Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 388 of 425
Found at i:119210790 original size:11 final size:12
Alignment explanation
Indices: 119210766--119210793 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
119210756 TTCGTTTTGC
119210766 TTCTTTGTTTTT
1 TTCTTTGTTTTT
119210778 TTCTTTGTTTTT
1 TTCTTTGTTTTT
119210790 TTCT
1 TTCT
119210794 ATTTCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.82
Consensus pattern (12 bp):
TTCTTTGTTTTT
Found at i:119215078 original size:32 final size:32
Alignment explanation
Indices: 119215030--119215093 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
119215020 TGCATATGTG
*
119215030 AATTTGCTTACTTATTTGGTTGTATGGAAGTT
1 AATTGGCTTACTTATTTGGTTGTATGGAAGTT
*
119215062 AATTGGCTTGCTTATTTGGTTGTATGGAAGTT
1 AATTGGCTTACTTATTTGGTTGTATGGAAGTT
119215094 GGTTGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.20, C:0.06, G:0.25, T:0.48
Consensus pattern (32 bp):
AATTGGCTTACTTATTTGGTTGTATGGAAGTT
Found at i:119220824 original size:26 final size:26
Alignment explanation
Indices: 119220793--119220900 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
119220783 TGAAATTCCC
*
119220793 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
119220819 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
119220845 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
119220871 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
119220897 ATCA
1 ATCA
119220901 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:119221330 original size:18 final size:18
Alignment explanation
Indices: 119221307--119221365 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
119221297 AGATCAAAAT
119221307 ATTTATAAAAATTCTAAA
1 ATTTATAAAAATTCTAAA
** *
119221325 ATTTAT--ATCTTTTAAA
1 ATTTATAAAAATTCTAAA
*
119221341 AATTATAAAAATTCTAAA
1 ATTTATAAAAATTCTAAA
*
119221359 ATATATA
1 ATTTATA
119221366 TATAAAGAAA
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
16 12 0.40
18 18 0.60
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTTATAAAAATTCTAAA
Found at i:119223781 original size:30 final size:29
Alignment explanation
Indices: 119223730--119223786 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 29
119223720 CACGGCCATA
*
119223730 ACACACGGCGTGTGGCCTACCCATGTGTC
1 ACACACGGCGTGTGGACTACCCATGTGTC
* * *
119223759 ACACACGGGCTTGTGGATTACCCGTGTG
1 ACACAC-GGCGTGTGGACTACCCATGTG
119223787 GAAGTGCCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 6 0.26
30 17 0.74
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.23
Consensus pattern (29 bp):
ACACACGGCGTGTGGACTACCCATGTGTC
Found at i:119225603 original size:14 final size:14
Alignment explanation
Indices: 119225584--119225611 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
119225574 TAGCCATAAA
119225584 GATAAATATAGTTT
1 GATAAATATAGTTT
119225598 GATAAATATAGTTT
1 GATAAATATAGTTT
119225612 AAAAGTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (14 bp):
GATAAATATAGTTT
Found at i:119227495 original size:29 final size:29
Alignment explanation
Indices: 119227463--119227565 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
119227453 GTGACGAGAT
* *
119227463 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
119227492 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* *
119227521 TGGCACTAAGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
119227550 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
119227566 TGATCGAGTA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.03
29 61 0.97
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:119229275 original size:20 final size:20
Alignment explanation
Indices: 119229250--119229301 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
119229240 CTACTAGTGT
*
119229250 GAGTGTCAAAGGCATCTTTG
1 GAGTGTCAAAGACATCTTTG
*
119229270 GAGTGTCGAAGACATCTTTG
1 GAGTGTCAAAGACATCTTTG
*
119229290 GAGTGTCGAAGA
1 GAGTGTCAAAGA
119229302 GGCCGAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (20 bp):
GAGTGTCAAAGACATCTTTG
Found at i:119238767 original size:20 final size:19
Alignment explanation
Indices: 119238725--119238768 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
119238715 GGTCACCTAC
*
119238725 TAAAACATTTTGTTCCACT
1 TAAAACATTTTGTTCCACG
119238744 TAAAACAATTTTGGTT-CACG
1 TAAAAC-ATTTT-GTTCCACG
119238764 TAAAA
1 TAAAA
119238769 TTAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 13 0.59
21 3 0.14
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (19 bp):
TAAAACATTTTGTTCCACG
Found at i:119239559 original size:2 final size:2
Alignment explanation
Indices: 119239552--119239590 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
119239542 TGAACACATA
119239552 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
119239591 AGTTGACAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:119244002 original size:9 final size:9
Alignment explanation
Indices: 119243977--119244007 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
119243967 TCATTGTGAA
119243977 AAATAAAAT
1 AAATAAAAT
119243986 AGAATAAAAT
1 A-AATAAAAT
119243996 AAATAAAAT
1 AAATAAAAT
119244005 AAA
1 AAA
119244008 GAACACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:119252464 original size:2 final size:2
Alignment explanation
Indices: 119252457--119252481 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
119252447 AATTTAGCCC
119252457 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
119252482 GTTTTTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:119252539 original size:3 final size:3
Alignment explanation
Indices: 119252517--119252611 Score: 56
Period size: 3 Copynumber: 31.7 Consensus size: 3
119252507 ACATCATAAA
* *
119252517 ATT ATT -TT ACT ATAT ATT ATT ATT ATT ATT ATTT ATT ATAT CTT ATT
1 ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT A-TT ATT AT-T ATT ATT
* ** *
119252564 GTT CACAA ATT ATT ATT ATT -TT A-C ATT ATT ATT -TT A-T ATT ATT
1 ATT -A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
119252607 ATT AT
1 ATT AT
119252612 ATCTTACTTG
Statistics
Matches: 70, Mismatches: 12, Indels: 20
0.69 0.12 0.20
Matches are distributed among these distances:
2 9 0.13
3 52 0.74
4 9 0.13
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:119252554 original size:13 final size:14
Alignment explanation
Indices: 119252517--119252631 Score: 60
Period size: 13 Copynumber: 8.1 Consensus size: 14
119252507 ACATCATAAA
*
119252517 ATTATTTTACTATAT
1 ATTA-TTTATTATAT
119252532 ATTA-TTATTAT-T
1 ATTATTTATTATAT
119252544 ATTATTTATTATAT
1 ATTATTTATTATAT
* * * *
119252558 CTTATTGT-TCACAA
1 ATTATT-TATTATAT
* *
119252572 ATTATTATTATTTTAC
1 ATTA-T-TTATTATAT
*
119252588 ATTA-TTATTTTAT
1 ATTATTTATTATAT
119252601 ATTA-TTATTATAT
1 ATTATTTATTATAT
*
119252614 CTTACTTGTATTATAT
1 ATTA-TT-TATTATAT
119252630 AT
1 AT
119252632 CTATATACAT
Statistics
Matches: 77, Mismatches: 14, Indels: 17
0.71 0.13 0.16
Matches are distributed among these distances:
12 5 0.06
13 36 0.47
14 12 0.16
15 8 0.10
16 16 0.21
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (14 bp):
ATTATTTATTATAT
Found at i:119252800 original size:12 final size:11
Alignment explanation
Indices: 119252783--119252824 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
119252773 ATATATAACA
119252783 TATATTATCTAT
1 TATATTAT-TAT
119252795 TATATTA-T-T
1 TATATTATTAT
119252804 TATATTATTCAT
1 TATATTATT-AT
119252816 TATATTATT
1 TATATTATT
119252825 TAAAATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.30
10 2 0.07
12 17 0.63
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (11 bp):
TATATTATTAT
Found at i:119252807 original size:21 final size:21
Alignment explanation
Indices: 119252783--119252826 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
119252773 ATATATAACA
119252783 TATATTA-TCTATTATATTATT
1 TATATTATTC-ATTATATTATT
119252804 TATATTATTCATTATATTATT
1 TATATTATTCATTATATTATT
119252825 TA
1 TA
119252827 AAATTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (21 bp):
TATATTATTCATTATATTATT
Found at i:119253030 original size:23 final size:23
Alignment explanation
Indices: 119252987--119253032 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
119252977 TTTTAAACTC
*
119252987 AATATATTTATTATTCTTTTATA
1 AATATATTTATTATTATTTTATA
*
119253010 AATAT-TTTGTTATTATGTTTATA
1 AATATATTTATTATTAT-TTTATA
119253033 TATTGTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (23 bp):
AATATATTTATTATTATTTTATA
Found at i:119253159 original size:2 final size:2
Alignment explanation
Indices: 119253118--119253150 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
119253108 TCATTTCATT
119253118 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119253151 TGCATATATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:119253300 original size:32 final size:29
Alignment explanation
Indices: 119253237--119253293 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
119253227 GTAGTACTCT
*
119253237 TTTTTGTATGTCATGCATTATTTTATTAC
1 TTTTTGTATATCATGCATTATTTTATTAC
*
119253266 TTTTTGTATATCATGCATTATTTAATTA
1 TTTTTGTATATCATGCATTATTTTATTA
119253294 TTACTTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.58
Consensus pattern (29 bp):
TTTTTGTATATCATGCATTATTTTATTAC
Found at i:119256872 original size:14 final size:14
Alignment explanation
