAACCTTTTAGCGGCA
* * * *
117872196 TTTTTA-ACAAAAATGCCGCTAAAGTGCGAGATATTGTGGCATTTTTGGGA
66 TTTTTACA-AAAAACGCCGCTAAAGT-TGATATATTGTGGCGTTTTTGGGA
* * ** *
117872246 AAGCGCCGCTAATGTCATTGAAGCTCATTTAAAACGATGTATTTTTGCTTAACGTTTTAGCGGC-
1 AAACGCCGCTAATGCCATTGAAGCTCATTTAAAACGATGTCGTTTTGCTTAACCTTTTAGCGGCA
* * * * *
117872310 GTTTTAGAAAAAACACCGCTAAAGTTTGATCTATTGCGGCGTTTTTGGGA
66 TTTTTACAAAAAACGCCGCTAAAG-TTGATATATTGTGGCGTTTTTGGGA
* * * * *
117872360 AAACGCCGTTACTGCCAATGAAGCTCATGTAAAACGATGTCGTTTTGCTTAACCTTTTAGCGGCG
1 AAACGCCGCTAATGCCATTGAAGCTCATTTAAAACGATGTCGTTTTGCTTAACCTTTTAGCGGCA
** * **
117872425 TTTTTA-AAAAAACGCCGCTAAAGGTTGACCTATTGCGGCGCTTTTT-TAA
66 TTTTTACAAAAAACGCCGCTAAA-GTTGATATATTGTGGCG-TTTTTGGGA
117872474 AAACGCCGCTAA
1 AAACGCCGCTAA
117872486 AGCTCGATCT
Statistics
Matches: 296, Mismatches: 52, Indels: 16
0.81 0.14 0.04
Matches are distributed among these distances:
114 136 0.46
115 101 0.34
116 59 0.20
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (114 bp):
AAACGCCGCTAATGCCATTGAAGCTCATTTAAAACGATGTCGTTTTGCTTAACCTTTTAGCGGCA
TTTTTACAAAAAACGCCGCTAAAGTTGATATATTGTGGCGTTTTTGGGA
Found at i:117872463 original size:40 final size:39
Alignment explanation
Indices: 117872419--117872530 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 39
117872409 TAACCTTTTA
* * *
117872419 GCGGCGTTTTTAAAAAAACGCCGCTAAAGGTTGACCTATT
1 GCGGCGTTTTT-TAAAAACGCCGCTAAAGCTCGACCTATT
* *
117872459 GCGGCGCTTTTTTAAAAACGCCGCTAAAGCTCGATCTTTT
1 GCGGCG-TTTTTTAAAAACGCCGCTAAAGCTCGACCTATT
*
117872499 GCGGCACTTTTTTAAAAACGCCGCTAAAGCTC
1 GCGGC-GTTTTTTAAAAACGCCGCTAAAGCTC
117872531 CATCTATTAG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
40 59 0.92
41 5 0.08
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (39 bp):
GCGGCGTTTTTTAAAAACGCCGCTAAAGCTCGACCTATT
Found at i:117875155 original size:46 final size:46
Alignment explanation
Indices: 117874947--117875263 Score: 250
Period size: 46 Copynumber: 6.7 Consensus size: 46
117874937 GGGTTAAGAT
* * *
117874947 GCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTTTCATATAGCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCT--CGAG
* * * *
117874997 GCCGATGCCATGTCCCAGACAGGTCTTACACTAACACTC--CAT--AA
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATC-TCGAG
* * * * * * * *
117875041 GCTGACGCCATGTCCCAGATAGGTCTTACGCTAGCTTGTATATCGCGAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGC-TCT-CATCTCGAG
* * * *
117875090 GCCGATACGTGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
*
117875136 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TAAATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT---CATCTCGAG
* * *
117875184 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCCCATACT-GTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTCGAG
* *
117875230 GCTGATGCATGTCCTAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
117875264 ACACATATCA
Statistics
Matches: 216, Mismatches: 39, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
44 31 0.14
45 2 0.01
46 75 0.35
47 4 0.02
48 65 0.30
49 18 0.08
50 21 0.10
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:117875237 original size:94 final size:93
Alignment explanation
Indices: 117874950--117875263 Score: 332
Period size: 94 Copynumber: 3.3 Consensus size: 93
117874940 TTAAGATGCC
* ** *
117874950 GATGCCATGTCCCAGACATAGTCTTACACTGGCTTTCATATAGCGAGGCCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTTAAATATCGCGAGGCCGATG-CATGTCCCAG
* * * *
117875015 ACAGGTCTTACACTAACACTCCATA--AGCT
64 ACATGTCTTACACTAGCTC-CCATACTTGCT
* * * * ** * *
117875044 GACGCCATGTCCCAGATAGGTCTTACGCTAGCTTGTATATCGCGAGGCCGATACGTGTCCCAGAC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAGAC
* *
117875109 ATGTCTTACACTAGCTCTCAT-CTCAATGCC
66 ATGTCTTACACTAGCTCCCATACT---TGCT
* *
117875139 GATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCGATGCATGTCCTAGAC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAGAC
117875203 ATGTCTTACACTAGCTCCCATACTGTGGCT
66 ATGTCTTACACTAGCTCCCATACT-T-GCT
*
117875233 GATG-CATGTCCTAGACATGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGTCTTACACTAGC
117875264 ACACATATCA
Statistics
Matches: 183, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
91 3 0.02
92 25 0.14
93 29 0.16
94 119 0.65
95 7 0.04
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTCCCATACTTGCT
Found at i:117887854 original size:55 final size:54
Alignment explanation
Indices: 117887718--117887861 Score: 162
Period size: 55 Copynumber: 2.6 Consensus size: 54
117887708 TATGTAGGCC
* * * * *
117887718 CACGCCCGTGTTAATTTAACAGGTTCGACCACAGGTGCTAGACACGGGTGTGTTG
1 CACGCCCGTGTTAATTTGACAGGTTCAACCAC-GGTGCAAGACACGGGCGTGTCG
* * * *
117887773 AACGCCCGTGTTAATTTGACAAGTTCAACCACGGTTTCAAGGCACGGGCGTGTCG
1 CACGCCCGTGTTAATTTGACAGGTTCAACCACGG-TGCAAGACACGGGCGTGTCG
* * *
117887828 CACGCCCGTGTTATTTTGGCAGGTTCACCCACGG
1 CACGCCCGTGTTAATTTGACAGGTTCAACCACGG
117887862 CCATGTCGCA
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 2 0.03
55 72 0.97
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (54 bp):
CACGCCCGTGTTAATTTGACAGGTTCAACCACGGTGCAAGACACGGGCGTGTCG
Found at i:117892396 original size:20 final size:20
Alignment explanation
Indices: 117892371--117892410 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
117892361 GCCGATGCAT
117892371 GTCCTAAACATGTCTTACAC
1 GTCCTAAACATGTCTTACAC
117892391 GTCCTAAACATGTCTTACAC
1 GTCCTAAACATGTCTTACAC
117892411 TAGCTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.30
Consensus pattern (20 bp):
GTCCTAAACATGTCTTACAC
Found at i:117892488 original size:114 final size:114
Alignment explanation
Indices: 117892288--117892504 Score: 292
Period size: 114 Copynumber: 1.9 Consensus size: 114
117892278 TCCCAGACAG
* ** * *
117892288 GTCTTACGCTAGCTTGTATATCGCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
1 GTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCCC
* * *
117892353 GTCTCAATGCCGATGCATGTCCTAAACATGTCTTACACGTCCTAAACAT
66 ATATCAATGCCGATGCATGTCCCAAACATGTCTTACACGTCCTAAACAT
* * *
117892402 GTCTTACACTAGCTTAAATATCTCAAGGCTGATGCATGTCCTAGACATGTCTTACACTAGCTCCC
1 GTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCCC
** *
117892467 ATAT-TGTGGCTGATGCATGTCCCAAACATGTCTTACAC
66 ATATCAAT-GCCGATGCATGTCCCAAACATGTCTTACAC
117892505 TAGCACACAT
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
113 1 0.01
114 87 0.99
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (114 bp):
GTCTTACACTAGCTTAAATATCGCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCCC
ATATCAATGCCGATGCATGTCCCAAACATGTCTTACACGTCCTAAACAT
Found at i:117892496 original size:46 final size:48
Alignment explanation
Indices: 117892391--117892508 Score: 159
Period size: 46 Copynumber: 2.5 Consensus size: 48
117892381 TGTCTTACAC
*
117892391 GTCCTAAACATGTCTTACACTAGCTTAAATATCTCAAGGCTGATGCAT
1 GTCCTAAACATGTCTTACACTAGCTCAAATATCTCAAGGCTGATGCAT
* ** **
117892439 GTCCTAGACATGTCTTACACTAGCTCCCATAT-T-GTGGCTGATGCAT
1 GTCCTAAACATGTCTTACACTAGCTCAAATATCTCAAGGCTGATGCAT
*
117892485 GTCCCAAACATGTCTTACACTAGC
1 GTCCTAAACATGTCTTACACTAGC
117892509 ACACATGTCA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 33 0.53
47 1 0.02
48 28 0.45
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (48 bp):
GTCCTAAACATGTCTTACACTAGCTCAAATATCTCAAGGCTGATGCAT
Found at i:117896133 original size:17 final size:18
Alignment explanation
Indices: 117896100--117896137 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 18
117896090 CTTTATTTTG
117896100 AAGAAGAAAGGAAAATAGA
1 AAGAAGAAA-GAAAATAGA
117896119 AAGAAGAAA-AAAATAGA
1 AAGAAGAAAGAAAATAGA
117896136 AA
1 AA
117896138 CAAAAAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.53
19 9 0.47
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (18 bp):
AAGAAGAAAGAAAATAGA
Found at i:117896145 original size:17 final size:17
Alignment explanation
Indices: 117896111--117896145 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
117896101 AGAAGAAAGG
* *
117896111 AAAATAGAAAGAAGAAA
1 AAAATAGAAACAAAAAA
117896128 AAAATAGAAACAAAAAA
1 AAAATAGAAACAAAAAA
117896145 A
1 A
117896146 CCTTTCCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.80, C:0.03, G:0.11, T:0.06
Consensus pattern (17 bp):
AAAATAGAAACAAAAAA
Found at i:117898040 original size:26 final size:26
Alignment explanation
Indices: 117898000--117898108 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
117897990 TGATACAAAT
*
117898000 TGATAAT-AGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
117898025 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
117898051 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
117898077 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
117898103 TGATAA
1 TGATAA
117898109 GAATATCATG
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 7 0.09
26 70 0.91
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:117898064 original size:52 final size:51
Alignment explanation
Indices: 117898000--117898108 Score: 209
Period size: 52 Copynumber: 2.1 Consensus size: 51
117897990 TGATACAAAT
117898000 TGATAATAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
117898051 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATA-GTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
117898103 TGATAA
1 TGATAA
117898109 GAATATCATG
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 8 0.14
52 49 0.86
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (51 bp):
TGATAATAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:117903716 original size:26 final size:26
Alignment explanation
Indices: 117903679--117903813 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
117903669 TGATACAAAT
*
117903679 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
117903705 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
117903730 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
117903756 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
117903782 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
117903808 TGATAA
1 TGATAA
117903814 GAATATCATG
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:117903734 original size:51 final size:52
Alignment explanation
Indices: 117903679--117903813 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
117903669 TGATACAAAT
117903679 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
117903730 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
117903782 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
117903814 GAATATCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 47 0.58
52 34 0.42
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:117907383 original size:137 final size:136
Alignment explanation
Indices: 117907177--117907460 Score: 534
Period size: 137 Copynumber: 2.1 Consensus size: 136
117907167 TATTGGGCCT
**
117907177 AGCCCATTCAGGTAACAGTGGTACGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAG
1 AGCCCATTTGGGTAACAGTGGTACGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAG
117907242 CCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACA
66 CCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACA
117907307 TATGCA
131 TATGCA
