Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 387 of 425
Found at i:118960872 original size:20 final size:21
Alignment explanation
Indices: 118960847--118960893 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
118960837 GACTTAAAAT
* *
118960847 AAATAACATATAACA-ATTTA
1 AAATAACATATAAAAGATCTA
118960867 AAATAACATATAAAAGATCTA
1 AAATAACATATAAAAGATCTA
118960888 AAATAA
1 AAATAA
118960894 ATAATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.26
Consensus pattern (21 bp):
AAATAACATATAAAAGATCTA
Found at i:118960922 original size:24 final size:25
Alignment explanation
Indices: 118960867--118960934 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
118960857 TAACAATTTA
* * *
118960867 AAATAACATATAAAAGATCTAAAAT
1 AAATAATATAAAAAATATCTAAAAT
*
118960892 AAATAATATAAAAAATAT-TAAAGT
1 AAATAATATAAAAAATATCTAAAAT
118960916 AAATAATATACATAAAATA
1 AAATAATATA-A-AAAATA
118960935 AAAATATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 15 0.41
25 16 0.43
26 6 0.16
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.26
Consensus pattern (25 bp):
AAATAATATAAAAAATATCTAAAAT
Found at i:118960970 original size:19 final size:19
Alignment explanation
Indices: 118960890--118960980 Score: 77
Period size: 19 Copynumber: 4.9 Consensus size: 19
118960880 AAGATCTAAA
* *
118960890 ATAAATAATATAAAAAATAT
1 ATAAATAA-ATAATATATAT
*
118960910 -TAAAGTAAATAATATACAT
1 ATAAA-TAAATAATATATAT
118960929 A-AAATAAA-AATAT-T-T
1 ATAAATAAATAATATATAT
118960944 -TAATATAAATAATATATAT
1 ATAA-ATAAATAATATATAT
*
118960963 ATAAATAAATAATGTATA
1 ATAAATAAATAATATATA
118960981 AAGAGTTTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
15 3 0.05
16 5 0.09
17 10 0.17
18 5 0.09
19 29 0.50
20 6 0.10
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (19 bp):
ATAAATAAATAATATATAT
Found at i:118961479 original size:2 final size:2
Alignment explanation
Indices: 118961472--118961529 Score: 73
Period size: 2 Copynumber: 29.5 Consensus size: 2
118961462 ACGAAAATAC
* *
118961472 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AG AT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
118961513 AT AT GT AT CT AT AT AT A
1 AT AT AT AT AT AT AT AT A
118961530 AAAATAATAG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
1 1 0.02
2 46 0.98
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:118963913 original size:3 final size:3
Alignment explanation
Indices: 118963905--118963938 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
118963895 TTCTTTCCCC
118963905 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
118963939 GCTACAACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:118965849 original size:26 final size:24
Alignment explanation
Indices: 118965816--118965863 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
118965806 AATTAACCAA
118965816 ATTATATTATCTAAATATGTAATTTT
1 ATTATATTATCTAAA-AT-TAATTTT
*
118965842 ATTATATTATTTAAAATTAATT
1 ATTATATTATCTAAAATTAATT
118965864 AATATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 2 0.10
26 14 0.67
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTATATTATCTAAAATTAATTTT
Found at i:118967202 original size:18 final size:18
Alignment explanation
Indices: 118967179--118967213 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
118967169 AATGTTTAAA
118967179 ATTTTATT-TTCTATTATT
1 ATTTTATTATT-TATTATT
118967197 ATTTTATTATTTATTAT
1 ATTTTATTATTTATTAT
118967214 ATTCCTACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTATTATTTATTATT
Found at i:118972779 original size:30 final size:28
Alignment explanation
Indices: 118972745--118972813 Score: 66
Period size: 30 Copynumber: 2.4 Consensus size: 28
118972735 GGCACTCACA
*
118972745 TTTTATAAATAAATAAAAATTATTTTTCTT
1 TTTTATAAATAAATAAAAA--ATTTTTATT
* * **
118972775 TTTTAAAAAAAAATTTAAAATTTTTATT
1 TTTTATAAATAAATAAAAAATTTTTATT
118972803 TTTTATCAAAT
1 TTTTAT-AAAT
118972814 CACTTCATAA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 13 0.42
29 3 0.10
30 15 0.48
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (28 bp):
TTTTATAAATAAATAAAAAATTTTTATT
Found at i:118972949 original size:9 final size:9
Alignment explanation
Indices: 118972925--118972960 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
118972915 GAAAAAAATA
118972925 TAAAAATATT
1 TAAAAAT-TT
*
118972935 TTAAAATTT
1 TAAAAATTT
118972944 TAAAAATTT
1 TAAAAATTT
118972953 TAAAAATT
1 TAAAAATT
118972961 ATTTTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 18 0.75
10 6 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TAAAAATTT
Found at i:118972958 original size:29 final size:27
Alignment explanation
Indices: 118972926--118972990 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 27
118972916 AAAAAAATAT
118972926 AAAAATATTTTAAAATTTTAAAAATTTTA
1 AAAAATATTTTAAAA-TTT-AAAATTTTA
* * *
118972955 AAAATTATTTTTTATAATTTATAATTTTA
1 AAAA--ATATTTTAAAATTTAAAATTTTA
118972984 AAAAATA
1 AAAAATA
118972991 ATTAATTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
27 2 0.07
29 16 0.53
30 3 0.10
31 9 0.30
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (27 bp):
AAAAATATTTTAAAATTTAAAATTTTA
Found at i:118973774 original size:2 final size:2
Alignment explanation
Indices: 118973767--118973805 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
118973757 CTGCATACAG
118973767 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
118973806 TTAAAAAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:118975346 original size:10 final size:10
Alignment explanation
Indices: 118975329--118975362 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
118975319 TTTAAAAATT
118975329 AAAA-AAAAA
1 AAAAGAAAAA
*
118975338 AAAAGAAAAG
1 AAAAGAAAAA
118975348 AAAAGAAAAA
1 AAAAGAAAAA
118975358 AAAAG
1 AAAAG
118975363 TCAACAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:118975371 original size:20 final size:20
Alignment explanation
Indices: 118975329--118975372 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
118975319 TTTAAAAATT
*
118975329 AAAA-AAAAAAAAAGAAAAG
1 AAAAGAAAAAAAAAGAAAAC
**
118975348 AAAAGAAAAAAAAAGTCAAC
1 AAAAGAAAAAAAAAGAAAAC
118975368 AAAAG
1 AAAAG
118975373 GATATGAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.82, C:0.05, G:0.11, T:0.02
Consensus pattern (20 bp):
AAAAGAAAAAAAAAGAAAAC
Found at i:118977920 original size:11 final size:11
Alignment explanation
Indices: 118977904--118977932 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
118977894 GATGAATATC
118977904 ACCAACTTGTA
1 ACCAACTTGTA
118977915 ACCAACTTGTA
1 ACCAACTTGTA
118977926 ACCAACT
1 ACCAACT
118977933 ACTAATGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.31, G:0.07, T:0.24
Consensus pattern (11 bp):
ACCAACTTGTA
Found at i:118979997 original size:6 final size:6
Alignment explanation
Indices: 118979954--118979995 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
118979944 CATCAGGGAT
* * *
118979954 GGGAGG GGGAGG GGGAGG GGGAGA GGGAGG AGGAGG TGGAGG
1 GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG
118979996 TGAGGAGATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.21, C:0.00, G:0.76, T:0.02
Consensus pattern (6 bp):
GGGAGG
Found at i:118982835 original size:18 final size:18
Alignment explanation
Indices: 118982814--118982867 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
118982804 AACCCATGAT
118982814 AGTTTTCAAATCACTAAC
1 AGTTTTCAAATCACTAAC
*
118982832 AGTTTT--AAT---T-AT
1 AGTTTTCAAATCACTAAC
118982844 AGTTTTCAAATCACTAAC
1 AGTTTTCAAATCACTAAC
118982862 AGTTTT
1 AGTTTT
118982868 AATTTTTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 7 0.25
13 1 0.04
14 3 0.11
16 3 0.11
17 1 0.04
18 13 0.46
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.43
Consensus pattern (18 bp):
AGTTTTCAAATCACTAAC
Found at i:118982846 original size:30 final size:30
Alignment explanation
Indices: 118982812--118982871 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
118982802 CAAACCCATG
118982812 ATAGTTTTCAAATCACTAACAGTTTTAATT
1 ATAGTTTTCAAATCACTAACAGTTTTAATT
118982842 ATAGTTTTCAAATCACTAACAGTTTTAATT
1 ATAGTTTTCAAATCACTAACAGTTTTAATT
118982872 TTTGGTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (30 bp):
ATAGTTTTCAAATCACTAACAGTTTTAATT
Found at i:118983116 original size:19 final size:19
Alignment explanation
Indices: 118983094--118983132 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
118983084 CAAAATAAAG
118983094 TAGGAAATGAAAAAAATAT
1 TAGGAAATGAAAAAAATAT
118983113 TAGGAAATGAAAAAAATAT
1 TAGGAAATGAAAAAAATAT
118983132 T
1 T
118983133 CACTGCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (19 bp):
TAGGAAATGAAAAAAATAT
Found at i:118984839 original size:28 final size:28
Alignment explanation
Indices: 118984808--118984864 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
118984798 AAATAAACAA
118984808 AGAGATAAAACAGTACTGAAATATACTT
1 AGAGATAAAACAGTACTGAAATATACTT
118984836 AGAGATAAAACAGTACTGAAATATACTT
1 AGAGATAAAACAGTACTGAAATATACTT
118984864 A
1 A
118984865 CATTATCAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.51, C:0.11, G:0.14, T:0.25
Consensus pattern (28 bp):