Indices: 119256853--119256879 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
119256843 AAGATATTCT
119256853 TTTTCTAAATAAAA
1 TTTTCTAAATAAAA
119256867 TTTTCTAAATAAA
1 TTTTCTAAATAAA
119256880 GTTGAACCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (14 bp):
TTTTCTAAATAAAA
Found at i:119256940 original size:15 final size:15
Alignment explanation
Indices: 119256904--119256953 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
119256894 GATATTCTTT
119256904 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
119256918 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
119256934 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
119256947 TTTGCAT
1 TTTGCAT
119256954 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:119265321 original size:210 final size:210
Alignment explanation
Indices: 119264952--119265754 Score: 1095
Period size: 210 Copynumber: 3.8 Consensus size: 210
119264942 TAAGCTGCAG
* *
119264952 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCGAAGATGGCAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* *
119265017 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACA
66 TGTATTCGGCGAGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAACA
* * * * * *
119265082 AATCTAAGATGATTTGTCGTCTTTGTATTGTCAGAGAACAAATCGAAGTTTGGCATTTCCACTTT
131 AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTC
*
119265147 GATAGA-AGGCAGACA
196 AATAGAGA-GCAGACA
**
119265162 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATTGAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
*
119265227 TGTATTCGGCGAGGAGTAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAACA
66 TGTATTCGGCGAGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAACA
*
119265292 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTC
131 AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTC
119265357 AATAGAGAGCAGACA
196 AATAGAGAGCAGACA
*
119265372 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATTTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * **
119265437 TGTATTCGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCGCGTGTTTACGATGAAGTA
66 TGTATTCGGCGAGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAACA
* * **
119265502 AATCTAAGATGATTTGTCATCTTTGTATTGTCAGAGAACAAATCAAAGTCTACCATCTCTACTTC
131 AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTC
*
119265567 AATAGAGAGCAGATA
196 AATAGAGAGCAGACA
* * * * * ** *
119265582 CATAGCAGATTTGACCTTCAGACGATTA-GACTGAAACAAGATCCAAGATGATTTG-GC--ATC-
1 CATAGCAGATCTCACCTTCAGATGTTTACG-CTGAAGC-AGATCCAAGATGA-CAGATCTTATCT
* * * * * * * * *
119265642 CT-TGTGCTT--ACAAGGAGCAAATCGAAGACATAGCTGATTT-AGTTTTCACGAGCTTATGATG
63 CTCTGT-ATTCGGCGAGGAGCAGATCGAAGATATAGCTGATTTGA-CTTTCACGTGTTTACGATG
*
119265703 AAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAA
126 AAACAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAA
119265755 TAAGCAGATT
Statistics
Matches: 539, Mismatches: 48, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
205 1 0.00
206 89 0.17
207 3 0.01
208 4 0.01
209 3 0.01
210 423 0.78
211 15 0.03
212 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (210 bp):
CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
TGTATTCGGCGAGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAACA
AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTC
AATAGAGAGCAGACA
Found at i:119267358 original size:2 final size:2
Alignment explanation
Indices: 119267345--119267385 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
119267335 AATTTAGCCC
*
119267345 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119267386 GTGTGTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:119267497 original size:13 final size:13
Alignment explanation
Indices: 119267479--119267513 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
119267469 TTCACAAATT
119267479 ATTATTATTTTAC
1 ATTATTATTTTAC
*
119267492 ATTATTATTTTAT
1 ATTATTATTTTAC
119267505 ATTATTATT
1 ATTATTATT
119267514 ATATCTTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (13 bp):
ATTATTATTTTAC
Found at i:119267594 original size:30 final size:31
Alignment explanation
Indices: 119267560--119267632 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 31
119267550 CTTACATATA
*
119267560 TATATTTTCGTTATTT-TATAT-TATATCAAT
1 TATATTTTC-TTATTTCTATATATATATAAAT
*
119267590 TATA-TTTCTTATTTCTATATATATTTAAAT
1 TATATTTTCTTATTTCTATATATATATAAAT
*
119267620 TATATTTTATTAT
1 TATATTTTCTTAT
119267633 ACGACATTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 6 0.16
29 9 0.24
30 15 0.41
31 7 0.19
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (31 bp):
TATATTTTCTTATTTCTATATATATATAAAT
Found at i:119268079 original size:2 final size:2
Alignment explanation
Indices: 119268032--119268068 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
119268022 TCATTTCATT
*
119268032 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119268069 TTTGCATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:119268093 original size:14 final size:13
Alignment explanation
Indices: 119268031--119268093 Score: 56
Period size: 14 Copynumber: 4.6 Consensus size: 13
119268021 CTCATTTCAT
*
119268031 TTATACATATATA
1 TTATATATATATA
119268044 -TATATATATATA
1 TTATATATATATA
*
119268056 TATATATATATATT
1 T-TATATATATATA
*
119268070 TTGCATATATCATATG
1 TT--ATATAT-ATATA
119268086 TTATATAT
1 TTATATAT
119268094 TATCTTATCT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
12 11 0.26
13 1 0.02
14 18 0.43
15 6 0.14
16 6 0.14
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (13 bp):
TTATATATATATA
Found at i:119272654 original size:8 final size:8
Alignment explanation
Indices: 119272641--119272670 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
119272631 ACCTATTAAA
119272641 TTTTTTTC
1 TTTTTTTC
119272649 TTTTTTTC
1 TTTTTTTC
119272657 -TTTTTTC
1 TTTTTTTC
119272664 TTTTTTT
1 TTTTTTT
119272671 TTTATAATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTTC
Found at i:119272662 original size:15 final size:15
Alignment explanation
Indices: 119272642--119272670 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
119272632 CCTATTAAAT
119272642 TTTTTTCTTTTTTTC
1 TTTTTTCTTTTTTTC
119272657 TTTTTTCTTTTTTT
1 TTTTTTCTTTTTTT
119272671 TTTATAATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTCTTTTTTTC
Found at i:119281636 original size:25 final size:25
Alignment explanation
Indices: 119281581--119281662 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
119281571 CACAAGGGCC
** * * *
119281581 ACAGAATATGCCACAAGGGCAACTT
1 ACAGAATACACCACAAAGGCATCAT
* *
119281606 ATAGAATACACCACAAAGGTATCAT
1 ACAGAATACACCACAAAGGCATCAT
* * *
119281631 TCAGAATACGCCACGAAGGCATCAT
1 ACAGAATACACCACAAAGGCATCAT
119281656 ACAGAAT
1 ACAGAAT
119281663 CATGTATTTA
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (25 bp):
ACAGAATACACCACAAAGGCATCAT
Found at i:119290518 original size:19 final size:19
Alignment explanation
Indices: 119290496--119290558 Score: 60
Period size: 19 Copynumber: 3.2 Consensus size: 19
119290486 AAATGACATG
119290496 AAAATATAAAAAATAATAT
1 AAAATATAAAAAATAATAT
119290515 AAAATA-AAGAAAATAATA-
1 AAAATATAA-AAAATAATAT
119290533 AATAATAATAAAGATAATAA-AT
1 AA-AAT-ATAAA-A-AATAATAT
119290555 AAAA
1 AAAA
119290559 AATTACGCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
18 4 0.11
19 18 0.49
20 2 0.05
21 6 0.16
22 7 0.19
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (19 bp):
AAAATATAAAAAATAATAT
Found at i:119290520 original size:10 final size:9
Alignment explanation
Indices: 119290481--119290553 Score: 60
Period size: 9 Copynumber: 7.7 Consensus size: 9
119290471 TTAAAAGATA
119290481 AATAAAAAT
1 AATAAAAAT
*
119290490 GACATGAAAAT
1 -A-ATAAAAAT
119290501 -ATAAAAAAT
1 AAT-AAAAAT
119290510 AATATAAAAT
1 AATA-AAAAT
119290520 AA-AGAAAAT
1 AATA-AAAAT
119290529 AATAAATAAT
1 AATAAA-AAT
*
119290539 AATAAAGAT
1 AATAAAAAT
119290548 AATAAA
1 AATAAA
119290554 TAAAAAATTA
Statistics
Matches: 53, Mismatches: 4, Indels: 13
0.76 0.06 0.19
Matches are distributed among these distances:
8 2 0.04
9 24 0.45
10 20 0.38
11 7 0.13
ACGTcount: A:0.71, C:0.01, G:0.05, T:0.22
Consensus pattern (9 bp):
AATAAAAAT
Found at i:119290530 original size:26 final size:26
Alignment explanation
Indices: 119290496--119290561 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
119290486 AAATGACATG
*
119290496 AAAATATAAAAAATAAT-ATAAA-AT
1 AAAAAATAAAAAATAATAATAAAGAT
*
119290520 AAAGAAAATAATAAATAATAATAAAGAT
1 -AA-AAAATAAAAAATAATAATAAAGAT
*
119290548 AATAAATAAAAAAT
1 AAAAAATAAAAAAT
119290562 TACGCAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
25 2 0.06
26 23 0.68
27 7 0.21
28 2 0.06
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (26 bp):
AAAAAATAAAAAATAATAATAAAGAT
Found at i:119299478 original size:40 final size:40
Alignment explanation
Indices: 119299423--119299503 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
119299413 TCCTCTAGGG
119299423 TGTATTTATAGGCTTTGGAATGCCTAAGAGCCCTCAAAAT
1 TGTATTTATAGGCTTTGGAATGCCTAAGAGCCCTCAAAAT
119299463 TGTATTTATAGGCTTTGGAATGCCTAAGAGCCCTCAAAAT
1 TGTATTTATAGGCTTTGGAATGCCTAAGAGCCCTCAAAAT
119299503 T
1 T
119299504 AGCCTTTTCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (40 bp):
TGTATTTATAGGCTTTGGAATGCCTAAGAGCCCTCAAAAT