117907313 AGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
1 AGCCCATTTGGGTAACAGTGGTAC-GGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
117907378 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
65 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
117907443 ATATGCA
130 ATATGCA
117907450 AG-CCATTTGGG
1 AGCCCATTTGGG
117907461 GAGACTACTC
Statistics
Matches: 145, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
136 31 0.21
137 114 0.79
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (136 bp):
AGCCCATTTGGGTAACAGTGGTACGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAG
CCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACA
TATGCA
Found at i:117907419 original size:64 final size:64
Alignment explanation
Indices: 117907209--117907419 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
117907199 ACGGGCCAGA
*
117907209 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
117907273 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
117907335 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
117907346 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
117907410 GCCCATTTCA
1 GCCCATTTCA
117907420 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:117907743 original size:25 final size:27
Alignment explanation
Indices: 117907706--117907758 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
117907696 TCAAACATGC
117907706 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
117907732 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
117907758 A
1 A
117907759 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:117909281 original size:25 final size:25
Alignment explanation
Indices: 117909227--117909328 Score: 156
Period size: 25 Copynumber: 4.2 Consensus size: 25
117909217 CATGATATTC
117909227 TTATCATGAAA-A-TTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
117909250 TTATCATGAAACA-TTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
* *
117909275 TTATCATGGAACATTTACCTAACCT
1 TTATCATGAAACATTTACCTAACCA
117909300 TTATCATGAAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
117909325 TTAT
1 TTAT
117909329 GAACATACCT
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
23 11 0.15
24 9 0.12
25 44 0.61
26 8 0.11
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:117913172 original size:64 final size:64
Alignment explanation
Indices: 117913099--117913309 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
117913089 CTGGGCCAGA
*
117913099 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
117913163 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
117913225 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
117913236 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
117913300 GCCCATTTCA
1 GCCCATTTCA
117913310 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:117913311 original size:137 final size:137
Alignment explanation
Indices: 117913065--117913351 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
117913055 TATTGGGCCT
**
117913065 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
117913130 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
117913195 CATATGC
131 CATATGC
117913202 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
117913267 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
117913332 CATATGC
131 CATATGC
117913339 AAGCCCATTTGGG
1 AAGCCCATTTGGG
117913352 GAGACTACTC
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:117913635 original size:24 final size:24
Alignment explanation
Indices: 117913599--117913645 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
117913589 TCAAACATGC
117913599 ATTTAGGTCAATTTAACCCTAGGGT
1 ATTTAGGTCAATTT-ACCCTAGGGT
* *
117913624 ATTTCGGT-AATTTATCCTAGGG
1 ATTTAGGTCAATTTACCCTAGGG
117913646 GTAAAACTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 7 0.35
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
ATTTAGGTCAATTTACCCTAGGGT
Found at i:117915160 original size:26 final size:26
Alignment explanation
Indices: 117915124--117915259 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
117915114 CATGATATTC
117915124 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
117915150 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
117915176 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
117915202 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
117915228 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
117915254 TTATCA
1 TTATCA
117915260 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:117919276 original size:137 final size:137
Alignment explanation
Indices: 117919030--117919316 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
117919020 TATTGGGCCT
**
117919030 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
* *
117919095 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
117919160 CATATGC
131 CATATGC
* *
117919167 AAGCCCATTTGGGTAACAGTGGTATTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
117919232 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
117919297 CATATGC
131 CATATGC
117919304 AAGCCCATTTGGG
1 AAGCCCATTTGGG
117919317 GAGACTACTC
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTAGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATACAACATCAGTAAA
CATATGC
Found at i:117919601 original size:25 final size:27
Alignment explanation
Indices: 117919564--117919616 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
117919554 TCAAACATGC
117919564 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
117919590 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
117919616 A
1 A
117919617 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:117921135 original size:26 final size:26
Alignment explanation
Indices: 117921099--117921234 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
117921089 CATGATATTC
117921099 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
117921125 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
117921151 TTATCATGGAACATTTACCTAGCCTA
1 TTATCATGAAACATTTACCTAACCCA
117921177 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
117921203 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
117921229 TTATCA
1 TTATCA
117921235 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:117923045 original size:6 final size:6
Alignment explanation
Indices: 117923026--117923062 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
117923016 GATTCAGAGT
*
117923026 TTTGGG TTTAGG TTTGGG TTTGGG TTTGAGG TTTGGG
1 TTTGGG TTTGGG TTTGGG TTTGGG TTTG-GG TTTGGG
117923063 GTTCAAGGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.05, C:0.00, G:0.46, T:0.49
Consensus pattern (6 bp):
TTTGGG
Found at i:117923057 original size:19 final size:18
Alignment explanation
Indices: 117923026--117923062 Score: 65
Period size: 18 Copynumber: 2.0 Consensus size: 18
117923016 GATTCAGAGT
117923026 TTTGGGTTTAGGTTTGGG
1 TTTGGGTTTAGGTTTGGG
117923044 TTTGGGTTTGAGGTTTGGG
1 TTTGGGTTT-AGGTTTGGG
117923063 GTTCAAGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.05, C:0.00, G:0.46, T:0.49
Consensus pattern (18 bp):
TTTGGGTTTAGGTTTGGG
Found at i:117926521 original size:24 final size:24
Alignment explanation
Indices: 117926494--117926541 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
117926484 ACATATCTCC
117926494 TCATCTC-TATCACCACATATCAGA
1 TCATCTCATATCA-CACATATCAGA
* *
117926518 TCATGTCATATCATACATATCAGA
1 TCATCTCATATCACACATATCAGA
117926542 AGCATATGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.31
Consensus pattern (24 bp):
TCATCTCATATCACACATATCAGA
Found at i:117934047 original size:41 final size:41
Alignment explanation
Indices: 117933989--117934076 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
117933979 AAGGTTCGCG
117933989 AAAAGGGAAGGATTTGTTTCATAAATAGACCCTTTTAGGAGC
1 AAAA-GGAAGGATTTGTTTCATAAATAGACCCTTTTAGGAGC
*
117934031 AAAAGGAAGGATTTGTTTCATAAATAGACCCTTTTAGGCGC
1 AAAAGGAAGGATTTGTTTCATAAATAGACCCTTTTAGGAGC
117934072 AAAAG
1 AAAAG
117934077 CCCCCCCACC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 41 0.91
42 4 0.09
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (41 bp):
AAAAGGAAGGATTTGTTTCATAAATAGACCCTTTTAGGAGC
Found at i:117935773 original size:180 final size:176
Alignment explanation
Indices: 117935347--117936170 Score: 920
Period size: 180 Copynumber: 4.6 Consensus size: 176
117935337 ACCTTTAGGA
* * * * * * * *
117935347 AGATAAGGTTGATAGGTTAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCATCATTTTC-
1 AGATAAGGCTGGT-GGTAAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCG
* * * * * * *
117935411 -A-ATTTGCTCCACTGCAACTTCAGGGAGATAAGATCCTCAATCCTCAGTCTACTTCCTTGCTAC
65 AAGATCTG-TTC-CTGCATC-TCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTAC
* *
117935474 ATCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTACTACCTCAGAG
127 CTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
* * *
117935524 AAATGAGGCTGGTGGTAAAATTTGCTCCATTACCGATACATGGAGATAAGATTCACCATCTGCGA
1 AGATAAGGCTGGTGGTAAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCGA
* * *
117935589 AGATCTGTTCCATTGTCATCTCAGGGATATAAAATCTTCAATTCTTAGTCTGCTTCTTTGCTACC
66 AGATCTGTTCC--TG-CATCTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACC
* * * * * *
117935654 TTAGGAAAATAAAATTCATTCTTCAACCTGCTCGCTTGCTACCTCAAAG
128 TCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
* * * *
117935703 AGATAAGG-TCAGTGGCTAAAATTTACTCCATCGCCGATACATGGAGATAAGATTCACCATCTGT
1 AGATAAGGCT-GGTGG-TAAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGC
117935767 GAAGATCTGCTTCGCTGCAATCTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTA
64 GAAGATCTG-TTC-CTGC-ATCTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTA
*
117935832 CCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTTAGAG
126 CCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
* **
117935883 AGATAAGGCTTGGTGGTAAAATCTT-CTCCATTGCTGATACATGGAGATAAGATTCACTGTCTGC
1 AGATAAGGC-TGGTGGTAAAAT-TTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGC
* * * * * * * *
117935947 GAAGATCTACTCCGCTGCAACTTCAGTGAGATAAGATTTTTAATTCCCAGTCTGCTTCCTTGCTA
64 GAAGATCT-GTTC-CTGCATC-TCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTA
*
117936012 CCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCATGCTACCTCAGAG
126 CCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
* * * * * * *
117936063 AGATGAGGCTGGTGGTAAAATCTGCTTCATTTCCGATACATAGAGATAAGATTCATCATCTACGA
1 AGATAAGGCTGGTGGTAAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCGA
* * * *
117936128 ATATATGTTCCGCTGCAACTTCAGGGAGATAAGATCTTCAATT
66 AGATCTGTT-C-CTGCATC-TCAGGGAGATAAAATCTTCAATT
117936171 TTTACCTAAT
Statistics
Matches: 550, Mismatches: 79, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
176 43 0.08
177 10 0.02
178 6 0.01
179 177 0.32
180 303 0.55
181 9 0.02
182 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (176 bp):
AGATAAGGCTGGTGGTAAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCGA
AGATCTGTTCCTGCATCTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCA
GGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAG
Found at i:117936154 original size:359 final size:358
Alignment explanation