AGAGATAAAACAGTACTGAAATATACTT
Found at i:118993079 original size:13 final size:13
Alignment explanation
Indices: 118993063--118993095 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
118993053 TTTAATTAAA
*
118993063 TTAGTTAATTAGT
1 TTAGATAATTAGT
118993076 TTAGATAATTAGT
1 TTAGATAATTAGT
118993089 TTA-ATAA
1 TTAGATAA
118993096 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:118998467 original size:11 final size:10
Alignment explanation
Indices: 118998453--118998522 Score: 58
Period size: 11 Copynumber: 6.9 Consensus size: 10
118998443 TCCTATCTTT
118998453 TTTTATTCTTA
1 TTTTATT-TTA
118998464 TTTTA--TTA
1 TTTTATTTTA
118998472 TTTTATTTTA
1 TTTTATTTTA
118998482 TTTTTATTTTTA
1 -TTTTA-TTTTA
*
118998494 TTTTCATTTCAA
1 TTTT-ATTT-TA
118998506 TTTTA--TTA
1 TTTTATTTTA
118998514 TTTTATTTT
1 TTTTATTTT
118998523 GAAAGACATA
Statistics
Matches: 49, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
8 14 0.29
9 1 0.02
10 5 0.10
11 18 0.37
12 11 0.22
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTATTTTA
Found at i:118998477 original size:5 final size:5
Alignment explanation
Indices: 118998453--118998522 Score: 58
Period size: 5 Copynumber: 13.8 Consensus size: 5
118998443 TCCTATCTTT
118998453 TTTTA TTCTTA TTTTA --TTA TTTTA TTTTA TTTTTA TTTTTA TTTTCA
1 TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTT-A
*
118998500 TTTCAA TTTTA --TTA TTTTA TTTT
1 TTT-TA TTTTA TTTTA TTTTA TTTT
118998523 GAAAGACATA
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
3 6 0.11
5 25 0.45
6 24 0.44
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:118998488 original size:6 final size:6
Alignment explanation
Indices: 118998452--118998502 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
118998442 CTCCTATCTT
* *
118998452 TTTTTA TTCTTA -TTTTA TTATTT- TATTTTA TTTTTA TTTTTA TTTTCA
1 TTTTTA TTTTTA TTTTTA TT-TTTA T-TTTTA TTTTTA TTTTTA TTTTTA
118998500 TTT
1 TTT
118998503 CAATTTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 4 0.11
6 29 0.76
7 5 0.13
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:119001323 original size:13 final size:13
Alignment explanation
Indices: 119001307--119001339 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
119001297 TTTAATTAAA
*
119001307 TTAGTTAATTAGT
1 TTAGATAATTAGT
119001320 TTAGATAATTAGT
1 TTAGATAATTAGT
119001333 TTA-ATAA
1 TTAGATAA
119001340 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:119003322 original size:16 final size:16
Alignment explanation
Indices: 119003301--119003334 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
119003291 TGTAATCACA
119003301 TCTCAGTAACCTAATG
1 TCTCAGTAACCTAATG
119003317 TCTCAGTAACCTAATG
1 TCTCAGTAACCTAATG
119003333 TC
1 TC
119003335 ATGACATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (16 bp):
TCTCAGTAACCTAATG
Found at i:119011510 original size:45 final size:45
Alignment explanation
Indices: 119011406--119011539 Score: 153
Period size: 45 Copynumber: 3.0 Consensus size: 45
119011396 GCTATATGCC
* * * * **
119011406 AGAAATTAGTAAGACCATAGTTTGAAATATGCTATGACATCACAAT
1 AGAAATGAGTAAGACCATAG-TTGAAAGATGTTATGGCATCATGAT
* *
119011452 A-AAGATGACTAAGATCATAGTTGAAAGATGTTATGGCATCATGAT
1 AGAA-ATGAGTAAGACCATAGTTGAAAGATGTTATGGCATCATGAT
* *
119011497 AGAAATGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATG
1 AGAAATGAGTAAGACCATAGTTGAAAGATGTTATGGCATCATG
119011540 TAAAAGTACA
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
45 58 0.78
46 16 0.22
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (45 bp):
AGAAATGAGTAAGACCATAGTTGAAAGATGTTATGGCATCATGAT
Found at i:119013006 original size:23 final size:25
Alignment explanation
Indices: 119012975--119013022 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
119012965 ACAAAGTCCA
*
119012975 TACATAATA-CCACAAAGG-TAACT
1 TACAAAATACCCACAAAGGCTAACT
119012998 TACAAAATACGCCACAAAGGCTAAC
1 TACAAAATAC-CCACAAAGGCTAAC
119013023 AGAATGCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.38
25 9 0.43
26 4 0.19
ACGTcount: A:0.48, C:0.25, G:0.10, T:0.17
Consensus pattern (25 bp):
TACAAAATACCCACAAAGGCTAACT
Found at i:119013042 original size:66 final size:67
Alignment explanation
Indices: 119012936--119013095 Score: 148
Period size: 66 Copynumber: 2.4 Consensus size: 67
119012926 GCAACATACG
* ** * * * **
119012936 AAATACGCCACAAATGCTATTAGAGTG-CCACAAAGTCCATA-CATAATACCACAAAGGTAACTT
1 AAATACGCCACAAAGGCTAACAGAATGCCCACAAAGTCCATATCAGAATACCACAAAGGCAAAAT
119012999 ACA
66 -CA
* *
119013002 AAATACGCCACAAAGGCTAACAGAATGCACCA-AAAG-CCATATCAGAATGCCATAAAGGCAAAA
1 AAATACGCCACAAAGGCTAACAGAATGC-CCACAAAGTCCATATCAGAATACCACAAAGGCAAAA
119013065 TCA
65 TCA
* * * *
119013068 GATTACACTACAAAGGCTAACAGAATGC
1 AAATACGCCACAAAGGCTAACAGAATGC
119013096 TACTCAGGCA
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
66 54 0.70
67 20 0.26
68 3 0.04
ACGTcount: A:0.46, C:0.24, G:0.14, T:0.16
Consensus pattern (67 bp):
AAATACGCCACAAAGGCTAACAGAATGCCCACAAAGTCCATATCAGAATACCACAAAGGCAAAAT
CA
Found at i:119025417 original size:21 final size:22
Alignment explanation
Indices: 119025385--119025438 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
119025375 CTACATTATT
*
119025385 TATATATTTTT-AATTTAGTCTC
1 TATAT-TTTTTAAATTTAATCTC
*
119025407 TTTATTTTTTAAAATTTAATCTC
1 TATATTTTTT-AAATTTAATCTC
119025430 TATATTTTT
1 TATATTTTT
119025439 CGGATTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.19
22 4 0.15
23 18 0.67
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (22 bp):
TATATTTTTTAAATTTAATCTC
Found at i:119027159 original size:19 final size:18
Alignment explanation
Indices: 119027124--119027163 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
119027114 AAAAATACAA
* *
119027124 AAAAATAATTTTTTAATAT
1 AAAAATAATTATATAAT-T
119027143 AAAAATAATTATATAATT
1 AAAAATAATTATATAATT
119027161 AAA
1 AAA
119027164 CATTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAAATAATTATATAATT
Found at i:119028269 original size:31 final size:31
Alignment explanation
Indices: 119028231--119028309 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
119028221 TTTAACGGTT
119028231 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
119028262 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
119028293 ACTGGGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
119028310 ACTGTAAATG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:119028554 original size:24 final size:25
Alignment explanation
Indices: 119028517--119028575 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
119028507 CTGGAGGTCT
119028517 AGCCTCTTTTAAT-AACTGGGGCA-A
1 AGCC-CTTTTAATAAACTGGGGCATA
119028541 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTGGGGCATA
119028567 AGCCCTTTT
1 AGCCCTTTT
119028576 GCACTTCCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 5 0.16
24 7 0.22
25 10 0.31
26 10 0.31
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCATA
Found at i:119028648 original size:20 final size:20
Alignment explanation
Indices: 119028623--119028691 Score: 104
Period size: 20 Copynumber: 3.5 Consensus size: 20
119028613 ATTTATGAAT
119028623 ATATCATGTGCATTTCATAC
1 ATATCATGTGCATTTCATAC
*
119028643 ATATCATGTGCATTTTATAC
1 ATATCATGTGCATTTCATAC
*
119028663 ATATCATGTGCATATCATATC
1 ATATCATGTGCATTTCATA-C
119028684 A-ATCATGT
1 ATATCATGT
119028692 ATATCATATC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (20 bp):
ATATCATGTGCATTTCATAC
Found at i:119029545 original size:27 final size:27
Alignment explanation
Indices: 119029515--119029682 Score: 106
Period size: 27 Copynumber: 6.1 Consensus size: 27
119029505 GTAAATCTAC
*
119029515 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
119029542 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* *
119029570 AAAGTCAAGGGTATTTCTA-TAATTTTGT
1 AAA-CCAAGGGTATTTC-AGTAATTTTAT
* * ** *
119029598 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
119029625 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* ** *
119029652 AAACCAATGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
119029679 AAAC
1 AAAC
119029683 TAGGGGTGTT
Statistics
Matches: 114, Mismatches: 23, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
27 83 0.73
28 15 0.13
29 16 0.14
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:119029694 original size:27 final size:27
Alignment explanation
Indices: 119029603--119029701 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
119029593 TTTGTAAATC
119029603 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * *
119029629 TGAGGGTATTTCGGTAATTTCACAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACT
**
119029657 AATGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
*
119029684 AGGGGTGTTTTGGTAATT
1 AGGGGTATTTTGGTAATT
119029702 CTACCCTATA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.02
27 57 0.98
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:119029763 original size:27 final size:27
Alignment explanation
Indices: 119029733--119029876 Score: 184
Period size: 27 Copynumber: 5.3 Consensus size: 27
119029723 GTAATTTCAC
*