Found at i:119299521 original size:40 final size:40
Alignment explanation
Indices: 119299437--119299521 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
119299427 TTTATAGGCT
* * **
119299437 TTGGAATGCCTAAGAGCCCTCAAAATTGTATTTATAGGCT
1 TTGGAATGCCTAAGAGCCCTCAAAATTGCATTTATACGAA
* *
119299477 TTGGAATGCCTAAGAGCCCTCAAAATTAGCCTTT-TCCGAA
1 TTGGAATGCCTAAGAGCCCTCAAAATT-GCATTTATACGAA
119299517 TTGGA
1 TTGGA
119299522 CTGAACTTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 34 0.89
41 4 0.11
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGGAATGCCTAAGAGCCCTCAAAATTGCATTTATACGAA
Found at i:119306353 original size:2 final size:2
Alignment explanation
Indices: 119306346--119306384 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
119306336 TTAAACAGTT
119306346 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119306385 TATTTATCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:119311637 original size:20 final size:21
Alignment explanation
Indices: 119311614--119311691 Score: 60
Period size: 20 Copynumber: 4.0 Consensus size: 21
119311604 TATGTAAAAA
*
119311614 TTATTATAT-ATTATA-TCTTT
1 TTATTAT-TCATTATATTATTT
119311634 TTATTATTCATTATATTATTT
1 TTATTATTCATTATATTATTT
* * *
119311655 TTATT-TT-ACTATGTCA-TT
1 TTATTATTCATTATATTATTT
*
119311673 TTATTATTAATTAT-TTATT
1 TTATTATTCATTATATTATT
119311692 ATGTATAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
18 7 0.15
19 11 0.23
20 20 0.43
21 9 0.19
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.65
Consensus pattern (21 bp):
TTATTATTCATTATATTATTT
Found at i:119311689 original size:27 final size:27
Alignment explanation
Indices: 119311620--119311695 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
119311610 AAAATTATTA
119311620 TATATTA-TATCT-TTTTATTAT-TCAT
1 TATATTATTAT-TATTTTATTATGTCAT
* *
119311645 TATATTATTTTTATTTTACTATGTCAT
1 TATATTATTATTATTTTATTATGTCAT
*
119311672 TTTATTATTAATTA-TTTATTATGT
1 TATATTATT-ATTATTTTATTATGT
119311696 ATAATTTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
25 8 0.19
26 10 0.24
27 21 0.50
28 3 0.07
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (27 bp):
TATATTATTATTATTTTATTATGTCAT
Found at i:119327304 original size:45 final size:44
Alignment explanation
Indices: 119327255--119327836 Score: 264
Period size: 45 Copynumber: 13.2 Consensus size: 44
119327245 GTAGATCACT
* *
119327255 GATAGCAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAA
1 GATAGCAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAA
* * * * *
119327300 GATAGCAGATCTGACA-CTCATGTGTTTACATC-GAAG-AGATCGAA
1 GATAGCAGATTTGGCATCTC-TGT-ATTAGA-CGGGAGCAGATCGAA
*
119327344 GAT-GACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAA
1 GATAG-CAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAA
* * * * *
119327389 GATAGCAGATCTGACAT-TCGTGTGTTTACATC-GAAGCAGATCGAA
1 GATAGCAGATTTGGCATCTC-TGT-ATTAGA-CGGGAGCAGATCGAA
**
119327434 GAT-GACAGATTTGGCATCTCTGTATTAGACGGGGGATTAGATCGAA
1 GATAG-CAGATTTGGCATCTCTGTATTAGAC--GGGAGCAGATCGAA
* * ** * * *
119327480 GATAGAAGATCTAACAT-TCATGTGTTTACATC-GAAGCAGATCGAA
1 GATAGCAGATTTGGCATCTC-TGT-ATTAGA-CGGGAGCAGATCGAA
* * * *
119327525 GATAACATATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAA
1 GATAGCAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAA
* *
119327570 GATAGCAGATTT-G-A---C---ATT---C-GAAGCAGATCAAA
1 GATAGCAGATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAA
* * *
119327602 GATAACAGATTTGGCGTCTTTGTATTAGACAGGGAGCAGATCGAA
1 GATAGCAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAA
* ** * * * *
119327647 GATAGCAGATCTAACATTCGTATGT-TTACATC-GAAGTAGATCGAA
1 GATAGCAGATTTGGCA-TC-TCTGTATTAGA-CGGGAGCAGATCGAA
* * * *
119327692 GAT-GACAGATTTGGCGTCTCTGTAATAGATGGGGAGCAGATCAAA
1 GATAG-CAGATTTGGCATCTCTGTATTAGA-CGGGAGCAGATCGAA
* * * * * * * *
119327737 GAAAACAGATCTGACAT-TCGTGTGTTTACATC-GAAGTAGATCGAA
1 GATAGCAGATTTGGCATCTC-TGT-ATTAGA-CGGGAGCAGATCGAA
* *
119327782 GAT-GACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAG
1 GATAG-CAGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAA
119327827 GATAGCAGAT
1 GATAGCAGAT
119327837 CTGTAACACC
Statistics
Matches: 389, Mismatches: 97, Indels: 102
0.66 0.16 0.17
Matches are distributed among these distances:
32 23 0.06
33 1 0.00
34 1 0.00
37 3 0.01
40 4 0.01
42 1 0.00
43 13 0.03
44 53 0.14
45 227 0.58
46 50 0.13
47 12 0.03
48 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (44 bp):
GATAGCAGATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAA
Found at i:119327511 original size:91 final size:90
Alignment explanation
Indices: 119327260--119327588 Score: 516
Period size: 91 Copynumber: 3.7 Consensus size: 90
119327250 TCACTGATAG
* *
119327260 CAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACACTCATGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGT
119327325 TTACATCGAAG-AGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* *
119327349 CAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGT
119327414 TTACATCGAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* ** * *
119327439 CAGATTTGGCATCTCTGTATTAGACGGGGGATTAGATCGAAGATAGAAGATCTAACATTCATGTG
1 CAGATTTGGCGTCTCTGTATTAGAC-GGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTG
*
119327504 TTTACATCGAAGCAGATCGAAGATAA
65 TTTACATCGAAGCAGATCGAAGATGA
* * * *
119327530 CATATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAGCAGATTTGACATTC
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTC
119327589 GAAGCAGATC
Statistics
Matches: 217, Mismatches: 21, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
89 72 0.33
90 64 0.29
91 81 0.37
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (90 bp):
CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGT
TTACATCGAAGCAGATCGAAGATGA
Found at i:119327591 original size:77 final size:77
Alignment explanation
Indices: 119327510--119327666 Score: 260
Period size: 77 Copynumber: 2.0 Consensus size: 77
119327500 TGTGTTTACA
* *
119327510 TCGAAGCAGATCGAAGATAACATATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAG
1 TCGAAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAG
* *
119327575 CAGATTTGACAT
66 CAGATCTAACAT
* *
119327587 TCGAAGCAGATCAAAGATAACAGATTTGGCGTCTTTGTATTAGACAGGGAGCAGATCGAAGATAG
1 TCGAAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAG
119327652 CAGATCTAACAT
66 CAGATCTAACAT
119327664 TCG
1 TCG
119327667 TATGTTTACA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (77 bp):
TCGAAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAG
CAGATCTAACAT
Found at i:119327675 original size:167 final size:168
Alignment explanation
Indices: 119327419--119327756 Score: 498
Period size: 167 Copynumber: 2.0 Consensus size: 168
119327409 TGTGTTTACA
* * * **
119327419 TCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGGATTAGATCGAAGATA
1 TCGAAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGAGGGAGCAGATCGAAGATA
* *
119327484 GAAGATCTAACATTCATGTGTTTACATCGAAGCAGATCGAAGATAACATATTTGGCGTCTCTGTA
66 GAAGATCTAACATTCATATGTTTACATCGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
* * * *
119327549 TTAGACAGGGAGCAGATCAAAGATAGCAGATTTGACAT
131 ATAGACAGGGAGCAGATCAAAGAAAACAGATCTGACAT
* *
119327587 TCGAAGCAGATCAAAGATAACAGATTTGGCGTCTTTGTATTAGAC-AGGGAGCAGATCGAAGATA
1 TCGAAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGAGGGAGCAGATCGAAGATA
* * * *
119327651 GCAGATCTAACATTCGTATGTTTACATCGAAGTAGATCGAAGATGACAGATTTGGCGTCTCTGTA
66 GAAGATCTAACATTCATATGTTTACATCGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
**
119327716 ATAGATGGGGAGCAGATCAAAGAAAACAGATCTGACAT
131 ATAGACAGGGAGCAGATCAAAGAAAACAGATCTGACAT
119327754 TCG
1 TCG
119327757 TGTGTTTACA
Statistics
Matches: 151, Mismatches: 19, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
167 110 0.73
168 41 0.27
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.25
Consensus pattern (168 bp):
TCGAAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGAGGGAGCAGATCGAAGATA
GAAGATCTAACATTCATATGTTTACATCGAAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTA
ATAGACAGGGAGCAGATCAAAGAAAACAGATCTGACAT
Found at i:119327839 original size:90 final size:90
Alignment explanation
Indices: 119327587--119327839 Score: 389
Period size: 90 Copynumber: 2.8 Consensus size: 90
119327577 GATTTGACAT
* * * * *
119327587 TCGAAGCAGATCAAAGATAACAGATTTGGCGTCTTTGTATTAGACAGGGAGCAGATCGAAGATAG
1 TCGAAGTAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAG
*
119327652 CAGATCTAACATTCGTATGTTTACA
66 CAGATCTGACATTCGTATGTTTACA
* * * * *
119327677 TCGAAGTAGATCGAAGATGACAGATTTGGCGTCTCTGTAATAGATGGGGAGCAGATCAAAGAAAA
1 TCGAAGTAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAG
*
119327742 CAGATCTGACATTCGTGTGTTTACA
66 CAGATCTGACATTCGTATGTTTACA
*
119327767 TCGAAGTAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAGGATAG
1 TCGAAGTAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAG
119327832 CAGATCTG
66 CAGATCTG
119327840 TAACACCCCA
Statistics
Matches: 145, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 145 1.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.25
Consensus pattern (90 bp):
TCGAAGTAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAG
CAGATCTGACATTCGTATGTTTACA
Found at i:119340318 original size:20 final size:19
Alignment explanation