Indices: 117935365--117936170 Score: 1034
Period size: 359 Copynumber: 2.3 Consensus size: 358
117935355 TTGATAGGTT
* * * * *
117935365 AAATCTGCTCCATTGCCAATACATGGAGATAAGATTCATCATTTTC-AAT-TTGCTCCACTGCAA
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCATCATCTACGAATATTGTTCCGCTGCAA
* *
117935428 CTTCAGGGAGATAAGATCCTCAATCCTCAGTCTACTTCCTTGCTACATCAGGAAGATAAGACTCA
66 CTTCAGGGAGATAAGATCTTCAATTCTCAGTCTACTTCCTTGCTACATCAGGAAGATAAGACTCA
*
117935493 TTCTTCAACCTGCTCTCTTACTACCTCAGAGAAATGAGGCTGGTGGTAAAATTTGCTCCATTACC
131 TTCTTCAACCTGCTCTCTTACTACCTCAGAGAAATAAGGCTGGTGGTAAAATTTGCTCCATTACC
** * * *
117935558 GATACATGGAGATAAGATTCACCATCTGCGAAGATCTGTTCCATTGTCATCTCAGGGATATAAAA
196 GATACATGGAGATAAGATTCACCATCTGCGAAGATCTACTCCACTGTCAACTCAGGGAGATAAAA
** * * *
117935623 TCTTCAATTCTTAGTCTGCTTCTTTGCTACCTTAGGAAAATAAAATTCATTCTTCAACCTGCTCG
261 TCTTCAATTCCCAGTCTGCTTCCTTGCTACCTCAGGAAAATAAAACTCATTCTTCAACCTGCTCG
*
117935688 CTTGCTACCTCAAAGAGATAAGGTCAGTGGCTA
326 CATGCTACCTCAAAGAGATAAGGTCAGTGGCTA
* * * * ** *
117935721 AAATTTACTCCATCGCCGATACATGGAGATAAGATTCACCATCTGTGAAGATCTGCTT-CGCTGC
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCATCATCTACGAATAT-TG-TTCCGCTGC
* * *
117935785 AA-TCTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGAC
64 AACT-TCAGGGAGATAAGATCTTCAATTCTCAGTCTACTTCCTTGCTACATCAGGAAGATAAGAC
* * *
117935849 TCATTCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTTGGTGGTAAAATCTT-CTCCA
128 TCATTCTTCAACCTGCTCTCTTACTACCTCAGAGAAATAAGGC-TGGTGGTAAAAT-TTGCTCCA
* * ** * *
117935913 TTGCTGATACATGGAGATAAGATTCACTGTCTGCGAAGATCTACTCCGCTG-CAACTTCAGTGAG
191 TTACCGATACATGGAGATAAGATTCACCATCTGCGAAGATCTACTCCACTGTCAAC-TCAGGGAG
* * * * *
117935977 ATAAGATTTTTAATTCCCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACC
255 ATAAAATCTTCAATTCCCAGTCTGCTTCCTTGCTACCTCAGGAAAATAAAACTCATTCTTCAACC
* * * *
117936042 TGCTCTCATGCTACCTCAGAGAGATGAGG-CTGGTGG-TA
320 TGCTCGCATGCTACCTCAAAGAGATAAGGTC-AGTGGCTA
* * *
117936080 AAATCTGCTTCATTTCCGATACATAGAGATAAGATTCATCATCTACGAATATATGTTCCGCTGCA
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCATCATCTACGAATAT-TGTTCCGCTGCA
117936145 ACTTCAGGGAGATAAGATCTTCAATT
65 ACTTCAGGGAGATAAGATCTTCAATT
117936171 TTTACCTAAT
Statistics
Matches: 381, Mismatches: 58, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
356 38 0.10
357 2 0.01
358 4 0.01
359 183 0.48
360 152 0.40
361 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (358 bp):
AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCATCATCTACGAATATTGTTCCGCTGCAA
CTTCAGGGAGATAAGATCTTCAATTCTCAGTCTACTTCCTTGCTACATCAGGAAGATAAGACTCA
TTCTTCAACCTGCTCTCTTACTACCTCAGAGAAATAAGGCTGGTGGTAAAATTTGCTCCATTACC
GATACATGGAGATAAGATTCACCATCTGCGAAGATCTACTCCACTGTCAACTCAGGGAGATAAAA
TCTTCAATTCCCAGTCTGCTTCCTTGCTACCTCAGGAAAATAAAACTCATTCTTCAACCTGCTCG
CATGCTACCTCAAAGAGATAAGGTCAGTGGCTA
Found at i:117964932 original size:26 final size:27
Alignment explanation
Indices: 117964894--117964944 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
117964884 CAAGATAAGA
117964894 ATGAAAAACATTTACATT-AATTAAAT
1 ATGAAAAACATTTACATTAAATTAAAT
* *
117964920 ATGAAAGATATTTACATTAAATTAA
1 ATGAAAAACATTTACATTAAATTAA
117964945 TAAACACATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (27 bp):
ATGAAAAACATTTACATTAAATTAAAT
Found at i:117970397 original size:53 final size:53
Alignment explanation
Indices: 117970256--117970406 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
117970246 ACAAGTGTGC
* **
117970256 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
117970309 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
117970362 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
117970407 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:117977913 original size:53 final size:53
Alignment explanation
Indices: 117977772--117977922 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
117977762 ACAAGTGTGC
* **
117977772 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
117977825 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
117977878 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
117977923 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:117979538 original size:15 final size:14
Alignment explanation
Indices: 117979512--117979598 Score: 61
Period size: 15 Copynumber: 6.0 Consensus size: 14
117979502 TATTCTAATA
*
117979512 CTATTATTATTTAT
1 CTATTTTTATTTAT
117979526 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
117979541 CTATTTGTATTTCT
1 CTATTTTTATTTAT
*
117979555 ACTATTATTATATT-T
1 -CTATTTTTAT-TTAT
117979570 CTATTTATTATATT-T
1 CTATTT-TTAT-TTAT
* *
117979585 TTATTTCTATTTAT
1 CTATTTTTATTTAT
117979599 ATACTAATAT
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
13 2 0.03
14 21 0.35
15 35 0.58
16 2 0.03
ACGTcount: A:0.25, C:0.08, G:0.01, T:0.66
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:117979551 original size:14 final size:15
Alignment explanation
Indices: 117979519--117979552 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
117979509 ATACTATTAT
*
117979519 TATTTATCTAATTTT
1 TATTTATCTAATTTG
117979534 TATTTATCT-ATTTG
1 TATTTATCTAATTTG
117979548 TATTT
1 TATTT
117979553 CTACTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.68
Consensus pattern (15 bp):
TATTTATCTAATTTG
Found at i:117979583 original size:23 final size:23
Alignment explanation
Indices: 117979557--117979623 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
117979547 GTATTTCTAC
117979557 TATTATTATATTTCTATTTATTA
1 TATTATTATATTTCTATTTATTA
117979580 TATT-TT-TATTTCTATTTATATA
1 TATTATTATATTTCTATTTAT-TA
*
117979602 CTAATATTAT-TTTC-A-TTATTA
1 -TATTATTATATTTCTATTTATTA
117979623 T
1 T
117979624 TTTTCTTATA
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 8 0.21
23 8 0.21
24 6 0.15
25 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (23 bp):
TATTATTATATTTCTATTTATTA
Found at i:117979590 original size:44 final size:44
Alignment explanation
Indices: 117979510--117979596 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
117979500 ACTATTCTAA
*
117979510 TACTATTATTATTTATCTAATTTTTATTTATCTATTTGTATTTC
1 TACTATTATTATTTATCTAATTTTTATTTATCTATTTCTATTTC
*
117979554 TACTATTATTATATT-TCT-ATTTATTATATT-TTTATTTCTATTT
1 TACTATTATTAT-TTATCTAATTT-TTAT-TTATCTATTTCTATTT
117979597 ATATACTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
43 4 0.11
44 30 0.79
45 4 0.11
ACGTcount: A:0.25, C:0.08, G:0.01, T:0.66
Consensus pattern (44 bp):
TACTATTATTATTTATCTAATTTTTATTTATCTATTTCTATTTC
Found at i:117979789 original size:25 final size:24
Alignment explanation
Indices: 117979728--117979825 Score: 72
Period size: 25 Copynumber: 3.9 Consensus size: 24
117979718 TATAACGCTC
*
117979728 ATTTCAAATTTTTATACATTATTT
1 ATTTCAAATTTTTATACATTATAT
* *
117979752 ACTTT-AATATTTTCATATATTATAT
1 A-TTTCAA-ATTTTTATACATTATAT
* *
117979777 ATTTCAAATTTTTTTTTACACTATAT
1 ATTTCAAA--TTTTTATACATTATAT
** *
117979803 ATTTTGAATTGTTTATATATTAT
1 ATTTCAAATT-TTTATACATTAT
117979826 TTTTAAAGAG
Statistics
Matches: 56, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
24 9 0.16
25 29 0.52
26 18 0.32
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (24 bp):
ATTTCAAATTTTTATACATTATAT
Found at i:117983957 original size:27 final size:27
Alignment explanation
Indices: 117983927--117983980 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
117983917 TTAAATATTA
117983927 TCATGTGTGGGTTTATCTAGATTCATT
1 TCATGTGTGGGTTTATCTAGATTCATT
117983954 TCATGTGTGGGTTTATCTAGATTCATT
1 TCATGTGTGGGTTTATCTAGATTCATT
117983981 CTTATCTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.11, G:0.22, T:0.48
Consensus pattern (27 bp):
TCATGTGTGGGTTTATCTAGATTCATT
Found at i:117990460 original size:48 final size:48
Alignment explanation
Indices: 117990390--117990483 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
117990380 TATGTAAATG
*
117990390 AGTTATGTCCAAACTTGATCATAACTTTTTATAAATAAATACATTATA
1 AGTTATGCCCAAACTTGATCATAACTTTTTATAAATAAATACATTATA
* *
117990438 AGTTATGCCCATACTT-AGTCATAACTTTTTATAAATAAATATATTA
1 AGTTATGCCCAAACTTGA-TCATAACTTTTTATAAATAAATACATTA
117990484 CAACACTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
47 1 0.02
48 41 0.98
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40
Consensus pattern (48 bp):
AGTTATGCCCAAACTTGATCATAACTTTTTATAAATAAATACATTATA
Found at i:117992789 original size:25 final size:25
Alignment explanation
Indices: 117992751--117992829 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
117992741 GTCATTAGGG
117992751 TTACTGAT-TCTCAGCTTGAGAGAGC
1 TTACTGATAT-TCAGCTTGAGAGAGC
* *
117992776 TTACTGATATTCAGC-TCACATGAGC
1 TTACTGATATTCAGCTTGAGA-GAGC
* *
117992801 TTACCGTTATTCAGCTTG-GAAGAGC
1 TTACTGATATTCAGCTTGAG-AGAGC
117992826 TTAC
1 TTAC
117992830 CATTTACAGC
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
24 3 0.07
25 38 0.86
26 3 0.07
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (25 bp):
TTACTGATATTCAGCTTGAGAGAGC
Found at i:117995649 original size:26 final size:28
Alignment explanation
Indices: 117995596--117995651 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
117995586 TTTTTTTTTT
* * *
117995596 ATATTTATTATTTCTCTCATTTTAGTTC
1 ATATTGATTACTTCTCTCATTGTAGTTC
117995624 ATATTGATTACTTCTCT-ATTGT-GTTC
1 ATATTGATTACTTCTCTCATTGTAGTTC
117995650 AT
1 AT
117995652 TTTGTGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.24
27 4 0.16
28 15 0.60
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (28 bp):
ATATTGATTACTTCTCTCATTGTAGTTC
Found at i:117997487 original size:26 final size:26
Alignment explanation
Indices: 117997451--117997502 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
117997441 ACTAGTGTAG
117997451 TAGTGTTGGTTACAACTTAATTTTCT
1 TAGTGTTGGTTACAACTTAATTTTCT
117997477 TAGTGTTGGTTACAACTTAATTTTCT
1 TAGTGTTGGTTACAACTTAATTTTCT
117997503 CAGTATATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (26 bp):
TAGTGTTGGTTACAACTTAATTTTCT
Found at i:117998122 original size:15 final size:15
Alignment explanation
Indices: 117998104--117998138 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
117998094 TAAATTTGTC
*
117998104 TAAGTTAAGTTAATT
1 TAAGTTAACTTAATT
117998119 TAAGTTAACTTAATT
1 TAAGTTAACTTAATT
117998134 TAAGT
1 TAAGT
117998139 CTCGAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.46
Consensus pattern (15 bp):
TAAGTTAACTTAATT
Found at i:118001420 original size:25 final size:25
Alignment explanation
Indices: 118001392--118001482 Score: 130
Period size: 25 Copynumber: 3.6 Consensus size: 25
118001382 AATTGCCTTC
118001392 CAGTCGAACAGTCAATCGGACATTT
1 CAGTCGAACAGTCAATCGGACATTT
* * *
118001417 CAGTCGAACAGTCATTCAGACAATT
1 CAGTCGAACAGTCAATCGGACATTT
*
118001442 CAGTCGAACAGTCAATTAGG-CATTT
1 CAGTCGAACAGTCAA-TCGGACATTT
118001467 CAGTCGAACAGTCAAT
1 CAGTCGAACAGTCAAT
118001483 ATGATGCATA
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
24 1 0.02
25 55 0.95
26 2 0.03
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (25 bp):
CAGTCGAACAGTCAATCGGACATTT
Found at i:118005196 original size:58 final size:58
Alignment explanation
Indices: 118005132--118005255 Score: 153
Period size: 58 Copynumber: 2.1 Consensus size: 58
118005122 ATAGAAATGG
*