119029733 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
119029760 AATCAAGGGTAAAACAGTAA-TTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
119029786 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
119029813 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
119029840 AATCGAGGGTAAAACGGTAATTTT-TA
1 AATCGAGGGTAAAACGGTAATTTTATA
119029866 CAAGTCGAGGG
1 -AA-TCGAGGG
119029877 CATTTCAATA
Statistics
Matches: 105, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
26 27 0.26
27 71 0.68
28 7 0.07
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:119029778 original size:53 final size:52
Alignment explanation
Indices: 119029721--119029863 Score: 178
Period size: 53 Copynumber: 2.7 Consensus size: 52
119029711 AGGGGTATTT
*
119029721 CAGTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAA
1 CAGTAATTTCA-AATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAA
* * * *
119029774 CAGTAATTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTT-CAAATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAA
** *
119029827 TGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTT
1 CAGTAATT-T-CAAATCGAGGGTAAAACGGTAATTTT
119029864 TACAAGTCGA
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 52 0.67
54 26 0.33
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.29
Consensus pattern (52 bp):
CAGTAATTTCAAATCGAGGGTAAAACGGTAATTTTATAAATCAAGGGTAAAA
Found at i:119030584 original size:26 final size:26
Alignment explanation
Indices: 119030548--119030709 Score: 279
Period size: 26 Copynumber: 6.2 Consensus size: 26
119030538 TGATACAAAT
*
119030548 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
119030574 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119030600 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119030626 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119030652 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
119030678 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
119030704 TGATAA
1 TGATAA
119030710 GAATTTCATG
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 130 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:119030642 original size:78 final size:78
Alignment explanation
Indices: 119030548--119030709 Score: 315
Period size: 78 Copynumber: 2.1 Consensus size: 78
119030538 TGATACAAAT
119030548 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTA
119030613 GGTAAATGTTTCA
66 GGTAAATGTTTCA
*
119030626 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTA
119030691 GGTAAATGTTTCA
66 GGTAAATGTTTCA
119030704 TGATAA
1 TGATAA
119030710 GAATTTCATG
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 83 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTCATGATAATGGGTTA
GGTAAATGTTTCA
Found at i:119032368 original size:27 final size:27
Alignment explanation
Indices: 119032328--119032468 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
119032318 AGGAAGCGTC
119032328 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
119032355 CTGGTGGCTTTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
119032382 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* * *
119032409 CTGGTGGCTCTACCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
119032436 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
119032463 CTGGTG
1 CTGGTG
119032469 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
26 10 0.10
27 87 0.87
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:119032410 original size:54 final size:53
Alignment explanation
Indices: 119032328--119032486 Score: 221
Period size: 54 Copynumber: 3.0 Consensus size: 53
119032318 AGGAAGCGTC
119032328 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
* *
119032382 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
* * * * *
119032436 CTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCGTCACA-ATATCTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTGGCTTTGCCACATATATCTG
119032487 GCAGCCTCGC
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 14 0.15
54 80 0.85
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
Found at i:119032479 original size:27 final size:27
Alignment explanation
Indices: 119032328--119032486 Score: 145
Period size: 27 Copynumber: 5.9 Consensus size: 27
119032318 AGGAAGCGTC
119032328 CTGGTGGCTAT-GCCACAATTATCTG-AT
1 CTGGTGGCT-TCGCCACAA-TATCTGTAT
*
119032355 CTGGTGGCTTTGCCACATATATCTGT-T
1 CTGGTGGCTTCGCCACA-ATATCTGTAT
*
119032382 CTGGTGGCTAT-GCCACGATTATCTG-AT
1 CTGGTGGCT-TCGCCAC-AATATCTGTAT
*
119032409 CTGGTGGC-TCTACCACATATATCTGT-T
1 CTGGTGGCTTC-GCCACA-ATATCTGTAT
119032436 CTGGTGGC-TCTGCCACAATATCTGTAT
1 CTGGTGGCTTC-GCCACAATATCTGTAT
* *
119032463 CTGGTGACTTCGTCACAATATCTG
1 CTGGTGGCTTCGCCACAATATCTG
119032487 GCAGCCTCGC
Statistics
Matches: 114, Mismatches: 6, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
25 1 0.01
26 10 0.09
27 98 0.86
28 5 0.04
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTTCGCCACAATATCTGTAT
Found at i:119034872 original size:50 final size:49
Alignment explanation
Indices: 119034818--119034964 Score: 127
Period size: 42 Copynumber: 3.1 Consensus size: 49
119034808 AAAAACTATT
119034818 TAAAATGGGTTAATGCTAGTTTAAATATTTAATTTTGTTGCTATAATTTA
1 TAAAATGGGTTAAT-CTAGTTTAAATATTTAATTTTGTTGCTATAATTTA
* * * * *
119034868 TAAAAT--G--AA--T-GTTTATATTTTTAATATT-TT--TAT-TTGTGTT
1 TAAAATGGGTTAATCTAGTTTAAATATTTAATTTTGTTGCTATAAT-T-TA
*
119034908 TAAAATGGGTTAATTCTAGTTTAAATATTTAATTTTGTTGCTCTAATTTA
1 TAAAATGGGTTAA-TCTAGTTTAAATATTTAATTTTGTTGCTATAATTTA
119034958 TAAAATG
1 TAAAATG
119034965 AATGTTTATA
Statistics
Matches: 72, Mismatches: 11, Indels: 28
0.65 0.10 0.25
Matches are distributed among these distances:
38 1 0.01
39 4 0.06
40 7 0.10
41 2 0.03
42 16 0.22
43 1 0.01
44 2 0.03
46 2 0.03
47 1 0.01
48 16 0.22
49 2 0.03
50 14 0.19
51 3 0.04
52 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.51
Consensus pattern (49 bp):
TAAAATGGGTTAATCTAGTTTAAATATTTAATTTTGTTGCTATAATTTA
Found at i:119034904 original size:49 final size:48
Alignment explanation
Indices: 119034851--119034994 Score: 119
Period size: 49 Copynumber: 3.1 Consensus size: 48
119034841 AATATTTAAT
119034851 TTTGTTGCTATAATTTATAAAATGAATGTTTATATTTTTAATATTTTTA
1 TTTGTTGCT-TAATTTATAAAATGAATGTTTATATTTTTAATATTTTTA
** * * * *
119034900 TTTG-TG------TT-TAAAATGGGT-TAATTCTAGTTTAAATA-TTTAA
1 TTTGTTGCTTAATTTATAAAATGAATGT--TTATATTTTTAATATTTTTA
119034940 TTTTGTTGCTCTAATTTATAAAATGAATGTTTATATTTTTAATATTTTTA
1 -TTTGTTGCT-TAATTTATAAAATGAATGTTTATATTTTTAATATTTTTA
119034990 TTTGT
1 TTTGT
119034995 GTTTGTTAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 28
0.63 0.11 0.26
Matches are distributed among these distances:
39 1 0.01
40 12 0.17
41 17 0.25
42 2 0.03
48 2 0.03
49 22 0.32
50 12 0.17
51 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (48 bp):
TTTGTTGCTTAATTTATAAAATGAATGTTTATATTTTTAATATTTTTA
Found at i:119034969 original size:90 final size:90
Alignment explanation
Indices: 119034816--119034998 Score: 348
Period size: 90 Copynumber: 2.0 Consensus size: 90
119034806 TTAAAAACTA
119034816 TTTAAAATGGGTTAATGCTAGTTTAAATATTTAATTTTGTTGCTATAATTTATAAAATGAATGTT
1 TTTAAAATGGGTTAATGCTAGTTTAAATATTTAATTTTGTTGCTATAATTTATAAAATGAATGTT
119034881 TATATTTTTAATATTTTTATTTGTG
66 TATATTTTTAATATTTTTATTTGTG
* *
119034906 TTTAAAATGGGTTAATTCTAGTTTAAATATTTAATTTTGTTGCTCTAATTTATAAAATGAATGTT
1 TTTAAAATGGGTTAATGCTAGTTTAAATATTTAATTTTGTTGCTATAATTTATAAAATGAATGTT
119034971 TATATTTTTAATATTTTTATTTGTG
66 TATATTTTTAATATTTTTATTTGTG
119034996 TTT
1 TTT
119034999 GTTAATTTTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 91 1.00
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.55
Consensus pattern (90 bp):
TTTAAAATGGGTTAATGCTAGTTTAAATATTTAATTTTGTTGCTATAATTTATAAAATGAATGTT
TATATTTTTAATATTTTTATTTGTG
Found at i:119038020 original size:2 final size:2
Alignment explanation
Indices: 119038015--119038058 Score: 70
Period size: 2 Copynumber: 21.5 Consensus size: 2
119038005 CAAAATCATG
*
119038015 TA TA TA TA AA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119038058 T
1 T
119038059 GTCTTATAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:119042007 original size:20 final size:20
Alignment explanation
Indices: 119041954--119042007 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
119041944 GAATATGAAT
*
119041954 ACCGAAGTGTATACAGGGGC
1 ACCGAAGTGTAAACAGGGGC
* * *
119041974 ACCAAACTGCAAACAGGGGC
1 ACCGAAGTGTAAACAGGGGC
119041994 ACCGAAGTGTAAAC
1 ACCGAAGTGTAAAC
119042008 CCCGTACAAG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.37, C:0.24, G:0.28, T:0.11
Consensus pattern (20 bp):
ACCGAAGTGTAAACAGGGGC
Found at i:119043890 original size:18 final size:19
Alignment explanation
Indices: 119043867--119043903 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
119043857 GGTTTGCTTG
119043867 TTAAAG-ATTGCTTT-AATC
1 TTAAAGCATT-CTTTCAATC
119043885 TTAAAGCATTCTTTCAATC
1 TTAAAGCATTCTTTCAATC
119043904 CTTGTCCTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.43
Consensus pattern (19 bp):
TTAAAGCATTCTTTCAATC