Indices: 119340295--119340367 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
119340285 TATGTAAAAA
119340295 TTATTATATATTATATCTTT
1 TTATTAT-TATTATATCTTT
*
119340315 TTATTATTCATTATATTATTT
1 TTATTATT-ATTATA-TCTTT
* *
119340336 TTATT-TTACTATATCATT
1 TTATTATTATTATATCTTT
119340354 TTATTATTAATTAT
1 TTATTATT-ATTAT
119340368 TTATTATGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 8 0.18
19 8 0.18
20 19 0.43
21 9 0.20
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATTATTATTATATCTTT
Found at i:119340354 original size:19 final size:21
Alignment explanation
Indices: 119340306--119340361 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 21
119340296 TATTATATAT
*
119340306 TATATC-TTTTTATTATTCAT
1 TATATCATTTTTATTATTCAC
*
119340326 TATATTATTTTTATT-TT-AC
1 TATATCATTTTTATTATTCAC
119340345 TATATCA-TTTTATTATT
1 TATATCATTTTTATTATT
119340362 AATTATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 7 0.23
19 9 0.29
20 7 0.23
21 8 0.26
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (21 bp):
TATATCATTTTTATTATTCAC
Found at i:119340370 original size:27 final size:26
Alignment explanation
Indices: 119340301--119340369 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 26
119340291 AAAATTATTA
*
119340301 TATATTA-TATCT-TTTTATTATTCAT
1 TATATTATTAT-TATTTTACTATTCAT
*
119340326 TATATTATTTTTATTTTACTATATCAT
1 TATATTATTATTATTTTACTAT-TCAT
*
119340353 TTTATTATTAATTATTT
1 TATATTATT-ATTATTT
119340370 ATTATGTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 8 0.22
26 10 0.28
27 12 0.33
28 6 0.17
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (26 bp):
TATATTATTATTATTTTACTATTCAT
Found at i:119343499 original size:356 final size:354
Alignment explanation
Indices: 119342743--119343419 Score: 1066
Period size: 356 Copynumber: 1.9 Consensus size: 354
119342733 TCAGCCACCA
* * *
119342743 CTTTTAGAAAAAGAAACCACGATGCTCTTTATCAATACTTTAAAGGCCCCGTTCATTACTCACAT
1 CTTTTAGAAAAAGAAACCACGATGCCCCTTAT--ATACTTTAAAGGCCCCATTCATTACTCACAT
* * *
119342808 GCTAGGAAGTGCCACAAGAAGCTTTTCAAACGTGGTAATGATTGGAGAAATTATTGATAATGCAA
64 GCTAGGAAGCGCCACAAGAAGCTTCTCAAACGTGGTAATGATTGGAGAAATTATTGAGAATGCAA
*
119342873 TAAGAAGTGGAAGGATAGAGGCAGGAGAAAATTTCAAAAAGTTGGCCCCGCAAAAAAAGGAAAAC
129 TAAGAAGTGAAAGGATAGAGGCAGGAGAAAATTTCAAAAAGTTGGCCCCGCAAAAAAAGGAAAAC
119342938 GAGGTGAACAATACAAACATGGGTACTCAAAATCAGTTACTGTAAGCCAACCAAGAGCGGTGGCT
194 GAGGTGAACAATACAAACATGGGTACTCAAAATCAGTTACTGTAAGCCAACCAAGAGCGGTGGCT
*
119343003 GCTGGTTAGGGCTCATCAAGACAAGAATCTAGTGTGAAGTAAATGTTGAGAAACTCCAAAAGATG
259 GCTGGTTAGGGCTCATCAAGACAAGAATCTAGTGTGAAGTAAATGTTGAGAAACTCCAAAAGACG
* *** * * ** **
119343068 GAGGGAAGTGGCCATCCAGGTTCAGCCACCG
324 AACCCAAGTGGACATACAGGAGCAGCCAAAG
* *
119343099 CTTTTAGAAAAAGAAACCACGATGCTCTTTATCAATACTTTAAAGGCCCCATTCATTACTCACAT
1 CTTTTAGAAAAAGAAACCACGATGCCCCTTAT--ATACTTTAAAGGCCCCATTCATTACTCACAT
* *
119343164 GCTGGGAAGCGCCACAAGAAGCTTCTCAAACGTGGTAATGATTGGCGAAATTATTGAGAATGCAA
64 GCTAGGAAGCGCCACAAGAAGCTTCTCAAACGTGGTAATGATTGGAGAAATTATTGAGAATGCAA
* *
119343229 TAAGAAGTGAAAGGATAGAGGCAGGGGAAAATTTCAAAAAGTTGGCCCCGCGAAAAAAGGAAAAC
129 TAAGAAGTGAAAGGATAGAGGCAGGAGAAAATTTCAAAAAGTTGGCCCCGCAAAAAAAGGAAAAC
119343294 GAGGTGAACAATACAAACATGGGGTACTCAAAATCAGTTACTGTAAGCCAACCAAGAGCGGTGGC
194 GAGGTGAACAATACAAACAT-GGGTACTCAAAATCAGTTACTGTAAGCCAACCAAGAGCGGTGGC
* *
119343359 TGCTGGTTAGGGCTCATCAAGACAAGAATCTGGTGTGAAGTAAAATGTTGAGAAGCTCCAA
258 TGCTGGTTAGGGCTCATCAAGACAAGAATCTAGTGTGAAGT-AAATGTTGAGAAACTCCAA
119343420 TTTACGCCAA
Statistics
Matches: 308, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
356 206 0.67
357 84 0.27
358 18 0.06
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (354 bp):
CTTTTAGAAAAAGAAACCACGATGCCCCTTATATACTTTAAAGGCCCCATTCATTACTCACATGC
TAGGAAGCGCCACAAGAAGCTTCTCAAACGTGGTAATGATTGGAGAAATTATTGAGAATGCAATA
AGAAGTGAAAGGATAGAGGCAGGAGAAAATTTCAAAAAGTTGGCCCCGCAAAAAAAGGAAAACGA
GGTGAACAATACAAACATGGGTACTCAAAATCAGTTACTGTAAGCCAACCAAGAGCGGTGGCTGC
TGGTTAGGGCTCATCAAGACAAGAATCTAGTGTGAAGTAAATGTTGAGAAACTCCAAAAGACGAA
CCCAAGTGGACATACAGGAGCAGCCAAAG
Found at i:119345126 original size:16 final size:16
Alignment explanation
Indices: 119345105--119345135 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
119345095 GCAAGATTCC
*
119345105 GGTGCCGAAATTATCA
1 GGTGCCAAAATTATCA
119345121 GGTGCCAAAATTATC
1 GGTGCCAAAATTATC
119345136 CAAAGCTACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (16 bp):
GGTGCCAAAATTATCA
Found at i:119349456 original size:63 final size:64
Alignment explanation
Indices: 119349353--119349477 Score: 200
Period size: 63 Copynumber: 2.0 Consensus size: 64
119349343 AAGGAAAGAT
*
119349353 GCCAAAGTGAAAACCCACAAAGGGCTCTTTGAGACCTTCAAAAAAAA-AAGAAA-AAAAAATAGG
1 GCCAAAGTGAAAACCCACAAAGGGCACTTTGAGACCTTCAAAAAAAATAA-AAATAAAAAATAGG
* *
119349416 GCCAAAGTGAAAACCTACAAAGGGCACTTTGAGACTTTCAAAAAAAATAAAAATAAAAAATA
1 GCCAAAGTGAAAACCCACAAAGGGCACTTTGAGACCTTCAAAAAAAATAAAAATAAAAAATA
119349478 AAAAGATAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
63 47 0.82
64 10 0.18
ACGTcount: A:0.54, C:0.16, G:0.15, T:0.15
Consensus pattern (64 bp):
GCCAAAGTGAAAACCCACAAAGGGCACTTTGAGACCTTCAAAAAAAATAAAAATAAAAAATAGG
Found at i:119349474 original size:7 final size:7
Alignment explanation
Indices: 119349457--119349489 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
119349447 AGACTTTCAA
119349457 AAAAAAT
1 AAAAAAT
119349464 -AAAAAT
1 AAAAAAT
119349470 AAAAAAT
1 AAAAAAT
119349477 AAAAAGAT
1 AAAAA-AT
119349485 AAAAA
1 AAAAA
119349490 TGAAAGGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:119349488 original size:13 final size:13
Alignment explanation
Indices: 119349457--119349490 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
119349447 AGACTTTCAA
*
119349457 AAAAAATAAAAAT
1 AAAAAATAAAAAG
119349470 AAAAAATAAAAAG
1 AAAAAATAAAAAG
119349483 ATAAAAAT
1 A-AAAAAT
119349491 GAAAGGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (13 bp):
AAAAAATAAAAAG
Found at i:119350816 original size:44 final size:45
Alignment explanation
Indices: 119350768--119351180 Score: 147
Period size: 44 Copynumber: 9.2 Consensus size: 45
119350758 AGCCACTAGC
* *
119350768 CTTATC-TCACTGAGGTAGCAAGCGAGCAGGCTAATGATTGTAG-T
1 CTTATCTTC-CTGAGGTAGCAAGCGAGCAGACTAAAGATTGTAGAT
*
119350812 CTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAAGATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAGCGAGCAGACTAAAGATTGTAGAT
* ** * * * **
119350857 CTTGT-TTCCCTGAAATAG-AAGTGGAGTAGA-TCGAAGA-TGGCGAAT
1 CTTATCTT-CCTGAGGTAGCAAG-CGAGCAGACT-AAAGATTGTAG-AT
* * * * * * ** **** *
119350902 CTTATCTTCCCGAGGTAGCAGGGGAGTAAATTTTAGCCACTAG-C
1 CTTATCTTCCTGAGGTAGCAAGCGAGCAGACTAAAGATTGTAGAT
* * * *
119350946 CTTATC-TCTCTGAGGTAGCAAGGGAGTAGGCTAATGATTGTAG-T
1 CTTATCTTC-CTGAGGTAGCAAGCGAGCAGACTAAAGATTGTAGAT
* *
119350990 CTTATCTTCTTGAGGTAGCAAGGGAGCAGACTGATGATTCAGATTGTAG-T
1 CTTATCTTCCTGAGGTAGCAAGCGAGCAGACT-A--A---AGATTGTAGAT
* * * * *
119351040 CTCATCTTCCTGAGGTAGCAAGGGAACAGACTGATGA-TGTAGAT
1 CTTATCTTCCTGAGGTAGCAAGCGAGCAGACTAAAGATTGTAGAT
* * * * * *
119351084 CTTGTC-TCCTTGAGATAGC-AGTGGGGCAGATCGAAA-A-TGGAGAGT
1 CTTATCTTCC-TGAGGTAGCAAG-CGAGCAGA-CTAAAGATTGTAGA-T
* * * * *
119351129 CTTATCTTCTTAAGGTAGTAAAG-GAGCAGACTGAACATTGTAGAT
1 CTTATCTTCCTGAGGTAG-CAAGCGAGCAGACTAAAGATTGTAGAT
119351174 CTTATCT
1 CTTATCT
119351181 CCCTAAGCAG
Statistics
Matches: 277, Mismatches: 64, Indels: 55
0.70 0.16 0.14
Matches are distributed among these distances:
43 12 0.04
44 130 0.47
45 80 0.29
46 13 0.05
47 4 0.01
50 38 0.14
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (45 bp):
CTTATCTTCCTGAGGTAGCAAGCGAGCAGACTAAAGATTGTAGAT
Found at i:119351056 original size:50 final size:50
Alignment explanation
Indices: 119350981--119351077 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 50
119350971 GTAGGCTAAT
* * *
119350981 GATTGTAGTCTTATCTTCTTGAGGTAGCAAGGGAGCAGACTGATGATTCA
1 GATTGTAGTCTCATCTTCCTGAGGTAGCAAGGGAACAGACTGATGATTCA
119351031 GATTGTAGTCTCATCTTCCTGAGGTAGCAAGGGAACAGACTGATGAT
1 GATTGTAGTCTCATCTTCCTGAGGTAGCAAGGGAACAGACTGATGAT
119351078 GTAGATCTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (50 bp):
GATTGTAGTCTCATCTTCCTGAGGTAGCAAGGGAACAGACTGATGATTCA
Found at i:119352858 original size:27 final size:27
Alignment explanation
Indices: 119352828--119352884 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
119352818 TATACCATTC
* *
119352828 ATTTTAAATTATTTTTATATATTATTT
1 ATTTTAAATTATTTTAATATAATATTT
** *
119352855 ATTTTAGCTTGTTTTAATATAATATTT
1 ATTTTAAATTATTTTAATATAATATTT
119352882 ATT
1 ATT
119352885 AAAGTTTGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (27 bp):
ATTTTAAATTATTTTAATATAATATTT
Found at i:119352893 original size:27 final size:27
Alignment explanation
Indices: 119352839--119352897 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
119352829 TTTTAAATTA
* * **
119352839 TTTTTATATATTATTTATTTTAGCTTG
1 TTTTAATATAATATTTATTAAAGCTTG
*
119352866 TTTTAATATAATATTTATTAAAGTTTG
1 TTTTAATATAATATTTATTAAAGCTTG
119352893 TTTTA
1 TTTTA
119352898 CTATTTATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.63
Consensus pattern (27 bp):
TTTTAATATAATATTTATTAAAGCTTG
Found at i:119352945 original size:2 final size:2
Alignment explanation
Indices: 119352938--119352980 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
119352928 CATCATTGGT