118005132 TAAAAATGGAGAAATGAGAAAT-ATTTAGAAATGATTAT-GATTTTCTCCAAAATGAAAA
1 TAAAAATGGAGAAATG-G-AATCATTTAGAAATGAATATGGATTTTCTCCAAAATGAAAA
* * * * *
118005190 TAAAAATGGAGAAATGGAATCATTTGGAAATGAATGTGGTTTTTTTCTAAAATGAAAA
1 TAAAAATGGAGAAATGGAATCATTTAGAAATGAATATGGATTTTCTCCAAAATGAAAA
*
118005248 TGAAAATG
1 TAAAAATG
118005256 ACTTGAAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 3 0.05
57 14 0.25
58 40 0.70
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.31
Consensus pattern (58 bp):
TAAAAATGGAGAAATGGAATCATTTAGAAATGAATATGGATTTTCTCCAAAATGAAAA
Found at i:118009502 original size:25 final size:26
Alignment explanation
Indices: 118009456--118009509 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
118009446 ATCAATTAAA
* *
118009456 ATTTATTATTAAATATTTAATCCAAAT
1 ATTTATTAATAAATA-TAAATCCAAAT
*
118009483 ATTTATTAATAAATA-AAATCTAAAT
1 ATTTATTAATAAATATAAATCCAAAT
118009508 AT
1 AT
118009510 ATGAATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.42
27 14 0.58
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTTATTAATAAATATAAATCCAAAT
Found at i:118010289 original size:36 final size:35
Alignment explanation
Indices: 118010249--118010343 Score: 113
Period size: 36 Copynumber: 2.7 Consensus size: 35
118010239 TGGTTGAATT
*
118010249 TTAAACATTTTAAAAATTAAAATATAGAAAAAAATA
1 TTAAA-ATTTTAAAAATTAAAAAATAGAAAAAAATA
* * *
118010285 TTAAAAATATAAGACATTAAAAAATAGAAAAAAATA
1 TTAAAATTTTAA-AAATTAAAAAATAGAAAAAAATA
118010321 -TAAAATTTCTAAAAA-TAAAAAAT
1 TTAAAATTT-TAAAAATTAAAAAAT
118010344 CACTAAAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
34 8 0.16
35 13 0.26
36 29 0.58
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.27
Consensus pattern (35 bp):
TTAAAATTTTAAAAATTAAAAAATAGAAAAAAATA
Found at i:118010349 original size:17 final size:17
Alignment explanation
Indices: 118010314--118010355 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
118010304 AAAAATAGAA
* **
118010314 AAAAATATAAAATTTCT
1 AAAAATAAAAAATCACT
118010331 AAAAATAAAAAATCACT
1 AAAAATAAAAAATCACT
118010348 -AAAATAAA
1 AAAAATAAA
118010356 GAAAATCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAATAAAAAATCACT
Found at i:118015195 original size:44 final size:45
Alignment explanation
Indices: 118015105--118015233 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
118015095 GACAGAACGA
*
118015105 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
118015151 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
118015195 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
118015234 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:118020182 original size:44 final size:45
Alignment explanation
Indices: 118020092--118020220 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
118020082 GACAGAACGA
*
118020092 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
118020138 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
118020182 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
118020221 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:118021835 original size:2 final size:2
Alignment explanation
Indices: 118021828--118021857 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
118021818 CACTCAACTC
118021828 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
118021858 TATTTTACGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:118025169 original size:58 final size:58
Alignment explanation
Indices: 118025107--118025223 Score: 198
Period size: 58 Copynumber: 2.0 Consensus size: 58
118025097 CCAAAAACGC
118025107 ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
1 ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
* * * *
118025165 ATTAAGTATAAGGCTAAAACATGTTATTTTTAGCGCTTATCTATGCATTTGAAAACAT
1 ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
118025223 A
1 A
118025224 CACCCAAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (58 bp):
ATTAAGTATAAGACTAAAACATGTTACTTTTAGCACTTATCAATGCATTTGAAAACAT
Found at i:118027668 original size:54 final size:54
Alignment explanation
Indices: 118027581--118027701 Score: 163
Period size: 54 Copynumber: 2.2 Consensus size: 54
118027571 GTATTTCAAG
* ** * *
118027581 TCAGTGAGTTATATGGCCTAACACATGGCCTAGCACACGGG-GTTGTGTGGTAAC
1 TCAGTGAGTTACATGGCCTAACACAAAGCCTAGCACACGGGTG-CGTGTGGCAAC
* *
118027635 TCAGGGAGTTACATGGCCTAGCACAAAGCCTAGCACACGGGTGCGTGTGGCAAC
1 TCAGTGAGTTACATGGCCTAACACAAAGCCTAGCACACGGGTGCGTGTGGCAAC
118027689 TCAGTGAGTTACA
1 TCAGTGAGTTACA
118027702 CAGGTGAGGG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 57 0.98
55 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (54 bp):
TCAGTGAGTTACATGGCCTAACACAAAGCCTAGCACACGGGTGCGTGTGGCAAC
Found at i:118029664 original size:2 final size:2
Alignment explanation
Indices: 118029657--118029700 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
118029647 TTAACATTGG
118029657 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
118029699 AT
1 AT
118029701 GAATGAAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:118030344 original size:31 final size:29
Alignment explanation
Indices: 118030306--118030384 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 29
118030296 GGGATAAGCC
118030306 CACGGGCGTGTGAGTCCAC-ATGGTCCACCTA
1 CACGGGCGTGT--GTCC-CTATGGTCCACCTA
*
118030337 CACGGGCGTGTTTCCCTTTATGGTCCACCTA
1 CACGGGCGTGTGTCCC--TATGGTCCACCTA
*
118030368 CACGGGCGTGTTTCCCT
1 CACGGGCGTGTGTCCCT
118030385 TTATGTTAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
28 1 0.02
29 4 0.09
31 39 0.89
ACGTcount: A:0.14, C:0.33, G:0.27, T:0.27
Consensus pattern (29 bp):
CACGGGCGTGTGTCCCTATGGTCCACCTA
Found at i:118030385 original size:31 final size:31
Alignment explanation
Indices: 118030325--118030389 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
118030315 GTGAGTCCAC
118030325 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
1 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
118030356 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
1 ATGGTCCACCTACACGGGCGTGTTTCCCTTT
118030387 ATG
1 ATG
118030390 TTAAGGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.14, C:0.31, G:0.23, T:0.32
Consensus pattern (31 bp):
ATGGTCCACCTACACGGGCGTGTTTCCCTTT
Found at i:118040298 original size:24 final size:24
Alignment explanation
Indices: 118040238--118040305 Score: 102
Period size: 23 Copynumber: 2.9 Consensus size: 24
118040228 TTCTAGTTAC
*
118040238 ATGGCTCTTTGTGAGCTTCCTGAT
1 ATGGCTCTTTGTGAGCTTCCCGAT
118040262 A-GGCTCTTTGTGAGCTTCCCGAT
1 ATGGCTCTTTGTGAGCTTCCCGAT
* *
118040285 ATGGTTCTTTGTGAACTTCCC
1 ATGGCTCTTTGTGAGCTTCCC
118040306 AATTATGACT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 22 0.55
24 18 0.45
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.40
Consensus pattern (24 bp):
ATGGCTCTTTGTGAGCTTCCCGAT
Found at i:118040318 original size:25 final size:24
Alignment explanation
Indices: 118040242--118040318 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 24
118040232 AGTTACATGG
* ** *
118040242 CTCTTTGTGAGCTTCCTGATA-GG
1 CTCTTTGTGAACTTCCCAATATGA
* * *
118040265 CTCTTTGTGAGCTTCCCGATATGG
1 CTCTTTGTGAACTTCCCAATATGA
*
118040289 TTCTTTGTGAACTTCCCAATTATGA
1 CTCTTTGTGAACTTCCCAA-TATGA
118040314 CTCTT
1 CTCTT
118040319 ATGAGTTTCC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 20 0.43
24 18 0.39
25 8 0.17
ACGTcount: A:0.16, C:0.23, G:0.19, T:0.42
Consensus pattern (24 bp):
CTCTTTGTGAACTTCCCAATATGA
Found at i:118047971 original size:46 final size:46
Alignment explanation
Indices: 118047918--118048326 Score: 426
Period size: 46 Copynumber: 8.9 Consensus size: 46
118047908 TTTCTGAAAC
* * *
118047918 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGGAACATGATAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * ** * *
118047964 TAAATGTGTAAGAAAATGGTTGAAAGACACCATGGCAACATGATAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * * * *
118048010 GAAATGTGTAAGACCATGGTTGAAAGATGCCATGGAAACAGGATAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * *
118048056 AAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
** * *
118048102 GAAAAAAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC-G
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * * ** *
118048147 GGAATGAATAAGACCACGGTTGAAAGATACCATGGCAATGTAACAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
** * ** * *
118048193 GAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAATGTAACGT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
** *
118048239 GAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACA-
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
* * * *
118048284 GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 G-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
118048327 TCAAAGATAA
Statistics
Matches: 311, Mismatches: 50, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
45 38 0.12
46 273 0.88
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAT
Found at i:118049391 original size:210 final size:211
Alignment explanation
Indices: 118049026--118049445 Score: 673
Period size: 210 Copynumber: 2.0 Consensus size: 211
118049016 TTATCTATCG
* * *
118049026 ATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACTTGTGACCGCATAATAGCCGCAGAC
1 ATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACCTGTGACCACATAACAGCCGCAGAC
*
118049091 TGGGACCTTTACATACACTTCAACTCGTGACTGTATAAAGCACCATCACCCAGAAACCTGACTTC
66 TGGGACCTTTACATACACTTCAACTCGTGACCGTATAAAGCACCATCACCCAGAAACCTGACTTC
* *
118049156 TATAGGATGAGTTTCTAAGGTAATGGACTCATCTCGACATGACATATGAAA-TGTGTGTCTCCGA
131 CATAGGATGAGTTTCTAAGGTAATGGACTCATCCCGACATGACATATGAAAGTGTGTGTCTCCGA
118049220 GCGTTATCGCATCCCA
196 GCGTTATCGCATCCCA
* *
118049236 ATAGTGTCGCAAACACCCCCTCGTCATTGTTTTATCCAACCTGTGACCACATAACAGCCGCCA-A
1 ATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACCTGTGACCACATAACAGCCG-CAGA
* * *
118049300 CTGGGACTTTTACATACACTTCAACTCGTGACCGTATAAAGCACTATCACCCAGGAACCTGACTT
65 CTGGGACCTTTACATACACTTCAACTCGTGACCGTATAAAGCACCATCACCCAGAAACCTGACTT
* * *
118049365 CCATAGGATGAGTTTCTAATGTAATGGTCTCATCCCGACATGACATATGAAATGTGTGTGTCTTC
130 CCATAGGATGAGTTTCTAAGGTAATGGACTCATCCCGACATGACATATGAAA-GTGTGTGTCTCC
*
118049430 GAGCGTTATTGCATCC
194 GAGCGTTATCGCATCC
118049446 TCGACAACTC
Statistics
Matches: 192, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
210 165 0.86
211 2 0.01
212 25 0.13
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (211 bp):
ATAGTGTCGCAAACACCCCCGCGTCATTGCTTTATCCAACCTGTGACCACATAACAGCCGCAGAC
TGGGACCTTTACATACACTTCAACTCGTGACCGTATAAAGCACCATCACCCAGAAACCTGACTTC
CATAGGATGAGTTTCTAAGGTAATGGACTCATCCCGACATGACATATGAAAGTGTGTGTCTCCGA
GCGTTATCGCATCCCA
Found at i:118049600 original size:17 final size:18
Alignment explanation
Indices: 118049565--118049602 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
118049555 ACAAAATCCT
**
118049565 AAAAACCCTAAACTTAAA
1 AAAAACCCTAAACGAAAA
118049583 AAAAACCCTAAA-GAAAA
1 AAAAACCCTAAACGAAAA
118049600 AAA
1 AAA
118049603 CGAATAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.68, C:0.18, G:0.03, T:0.11
Consensus pattern (18 bp):
AAAAACCCTAAACGAAAA
Found at i:118059961 original size:46 final size:46
Alignment explanation
Indices: 118059894--118060064 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