Found at i:119055808 original size:90 final size:89
Alignment explanation
Indices: 119055427--119055884 Score: 466
Period size: 90 Copynumber: 5.1 Consensus size: 89
119055417 GATACAAGAA
* * * * * *
119055427 AATACGAAAATTCTAGAAAACTATTTTACGAAAATATAAAATTTGACCAACAAATAATACGA-AC
1 AATACGAACATTTTAGAAAACTAATATACAAAAATATAAAATTTGACCAACAAATAATACTAGAC
* * *
119055491 AAAAATTGATTTGCAGATACAAAAA-
66 TAAAATT-TTTTACAGAT-CAAAAAT
* * *
119055516 AATACAAACATTTTAGAAAACTGATATACAAAAATATAAAATTTGACCAACAAATAATA-TAGGC
1 AATACGAACATTTTAGAAAACTAATATACAAAAATATAAAATTTGACCAACAAATAATACTAGAC
*
119055580 TAAAATTGATTTACAGAT-AAAAA-
66 TAAAATT-TTTTACAGATCAAAAAT
* * *
119055603 AATACGAACATTTTAGAAAACTGATATACGAAAATATAAAATTTGACCAACAAATAATAC-GGAC
1 AATACGAACATTTTAGAAAACTAATATACAAAAATATAAAATTTGACCAACAAATAATACTAGAC
* *
119055667 TAAAATATTTTTACATATCTAAAATT
66 TAAAAT-TTTTTACAGATC-AAAAAT
* * * * **
119055693 ATTACAGAA-ATTCTAGAAAACTAATATACAAAAATATAAAAGTCGAAAAACAAATAATACTA-A
1 AATAC-GAACATTTTAGAAAACTAATATACAAAAATATAAAATTTGACCAACAAATAATACTAGA
**
119055756 CTAAAATATTTTTATTGATCCAAAAAT
65 CTAAAAT-TTTTTACAGAT-CAAAAAT
* * * ** * *
119055783 AATTCGAACATTTTACAAAATTAATATATGAAAATATAAAATTTGACCAATAAATAATAC-ATAC
1 AATACGAACATTTTAGAAAACTAATATACAAAAATATAAAATTTGACCAACAAATAATACTAGAC
119055847 TAAAATTTATTTACAGATACAAAAAT
66 TAAAATTT-TTTACAGAT-CAAAAAT
119055873 AATACGAACATT
1 AATACGAACATT
119055885 GTGAATAGTA
Statistics
Matches: 310, Mismatches: 47, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
87 78 0.25
88 2 0.01
89 79 0.25
90 147 0.47
91 4 0.01
ACGTcount: A:0.53, C:0.11, G:0.07, T:0.28
Consensus pattern (89 bp):
AATACGAACATTTTAGAAAACTAATATACAAAAATATAAAATTTGACCAACAAATAATACTAGAC
TAAAATTTTTTACAGATCAAAAAT
Found at i:119056209 original size:33 final size:33
Alignment explanation
Indices: 119056165--119056241 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
119056155 CCACTACATC
* * *
119056165 ACACTCATAAATGCAGTATTCCTATTTGATGGT
1 ACACTCCTAAATGCAGTATCCCCATTTGATGGT
119056198 ACACTCCTAAATGCAGTATCCCCATTTGATGGT
1 ACACTCCTAAATGCAGTATCCCCATTTGATGGT
119056231 ACACTCCTAAA
1 ACACTCCTAAA
119056242 CATTCCAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (33 bp):
ACACTCCTAAATGCAGTATCCCCATTTGATGGT
Found at i:119057701 original size:3 final size:3
Alignment explanation
Indices: 119057695--119057722 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
119057685 ACACTACTAT
119057695 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
119057723 ATATAGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:119057933 original size:12 final size:13
Alignment explanation
Indices: 119057918--119057973 Score: 53
Period size: 12 Copynumber: 4.2 Consensus size: 13
119057908 AATAGGGGTG
119057918 ATAATA-ATAATA
1 ATAATACATAATA
*
119057930 ATAATACA-AACA
1 ATAATACATAATA
119057942 ATAATACATATATA
1 ATAATACATA-ATA
*
119057956 TATATATATATAATA
1 -ATA-ATACATAATA
119057971 ATA
1 ATA
119057974 GTAGTCAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
12 17 0.47
13 2 0.06
14 5 0.14
15 6 0.17
16 6 0.17
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (13 bp):
ATAATACATAATA
Found at i:119058061 original size:3 final size:3
Alignment explanation
Indices: 119058048--119058127 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
119058038 GATGGTATAT
119058048 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
119058092 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
119058128 AAAAATAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:119058072 original size:12 final size:12
Alignment explanation
Indices: 119058048--119058128 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
119058038 GATGGTATAT
119058048 ATAATAT-AATA
1 ATAATATAAATA
119058059 ATAATATAAATA
1 ATAATATAAATA
*
119058071 ATAATATATACATG
1 ATAATATA-A-ATA
*
119058085 AGAA-AT-AATA
1 ATAATATAAATA
119058095 ATAATATAAATA
1 ATAATATAAATA
* *
119058107 ATAGTAAAAATA
1 ATAATATAAATA
*
119058119 ATAAAATAAA
1 ATAATATAAA
119058129 AAAATAAAAC
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 10 0.18
12 33 0.59
13 3 0.05
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:119058074 original size:18 final size:18
Alignment explanation
Indices: 119058044--119058123 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
119058034 TGGAGATGGT
119058044 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
119058062 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
* *
119058081 CAT-GAGA-AATAATAATA
1 -ATATAAATAATAATAATA
* *
119058098 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
119058116 ATAATAAA
1 AT-ATAAA
119058124 ATAAAAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 2 0.04
17 8 0.16
18 28 0.56
19 10 0.20
20 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:119058646 original size:30 final size:30
Alignment explanation
Indices: 119058612--119058693 Score: 146
Period size: 30 Copynumber: 2.7 Consensus size: 30
119058602 ATTTGATGGT
*
119058612 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
*
119058642 GTAGGTGCAAGTGGGAGGCAATGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
119058672 GTAGGTGCAAGTGGGAGGCAAG
1 GTAGGTGCAAGTGGGAGGCAAG
119058694 ATGGCTAGGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.26, C:0.07, G:0.50, T:0.17
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
Found at i:119060040 original size:21 final size:20
Alignment explanation
Indices: 119060007--119060045 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
119059997 ATTTTATCCT
119060007 TTAATATTATTATAATAATA
1 TTAATATTATTATAATAATA
*
119060027 TTAATTTTAATTATAATAA
1 TTAATATT-ATTATAATAA
119060046 CAATCATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTAATATTATTATAATAATA
Found at i:119060054 original size:21 final size:21
Alignment explanation
Indices: 119060015--119060054 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
119060005 CTTTAATATT
* *
119060015 ATTATAATAATATTAATTTTA
1 ATTATAATAACAATAATTTTA
*
119060036 ATTATAATAACAATCATTT
1 ATTATAATAACAATAATTT
119060055 AAAACACGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTATAATAACAATAATTTTA
Found at i:119061328 original size:2 final size:2
Alignment explanation
Indices: 119061321--119061364 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
119061311 TATCTAATAA
119061321 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119061363 AT
1 AT
119061365 GAAGTATACT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119065040 original size:40 final size:40
Alignment explanation
Indices: 119064985--119065065 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
119064975 ATGGAACTCT
119064985 ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
1 ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
119065025 ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
1 ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
119065065 A
1 A
119065066 GTATAACTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (40 bp):
ATCTAAATTGGCAAAATAACTTATTTGCTTGAGTATCTGC
Found at i:119067538 original size:24 final size:24
Alignment explanation
Indices: 119067508--119067593 Score: 69
Period size: 24 Copynumber: 3.8 Consensus size: 24
119067498 AATAATAATT
119067508 TTATATTAA-AATTATTATTAAAAA
1 TTATATTAATAA-TATTATTAAAAA
*
119067532 TTATATTAATAATGTTATT--AAA
1 TTATATTAATAATATTATTAAAAA
* *
119067554 TTATA-T-ATTATTTTATT--AAA
1 TTATATTAATAATATTATTAAAAA
119067574 TTATATTTAATAATAATTAT
1 TTATA-TTAATAAT-ATTAT
119067594 GTTAAAATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
20 17 0.33
21 1 0.02
22 9 0.17
23 4 0.08
24 19 0.37
25 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (24 bp):
TTATATTAATAATATTATTAAAAA
Found at i:119067818 original size:44 final size:46
Alignment explanation
Indices: 119067748--119067841 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
119067738 ATTACAACAT
119067748 CATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGCTCTACTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTACTC
*** *
119067792 CATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTACTC
119067838 CATT
1 CATT
119067842 ACAGCTCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 24 0.55
45 2 0.05
46 18 0.41
ACGTcount: A:0.34, C:0.29, G:0.06, T:0.31
Consensus pattern (46 bp):
CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTACTC
Found at i:119067844 original size:16 final size:16
Alignment explanation
Indices: 119067823--119067877 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
119067813 TGAATTACTG
119067823 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
119067839 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
* *
119067855 ATTACAACCCTATTCC
1 ATTACAGCTCTATTCC
119067871 ATTACAG
1 ATTACAG
119067878 TGAACCAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:119070940 original size:40 final size:41
Alignment explanation
Indices: 119070896--119070981 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 41
119070886 TTTTACATTC
*
119070896 GCGGCGTTTGCAAT-AAAACGCCGCAAAAAACAGAGCAATA
1 GCGGCGTTTGCAATCAAAACGCCACAAAAAACAGAGCAATA