119352938 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119352980 T
1 T
119352981 TGTTTAATTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:119354844 original size:24 final size:24
Alignment explanation
Indices: 119354816--119354861 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
119354806 CTATTAAAAT
119354816 GTGATTGATAATTAATCATTAACG
1 GTGATTGATAATTAATCATTAACG
* *
119354840 GTGATTGGTTATTAATCATTAA
1 GTGATTGATAATTAATCATTAA
119354862 TATTTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (24 bp):
GTGATTGATAATTAATCATTAACG
Found at i:119360208 original size:31 final size:29
Alignment explanation
Indices: 119360149--119360208 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
119360139 CAACAAAAAC
* *
119360149 CAGCAAATATAGCATGAAATGCAACCAAA
1 CAGCAAATATAGCATAAAATACAACCAAA
*
119360178 CAGCAAATTTAGCATACAAAATACAACCAAA
1 CAGCAAATATAGCAT--AAAATACAACCAAA
119360209 AACATAAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 14 0.54
31 12 0.46
ACGTcount: A:0.53, C:0.22, G:0.10, T:0.15
Consensus pattern (29 bp):
CAGCAAATATAGCATAAAATACAACCAAA
Found at i:119360480 original size:21 final size:21
Alignment explanation
Indices: 119360456--119360495 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
119360446 CTGCTATCTT
*
119360456 TGCCTCCCTCGCTGCTGCCGC
1 TGCCTCCCTCGCTACTGCCGC
*
119360477 TGCCTCCCTCTCTACTGCC
1 TGCCTCCCTCGCTACTGCC
119360496 TCCACTCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.03, C:0.53, G:0.17, T:0.28
Consensus pattern (21 bp):
TGCCTCCCTCGCTACTGCCGC
Found at i:119360933 original size:13 final size:14
Alignment explanation
Indices: 119360907--119360935 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
119360897 CCTAACGATG
119360907 AATTAAACCATTAT
1 AATTAAACCATTAT
119360921 AATTAAA-CATTAT
1 AATTAAACCATTAT
119360934 AA
1 AA
119360936 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:119366182 original size:43 final size:43
Alignment explanation
Indices: 119366135--119366265 Score: 253
Period size: 43 Copynumber: 3.0 Consensus size: 43
119366125 TTATATAAGG
119366135 TATGTATTATGTAAGTTTTGTAAGTTATTATATGATATATATT
1 TATGTATTATGTAAGTTTTGTAAGTTATTATATGATATATATT
*
119366178 TATGTATTATGTAAGTTTTGTAAGTTATTATATGACATATATT
1 TATGTATTATGTAAGTTTTGTAAGTTATTATATGATATATATT
119366221 TATGTATTATGTAAGTTTTGTAAGTTATTATATGATATATATT
1 TATGTATTATGTAAGTTTTGTAAGTTATTATATGATATATATT
119366264 TA
1 TA
119366266 ACATTAAGAT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.33, C:0.01, G:0.14, T:0.53
Consensus pattern (43 bp):
TATGTATTATGTAAGTTTTGTAAGTTATTATATGATATATATT
Found at i:119369040 original size:180 final size:179
Alignment explanation
Indices: 119368702--119369053 Score: 526
Period size: 180 Copynumber: 2.0 Consensus size: 179
119368692 TTTTCTATAG
* *
119368702 ATGGGATTATGGGTATTAACTGGAAGGCCGGTGGGAGAGGTGAATCTTAGGGATTTCAAATCGGG
1 ATGGGATTAGGGGTATTAACTGGAAGGCCGGTGGGAGAGGTAAATCTTAGGGATTTCAAATCGGG
* *
119368767 GAAAAATCATTAGGGATTTGGGATGTCGAATTAGAGAATGGGTGATAATACTTTAGGGATTTAGG
66 GAAAAATCATTAGGGATTTGGGATGCCAAATTAGAGAATGGGTGATAATACTTTAGGGATTTAGG
* *
119368832 ATGAGGAAAAAGGGGGAAATAAAACTGGGAAAAAAGGGGAAATTGATAT
131 ATAAGGAAAAAGGGAGAAATAAAACTGGGAAAAAAGGGGAAATTGATAT
* * *
119368881 ATGGGATTACGGGGTATTGACTGGAAGGCCGGTGGGAGGGGTAAATCTTCA-GGATTTTAAATCG
1 ATGGGATTA-GGGGTATTAACTGGAAGGCCGGTGGGAGAGGTAAATCTT-AGGGATTTCAAATCG
* * * *
119368945 GGGAAAATTCGTTAGGGATTTGGGATGCCAAATTCGGGAATGGGTGATAATACTTTAGGGATTTA
64 GGGAAAAATCATTAGGGATTTGGGATGCCAAATTAGAGAATGGGTGATAATACTTTAGGGATTTA
* * * *
119369010 GGATAAGGAAGAAGGGAGAAATAGAACTGGGGAAAATGGGGAAA
129 GGATAAGGAAAAAGGGAGAAATAAAACTGGGAAAAAAGGGGAAA
119369054 ATGTTAAGTG
Statistics
Matches: 154, Mismatches: 17, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
179 9 0.06
180 144 0.94
181 1 0.01
ACGTcount: A:0.34, C:0.07, G:0.35, T:0.24
Consensus pattern (179 bp):
ATGGGATTAGGGGTATTAACTGGAAGGCCGGTGGGAGAGGTAAATCTTAGGGATTTCAAATCGGG
GAAAAATCATTAGGGATTTGGGATGCCAAATTAGAGAATGGGTGATAATACTTTAGGGATTTAGG
ATAAGGAAAAAGGGAGAAATAAAACTGGGAAAAAAGGGGAAATTGATAT
Found at i:119369477 original size:16 final size:17
Alignment explanation
Indices: 119369456--119369490 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
119369446 ACTATTTAAT
119369456 ATATAAATT-AAAAACA
1 ATATAAATTAAAAAACA
119369472 ATATAAATTAAAAAACA
1 ATATAAATTAAAAAACA
119369489 AT
1 AT
119369491 CACTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATATAAATTAAAAAACA
Found at i:119369540 original size:26 final size:28
Alignment explanation
Indices: 119369511--119369572 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 28
119369501 CCCAAAAAAA
*
119369511 TTTAAAATTAT-TTTAAAT-AATAGTAT
1 TTTAAAATTATATTTAAATAAATAATAT
* * *
119369537 TTT-AATTTTTATTTAAATAAATAATTT
1 TTTAAAATTATATTTAAATAAATAATAT
119369564 TTTAAAATT
1 TTTAAAATT
119369573 TAACTAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
25 5 0.18
26 10 0.36
27 9 0.32
28 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (28 bp):
TTTAAAATTATATTTAAATAAATAATAT
Found at i:119369574 original size:27 final size:27
Alignment explanation
Indices: 119369511--119369574 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
119369501 CCCAAAAAAA
*
119369511 TTTAAAA-TTATTTTAAATAATAGTAT
1 TTTAAAATTTATTTTAAATAATAATAT
** *
119369537 TTTAATTTTTA-TTTAAATAAATAATTT
1 TTTAAAATTTATTTTAAAT-AATAATAT
119369564 TTTAAAATTTA
1 TTTAAAATTTA
119369575 ACTAATATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 12 0.40
27 18 0.60
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (27 bp):
TTTAAAATTTATTTTAAATAATAATAT
Found at i:119369651 original size:17 final size:17
Alignment explanation
Indices: 119369601--119369657 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
119369591 ATTACATAAA
* *
119369601 ATTTGAAATCTTGAATTT
1 ATTTAAAAT-TTGAAATT
* *
119369619 TTTTAAAATTT-TAATT
1 ATTTAAAATTTGAAATT
*
119369635 CTTTAAAATTTGAAATT
1 ATTTAAAATTTGAAATT
119369652 ATTTAA
1 ATTTAA
119369658 TATATAGATT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
16 13 0.42
17 11 0.35
18 7 0.23
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.53
Consensus pattern (17 bp):
ATTTAAAATTTGAAATT
Found at i:119369795 original size:14 final size:14
Alignment explanation
Indices: 119369759--119369895 Score: 58
Period size: 14 Copynumber: 9.4 Consensus size: 14
119369749 CACACTAATT
*
119369759 ACCCTAAACCCCTA
1 ACCCTTAACCCCTA
* *
119369773 ACGCTTAACCCTTA
1 ACCCTTAACCCCTA
* *
119369787 ACCCCTAACCCCAA
1 ACCCTTAACCCCTA
* ** *
119369801 ACCCATGTCCCTTA
1 ACCCTTAACCCCTA
*
119369815 ACCCTAAAACCCCTTA
1 ACCCT-TAACCCC-TA
* * **
119369831 ACACATAAATCCTAA
1 ACCCTTAACCCCT-A
*
119369846 ACCCTAAACCCCATA
1 ACCCTTAACCCC-TA
* *
119369861 ACCCATAAACCCTTA
1 ACCC-TTAACCCCTA
*
119369876 ACTCTTAACCCCTAA
1 ACCCTTAACCCCT-A
119369891 ACCCT
1 ACCCT
119369896 AAGCCATAAA
Statistics
Matches: 85, Mismatches: 32, Indels: 11
0.66 0.25 0.09
Matches are distributed among these distances:
14 42 0.49
15 30 0.35
16 13 0.15
ACGTcount: A:0.36, C:0.43, G:0.01, T:0.20
Consensus pattern (14 bp):
ACCCTTAACCCCTA
Found at i:119369894 original size:30 final size:29
Alignment explanation
Indices: 119369759--119369894 Score: 107
Period size: 30 Copynumber: 4.6 Consensus size: 29
119369749 CACACTAATT
* * *
119369759 ACCCTAAACCCCTAACGC-TTAACCCTTA
1 ACCCTAAACCCCAAACCCATAAACCCTTA
**
119369787 ACCCCT-AACCCCAAACCCAT-GTCCCTTA
1 A-CCCTAAACCCCAAACCCATAAACCCTTA
* * * *
119369815 ACCCTAAAACCCCTTAACACATAAATCCTAA
1 ACCCT-AAACCCC-AAACCCATAAACCCTTA
119369846 ACCCTAAACCCCATAACCCATAAACCCTTA
1 ACCCTAAACCCCA-AACCCATAAACCCTTA
* *
119369876 ACTCTTAACCCCTAAACCC
1 ACCCTAAACCCC-AAACCC
119369895 TAAGCCATAA
Statistics
Matches: 84, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
27 4 0.05
28 18 0.21
29 11 0.13
30 41 0.49
31 10 0.12
ACGTcount: A:0.36, C:0.43, G:0.01, T:0.19
Consensus pattern (29 bp):
ACCCTAAACCCCAAACCCATAAACCCTTA
Found at i:119369895 original size:7 final size:7
Alignment explanation
Indices: 119369836--119369920 Score: 62
Period size: 7 Copynumber: 11.7 Consensus size: 7
119369826 CCTTAACACA
*
119369836 TAAATCC
1 TAAACCC
119369843 TAAACCC
1 TAAACCC
119369850 TAAACCC
1 TAAACCC
*
119369857 CATAACCC
1 TA-AACCC
119369865 ATAAACCC
1 -TAAACCC
* *
119369873 TTAACTCT
1 TAAAC-CC
*
119369881 TAACCCC
1 TAAACCC
119369888 TAAACCC
1 TAAACCC
* *
119369895 TAAGCCA
1 TAAACCC
* *
119369902 TAAAACA
1 TAAACCC
119369909 TAAACCC
1 TAAACCC
119369916 TAAAC
1 TAAAC
119369921 TTCTACCCCT
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
7 45 0.75
8 14 0.23
9 1 0.02
ACGTcount: A:0.44, C:0.36, G:0.01, T:0.19
Consensus pattern (7 bp):
TAAACCC
Found at i:119369951 original size:22 final size:22
Alignment explanation
Indices: 119369915--119369968 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
119369905 AACATAAACC
119369915 CTAAACTTCTA-CCCCTTAATC-T
1 CTAAACTT-TACCCCCTT-ATCAT
*
119369937 CTAACCTTTACCCCCTTATCAT
1 CTAAACTTTACCCCCTTATCAT
119369959 CTAAACTTTA
1 CTAAACTTTA
119369969 AACAATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.28, C:0.35, G:0.00, T:0.37
Consensus pattern (22 bp):
CTAAACTTTACCCCCTTATCAT
Found at i:119370580 original size:40 final size:40
Alignment explanation
Indices: 119370513--119370803 Score: 330