118059884 AACCCGCCCC
*
118059894 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
118059940 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
118059988 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
118060032 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
118060065 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
44 3 0.03
45 28 0.27
46 32 0.30
47 28 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:118060057 original size:92 final size:93
Alignment explanation
Indices: 118059899--118060068 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
118059889 GCCCCTAAGT
* *
118059899 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
118059964 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
118059992 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
118060056 CGAGTTCGGATGC
66 CGAGTTCGGATGC
118060069 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:118062491 original size:15 final size:15
Alignment explanation
Indices: 118062467--118062514 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
118062457 AGGAAACCGA
118062467 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
118062482 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
118062496 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
118062512 ATA
1 ATA
118062515 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:118065572 original size:93 final size:93
Alignment explanation
Indices: 118065465--118065635 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
118065455 GCCCCTAAGT
* *
118065465 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
118065530 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
118065558 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
118065623 CGAGTTCGGATGC
66 CGAGTTCGGATGC
118065636 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:118065632 original size:46 final size:46
Alignment explanation
Indices: 118065460--118065632 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
118065450 AACCCGCCCC
* * *
118065460 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
118065506 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
118065554 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
118065599 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
118065633 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:118071150 original size:46 final size:46
Alignment explanation
Indices: 118071085--118071196 Score: 152
Period size: 46 Copynumber: 2.4 Consensus size: 46
118071075 TTATCTTCGA
* * * * * *
118071085 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGT
*
118071131 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGT
*
118071177 CATGTTGTCATGGTATCTTT
1 CATGTTGCCATGGTATCTTT
118071197 TGTAATATCC
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCCGT
Found at i:118080037 original size:45 final size:47
Alignment explanation
Indices: 118079987--118080122 Score: 138
Period size: 45 Copynumber: 3.0 Consensus size: 47
118079977 ATGGTTGAGC
* *
118079987 ATCCGAACTCGTTGAG-TGAGTCTGAGTTCACTTATGGATGCGAATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGG
* * * * * * *
118080033 -TCCGAACGCGTTTGAGTTGAGTCCAAGTTC-GTGAATGTA-AC-TAGG
1 ATCCGAACTCG-TTGAGTTGAGTCCGAGTTCACT-TATGGATGCGAAGG
118080078 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
118080123 CGCCCGAGCT
Statistics
Matches: 67, Mismatches: 16, Indels: 13
0.70 0.17 0.14
Matches are distributed among these distances:
45 33 0.49
46 18 0.27
47 16 0.24
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (47 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGG
Found at i:118092324 original size:46 final size:47
Alignment explanation
Indices: 118092239--118092357 Score: 170
Period size: 46 Copynumber: 2.6 Consensus size: 47
118092229 GGGGCGTTAC
* *** *
118092239 ATCTTTCAACTATGGTCTTTTTC-TTTTCATGTCACGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTTCATATCACGTTGCCATGGT
*
118092285 ATCTTTCAACCATGGTCTTACACATTTT-ATATCATGTTGCCATGGT
1 ATCTTTCAACCATGGTCTTACACATTTTCATATCACGTTGCCATGGT
118092331 ATCTTTCAACCATGGTCTTACACATTT
1 ATCTTTCAACCATGGTCTTACACATTT
118092358 CATTTCAGAA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 62 0.94
47 4 0.06
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.44
Consensus pattern (47 bp):
ATCTTTCAACCATGGTCTTACACATTTTCATATCACGTTGCCATGGT
Found at i:118094426 original size:11 final size:11
Alignment explanation
Indices: 118094410--118094461 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
118094400 CTTTCTTTAT
118094410 ATAATAATAAA
1 ATAATAATAAA
118094421 ATAATAATAAA
1 ATAATAATAAA
* *
118094432 ATATCTTATTAAA
1 ATA--ATAATAAA
*
118094445 ATATTAATAAA
1 ATAATAATAAA
118094456 ATAATA
1 ATAATA
118094462 TTTATCTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
11 26 0.74
13 9 0.26
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
ATAATAATAAA
Found at i:118095561 original size:141 final size:141
Alignment explanation
Indices: 118095302--118095585 Score: 514
Period size: 141 Copynumber: 2.0 Consensus size: 141
118095292 ATAAAATCAT
118095302 CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
1 CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
* *
118095367 GTAACTTTCAAAATTACCCATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTGAA
66 GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
118095432 AGTCTCAAAAA
131 AGTCTCAAAAA
* * * *
118095443 CACATAACAAAATTAGAGCTTCAATTCCATTTTAATTCATCATAAATATACAGCACTCATTAATG
1 CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
118095508 GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
66 GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
118095573 AGTCTCAAAAA
131 AGTCTCAAAAA
118095584 CA
1 CA
118095586 TAAAAATTCC
Statistics
Matches: 137, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 137 1.00
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.28
Consensus pattern (141 bp):
CACACAACAAAATTAGAGCTTCAATTACATGTTAATTCATCATAAATATACAGCACCCATTAATG
GTAACTTTCAAAATTACACATGAAATCAAAAACAAATGAAACATATAGTTGGACTTAGTTGTAAA
AGTCTCAAAAA
Found at i:118096536 original size:12 final size:12
Alignment explanation
Indices: 118096519--118096543 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
118096509 CAATCGATAC
118096519 TTAGCTTATAGT
1 TTAGCTTATAGT
118096531 TTAGCTTATAGT
1 TTAGCTTATAGT
118096543 T
1 T
118096544 GATAAGGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TTAGCTTATAGT
Found at i:118110397 original size:15 final size:15
Alignment explanation
Indices: 118110377--118110406 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
118110367 TCATCATCTC
118110377 CTTAGTGTTTAAATT
1 CTTAGTGTTTAAATT
118110392 CTTAGTGTTTAAATT
1 CTTAGTGTTTAAATT
118110407 TAAGTAGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.13, T:0.53
Consensus pattern (15 bp):
CTTAGTGTTTAAATT
Found at i:118111823 original size:25 final size:24
Alignment explanation
Indices: 118111780--118111828 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
118111770 CTTGTTTTAA
118111780 TATTTATTTTTATATTTTTAAATG
1 TATTTATTTTTATATTTTTAAATG
*
118111804 TATTTGATTTATTATATTTTAAAAT
1 TATTT-ATTT-TTATATTTTTAAAT
118111829 TTTTTTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 4 0.18
26 13 0.59
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
TATTTATTTTTATATTTTTAAATG
Found at i:118118549 original size:42 final size:42
Alignment explanation
Indices: 118118502--118118694 Score: 155
Period size: 43 Copynumber: 4.5 Consensus size: 42
118118492 CGATGCCTCA
* * *
118118502 GTCCCAGACAGGGTCTTACATGAAATCAGATACGATGTCGAT
1 GTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGAT
* * *
118118544 GTCCCAAACATGGTCTTATACGTAAATCTCA-AT-CGAGGCCTG-T
1 GTCCCAGACATGGTCTTACACG-AAA--TCAGATACGATGCC-GAT
* * *
118118587 GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGAT
1 GTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGAT
* * *
118118629 GTCCCAGACATGGTCTTATACGTAAACCTCA-AT-TGAGGCCTG-T
1 GTCCCAGACATGGTCTTACACG-AAA--TCAGATACGATGCC-GAT
*
118118672 GTCCCAGACACGGTCTTACACGA
1 GTCCCAGACATGGTCTTACACGA
118118695 TGTCTCAGAT
Statistics
Matches: 120, Mismatches: 20, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
40 2 0.02
41 3 0.03
42 48 0.40
43 56 0.47
44 6 0.05
45 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGAT
Found at i:118118591 original size:43 final size:42
Alignment explanation
Indices: 118118543--118118689 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 42
118118533 ACGATGTCGA
* *
118118543 TGTCCCAAACATGGTCTTATACGTAAATCTCAATCGAGGCCTG
1 TGTCCCAGACACGGTCTTATACGTAAA-CTCAATCGAGGCCTG
* * **
118118586 TGTCCCAGACACGGTCTTACACG-AAA-ACAGATACGATACC-G
1 TGTCCCAGACACGGTCTTATACGTAAACTCA-AT-CGAGGCCTG
* *
118118627 ATGTCCCAGACATGGTCTTATACGTAAACCTCAATTGAGGCCTG
1 -TGTCCCAGACACGGTCTTATACGTAAA-CTCAATCGAGGCCTG
118118671 TGTCCCAGACACGGTCTTA
1 TGTCCCAGACACGGTCTTA
118118690 CACGATGTCT
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
40 2 0.02
41 3 0.04
42 29 0.35
43 45 0.54
44 3 0.04
45 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTATACGTAAACTCAATCGAGGCCTG
Found at i:118118602 original size:85 final size:85
Alignment explanation
Indices: 118118502--118118694 Score: 314
Period size: 85 Copynumber: 2.3 Consensus size: 85
118118492 CGATGCCTCA
* * * **
118118502 GTCCCAGACAGGGTCTTACATGAAATCAGATACGATGTCGATGTCCCAAACATGGTCTTATACGT
1 GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGATGTCCCAAACATGGTCTTATACGT
*
118118567 AAATCTCAATCGAGGCCTGT
66 AAACCTCAATCGAGGCCTGT
*
118118587 GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGATGTCCCAGACATGGTCTTATACGT
1 GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGATGTCCCAAACATGGTCTTATACGT
*
118118652 AAACCTCAATTGAGGCCTGT
66 AAACCTCAATCGAGGCCTGT
118118672 GTCCCAGACACGGTCTTACACGA
1 GTCCCAGACACGGTCTTACACGA
118118695 TGTCTCAGAT
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 100 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (85 bp):
GTCCCAGACACGGTCTTACACGAAAACAGATACGATACCGATGTCCCAAACATGGTCTTATACGT
AAACCTCAATCGAGGCCTGT
Found at i:118119485 original size:6 final size:6
Alignment explanation
Indices: 118119474--118119499 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
118119464 GCTTTCTCCA
118119474 TTTTCT TTTTCT TTTTCT TTTTCT TT
1 TTTTCT TTTTCT TTTTCT TTTTCT TT
118119500 GATTTTCAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:118123347 original size:2 final size:2
Alignment explanation
Indices: 118123340--118123377 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
118123330 ATAATAATAC
* *
118123340 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
118123378 ATAGAAATAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:118124639 original size:12 final size:13
Alignment explanation
Indices: 118124624--118124676 Score: 53
Period size: 12 Copynumber: 4.5 Consensus size: 13
118124614 AATAGGGGTG
118124624 ATAATAATA-ATA
1 ATAATAATACATA
118124636 ATAATAATACA-A
1 ATAATAATACATA
*
118124648 AAAATAATACAT-
1 ATAATAATACATA
*
118124660 AT-AT-ATATATA
1 ATAATAATACATA
118124671 ATAATA
1 ATAATA