*** * *
119070936 GCGGCGTTTTTGATCAAAACGCCACTAAAAACTGAGCAATA
1 GCGGCGTTTGCAATCAAAACGCCACAAAAAACAGAGCAATA
119070977 GCGGC
1 GCGGC
119070982 ATTTTTGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 11 0.28
41 28 0.72
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (41 bp):
GCGGCGTTTGCAATCAAAACGCCACAAAAAACAGAGCAATA
Found at i:119071030 original size:41 final size:41
Alignment explanation
Indices: 119070910--119071030 Score: 154
Period size: 41 Copynumber: 3.0 Consensus size: 41
119070900 CGTTTGCAAT
* * **
119070910 AAAACGCCGCAAAAAACAGAGCAATAGCGGCGTTTTTGATC
1 AAAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGCC
* *
119070951 AAAACGCCACTAAAAACTGAGCAATAGCGGCATTTTTGGCC
1 AAAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGCC
* *
119070992 CAAACGCCGCTAAAAACTGAAG-AATAGCGGCGCTTTTGG
1 AAAACGCCGCTAAAAACTG-AGCAATAGCGGCGTTTTTGG
119071031 AAAAACTTCG
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
41 67 0.97
42 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGCC
Found at i:119071061 original size:41 final size:42
Alignment explanation
Indices: 119071016--119071118 Score: 174
Period size: 41 Copynumber: 2.5 Consensus size: 42
119071006 AACTGAAGAA
* *
119071016 TAGCGGCGCTTTTGGAAAAACT-TCGCTATAGGCTGATGTTT
1 TAGCGGCGCTTTTGGAAAAACTGCCGCTATAGGCCGATGTTT
119071057 TAGCGGCGCTTTTGGAAAAA-TGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACTGCCGCTATAGGCCGATGTTT
119071098 TAGCGGCGCTTTTGGAAAAAC
1 TAGCGGCGCTTTTGGAAAAAC
119071119 GCCTCAAAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
40 1 0.02
41 57 0.98
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (42 bp):
TAGCGGCGCTTTTGGAAAAACTGCCGCTATAGGCCGATGTTT
Found at i:119071461 original size:18 final size:18
Alignment explanation
Indices: 119071433--119071482 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
119071423 TCCCTTGTTA
119071433 TATATATATATATTAA-ACT
1 TATA-ATATATATTAAGA-T
*
119071452 TCTAATATATATTAAGAT
1 TATAATATATATTAAGAT
119071470 TATAATATATATT
1 TATAATATATATT
119071483 TAGGGTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (18 bp):
TATAATATATATTAAGAT
Found at i:119071905 original size:15 final size:15
Alignment explanation
Indices: 119071885--119071919 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
119071875 GATTTTAATG
*
119071885 TATAAGATAAATGTA
1 TATAAGATAAATATA
119071900 TATAAGATAAATATA
1 TATAAGATAAATATA
119071915 TATAA
1 TATAA
119071920 ATTATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (15 bp):
TATAAGATAAATATA
Found at i:119071958 original size:24 final size:23
Alignment explanation
Indices: 119071891--119071958 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
119071881 AATGTATAAG
* *
119071891 ATAAATGTATATAAGATAAATATAT
1 ATAAAT-TATATATGA-AAAAATAT
* *
119071916 ATAAATTATTATTTTAAAAAATAT
1 ATAAATTA-TATATGAAAAAATAT
119071940 ATAAATATATATATGAAAA
1 ATAAAT-TATATATGAAAA
119071959 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
ATAAATTATATATGAAAAAATAT
Found at i:119075493 original size:373 final size:373
Alignment explanation
Indices: 119074808--119075722 Score: 1769
Period size: 373 Copynumber: 2.5 Consensus size: 373
119074798 CTTGTCCATT
119074808 AAAATTACAACAATAGCTGA-CTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
1 AAAATTACAACAATAGCTGATC-TTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTA
119074872 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
65 TATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGG
*
119074937 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAATGTTCTATCGAG
130 TGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAG
119075002 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACT
195 CTCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACT
119075067 ACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTT
260 ACGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTT
**
119075132 AATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
325 AATATTTAATATTTTTAAATTTCTACAAAAGTTATAACTACTTTTTATC
119075181 AAAATTACAACAATAGCTGATCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGATCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
119075246 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
119075311 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
*
119075376 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCTAATTTACTTATAAAAATTAAACTA
196 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
119075441 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
261 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
119075506 ATATTTAATATTTTTAAATTTCTACAAAAGTTATAACTACTTTTTATC
326 ATATTTAATATTTTTAAATTTCTACAAAAGTTATAACTACTTTTTATC
*
119075554 AAAATTACAACAATAGTTGATCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGATCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
119075619 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
119075684 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
119075723 TGTTTCAATT
Statistics
Matches: 536, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
373 535 1.00
374 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.39
Consensus pattern (373 bp):
AAAATTACAACAATAGCTGATCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
ATATTTAATATTTTTAAATTTCTACAAAAGTTATAACTACTTTTTATC
Found at i:119075837 original size:24 final size:24
Alignment explanation
Indices: 119075810--119075877 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
119075800 ATTATTATTG
*
119075810 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
119075834 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
119075858 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
119075878 CCATTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.05
24 36 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:119076098 original size:15 final size:15
Alignment explanation
Indices: 119076054--119076109 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
119076044 AACGACATGT
119076054 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
119076070 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
119076083 ATATTATTTAATTAA
1 ATATTATTTAATTAA
119076098 ATATTATTTAAT
1 ATATTATTTAAT
119076110 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:119076236 original size:18 final size:18
Alignment explanation
Indices: 119076214--119076403 Score: 141
Period size: 18 Copynumber: 10.3 Consensus size: 18
119076204 TATTTGATAT
* * *
119076214 CATAATTTACATAACCTA
1 CATAACTTATATAACTTA
* *
119076232 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
119076250 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
119076268 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
119076286 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
* *
119076303 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
**
119076321 CATAATACTTAAATATATTTTATA
1 CAT-A-ACTT--ATATA-ACT-TA
* *
119076345 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
119076364 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
119076382 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
119076399 CATAA
1 CATAA
119076404 ATTGTGGAGT
Statistics
Matches: 136, Mismatches: 28, Indels: 17
0.75 0.15 0.09
Matches are distributed among these distances:
17 29 0.21
18 81 0.60
19 3 0.02
20 5 0.04
21 4 0.03
22 4 0.03
23 4 0.03
24 3 0.02
25 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:119076403 original size:9 final size:9
Alignment explanation
Indices: 119076214--119076386 Score: 123
Period size: 9 Copynumber: 18.6 Consensus size: 9
119076204 TATTTGATAT
*
119076214 CATAATTTA
1 CATAACTTA
*
119076223 CATAACCTA
1 CATAACTTA
* *
119076232 TATAACATA
1 CATAACTTA
*
119076241 TATAACTTA
1 CATAACTTA
119076250 CATAACTTA
1 CATAACTTA
* *
119076259 TATAACATA
1 CATAACTTA
119076268 CATAACTTA
1 CATAACTTA
*
119076277 TATAACTTA
1 CATAACTTA
*
119076286 TATAACTTA
1 CATAACTTA
* *
119076295 GATAA-ATA
1 CATAACTTA
*
119076303 TATAACTTA
1 CATAACTTA
119076312 CATAACTTA
1 CATAACTTA
119076321 CATAATACTTA
1 CAT-A-ACTTA
* *
119076332 AATATATTTTATA
1 CATA-A--CT-TA
*
119076345 TCATAATTTA
1 -CATAACTTA
119076355 CATAACTTA
1 CATAACTTA
119076364 CATAACTTA
1 CATAACTTA
*
119076373 TATAACTTA
1 CATAACTTA
*
119076382 GATAA
1 CATAA
119076387 ATATATAATT
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
8 6 0.04
9 107 0.79
10 6 0.04
11 9 0.07
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:119078967 original size:33 final size:33
Alignment explanation
Indices: 119078919--119078998 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 33
119078909 AGAATTAATA
* *
119078919 TTTTTGGTTGTATTTTTTATGTTAAATTTGTTG
1 TTTTTGGTTGCATTTTTTATATTAAATTTGTTG
* *
119078952 TTTTTGGCTGCA--TTTTATATTATATTTGTTG
1 TTTTTGGTTGCATTTTTTATATTAAATTTGTTG
* *
119078983 TATTTGGTTGGATTTT
1 TTTTTGGTTGCATTTT
119078999 AATGTAGGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
31 26 0.68
33 12 0.32
ACGTcount: A:0.15, C:0.03, G:0.19, T:0.64
Consensus pattern (33 bp):
TTTTTGGTTGCATTTTTTATATTAAATTTGTTG