Period size: 41 Copynumber: 7.2 Consensus size: 40
119370503 TTGTAAAACA
* *
119370513 CCGCCAATGCTCTGTTTTTTAGCGGCGTTTTATCAAAAGCG
1 CCGCTAATGCTCTG-TTTTTAGCGGCGTTTTACCAAAAGCG
** *
119370554 CCTATAATGCTTTGTTTTTAGCGGCGTTTTACCAAAAGCG
1 CCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCAAAAGCG
* * *
119370594 TCGCTAATGCTCTATTTTTTAGCGGCATTTTACCAAAAGCG
1 CCGCTAATGCTCT-GTTTTTAGCGGCGTTTTACCAAAAGCG
* * *
119370635 CCGCTGATGCTCTATTTTTTAGCGACGTTTTACCAAAAGCG
1 CCGCTAATGCTCT-GTTTTTAGCGGCGTTTTACCAAAAGCG
* * * * *
119370676 CCGCTAGTGCTCTGTTTTTAACGGCATTTTACTAAAAGTG
1 CCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCAAAAGCG
* *
119370716 CCGCTAATGCTCTGTTTTTAGCGGCGTTTTAACAAAAAACG
1 CCGCTAATGCTCTGTTTTTAGCGGCGTTTT-ACCAAAAGCG
* * * * * *
119370757 CCGCTATTGCTCAGTTTTTAACAGTGTTTTACCAAAAACG
1 CCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCAAAAGCG
119370797 CCGCTAA
1 CCGCTAA
119370804 AGCCCTATTT
Statistics
Matches: 212, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
40 97 0.46
41 115 0.54
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.35
Consensus pattern (40 bp):
CCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCAAAAGCG
Found at i:119370653 original size:81 final size:81
Alignment explanation
Indices: 119370513--119370803 Score: 327
Period size: 81 Copynumber: 3.6 Consensus size: 81
119370503 TTGTAAAACA
* * * * ** *
119370513 CCGCCAATGCTCT-GTTTTTTAGCGGCGTTTTATCAAAAGCGCCTATAATGCTTTGTTTTTAGCG
1 CCGCTAATGCTCTAG-TTTTTAACGGCATTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCG
119370577 GCGTTTTACCAAAAGCG
65 GCGTTTTACCAAAAGCG
* * * * *
119370594 TCGCTAATGCTCTATTTTTTAGCGGCATTTTACCAAAAGCGCCGCTGATGCTCTATTTTTTAGCG
1 CCGCTAATGCTCTAGTTTTTAACGGCATTTTACCAAAAGCGCCGCTAATGCTCT-GTTTTTAGCG
*
119370659 ACGTTTTACCAAAAGCG
65 GCGTTTTACCAAAAGCG
* * *
119370676 CCGCTAGTGCTCT-GTTTTTAACGGCATTTTACTAAAAGTGCCGCTAATGCTCTGTTTTTAGCGG
1 CCGCTAATGCTCTAGTTTTTAACGGCATTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCGG
* *
119370740 CGTTTTAACAAAAAACG
66 CGTTTT-ACCAAAAGCG
* * ** *
119370757 CCGCTATTGCTC-AGTTTTTAACAGTGTTTTACCAAAAACGCCGCTAA
1 CCGCTAATGCTCTAGTTTTTAACGGCATTTTACCAAAAGCGCCGCTAA
119370804 AGCCCTATTT
Statistics
Matches: 177, Mismatches: 29, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
80 15 0.08
81 126 0.71
82 36 0.20
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.35
Consensus pattern (81 bp):
CCGCTAATGCTCTAGTTTTTAACGGCATTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCGG
CGTTTTACCAAAAGCG
Found at i:119373288 original size:46 final size:46
Alignment explanation
Indices: 119373228--119373501 Score: 390
Period size: 46 Copynumber: 6.0 Consensus size: 46
119373218 TTTGACGTGA
* * * * *
119373228 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
119373274 TGCCATGGTATCTTTCAATCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
119373320 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
119373366 TGCCATGGTATCTTTCAACCAT-GTCCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGT-CTTACACATTTCATATCAGGT
*
119373412 TGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
119373458 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
119373502 AGAGCACACT
Statistics
Matches: 206, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
45 6 0.03
46 198 0.96
47 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:119374031 original size:19 final size:19
Alignment explanation
Indices: 119374009--119374047 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
119373999 TTTTAAATAG
*
119374009 ATACACATGTATTAATAAT
1 ATACACATGTATAAATAAT
119374028 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
119374047 A
1 A
119374048 AATAAGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:119374951 original size:15 final size:15
Alignment explanation
Indices: 119374903--119374952 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
119374893 TTTATCAAAT
119374903 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* * *
119374918 TCATTTTGATTGAAT
1 TTATATTGATTGAAA
119374933 TTATATTGATTGAAA
1 TTATATTGATTGAAA
119374948 TTATA
1 TTATA
119374953 ATATATATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.36, C:0.02, G:0.12, T:0.50
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:119374960 original size:2 final size:2
Alignment explanation
Indices: 119374949--119374986 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
119374939 TGATTGAAAT
119374949 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119374987 GATCTATGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:119375634 original size:18 final size:19
Alignment explanation
Indices: 119375611--119375651 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
119375601 AATGAAATGA
119375611 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
119375629 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
119375648 GAAA
1 GAAA
119375652 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:119375649 original size:13 final size:13
Alignment explanation
Indices: 119375599--119375638 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
119375589 TTGAGCTATT
119375599 AGAA-TGAAA-TG
1 AGAATTGAAATTG
119375610 AGAAATTG-AATTG
1 AG-AATTGAAATTG
119375623 AGAATTGAAATTG
1 AGAATTGAAATTG
119375636 AGA
1 AGA
119375639 TATGAGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.08
12 9 0.36
13 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (13 bp):
AGAATTGAAATTG
Found at i:119378275 original size:10 final size:11
Alignment explanation
Indices: 119378249--119378281 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
119378239 TTCTACACCA
119378249 TTTCTCTTCAC
1 TTTCTCTTCAC
*
119378260 TTTCTCTT-AT
1 TTTCTCTTCAC
119378270 TTTCTCTTCAC
1 TTTCTCTTCAC
119378281 T
1 T
119378282 AACATATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTCTCTTCAC
Found at i:119378686 original size:11 final size:11
Alignment explanation
Indices: 119378670--119378717 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
119378660 CTTCATATAC
119378670 TAATAAAATAA
1 TAATAAAATAA
*
119378681 TAATAAAATATCT
1 TAATAAAATA--A
* *
119378694 TATTAAAATAT
1 TAATAAAATAA
119378705 TAATAAAATAA
1 TAATAAAATAA
119378716 TA
1 TA
119378718 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:119379715 original size:26 final size:28
Alignment explanation
Indices: 119379685--119379747 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 28
119379675 AAATAATCAT
*
119379685 TATATAAAA-ACACTTT-AAGTAAATAA
1 TATATAAAACAAACTTTGAAGTAAATAA
*
119379711 TATATAAGAACAAATTTTGAAGTAAATAA
1 TATATAA-AACAAACTTTGAAGTAAATAA
119379740 TATATAAA
1 TATATAAA
119379748 GCAATTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 7 0.22
27 2 0.06
28 6 0.19
29 17 0.53
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (28 bp):
TATATAAAACAAACTTTGAAGTAAATAA
Found at i:119379931 original size:24 final size:22
Alignment explanation
Indices: 119379879--119379922 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
119379869 AAAATGTATG
119379879 AAATAAATAATAAAACAACTTA
1 AAATAAATAATAAAACAACTTA
*
119379901 AAATAAATAATATAA-AACTTA
1 AAATAAATAATAAAACAACTTA
119379922 A
1 A
119379923 GTAAGTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (22 bp):
AAATAAATAATAAAACAACTTA
Found at i:119380775 original size:14 final size:15
Alignment explanation
Indices: 119380748--119380777 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
119380738 GTTTATGTTG
119380748 AAAGAAAAAGAAAGA
1 AAAGAAAAAGAAAGA
119380763 AAAGAAAAA-AAAGA
1 AAAGAAAAAGAAAGA
119380777 A
1 A
119380778 TTCGAAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAGAAAGA
Found at i:119384354 original size:26 final size:26
Alignment explanation
Indices: 119384325--119384434 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
119384315 TGATACAAAT
119384325 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
119384351 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
119384377 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
119384403 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
119384429 TGATAA
1 TGATAA
119384435 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:119386465 original size:136 final size:136
Alignment explanation
Indices: 119386220--119386638 Score: 766
Period size: 136 Copynumber: 3.1 Consensus size: 136
119386210 TAGTCTCCCC
*
119386220 AAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
1 AAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
*
119386285 TATCTGAATAAGGGTCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACCACT
65 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACCACT
119386350 GTTACCT
130 GTTACCT
*
119386357 AAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGACATACTGTT
1 AAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
*
119386422 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTG
66 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACCACTG
*
119386487 TTACCC
131 TTACCT
119386493 AAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
1 AAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
*
119386558 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCTAGTACCACTG
66 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACCACTG
119386623 TTACCT
131 TTACCT
*