118124677 GTAGTCAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
10 5 0.15
11 4 0.12
12 23 0.70
13 1 0.03
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAATAATACATA
Found at i:118124764 original size:3 final size:3
Alignment explanation
Indices: 118124751--118124830 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
118124741 GAGGGCATAT
118124751 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
118124795 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
118124831 AAAAATAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:118124775 original size:12 final size:12
Alignment explanation
Indices: 118124751--118124831 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
118124741 GAGGGCATAT
118124751 ATAATAT-AATA
1 ATAATATAAATA
118124762 ATAATATAAATA
1 ATAATATAAATA
*
118124774 ATAATATATACATG
1 ATAATATA-A-ATA
*
118124788 AGAA-AT-AATA
1 ATAATATAAATA
118124798 ATAATATAAATA
1 ATAATATAAATA
* *
118124810 ATAGTAAAAATA
1 ATAATATAAATA
*
118124822 ATAAAATAAA
1 ATAATATAAA
118124832 AAAATAAAAC
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 10 0.18
12 33 0.59
13 3 0.05
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:118124777 original size:18 final size:18
Alignment explanation
Indices: 118124747--118124826 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
118124737 TGGAGAGGGC
118124747 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
118124765 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
* *
118124784 CAT-GAGA-AATAATAATA
1 -ATATAAATAATAATAATA
* *
118124801 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
118124819 ATAATAAA
1 AT-ATAAA
118124827 ATAAAAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 2 0.04
17 8 0.16
18 28 0.56
19 10 0.20
20 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:118125282 original size:22 final size:22
Alignment explanation
Indices: 118125250--118125316 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
118125240 GATGATTTAG
* *
118125250 TGGAGTAGTTTAGTGGGGTGGT
1 TGGAGTGGTTTAGTAGGGTGGT
*
118125272 TGGGGTGGTTTAGTAGGGTGGT
1 TGGAGTGGTTTAGTAGGGTGGT
*
118125294 TGGAGTGGTTTAGTAGAGTGGT
1 TGGAGTGGTTTAGTAGGGTGGT
118125316 T
1 T
118125317 TAGTGGGGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.13, C:0.00, G:0.49, T:0.37
Consensus pattern (22 bp):
TGGAGTGGTTTAGTAGGGTGGT
Found at i:118125292 original size:13 final size:13
Alignment explanation
Indices: 118125274--118125329 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 13
118125264 GGGGTGGTTG
118125274 GGGTGGTTTAGTA
1 GGGTGGTTTAGTA
118125287 GGGTGG-TT-G--
1 GGGTGGTTTAGTA
*
118125296 GAGTGGTTTAGTA
1 GGGTGGTTTAGTA
* *
118125309 GAGTGGTTTAGTG
1 GGGTGGTTTAGTA
118125322 GGGTGGTT
1 GGGTGGTT
118125330 GGAGTGAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
9 5 0.14
10 2 0.06
11 2 0.06
12 2 0.06
13 25 0.69
ACGTcount: A:0.12, C:0.00, G:0.50, T:0.38
Consensus pattern (13 bp):
GGGTGGTTTAGTA
Found at i:118125443 original size:15 final size:16
Alignment explanation
Indices: 118125425--118125454 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
118125415 AGTTTTGGGC
118125425 TGTTGGG-TTTTTAGA
1 TGTTGGGCTTTTTAGA
118125440 TGTTGGGCTTTTTAG
1 TGTTGGGCTTTTTAG
118125455 CCCGGACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.10, C:0.03, G:0.33, T:0.53
Consensus pattern (16 bp):
TGTTGGGCTTTTTAGA
Found at i:118125741 original size:44 final size:45
Alignment explanation
Indices: 118125647--118125741 Score: 147
Period size: 44 Copynumber: 2.1 Consensus size: 45
118125637 CGATATTTGC
* *
118125647 TATCTTTGATCTGCTCTCTGTCTAATACAGAGACGCCAAATATGT
1 TATCTTTGATATGCTCTCTGTCTAATACAGAGACGCCAAATACGT
* *
118125692 CATCTTTGATATGCTCTCTGT-TAATACAGAGACGCCAAATCCGT
1 TATCTTTGATATGCTCTCTGTCTAATACAGAGACGCCAAATACGT
118125736 TATCTT
1 TATCTT
118125742 CGATCTGTTC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 26 0.58
45 19 0.42
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (45 bp):
TATCTTTGATATGCTCTCTGTCTAATACAGAGACGCCAAATACGT
Found at i:118127013 original size:176 final size:176
Alignment explanation
Indices: 118125736--118127221 Score: 1025
Period size: 176 Copynumber: 8.4 Consensus size: 176
118125726 CCAAATCCGT
* * *
118125736 TATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTATTTTCAACTTGTTCCCTAT
1 TATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTAT
* * ** * * * * **
118125801 AAACACAAGGATGCC--ATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCAC-AGGAATATCA-
66 AAGCACAGGGATGCCAAAT-CTGCTATTTTCAACT-TG-TTCCCTATAAGCACAAGG-ATGCCAT
** * *
118125861 GATCTGCTATCTTCGATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGT
127 G--CTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
* ** *
118125913 TATCTTCGATCTGTTCCTTATAAGCACAGGGATACCAAATCTGCTATTTTCAACTTGTTCCCTAT
1 TATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTAT
** * * * * * * *
118125978 AAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCTGCTTCACTGTAATCA-TAGGAATGTCA-
66 AAGCACAGGGATGCCAAAT-CTGCTATTTTCAACT-TG-TTCCCTATAAGCACAAGG-ATGCCAT
** * * * * * *
118126038 GATCTGCTATCTTCGATCTGTTTC-CTATAAGCACAGGGATGCCAAATCTAC
127 G--CTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
* * * * * * ** * *
118126089 TGTTTTC-AACTTATTCCCTATAAGCATAGGGATG-C-CATGCTGAAATCTTCGA-TCTGCTTCA
1 TATCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CTGCTATCTTCAACT-TG-TTCC
* * * * * * * *
118126150 CTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGA-TCTGTTCCCTATAAGCACAGGGATGCCA
62 CTATAAGCACAGGGATGCCAAATCTGCTATTTTCAACT-TGTTCCCTATAAGCACAAGGATGCC-
** * * * * * * *
118126214 AAT-CTGCTATTTTC-AACTTG-TTCCCTATAAGCACAGGGATG-C-CATGCTGA
125 -ATGCTGAAATCTTCGATC-TGCTTCACTGTAAGCACAGGAATGTCAGAT-CTGC
* * * *** * *
118126264 AATCTTCGATCTGCTTCACTGTAAGCACAAAAATGTCAGATATGCTATCTTCAA-TCTGTTCCCT
1 TATCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACT-TGTTCCCT
* * * *
118126328 ATAAACACAGGGATGCCAAATCTGCGATCTTCAACTTGTTCCCTATAAGCACAAGGATACCATGC
64 ATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGC
* *
118126393 TGAAATCTTCAATATGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
129 TGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
* * * *
118126441 TATCTTCGATCTGTTCCCTATAAGCACAGGGGTGCCAAATCTGCTGTTTTCAACTTGTTCCCTAT
1 TATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTAT
* ** * * * * *
118126506 AAGCATAGGGATGCC--ATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCAC-AGGAATGTCA-
66 AAGCACAGGGATGCCAAAT-CTGCTATTTTCAACT-TG-TTCCCTATAAGCACAAGG-ATGCCAT
** * * * * * *
118126566 GATCTGCTATCTTCGATCT-ATTCCCTATAAGCACAGGGATGCCAAATCTGC
127 G--CTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
* * ** ** *
118126617 TATCTTC-AACTTGTTCCCTATAAGCACAGGGATG-C-CATGCTGAAATCTTTGA-TCTGCTTCA
1 TATCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CTGCTATCTTCAACT-TG-TTCC
* * * * * * *
118126678 CTGTAAGCACAGGAATGTCAGATCTGCT-TTCTTCGATTTGTTCCCTATAAGCACAGGGATGCCA
62 CTATAAGCACAGGGATGCCAAATCTGCTATT-TTCAACTTGTTCCCTATAAGCACAAGGATGCC-
*** * * * * * * * *
118126742 AAT-CTGCTGTTTTC-AACTTG-TTCCCTATAAGCATAGGGATG-C-CATGCTGA
125 -ATGCTGAAATCTTCGATC-TGCTTCACTGTAAGCACAGGAATGTCAGAT-CTGC
* * * * * *
118126792 AATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCTGTTCCCT
1 TATCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACT-TGTTCCCT
* *
118126856 ATAAGCACAGGGATGCCAAATCTCCTATTTTTAACTTGTTCCCTATAAGCACAAGGATGCCATGC
64 ATAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGC
*
118126921 TGAAATCTTCGATCTGCTTCACTGTAAGTACAGGAATGTCAGATCTGC
129 TGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
** * *
118126969 TATCTTCGATCTGTTCCCTATAAGCATGGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTAT
1 TATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTAT
* *
118127034 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG
**
118127099 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTAT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
* * * *
118127145 TATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTAT
1 TATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTAT
*
118127210 AAGCACAAGGAT
66 AAGCACAGGGAT
118127222 ACCATACTGA
Statistics
Matches: 1061, Mismatches: 191, Indels: 115
0.78 0.14 0.08
Matches are distributed among these distances:
174 17 0.02
175 88 0.08
176 693 0.65
177 248 0.23
178 15 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (176 bp):
TATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG
AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGC
Found at i:118127086 original size:132 final size:132
Alignment explanation
Indices: 118125869--118127049 Score: 1993
Period size: 132 Copynumber: 8.9 Consensus size: 132
118125859 CAGATCTGCT
* * *
118125869 ATCTTCGATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCTTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
*
118125934 AAGCACAGGGATACCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
118125999 AA
131 AA
* * *
118126001 ATCTTCGATCTGCTTCACTGTAATCATAGGAATGTCAGATCTGCTATCTTCGATCTGTTTCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * * *
118126066 AAGCACAGGGATGCCAAATCTACTGTTTTCAACTTATTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
118126131 AA
131 AA
*
118126133 ATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
118126198 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
118126263 AA
131 AA
** * *
118126265 ATCTTCGATCTGCTTCACTGTAAGCACAAAAATGTCAGATATGCTATCTTCAATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * * * *
118126330 AAACACAGGGATGCCAAATCTGCGATCTTCAACTTGTTCCCTATAAGCACAAGGATACCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
118126395 AA
131 AA
* *
118126397 ATCTTCAATATGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * *
118126462 AAGCACAGGGGTGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
118126527 AA
131 AA
*
118126529 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTATTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
*
118126594 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
118126659 AA
131 AA
* * *
118126661 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTTTCTTCGATTTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
118126726 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
118126791 AA
131 AA
118126793 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * *
118126858 AAGCACAGGGATGCCAAATCTCCTATTTTTAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
118126923 AA
131 AA
*
118126925 ATCTTCGATCTGCTTCACTGTAAGTACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
** * *
118126990 AAGCATGGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
66 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
118127050 AATCTGCTGT
Statistics
Matches: 978, Mismatches: 71, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 978 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AA
Found at i:118127127 original size:396 final size:395
Alignment explanation
Indices: 118125882--118127181 Score: 1912
Period size: 396 Copynumber: 3.3 Consensus size: 395
118125872 TTCGATCTGT
* * *
118125882 TTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCTTATAAGCACAGGGATA
1 TTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATG
*
118125947 CCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCT
65 CCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCT
* * *
118126012 GCTTCACTGTAATCATAGGAATGTCAGATCTGCTATCTTCGATCTGTTTCCTATAAGCACAGGGA
130 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGA
*
118126077 TGCCAAATCTACTGTTTTCAACTTATTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGAT
195 TGCCAAATCTACTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGAT
*
118126142 CTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGG
260 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGG
* *
118126207 GATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCG
325 GATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATTTTCA
118126272 A-TCTGC
390 ACT-TGC
** * * *
118126278 TTCACTGTAAGCACAAAAATGTCAGATATGCTATCTTCAATCTGTTCCCTATAAACACAGGGATG
1 TTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATG
* * * * *
118126343 CCAAATCTGC-GATCTTCAACTTGTTCCCTATAAGCACAAGGATACCATGCTGAAATCTTCAATA
65 CCAAATCTGCTG-TTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
118126407 TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGG
129 TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGG
* *
118126472 GTGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGA
194 ATGCCAAATCTACTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGA
*
118126537 TCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTATTCCCTATAAGCACAG
259 TCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAG
*
118126602 GGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTT
324 GGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAAT-TTT
* *
118126667 GATC-TGC
388 CAACTTGC
* *
118126674 TTCACTGTAAGCACAGGAATGTCAGATCTGCTTTCTTCGATTTGTTCCCTATAAGCACAGGGATG
1 TTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATG
*
118126739 CCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATCT
65 CCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCT
118126804 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGA
130 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGA
* * * * *
118126869 TGCCAAATCTCCTATTTTTAACTTGTTCCCTATAAGCACAAGGATGCCATGCTGAAATCTTCGAT
195 TGCCAAATCTACTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGAT
* **
118126934 CTGCTTCACTGTAAGTACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCATGGG
260 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGG
* * ***
118126999 GATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTGTTTT
325 GATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATTTT
118127063 CAACTTG-
388 CAACTTGC
* * * * ** * * *
118127070 TTCCCTATAAGCACAGGGATGCCATG-CTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAAT
1 TTCACTGTAAGCACAGGAATGTCA-GACTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* * ** * * * *
118127134 GTCAGATCTATTATCTTCGA-TCTATTCCCTATAAGCACAGGGATGCCA
64 GCCAAATCTGCTGTTTTCAACT-TGTTCCCTATAAGCACAGGGATGCCA
118127182 AATCTGCTGT
Statistics
Matches: 816, Mismatches: 78, Indels: 20
0.89 0.09 0.02
Matches are distributed among these distances:
395 14 0.02
396 790 0.97
397 10 0.01
398 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (395 bp):
TTCACTGTAAGCACAGGAATGTCAGACTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGC
CAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTG
CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
GCCAAATCTACTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATC
TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGG
ATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATTTTCAA
CTTGC
Found at i:118127162 original size:132 final size:132
Alignment explanation
Indices: 118127026--118127320 Score: 527
Period size: 132 Copynumber: 2.2 Consensus size: 132
118127016 TTTCAACTTG
* *
118127026 TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATG
1 TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAAGGATA
* *
118127091 CCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTATTATCTTCGATC
66 CCATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATC
118127156 TA
131 TA
118127158 TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAAGGATA
1 TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAAGGATA
*
118127223 CCATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTTGATC
66 CCATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATC
*
118127288 TG
131 TA
*
118127290 TTCCCTATAAACACAGGGATGCCAAATCTGC
1 TTCCCTATAAGCACAGGGATGCCAAATCTGC
118127321 AATCTTCGAT
Statistics
Matches: 156, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 156 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (132 bp):
TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAAGGATA
CCATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATC
TA
Found at i:118127164 original size:264 final size:263
Alignment explanation
Indices: 118125869--118127181 Score: 1961
Period size: 264 Copynumber: 5.0 Consensus size: 263
118125859 CAGATCTGCT
* * *
118125869 ATCTTCGATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCTTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
118125934 AAGCACAGGGATACCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
* * *
118125999 AAATCTTCGATCTGCTTCACTGTAATCATAGGAATGTCAGATCTGCTATCTTCGATCTGTTTCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCT
* * * *
118126064 ATAAGCACAGGGATGCCAAATCTACTGTTTTCAACTTATTCCCTATAAGCATAGGGATGCCATGC
195 ATAAGCACAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
118126129 TGAA
260 TGAA
*
118126133 ATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
*
118126198 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
** * *
118126263 AAATCTTCGATCTGCTTCACTGTAAGCACAAAAATGTCAGATATGCTATCTTCAATCTGTTCCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCT
* * * * *
118126328 ATAAACACAGGGATGCCAAATCTGCGATCTTCAACTTGTTCCCTATAAGCACAAGGATACCATGC
195 ATAAGCACAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
118126393 TGAA
260 TGAA
* *
118126397 ATCTTCAATATGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
118126462 AAGCACAGGGGTGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
*
118126527 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTATTCCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCT
*
118126592 ATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
195 ATAAGCACAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
118126657 TGAA
260 TGAA
* * *
118126661 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTTTCTTCGATTTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
*
118126726 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
118126791 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCT
* * * *
118126856 ATAAGCACAGGGATGCCAAATCTCCTATTTTTAACTTGTTCCCTATAAGCACAAGGATGCCATGC
195 ATAAGCACAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGC
118126921 TGAA
260 TGAA
*
118126925 ATCTTCGATCTGCTTCACTGTAAGTACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
** *
118126990 AAGCATGGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-C
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGC
*** * * * * * * **
118127054 TGCTGTTTTC-AACTTG-TTCCCTATAAGCACAGGGATGCCATG-CTGAAATCTTCGATCTGCTT
129 TGAAATCTTCGATC-TGCTTCACTGTAAGCACAGGAATGTCA-GACTGCTATCTTCGATCTG-TT
* * * * * * * *
118127116 CACTGTAAGCACAGGAATGTCAGATCTATTATCTTCGA-TCTATTCCCTATAAGCACAGGGATGC
191 CCCTATAAGCACAGGGATGCCAAATCTACTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGC
118127180 CA
255 CA
118127182 AATCTGCTGT
Statistics
Matches: 965, Mismatches: 78, Indels: 12
0.91 0.07 0.01
Matches are distributed among these distances:
263 16 0.02
264 937 0.97
265 10 0.01
266 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (263 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGACTGCTATCTTCGATCTGTTCCCTA
TAAGCACAGGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
GAA
Found at i:118127215 original size:396 final size:395
Alignment explanation
Indices: 118125882--118127335 Score: 1899
Period size: 396 Copynumber: 3.7 Consensus size: 395
118125872 TTCGATCTGT
* * *
118125882 TTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCTTATAAGCACAGGGATA
1 TTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATG
* * *
118125947 CCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCT
65 CCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCAATAT
* * *
118126012 GCTTCACTGTAATCATAGGAATGTCAGATCTGCTATCTTCGATCTGTTTCCTATAAGCACAGGGA
130 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGA
* * *
118126077 TGCCAAATCTACTGTTTTCAACTTATTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGAT
195 TGCCAAATCTACTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGAT
*
118126142 CTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGG
260 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGG
* *
118126207 GATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCG
325 GATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATTTTCA
118126272 A-TCTGC
390 ACT-TGC
** * * *
118126278 TTCACTGTAAGCACAAAAATGTCAGATATGCTATCTTCAATCTGTTCCCTATAAACACAGGGATG
1 TTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATG
* * *
118126343 CCAAATCTGCGATCTTCAACTTGTTCCCTATAAGCACAAGGATACCATGCTGAAATCTTCAATAT
65 CCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCAATAT
*
118126408 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGG
130 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGA
* * *
118126473 TGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGAT
195 TGCCAAATCTACTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGAT
*
118126538 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTATTCCCTATAAGCACAGG
260 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGG
* *
118126603 GATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTG
325 GATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAAT-TTTC
*
118126668 ATC-TGC
389 AACTTGC
* *
118126674 TTCACTGTAAGCACAGGAATGTCAGATCTGCTTTCTTCGATTTGTTCCCTATAAGCACAGGGATG
1 TTCACTGTAAGCACAGGAATGTCAGA-CTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATG
* * * * *
118126739 CCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATCT
65 CCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCAATAT
118126804 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGA
130 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGA
* * *
118126869 TGCCAAATCTCCTATTTTTAACTTGTTCCCTATAAGCACAAGGATGCCATGCTGAAATCTTCGAT
195 TGCCAAATCTACTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGAT
* **
118126934 CTGCTTCACTGTAAGTACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCATGGG
260 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGG
* * ***
118126999 GATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTGTTTT
325 GATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATTTT
118127063 CAACTTG-
388 CAACTTGC
* * * * ** * * *
118127070 TTCCCTATAAGCACAGGGATGCCATG-CTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAAT
1 TTCACTGTAAGCACAGGAATGTCA-GACTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGAT
* * ** * * *** *
118127134 GTCAGATCTATTATCTTCGA-TCTATTCCCTATAAGCACAGGGATGCCAAAT-CTGCTGTTTTCA
64 GCCAAATCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCA
* * ** * ** * *
118127197 ACT-TG-TTCCCTATAAGCACAAGG-ATACCATA-CTGAAATCTTCGATCTGCTTCACTGTAAGC
126 A-TATGCTTCACTGTAAGCAC-AGGAATGTCAGATCTGCTATCTTCGATCTG-TTCCCTATAAGC
* * * * * * *
118127258 ACAGGAATGTCAGATCTACTATCTTTGATC-TGTTCCCTATAAACACAGGGATGCCAAAT-CTGC
188 ACAGGGATGCCAAATCTACTAT-TTTCAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGA
118127321 AATCTTCGATCTGCT
250 AATCTTCGATCTGCT
118127336 CTCCGCCGCT
Statistics
Matches: 939, Mismatches: 103, Indels: 31
0.88 0.10 0.03
Matches are distributed among these distances:
395 29 0.03
396 858 0.91
397 45 0.05
398 7 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (395 bp):
TTCACTGTAAGCACAGGAATGTCAGACTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGC
CAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCAATATG
CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
GCCAAATCTACTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATC
TGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGG
ATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATTTTCAA
CTTGC
Found at i:118127360 original size:308 final size:307
Alignment explanation
Indices: 118125869--118127327 Score: 1050
Period size: 308 Copynumber: 4.7 Consensus size: 307
118125859 CAGATCTGCT
* ** * *
118125869 ATCTTCGATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCTTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTATTCCCTAT
* * * * *
118125934 AAGCACAGGGATACCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTCCTATTTTCAACTTGTTCCCTATAAGCACAAGGATACCATACTG
* * * *
118125999 AAATCTTCGATCTGCTTCACTGTAATCATAGGAATGTCAGATCTGCTATCTTCGATCTGTTTCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTGTTCCCT
* * ** * ** * * * *
118126064 ATAAGCACAGGGATGCCAAATCTACTGTTTTCAACTTATTCCCTATAAGCATAGGGATGCC--AT
196 ATAAACACAGGGATGCCAAATCTGCAATCTTCAACTTGCTCCC-AGAAGCACAGAGACGCCAAAT
*** * * * * * * * **
118126127 GCTGAAATCTTCGA-TCTGCTTCACTGTAAGCACAAGAATGTCA-GATCTGCT
260 -CTGCTGTTTTCAACT-TG-TTCCCTATAAGCACAGGGATGCCATG--CTGAA
* * * * * * * * *
118126178 ATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTC-AACTTGTTCCCTA
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATC-TATTCCCTA
*** * * * * ** * *
118126241 TAAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCACAAAAATGTCAG
65 TAAGCACAGGGATGCCAAAT-CTCCTATTTTCAACT-TG-TTCCCTATAAGCACAAGGAT-AC-C
** * * * * * * * * * *
118126303 ATA-TGCTATCTTCAATCTG-TTCCCTATAAACACAGGGATGCCAAATCTGCGATCTTC-AACTT
125 ATACTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATC-T
* * * * * *
118126365 GTTCCCTATAAGCACAAGGATACC--ATGCTGAAATCTTCAA-TATGCTTCACTGTAAGCACAG-
189 GTTCCCTATAAACACAGGGATGCCAAAT-CTGCAATCTTCAACT-TGC-TCCCAG-AAGCACAGA
* * * * * * * **
118126426 GAATGTCAGATCTGCTATCTTCGA-TCTGTTCCCTATAAGCACAGGGGTGCCAAAT-CTGCT
250 G-ACGCCAAATCTGCTGTTTTCAACT-TGTTCCCTATAAGCACAGGGATGCC--ATGCTGAA
* * * * * * * * * * *
118126486 GTTTTC-AACTTG-TTCCCTATAAGCATAGGGATG-C-CATGCTGA-AATCTTCGATCTGCTTCA
1 ATCTTCGATC-TGCTTCACTGTAAGCACAGGAATGTCAGAT-CT-ACTATCTTCGATCT-ATTCC
* * * * * * * * * *
118126546 CTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCTATTCCCTATAAGCACAGGGATGCCA
62 CTATAAGCACAGGGATGCCAAATCTCCTATTTTCAACT-TGTTCCCTATAAGCACAAGGATACCA
* ** * * * * * * *
118126610 AATCTGCTATCTTC-AACTTG-TTCCCTATAAGCACAGGGATG-C-CATGCTGA-AATCTTTGAT
126 TA-CTGAAATCTTCGATC-TGCTTCACTGTAAGCACAGGAATGTCAGAT-CT-ACTATCTTCGAT
* * * * * * ** * * * * *
118126670 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTTTCTTCGATTTGTTCCCTATAAGCACAGG
187 CTG-TTCCCTATAAACACAGGGATGCCAAATCTGCAATCTTCAACTTGCTCCC-AGAAGCACAGA
* *
118126735 GATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAA
250 GACGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
* *
118126793 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTATTCCCTAT
* * *
118126858 AAGCACAGGGATGCCAAATCTCCTATTTTTAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTCCTATTTTCAACTTGTTCCCTATAAGCACAAGGATACCATACTG
* *
118126923 AAATCTTCGATCTGCTTCACTGTAAGTACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTGTTCCCT
* ** * ** * * * * *
118126988 ATAAGCATGGGGATGTCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCAAAT
196 ATAAACACAGGGATGCCAAATCTGCAATCTTCAACTTGCTCCC-AGAAGCACAGAGACGCCAAAT
118127053 CTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
260 CTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
*
118127101 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTATTATCTTCGATCTATTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTATTCCCTAT
* *
118127166 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAAGGATACCATACTG
66 AAGCACAGGGATGCCAAATCTCCTATTTTCAACTTGTTCCCTATAAGCACAAGGATACCATACTG
*
118127231 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTTGATCTGTTCCCT
131 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTGTTCCCT
118127296 ATAAACACAGGGATGCCAAATCTGCAATCTTC
196 ATAAACACAGGGATGCCAAATCTGCAATCTTC
118127328 GATCTGCTCT
Statistics
Matches: 925, Mismatches: 176, Indels: 99
0.77 0.15 0.08
Matches are distributed among these distances:
306 14 0.02
307 69 0.07
308 731 0.79
309 97 0.10
310 14 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (307 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTATTCCCTAT
AAGCACAGGGATGCCAAATCTCCTATTTTCAACTTGTTCCCTATAAGCACAAGGATACCATACTG
AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCGATCTGTTCCCT
ATAAACACAGGGATGCCAAATCTGCAATCTTCAACTTGCTCCCAGAAGCACAGAGACGCCAAATC
TGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
Found at i:118127706 original size:205 final size:205
Alignment explanation
Indices: 118127348--118127833 Score: 774
Period size: 205 Copynumber: 2.4 Consensus size: 205
118127338 CCGCCGCTAT
* * * * *
118127348 AGAGACGCCAAATTATCTTGGATTTGCTTCAACGTAAACACGTAAAAGCGAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
* * *
118127413 TCGATTTGCTCCTTGTAAGCACAAGGATGGCAAACCATCTTGGATCTGCTTCAGTATAAACATTT
66 TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
118127478 GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCAAAGTGGAGATGCCAGACTTCAATTTGTTCT
131 GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCAAAGTGGAGATGCCAGACTTCAATTTGTTCT
118127543 CTAACAATAC
196 CTAACAATAC
* *
118127553 AGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
*
118127618 TCGATTTGCTCCTTGTAAGCACAATGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
66 TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
* * * * * **
118127683 GAAGGTTGGATCTGCTATGTGTCTGCCTTCCGTCGAAGTGGAGATGCTAGACTTTGATTTGTTCT
131 GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCAAAGTGGAGATGCCAGACTTCAATTTGTTCT
*
118127748 CTGACAATAC
196 CTAACAATAC
* *
118127758 AGAAATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCATCTATGTCT
1 AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
*
118127823 TCGATCTGCTC
66 TCGATTTGCTC
118127834 TCCGCCTGAT
Statistics
Matches: 257, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
205 257 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (205 bp):
AGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATGTCT
TCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCT
GAAGGTTGGATCTGCTATGTGTCTACCCTCCATCAAAGTGGAGATGCCAGACTTCAATTTGTTCT
CTAACAATAC
Found at i:118128102 original size:61 final size:65
Alignment explanation
Indices: 118127982--118128102 Score: 178
Period size: 61 Copynumber: 1.9 Consensus size: 65
118127972 GTATCCATGC
*
118127982 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATACT
1 TTATGCCAAATAATTAGGACGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATACT
* * *
118128047 TTATGTCAAATAATTAGGACG-T-T-A-TGAACTGAATCAAATGCTCCTAACTAGATGTG
1 TTATGCCAAATAATTAGGACGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
118128103 TTATTGTAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
61 30 0.58
62 1 0.02
63 1 0.02
64 1 0.02
65 19 0.37
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (65 bp):
TTATGCCAAATAATTAGGACGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATACT
Found at i:118129236 original size:20 final size:21
Alignment explanation
Indices: 118129213--118129264 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
118129203 TTTTTTTCGC
118129213 TTTTTTTTAGAATTTTTTGT-
1 TTTTTTTTAGAATTTTTTGTG
* *
118129233 TTTTTGTTT-TATTTTTTTGTG
1 TTTTT-TTTAGAATTTTTTGTG
118129254 TGTTTTTTTAG
1 T-TTTTTTTAG
118129265 GGCTCTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
20 14 0.56
21 7 0.28
22 4 0.16
ACGTcount: A:0.10, C:0.00, G:0.13, T:0.77
Consensus pattern (21 bp):
TTTTTTTTAGAATTTTTTGTG
Found at i:118132536 original size:19 final size:19
Alignment explanation
Indices: 118132494--118132540 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
118132484 AGTGAAAGTT
*
118132494 TAATGCAAATGCTGCAATG
1 TAATGCAAATGATGCAATG
*
118132513 TAATGCAAATGTATGGAATG
1 TAATGCAAATG-ATGCAATG
118132533 -AATGCAAA
1 TAATGCAAA
118132541 AAAAGGAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.26
Consensus pattern (19 bp):
TAATGCAAATGATGCAATG
Found at i:118135320 original size:3 final size:3
Alignment explanation
Indices: 118135307--118135394 Score: 55
Period size: 3 Copynumber: 29.3 Consensus size: 3
118135297 GAGGGCATAT
118135307 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
*
118135351 ATA ATA ATA AT- ATAA ATA ATA GA-A AAA ATA ATA A-A ATA A-A ATA
1 ATA ATA ATA ATA AT-A ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
118135394 A
1 A
118135395 AAAATAAAAC
Statistics
Matches: 70, Mismatches: 3, Indels: 24
0.72 0.03 0.25
Matches are distributed among these distances:
2 12 0.17
3 46 0.66
4 10 0.14
5 2 0.03
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:118135331 original size:12 final size:12
Alignment explanation
Indices: 118135307--118135390 Score: 68
Period size: 12 Copynumber: 6.8 Consensus size: 12
118135297 GAGGGCATAT
118135307 ATAATAT-AATA
1 ATAATATAAATA
118135318 ATAATATAAATA
1 ATAATATAAATA
118135330 ATAATATATACATGA
1 ATAATATA-A-AT-A
118135345 GA-AATA-ATAATA
1 -ATAATATA-AATA
118135357 ATAATATAAATA
1 ATAATATAAATA
*
118135369 ATAGA-AAAAATA
1 ATA-ATATAAATA
*
118135381 ATAAAATAAA
1 ATAATATAAA
118135391 ATAAAAAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 17
0.77 0.02 0.21
Matches are distributed among these distances:
11 9 0.15
12 37 0.60
13 5 0.08
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.29
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:118135333 original size:18 final size:18
Alignment explanation
Indices: 118135303--118135371 Score: 86
Period size: 18 Copynumber: 3.7 Consensus size: 18
118135293 TGGAGAGGGC
118135303 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
118135321 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
*
118135340 CATGAGAAATAATAATAATA
1 -AT-ATAAATAATAATAATA
118135360 ATATAAATAATA
1 ATATAAATAATA
118135372 GAAAAAATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
17 3 0.07
18 20 0.44
19 5 0.11
20 5 0.11
21 12 0.27
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Done.