Found at i:119079145 original size:43 final size:43
Alignment explanation
Indices: 119079075--119079322 Score: 379
Period size: 43 Copynumber: 5.8 Consensus size: 43
119079065 AAAAAAAGCT
* * * *
119079075 CCGCTAAAAGCCTTGACGTTTAACGGCGCTTTACACACAAACG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
*
119079118 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAAAG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
* * *
119079161 CCTCTAAAAGCCTTGACGTTTAGCGACGCTTTTCCCACAAACG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
* * *
119079204 CCGTTAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
*
119079247 CCGCTAAAAGCCTTGACCTTTAGCGGCGATTTTCCCACAAACG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
*
119079290 CCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
119079323 TTTTCCAATA
Statistics
Matches: 187, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 187 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (43 bp):
CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
Found at i:119079312 original size:129 final size:129
Alignment explanation
Indices: 119079079--119079314 Score: 418
Period size: 129 Copynumber: 1.8 Consensus size: 129
119079069 AAAGCTCCGC
119079079 TAAAAGCCTTGACGTTTAACGGCGCTTTACACACAAACGCCGCTAAAAGCCTTGACCTTTAGCGG
1 TAAAAGCCTTGACGTTTAACGGCGCTTTACACACAAACGCCGCTAAAAGCCTTGACCTTTAGCGG
* * *
119079144 CGCTTTTCCCACAAAAGCCTCTAAAAGCCTTGACGTTTAGCGACGCTTTTCCCACAAACGCCGT
66 CGATTTTCCCACAAAAGCCGCTAAAAGCCTTGACCTTTAGCGACGCTTTTCCCACAAACGCCGT
* *
119079208 TAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGG
1 TAAAAGCCTTGACGTTTAACGGCGCTTTACACACAAACGCCGCTAAAAGCCTTGACCTTTAGCGG
*
119079273 CGATTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCG
66 CGATTTTCCCACAAAAGCCGCTAAAAGCCTTGACCTTTAGCG
119079315 GCGTTTTTTT
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 101 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.24
Consensus pattern (129 bp):
TAAAAGCCTTGACGTTTAACGGCGCTTTACACACAAACGCCGCTAAAAGCCTTGACCTTTAGCGG
CGATTTTCCCACAAAAGCCGCTAAAAGCCTTGACCTTTAGCGACGCTTTTCCCACAAACGCCGT
Found at i:119082577 original size:32 final size:32
Alignment explanation
Indices: 119082541--119082606 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
119082531 ATGTTTTGGG
*
119082541 TTAGTTATTCGAAATGCTAAAGCGGAGGTTAT
1 TTAGTTATTCAAAATGCTAAAGCGGAGGTTAT
*
119082573 TTAGTTATTCAAAATGCTAAAGTGGAGGTTAT
1 TTAGTTATTCAAAATGCTAAAGCGGAGGTTAT
119082605 TT
1 TT
119082607 GCTCAAAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.38
Consensus pattern (32 bp):
TTAGTTATTCAAAATGCTAAAGCGGAGGTTAT
Found at i:119084047 original size:16 final size:17
Alignment explanation
Indices: 119084016--119084048 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119084006 TTCATAAGTA
119084016 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
119084033 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
119084049 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:119084386 original size:46 final size:46
Alignment explanation
Indices: 119084329--119084646 Score: 410
Period size: 46 Copynumber: 7.0 Consensus size: 46
119084319 TTATCTTTGA
* * * *
119084329 CATGATGCCATGGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
*
119084375 CATGTTGCCATGGTATTTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * *
119084421 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC-CGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
*
119084466 CATGTTG-CATGGTATCTTTCAACCATGGTCTTATTCATTTTC-CGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
* *
119084511 CATGTTGGCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* ** *
119084557 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * * **
119084603 CAGGTTGCCATGCTATCTTTCAACCATGATCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
119084647 ATCAGAGAGC
Statistics
Matches: 249, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
44 30 0.12
45 29 0.12
46 190 0.76
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:119084581 original size:136 final size:138
Alignment explanation
Indices: 119084334--119084643 Score: 453
Period size: 136 Copynumber: 2.3 Consensus size: 138
119084324 TTTGACATGA
* * * *
119084334 TGCCATGGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATTTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCCGTCATGTTGCCATGGTATCTTTCAAC
* **
119084399 CATGGTCTTATTCATTTCATGTCACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC-
66 CATGGTCTTATTCATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
* *
119084463 CGTCATGT
131 CATCAGGT
* *
119084471 TG-CATGGTATCTTTCAACCATGGTCTTATTCATTTTCCGTCATGTTGGCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCCGTCATGTTGCCATGGTATCTTTCAAC
* *
119084535 CATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTATTCATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
119084600 TATCAGGT
131 CATCAGGT
* * *
119084608 TGCCATGCTATCTTTCAACCATGATCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTT
119084644 CATATCAGAG
Statistics
Matches: 153, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
136 115 0.75
137 9 0.06
138 29 0.19
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCCGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATATCACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
CATCAGGT
Found at i:119087663 original size:8 final size:8
Alignment explanation
Indices: 119087650--119087676 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
119087640 TTTTGCACTA
119087650 AATATTTT
1 AATATTTT
119087658 AATATTTT
1 AATATTTT
119087666 AATATTTT
1 AATATTTT
119087674 AAT
1 AAT
119087677 TTTAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
AATATTTT
Found at i:119094947 original size:21 final size:21
Alignment explanation
Indices: 119094922--119094965 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
119094912 ATTTTAAAAA
119094922 ATTAAATCAAATTAAATTTTC
1 ATTAAATCAAATTAAATTTTC
119094943 ATTAAATCAAATTAAATTTTC
1 ATTAAATCAAATTAAATTTTC
119094964 AT
1 AT
119094966 ACATATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTAAATCAAATTAAATTTTC
Found at i:119097279 original size:53 final size:53
Alignment explanation
Indices: 119097138--119097288 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
119097128 ACAAGTGTGC
* **
119097138 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
119097191 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
119097244 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
119097289 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:119104270 original size:53 final size:53
Alignment explanation
Indices: 119104129--119104279 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
119104119 ACAAGTGTGC
* **
119104129 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
119104182 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
119104235 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
119104280 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:119106170 original size:12 final size:12
Alignment explanation
Indices: 119106153--119106177 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119106143 AAGATTAGAC
119106153 AATAAAGAAGAT
1 AATAAAGAAGAT
119106165 AATAAAGAAGAT
1 AATAAAGAAGAT
119106177 A
1 A
119106178 GACGGAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (12 bp):
AATAAAGAAGAT
Found at i:119114779 original size:25 final size:25
Alignment explanation
Indices: 119114751--119114808 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 25
119114741 AATTTGATAT
*
119114751 TTCAGTAAAGAAGGCATTGTTGAGA
1 TTCAGCAAAGAAGGCATTGTTGAGA
*
119114776 TTCAGCAGAGAAGGCATTGTTGAGA
1 TTCAGCAAAGAAGGCATTGTTGAGA
119114801 TTC-GCAAA
1 TTCAGCAAA
119114809 CTCAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (25 bp):
TTCAGCAAAGAAGGCATTGTTGAGA
Found at i:119115625 original size:24 final size:23
Alignment explanation
Indices: 119115558--119115625 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 23
119115548 TTTTAATAAT
* *
119115558 AATTATA-TTAAGAATGTTATTA
1 AATTATATTTAATAATATTATTA
* *
119115580 AATTATATATT-ATTATCTTTATTA
1 AATTATAT-TTAATAAT-ATTATTA
119115604 AATTATATTTAATAATAATTAT
1 AATTATATTTAATAAT-ATTAT
119115626 ATTAAAGTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
22 7 0.19
23 5 0.14
24 24 0.67
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (23 bp):
AATTATATTTAATAATATTATTA
Found at i:119115688 original size:59 final size:62
Alignment explanation
Indices: 119115513--119115681 Score: 204
Period size: 63 Copynumber: 2.7 Consensus size: 62
119115503 ATACTATTTT
* ** *
119115513 TTAATATTATATATTATGATTTTTATT-CATTCATATTTTAATAATAATTATATT-AAGAATGTT
1 TTAA-ATTATATATTATTATCATTATTAAATT-ATA-TTTAATAATAATTATATTAAAGAATG-T
119115576 A
62 A
* *
119115577 TTAAATTATATATTATTATCTTTATTAAATTATATTTAATAATAATTATATTAAAGTATG-A
1 TTAAATTATATATTATTATCATTATTAAATTATATTTAATAATAATTATATTAAAGAATGTA
*
119115638 TTAAATTATTTATTATT-T-ATTATTAAATTATATTTAATAATAAT
1 TTAAATTATATATTATTATCATTATTAAATTATATTTAATAATAAT
119115682 CCTATTATAA
Statistics