119386629 GAATGGGCTT
1 AAATGGGCTT
119386639 AGGCCCAATA
Statistics
Matches: 272, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
136 255 0.94
137 17 0.06
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (136 bp):
AAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACCACTG
TTACCT
Found at i:119389073 original size:12 final size:12
Alignment explanation
Indices: 119389056--119389089 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
119389046 CGACCACCGT
119389056 GCACGGTGGCCG
1 GCACGGTGGCCG
* *
119389068 GCACGGCGGACG
1 GCACGGTGGCCG
119389080 GCACGGTGGC
1 GCACGGTGGC
119389090 GGTTGAGGCC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.12, C:0.32, G:0.50, T:0.06
Consensus pattern (12 bp):
GCACGGTGGCCG
Found at i:119389931 original size:21 final size:21
Alignment explanation
Indices: 119389881--119389932 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
119389871 TGTTCTATCA
* *
119389881 TGTATATTTT-GTATGTCATG
1 TGTATATTTTAATATATCATG
* * *
119389901 TATATGTTTTAATATATTATG
1 TGTATATTTTAATATATCATG
119389922 TGTATATTTTA
1 TGTATATTTTA
119389933 TTTTGTATTA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (21 bp):
TGTATATTTTAATATATCATG
Found at i:119395094 original size:18 final size:19
Alignment explanation
Indices: 119395063--119395105 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
119395053 ATTTTTGTGT
* *
119395063 TTATTTATTTATTG-TTTA
1 TTATTAATTCATTGATTTA
119395081 TTATTAATTCATTGATTTA
1 TTATTAATTCATTGATTTA
*
119395100 TGATTA
1 TTATTA
119395106 TTAACATATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
TTATTAATTCATTGATTTA
Found at i:119395232 original size:6 final size:6
Alignment explanation
Indices: 119395221--119395247 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
119395211 TAGCGCTTCA
119395221 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
119395248 TTTACTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:119395266 original size:2 final size:2
Alignment explanation
Indices: 119395261--119395307 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
119395251 ACTTAATACT
119395261 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119395302 TA TA TA
1 TA TA TA
119395308 CATTACATAG
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:119395431 original size:2 final size:2
Alignment explanation
Indices: 119395426--119395468 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
119395416 ATACATATTT
*
119395426 TA TA TA T- TA TA T- TT TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119395466 TA T
1 TA T
119395469 GCATACATAG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:119395439 original size:14 final size:15
Alignment explanation
Indices: 119395420--119395468 Score: 73
Period size: 16 Copynumber: 3.3 Consensus size: 15
119395410 ATATGCATAC
119395420 ATATTTTATATAT-T
1 ATATTTTATATATAT
119395434 ATATTTTATATATAT
1 ATATTTTATATATAT
*
119395449 ATATATATATATATAT
1 ATAT-TTTATATATAT
119395465 ATAT
1 ATAT
119395469 GCATACATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 13 0.41
15 5 0.16
16 14 0.44
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATTTTATATATAT
Found at i:119395770 original size:15 final size:15
Alignment explanation
Indices: 119395752--119395804 Score: 70
Period size: 15 Copynumber: 3.3 Consensus size: 15
119395742 ATATAAAATA
119395752 TATATATATATATTT
1 TATATATATATATTT
119395767 TATATATATATATTT
1 TATATATATATATTT
*
119395782 TACATATCATATTATTGT
1 TATATAT-ATA-TATT-T
119395800 TATAT
1 TATAT
119395805 CTATTTTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 21 0.64
16 3 0.09
17 4 0.12
18 5 0.15
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (15 bp):
TATATATATATATTT
Found at i:119395770 original size:17 final size:17
Alignment explanation
Indices: 119395749--119395804 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
119395739 ATCATATAAA
119395749 ATATATATATATATATTT
1 ATATATATATATAT-TTT
119395767 -TATATATATATATTTT
1 ATATATATATATATTTT
*
119395783 ACATATCATAT-TATTGTT
1 ATATAT-ATATATATT-TT
119395801 ATAT
1 ATAT
119395805 CTATTTTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 3 0.09
17 21 0.64
18 9 0.27
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (17 bp):
ATATATATATATATTTT
Found at i:119396174 original size:18 final size:18
Alignment explanation
Indices: 119396151--119396196 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
119396141 ATTTCCTAAC
119396151 TTATTCATTATT-TTCGTT
1 TTATTCATT-TTATTCGTT
*
119396169 TTATTCGTTTTATTCGTT
1 TTATTCATTTTATTCGTT
119396187 TTATTCATTT
1 TTATTCATTT
119396197 ATCTTTACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 2 0.08
18 23 0.92
ACGTcount: A:0.15, C:0.11, G:0.07, T:0.67
Consensus pattern (18 bp):
TTATTCATTTTATTCGTT
Found at i:119396177 original size:9 final size:9
Alignment explanation
Indices: 119396163--119396192 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
119396153 ATTCATTATT
119396163 TTCGTTTTA
1 TTCGTTTTA
119396172 TTCGTTTTA
1 TTCGTTTTA
119396181 TTCGTTTTA
1 TTCGTTTTA
119396190 TTC
1 TTC
119396193 ATTTATCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.10, C:0.13, G:0.10, T:0.67
Consensus pattern (9 bp):
TTCGTTTTA
Found at i:119408240 original size:43 final size:42
Alignment explanation
Indices: 119408184--119408347 Score: 141
Period size: 43 Copynumber: 3.8 Consensus size: 42
119408174 TGAATTTACA
119408184 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTCAC
1 AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTCAC
* * * * * * * *
119408226 GAATCTTAACCCCCTAAGCAGTAGGGAAATAGATCGAGGA-TGAC
1 -AACCTTAAACCCCTAAGCAGTAGGGTAACAGGT-TA-AATTCAC
* * * * *
119408270 AAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTCAC
1 AA-CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTCAC
* *
119408313 AGACCTTAAACCCCTAAGCAGTAAGGTAATAGGTT
1 A-ACCTTAAACCCCTAAGCAGTAGGGTAACAGGTT
119408348 GAAAATCCCA
Statistics
Matches: 91, Mismatches: 25, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
42 1 0.01
43 60 0.66
44 29 0.32
45 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.21
Consensus pattern (42 bp):
AACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTCAC
Found at i:119408573 original size:132 final size:131
Alignment explanation
Indices: 119408173--119408608 Score: 359
Period size: 132 Copynumber: 3.3 Consensus size: 131
119408163 GTGGAGCAGA
* * * * *
119408173 CTGAATTTACAAACCTTAAACCCCTAAGCAGTAGGGTAACAGG-TTAAATTCAC-GAATCTTAAC
1 CTGAA-TTACAGACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATCCCAG-ATCTT-AC
** * * * * *
119408236 C-CCCTAAGCA-GTAG-GGAAATAGATCGAGGATGACAAG-CTTTAACCCCCTAAGCAGTAGGGT
63 CTCCCTAAGCATGTAGTGG-AGCAGATCAAAGACGA-AAGACCTTAAACCCCTAAGCAGTAGGGT
*
119408297 AACAAG
126 AACAGG
* * * * *
119408303 CTGAATTCACAGACCTTAAACCCCTAAGCAGTAAGGTAATAGGTTGAAAATCCCAGATCTTGCCT
1 CTGAATT-ACAGACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATCCCAGATCTTACCT
* * ** **
119408368 TCCTGAGGTTGTAGTGGAGCAGATCAAAGACGAAAGGTCTTAAACCCCTAAGCAGTAGGGTAACA
65 CCCTAAGCATGTAGTGGAGCAGATCAAAGACGAAAGACCTTAAACCCCTAAGCAGTAGGGTAACA
*
119408433 GA
130 GG
* * * ** * *
119408435 CCGAATTGCAGACCTTAACCCCCTAAGCAATAGGGTAACAGGCTGAAGGTTTCCAGATCTTTATC
1 CTGAATTACAGACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAA-AATCCCAGATC-TTACC
* *
119408500 TCCCTAAGCAT-TAGTGGAG-ATAGTCGAAGACG-AAGAACCTTAAACCCCTAAGCAGTAGGGTA
64 TCCCTAAGCATGTAGTGGAGCAGA-TCAAAGACGAAAG-ACCTTAAACCCCTAAGCAGTAGGGTA
119408562 ACAGG
127 ACAGG
* * * * *
119408567 TTGAATTTATAGATCTTTACCCCCTAAGCAGTAGGGAAACAG
1 CTGAA-TTACAGACCTTAACCCCCTAAGCAGTAGGGTAACAG
119408609 ATCAAAGATG
Statistics
Matches: 244, Mismatches: 50, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
129 2 0.01
130 39 0.16
131 59 0.24
132 102 0.42
133 42 0.17
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (131 bp):
CTGAATTACAGACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATCCCAGATCTTACCTC
CCTAAGCATGTAGTGGAGCAGATCAAAGACGAAAGACCTTAAACCCCTAAGCAGTAGGGTAACAG
G
Found at i:119408644 original size:87 final size:88
Alignment explanation
Indices: 119408446--119408655 Score: 219
Period size: 87 Copynumber: 2.4 Consensus size: 88
119408436 CGAATTGCAG
* * * *
119408446 ACCTTAACCCCCTAAGCAATAGGGTAACAGGCTGAAGGTTTCCAGATCTTTATCTCCCTAAGCAT
1 ACCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTGAA-GTTTACAGATCTTTATCCCCCTAAGCAG
* * *
119408511 TAGTGGAGATAGTCGAAGACGAAGA
64 TAGTGGAAACAGTCAAAGACGAAGA
* *
119408536 ACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAA-TTTATAGATCTTTA-CCCCCTAAGCAGT
1 ACCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAAGTTTACAGATCTTTATCCCCCTAAGCAGT
* * *
119408599 AG-GGAAACAGATCAAAGATGATGG
65 AGTGGAAACAG-TCAAAGACGAAGA
* * *
119408623 GCCTTAACCCCTTAAGTAGTAGGGTAATAGGCT
1 ACCTTAACCCC-TAAGCAGTAGGGTAACAGGCT
119408656 AAAAATTATA
Statistics
Matches: 101, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
86 12 0.12
87 44 0.44
88 12 0.12
90 31 0.31
91 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (88 bp):
ACCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGTTTACAGATCTTTATCCCCCTAAGCAGTA
GTGGAAACAGTCAAAGACGAAGA
Found at i:119410122 original size:15 final size:16
Alignment explanation
Indices: 119410088--119410125 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