Matches: 97, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
59 25 0.26
60 1 0.01
61 17 0.18
62 18 0.19
63 29 0.30
64 7 0.07
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (62 bp):
TTAAATTATATATTATTATCATTATTAAATTATATTTAATAATAATTATATTAAAGAATGTA
Found at i:119115880 original size:16 final size:16
Alignment explanation
Indices: 119115859--119115913 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
119115849 TGAATTACTG
119115859 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
119115875 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
* *
119115891 ATTACAGCCCCATTCC
1 ATTACAGCTCTATTCC
119115907 ATTACAG
1 ATTACAG
119115914 TGAACCAAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:119120815 original size:19 final size:19
Alignment explanation
Indices: 119120791--119120879 Score: 91
Period size: 19 Copynumber: 4.9 Consensus size: 19
119120781 AAAATCATTT
*
119120791 TAAATTATTTTCAAAAAAG
1 TAAATTATTTTCAGAAAAG
*
119120810 TAAATTATTTTC----TA-
1 TAAATTATTTTCAGAAAAG
*
119120824 TAAATTATTTTTAGAAAAG
1 TAAATTATTTTCAGAAAAG
119120843 TAAATTATTTAT-AGAAAAG
1 TAAATTATTT-TCAGAAAAG
119120862 TAAATTATTTTTCAGAAA
1 TAAATTA-TTTTCAGAAA
119120880 TTATTTTTCG
Statistics
Matches: 59, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
14 11 0.19
15 1 0.02
18 1 0.02
19 37 0.63
20 9 0.15
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (19 bp):
TAAATTATTTTCAGAAAAG
Found at i:119120848 original size:52 final size:52
Alignment explanation
Indices: 119120791--119120892 Score: 145
Period size: 52 Copynumber: 2.0 Consensus size: 52
119120781 AAAATCATTT
*
119120791 TAAATTATTT-TCAAAAAAGTAAATTA-TTTTCTATAAATTATTTTTAGAAAAG
1 TAAATTATTTAT-AAAAAAGTAAATTATTTTTC-AGAAATTATTTTTAGAAAAG
* *
119120843 TAAATTATTTATAGAAAAGTAAATTATTTTTCAGAAATTATTTTTCGAAA
1 TAAATTATTTATAAAAAAGTAAATTATTTTTCAGAAATTATTTTTAGAAA
119120893 TATATTTTAC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
52 39 0.87
53 6 0.13
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (52 bp):
TAAATTATTTATAAAAAAGTAAATTATTTTTCAGAAATTATTTTTAGAAAAG
Found at i:119120892 original size:13 final size:14
Alignment explanation
Indices: 119120863--119120900 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
119120853 ATAGAAAAGT
119120863 AAATTATTTTTCAG
1 AAATTATTTTTCAG
119120877 AAATTATTTTTC-G
1 AAATTATTTTTCAG
119120890 AAATATATTTT
1 AAAT-TATTTT
119120901 ACTGACAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (14 bp):
AAATTATTTTTCAG
Found at i:119124594 original size:12 final size:12
Alignment explanation
Indices: 119124577--119124601 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119124567 TTTAGATTTA
119124577 TTTTATTTTAAT
1 TTTTATTTTAAT
119124589 TTTTATTTTAAT
1 TTTTATTTTAAT
119124601 T
1 T
119124602 ATTTTATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTATTTTAAT
Found at i:119128095 original size:3 final size:3
Alignment explanation
Indices: 119128087--119128129 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
119128077 TCGATTTTAC
119128087 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
119128130 CCTAATATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:119128774 original size:3 final size:3
Alignment explanation
Indices: 119128766--119128837 Score: 81
Period size: 3 Copynumber: 23.7 Consensus size: 3
119128756 CTATCATTGC
* * * *
119128766 ATT ATT ATT ATT ATT AATA ATA ATA ATA ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
119128812 ATT ATT GTT ATT ATT ATT ATT TTT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
119128838 CATTGTTTGT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
3 60 0.97
4 2 0.03
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:119129365 original size:132 final size:133
Alignment explanation
Indices: 119129117--119129366 Score: 360
Period size: 132 Copynumber: 1.9 Consensus size: 133
119129107 TTATTCGTTT
* * * *
119129117 AAAAATTCTTTAAAACGGAGACGATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATCGTG
1 AAAAATTCTTTAAAACGAAGACAATGTTCGACGTTCAGCAATTCGGGGAATCGTGCCCTATCGTG
* * * * *
119129182 CTGGGTTGCAATTTCTTGTTTGCCCAAAATAATCGGATGTCTCTTTAGAATTTTGTTCATGTTTT
66 CTGGGTTGCAATTTCTCGTTTGCCAAAAATAATCGAATATCCCTTTAGAATTTTGTTCATGTTTT
119129247 CTA
131 CTA
*
119129250 AAAAATT-TTTAAAACGAAGGA-AATGTTCGACGTTCGGCAATTCGGGGAATCGTGCCCTATCGT
1 AAAAATTCTTTAAAACGAA-GACAATGTTCGACGTTCAGCAATTCGGGGAATCGTGCCCTATCGT
** *
119129313 GCTGGGTTGCAATTTCTCGTTTGTGAAAAATAATCGAATATCCCTTTGGAATTT
65 GCTGGGTTGCAATTTCTCGTTTGCCAAAAATAATCGAATATCCCTTTAGAATTT
119129367 CATTCACGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
132 94 0.91
133 9 0.09
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (133 bp):
AAAAATTCTTTAAAACGAAGACAATGTTCGACGTTCAGCAATTCGGGGAATCGTGCCCTATCGTG
CTGGGTTGCAATTTCTCGTTTGCCAAAAATAATCGAATATCCCTTTAGAATTTTGTTCATGTTTT
CTA
Found at i:119130886 original size:2 final size:2
Alignment explanation
Indices: 119130879--119130920 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
119130869 TACAAAAATA
119130879 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119130921 GACATGAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119133067 original size:30 final size:29
Alignment explanation
Indices: 119133025--119133153 Score: 96
Period size: 30 Copynumber: 4.3 Consensus size: 29
119133015 AGATTTTATG
* *
119133025 AGCCAGACGGGCTGGACACGTGGCCATGTA
1 AGCCA-ACGGGCTGGAAACATGGCCATGTA
* * *
119133055 ATCCACACGGGCTGGAAACATGGCCGTGTG
1 AGCCA-ACGGGCTGGAAACATGGCCATGTA
* * * *
119133085 AGCCAACGGGCTGGAAATAAGGCCGTGTG
1 AGCCAACGGGCTGGAAACATGGCCATGTA
* * * * *
119133114 ATCCATATGGGCTGGACACACGGCCATGTG
1 AGCCA-ACGGGCTGGAAACATGGCCATGTA
119133144 AGCCAGACGG
1 AGCCA-ACGG
119133154 ATTAGACACA
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
29 26 0.32
30 54 0.68
ACGTcount: A:0.25, C:0.26, G:0.35, T:0.15
Consensus pattern (29 bp):
AGCCAACGGGCTGGAAACATGGCCATGTA
Found at i:119133118 original size:59 final size:60
Alignment explanation
Indices: 119133023--119133153 Score: 156
Period size: 59 Copynumber: 2.2 Consensus size: 60
119133013 GCAGATTTTA
* ** * *
119133023 TGAGCCAGACGGGCTGGACACGTGGCCATGTAATCCACACGGGCTGGAAACATGGCCGTG
1 TGAGCCAGACGGGCTGGAAACAAGGCCATGTAATCCACACGGGCTGGAAACACGGCCATG
* * * * * *
119133083 TGAGCCA-ACGGGCTGGAAATAAGGCCGTGTGATCCATATGGGCTGGACACACGGCCATG
1 TGAGCCAGACGGGCTGGAAACAAGGCCATGTAATCCACACGGGCTGGAAACACGGCCATG
119133142 TGAGCCAGACGG
1 TGAGCCAGACGG
119133154 ATTAGACACA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
59 48 0.81
60 11 0.19
ACGTcount: A:0.24, C:0.25, G:0.35, T:0.15
Consensus pattern (60 bp):
TGAGCCAGACGGGCTGGAAACAAGGCCATGTAATCCACACGGGCTGGAAACACGGCCATG
Found at i:119135482 original size:42 final size:42
Alignment explanation
Indices: 119135425--119135514 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
119135415 CCTTCATAAG
* *
119135425 GAAGAT-GGTACTCTAATTGTCACAAAACATTGTACTGGCCT
1 GAAGATCGGCACTCTAATTGTCACAAAACATTGTACTGACCT
119135466 GAAGATCGGCACTCTAATTGTCACAAAACATTGTACTGACCT
1 GAAGATCGGCACTCTAATTGTCACAAAACATTGTACTGACCT
119135508 GAAGATC
1 GAAGATC
119135515 CTTACTTGGT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 6 0.13
42 40 0.87
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (42 bp):
GAAGATCGGCACTCTAATTGTCACAAAACATTGTACTGACCT
Found at i:119143915 original size:46 final size:46
Alignment explanation
Indices: 119143862--119144037 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
119143852 TATTTGGGCA
119143862 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
119143908 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
119143955 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
119144001 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
119144038 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:119144017 original size:93 final size:93
Alignment explanation
Indices: 119143858--119144029 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
119143848 GGGATATTTG
* *
119143858 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
119143923 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
119143951 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
119144016 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
119144030 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:119147008 original size:15 final size:15
Alignment explanation
Indices: 119146988--119147056 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
119146978 GTATCTTGGG
119146988 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
119147003 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
119147018 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
119147033 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
119147048 TTTCTTTAT
1 TTTCTTTAT
119147057 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:119147057 original size:30 final size:30
Alignment explanation
Indices: 119146979--119147066 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
119146969 CATAGTATCG
* * * *
119146979 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
119147009 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
119147039 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
119147067 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:119149499 original size:46 final size:46
Alignment explanation
Indices: 119149449--119149624 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
119149439 TATTTGGGCA
119149449 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
119149495 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
119149542 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
119149588 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
119149625 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:119149604 original size:93 final size:93
Alignment explanation
Indices: 119149445--119149616 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
119149435 TGGATATTTG
* *
119149445 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
119149510 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
119149538 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
119149603 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
119149617 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:119160130 original size:13 final size:13
Alignment explanation
Indices: 119160112--119160136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119160102 AATATTGCAT
119160112 GAAAATTTTTATA
1 GAAAATTTTTATA
119160125 GAAAATTTTTAT
1 GAAAATTTTTAT
119160137 CAAATATGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
GAAAATTTTTATA
Found at i:119161354 original size:33 final size:32
Alignment explanation
Indices: 119161317--119161440 Score: 99
Period size: 33 Copynumber: 3.8 Consensus size: 32
119161307 TACCCAAATG
* *
119161317 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTAC-ACTTGAAAAGGTAAGGTACACTTTGTGT
* * *
119161350 GTACACTTGGAAAAGGTTAGGTATACTTAGTGT
1 GTACACTT-GAAAAGGTAAGGTACACTTTGTGT
* * *
119161383 ATACTA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTAC-ACT-TGAAAAGGTAAGGTACACTTTGTGT
* *
119161416 GTACCACTTGGAAAGG-AATGTACAC
1 GTA-CACTTGAAAAGGTAAGGTACAC
119161441 CTCAAGTGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
32 11 0.15
33 60 0.80
34 4 0.05
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (32 bp):
GTACACTTGAAAAGGTAAGGTACACTTTGTGT
Found at i:119165274 original size:26 final size:26
Alignment explanation
Indices: 119165243--119165350 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
119165233 TGAAATGCCC
*
119165243 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
119165269 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
119165295 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
119165321 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
119165347 ATCA
1 ATCA
119165351 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:119171833 original size:32 final size:33
Alignment explanation
Indices: 119171786--119171937 Score: 98
Period size: 32 Copynumber: 4.7 Consensus size: 33
119171776 TACCCAAATG
* *
119171786 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACAACTTGAAAAGGTAAGGTACACTTTGTGT
* * * *
119171819 GTAC-ACTTGGAAAGGTTAGGTATACTTAGTGT
1 GTACAACTTGAAAAGGTAAGGTACACTTTGTGT
* * * *
119171851 ATACTA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACAACT-TGAAAAGGTAAGGTACACTTTGTGT
* * **
119171884 GTACCACTT-AGAAAGG-AATGTACACCTCAG-GT
1 GTACAACTTGA-AAAGGTAAGGTACA-CTTTGTGT
* *
119171916 GTACAACTGGAAAAGGAAAGGT
1 GTACAACTTGAAAAGGTAAGGT
119171938 GTGACAGACC
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
32 49 0.52
33 44 0.47
34 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (33 bp):
GTACAACTTGAAAAGGTAAGGTACACTTTGTGT
Found at i:119182448 original size:19 final size:18
Alignment explanation
Indices: 119182424--119182473 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
119182414 TTATATTAAT
119182424 ATAATATAATAATAATTTA
1 ATAATATAATAAT-ATTTA
*
119182443 ATAATAAAAATAATATTTA
1 ATAAT-ATAATAATATTTA
* *
119182462 CTTATATAATAA
1 ATAATATAATAA
119182474 GTAAATAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 6 0.23
19 13 0.50
20 7 0.27
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATATAATAATATTTA
Found at i:119182660 original size:20 final size:19
Alignment explanation
Indices: 119182635--119182684 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
119182625 ATCCTTATAC
119182635 CTAATTAACCTTAACTC-AAA
1 CTAATTAACC-TAAC-CAAAA
*
119182655 CTAATTCACCTAACCAAAA
1 CTAATTAACCTAACCAAAA
119182674 CTTAATTAACC
1 C-TAATTAACC
119182685 ACACAACTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 1 0.04
19 8 0.31
20 17 0.65
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (19 bp):
CTAATTAACCTAACCAAAA
Found at i:119191148 original size:32 final size:32
Alignment explanation
Indices: 119191112--119191177 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
119191102 GAGATAGTGA
119191112 GACTGCATGGGGTACCGATTTCAGTTATCTGC
1 GACTGCATGGGGTACCGATTTCAGTTATCTGC
119191144 GACTGCATGGGGTACCGATTTCAGTTATCTGC
1 GACTGCATGGGGTACCGATTTCAGTTATCTGC
119191176 GA
1 GA
119191178 TAGAGATCCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (32 bp):
GACTGCATGGGGTACCGATTTCAGTTATCTGC
Found at i:119197075 original size:13 final size:13
Alignment explanation
Indices: 119197052--119197086 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
119197042 TTTTTATCTC
119197052 ATTTTATTTTAGTT
1 ATTTTA-TTTAGTT
119197066 ATTTTATTTAGTT
1 ATTTTATTTAGTT
119197079 A-TTTATTT
1 ATTTTATTT
119197087 TCGTAACCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 7 0.33
13 8 0.38
14 6 0.29
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (13 bp):
ATTTTATTTAGTT
Found at i:119198603 original size:33 final size:31
Alignment explanation
Indices: 119198566--119198637 Score: 74
Period size: 33 Copynumber: 2.2 Consensus size: 31
119198556 TTTGAAGACT
**
119198566 TTTATTTATTATTT-CTACCTTTTTACTTTTAT
1 TTTATTTATT-TTTACTTACTTTTTA-TTTTAT
*
119198598 CTTTATTTGTTTTTAACTTACTTTTTATTTTAT
1 -TTTATTTATTTTT-ACTTACTTTTTATTTTAT
119198631 TTTATTT
1 TTTATTT
119198638 CTCTTTAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
32 10 0.29
33 15 0.44
34 9 0.26
ACGTcount: A:0.18, C:0.10, G:0.01, T:0.71
Consensus pattern (31 bp):
TTTATTTATTTTTACTTACTTTTTATTTTAT
Found at i:119198656 original size:32 final size:33
Alignment explanation
Indices: 119198584--119198667 Score: 86
Period size: 32 Copynumber: 2.6 Consensus size: 33
119198574 TTATTTCTAC
* *
119198584 CTTTTTACTTTTATCTTTATTTGTTTTTAACTTA
1 CTTTTTACTTTTATCTTTATTTCTCTTTAAC-TA
119198618 CTTTTTA-TTTTAT-TTTATTTCTCTTTAA-TA
1 CTTTTTACTTTTATCTTTATTTCTCTTTAACTA
*
119198648 CTAATTTTAC-TTCATCTTTA
1 CT--TTTTACTTTTATCTTTA
119198668 GGTTTTATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
30 4 0.09
32 22 0.51
33 10 0.23
34 7 0.16
ACGTcount: A:0.20, C:0.13, G:0.01, T:0.65
Consensus pattern (33 bp):
CTTTTTACTTTTATCTTTATTTCTCTTTAACTA
Found at i:119207702 original size:31 final size:30
Alignment explanation
Indices: 119207662--119207762 Score: 87
Period size: 31 Copynumber: 3.3 Consensus size: 30
119207652 TAATCATATT
*
119207662 AATAATAAATTAATAAAATATTATTTAGATA
1 AATATTAAATTAATAAAATA-TATTTAGATA
** * * * *
119207693 AATATTAAATTAAATTTAATAT-CTCATATT
1 AATATTAAATT-AATAAAATATATTTAGATA
* *
119207723 AATATTAAATTAATAAAATACCATCTAGATA
1 AATATTAAATTAATAAAATA-TATTTAGATA
119207754 AATATTAAA
1 AATATTAAA
119207763 ATAAATTTAA
Statistics
Matches: 52, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
29 7 0.13
30 15 0.29
31 23 0.44
32 7 0.13
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (30 bp):
AATATTAAATTAATAAAATATATTTAGATA
Found at i:119207729 original size:30 final size:30
Alignment explanation
Indices: 119207693--119207788 Score: 113
Period size: 30 Copynumber: 3.2 Consensus size: 30
119207683 TATTTAGATA
119207693 AATATTAAATTAAATTTAATATCTCATATT
1 AATATTAAATTAAATTTAATATCTCATATT
** * * *
119207723 AATATTAAATT-AATAAAATACCATCTAGATA
1 AATATTAAATTAAATTTAATATC-TC-ATATT
*
119207754 AATATTAAAATAAATTTAATATCTCATATT
1 AATATTAAATTAAATTTAATATCTCATATT
119207784 AATAT
1 AATAT
119207789 CTAGATGAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
29 8 0.15
30 21 0.40
31 15 0.29
32 8 0.15
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.41
Consensus pattern (30 bp):
AATATTAAATTAAATTTAATATCTCATATT
Found at i:119207788 original size:61 final size:61
Alignment explanation
Indices: 119207655--119207788 Score: 223
Period size: 61 Copynumber: 2.2 Consensus size: 61
119207645 CTAGAATTAA
* ** * *
119207655 TCATATTAATAATAAATTAATAAAATATTATTTAGATAAATATTAAATTAAATTTAATATC
1 TCATATTAATATTAAATTAATAAAATACCATCTAGATAAATATTAAAATAAATTTAATATC
119207716 TCATATTAATATTAAATTAATAAAATACCATCTAGATAAATATTAAAATAAATTTAATATC
1 TCATATTAATATTAAATTAATAAAATACCATCTAGATAAATATTAAAATAAATTTAATATC
119207777 TCATATTAATAT
1 TCATATTAATAT
119207789 CTAGATGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 68 1.00
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.41
Consensus pattern (61 bp):
TCATATTAATATTAAATTAATAAAATACCATCTAGATAAATATTAAAATAAATTTAATATC
Done.