119410078 ATAATTATAT
*
119410088 TTTATTTTATTTTTTTG
1 TTTA-TTTATTTTATTG
119410105 TTTATTTA-TTTATTG
1 TTTATTTATTTTATTG
119410120 TTTATT
1 TTTATT
119410126 ATTAATTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 12 0.60
16 4 0.20
17 4 0.20
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (16 bp):
TTTATTTATTTTATTG
Found at i:119410137 original size:18 final size:19
Alignment explanation
Indices: 119410106--119410148 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
119410096 ATTTTTTTGT
* *
119410106 TTATTTATTTATTG-TTTA
1 TTATTAATTCATTGATTTA
119410124 TTATTAATTCATTGATTTA
1 TTATTAATTCATTGATTTA
*
119410143 TGATTA
1 TTATTA
119410149 TTAACATATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
TTATTAATTCATTGATTTA
Found at i:119410317 original size:13 final size:13
Alignment explanation
Indices: 119410299--119410324 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
119410289 CTTAATACTT
119410299 ATATATATATATA
1 ATATATATATATA
119410312 ATATATATATATA
1 ATATATATATATA
119410325 CATTACATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATATATATATA
Found at i:119410457 original size:15 final size:16
Alignment explanation
Indices: 119410437--119410471 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
119410427 ATATGCATAC
*
119410437 ATATTTTTATATAT-T
1 ATATTTTAATATATAT
119410452 ATATTTTAATATATAT
1 ATATTTTAATATATAT
119410468 ATAT
1 ATAT
119410472 ATATGCATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATATTTTAATATATAT
Found at i:119412113 original size:2 final size:2
Alignment explanation
Indices: 119412108--119412135 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
119412098 GGTTACGACA
119412108 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119412136 TGTGAACTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119416159 original size:22 final size:22
Alignment explanation
Indices: 119416115--119416161 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
119416105 TATTAACAAA
* *
119416115 TTATTAAGAAATAGAATATTAT
1 TTATTAAGAAATAGAAAAATAT
* *
119416137 TTATTAAGAACTATAAAAATAT
1 TTATTAAGAAATAGAAAAATAT
119416159 TTA
1 TTA
119416162 AAAATTAATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.40
Consensus pattern (22 bp):
TTATTAAGAAATAGAAAAATAT
Found at i:119417380 original size:16 final size:17
Alignment explanation
Indices: 119417350--119417382 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
119417340 ACACGTAAAG
119417350 TTAAGACATTAAAATTT
1 TTAAGACATTAAAATTT
*
119417367 TTAA-ACATTCAAATTT
1 TTAAGACATTAAAATTT
119417383 ACCATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.42
Consensus pattern (17 bp):
TTAAGACATTAAAATTT
Found at i:119422532 original size:136 final size:137
Alignment explanation
Indices: 119422288--119422573 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
119422278 TATTGGGCCT
** * *
119422288 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
119422353 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
119422417 CATATGC
131 CATATGC
119422424 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
119422489 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
119422554 CATATGC
131 CATATGC
119422561 AAGCCCATTTGGG
1 AAGCCCATTTGGG
119422574 GAGACTACTC
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 122 0.85
137 22 0.15
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:119424395 original size:26 final size:26
Alignment explanation
Indices: 119424359--119424468 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
119424349 CATGAATTTC
*
119424359 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
119424385 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
119424411 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
119424437 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
119424463 TTATCA
1 TTATCA
119424469 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:119431278 original size:2 final size:2
Alignment explanation
Indices: 119431273--119431308 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
119431263 AGTTACTCAC
119431273 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119431309 GTATTTGGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119436477 original size:9 final size:9
Alignment explanation
Indices: 119436452--119436482 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
119436442 AATTTGTGAA
119436452 AAATAAAAT
1 AAATAAAAT
119436461 AGAATAAAAT
1 A-AATAAAAT
119436471 AAATAAAAT
1 AAATAAAAT
119436480 AAA
1 AAA
119436483 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:119441360 original size:21 final size:21
Alignment explanation
Indices: 119441329--119441377 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
119441319 AAAAAATTTT
119441329 AGGATAAGAAAAATTGGCAGAA
1 AGGA-AAGAAAAATTGGCAGAA
119441351 AGGAAAGAAAAATTGGCAGAA
1 AGGAAAGAAAAATTGGCAGAA
119441372 AGGAAA
1 AGGAAA
119441378 ATGTAAGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.57, C:0.04, G:0.29, T:0.10
Consensus pattern (21 bp):
AGGAAAGAAAAATTGGCAGAA
Found at i:119441747 original size:33 final size:33
Alignment explanation
Indices: 119441710--119441777 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
119441700 CAATGAACCA
*
119441710 AACATGACTTTAGTTTATTATTAAATTTTTGTC
1 AACATGACTTTAGTTTATTATTAAATCTTTGTC
119441743 AACATGACTTTAGTTTATTATTAAATCTTTGTC
1 AACATGACTTTAGTTTATTATTAAATCTTTGTC
119441776 AA
1 AA
119441778 TCTAGTAGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.32, C:0.10, G:0.09, T:0.49
Consensus pattern (33 bp):
AACATGACTTTAGTTTATTATTAAATCTTTGTC
Found at i:119443121 original size:24 final size:25
Alignment explanation
Indices: 119443088--119443134 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
119443078 TTTTTAAAAA
119443088 TATATATAATCATAAAT-TTAAATTT
1 TATATATAAT-ATAAATATTAAATTT
*
119443113 TATAT-TAATATTAATATTAAAT
1 TATATATAATATAAATATTAAAT
119443135 AAAAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 10 0.50
25 5 0.25
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
TATATATAATATAAATATTAAATTT
Found at i:119443147 original size:31 final size:30
Alignment explanation
Indices: 119443112--119443170 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
119443102 AATTTAAATT
* *
119443112 TTATATTAATATTAATATTAAATAAAAATAA
1 TTATATTAATACTAA-ATAAAATAAAAATAA
119443143 TTATATTAATACTAAATAAAATAAAAAT
1 TTATATTAATACTAAATAAAATAAAAAT
119443171 TCTCCACCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 12 0.46
31 14 0.54
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (30 bp):
TTATATTAATACTAAATAAAATAAAAATAA
Found at i:119444054 original size:18 final size:18
Alignment explanation
Indices: 119444014--119444069 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
119444004 AAGTACAAAA
*
119444014 AAAACTTCAAAATAATTTTT
1 AAAA-TTCAAAAT-ATTTAT
119444034 AAAATTCAAAATATTTAT
1 AAAATTCAAAATATTTAT
*
119444052 AAAATTCTAAA-ATTTAT
1 AAAATTCAAAATATTTAT
119444069 A
1 A
119444070 TTTTAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 7 0.21
18 15 0.44
19 8 0.24
20 4 0.12
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAATTCAAAATATTTAT
Found at i:119444107 original size:31 final size:30
Alignment explanation
Indices: 119444069--119444161 Score: 91
Period size: 31 Copynumber: 3.1 Consensus size: 30
119444059 TAAAATTTAT
*
119444069 ATTTTAAAAAACATATATATAAATTTTAAAA
1 ATTTTAAAAAATATATATA-AAATTTTAAAA
* * *
119444100 ATTTTAAAGAATATATAAAGAAAATTT-AAA
1 ATTTTAAAAAATATATATA-AAATTTTAAAA
* *
119444130 ATTTTATAAAATA-ATTTAAAATTTTATAAA
1 ATTTTAAAAAATATATATAAAATTTTA-AAA
119444160 AT
1 AT
119444162 AATAATTTTG
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
28 6 0.12
29 3 0.06
30 19 0.38
31 22 0.44
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (30 bp):
ATTTTAAAAAATATATATAAAATTTTAAAA
Found at i:119444139 original size:21 final size:20
Alignment explanation
Indices: 119444113--119444160 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
119444103 TTAAAGAATA
119444113 TATAAAGAAAATTTAAAATTT
1 TATAAA-AAAATTTAAAATTT
*
119444134 TATAAAATAATTTAAAATTT
1 TATAAAAAAATTTAAAATTT
119444154 TATAAAA
1 TATAAAA
119444161 TAATAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
TATAAAAAAATTTAAAATTT
Found at i:119444147 original size:20 final size:20
Alignment explanation
Indices: 119444122--119444164 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
119444112 ATATAAAGAA
119444122 AATTTAAAATTTTATAAAAT
1 AATTTAAAATTTTATAAAAT
119444142 AATTTAAAATTTTATAAAAT
1 AATTTAAAATTTTATAAAAT
119444162 AAT
1 AAT
119444165 AATTTTGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTTAAAATTTTATAAAAT
Found at i:119444625 original size:23 final size:23
Alignment explanation
Indices: 119444599--119444677 Score: 83
Period size: 23 Copynumber: 3.4 Consensus size: 23
119444589 AATTTAAATC
119444599 TATTATATTATTTTGAAAATATT
1 TATTATATTATTTTGAAAATATT
* *
119444622 TATTTTTATATATTTT-TAAA-ATT
1 TA-TTATAT-TATTTTGAAAATATT
119444645 TATTATTATTATTTTTGAAAATATT
1 TATTA-TATTA-TTTTGAAAATATT
119444670 TA-TATATT
1 TATTATATT
119444678 TTTATATATT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
22 4 0.09
23 18 0.39
24 13 0.28
25 11 0.24
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (23 bp):
TATTATATTATTTTGAAAATATT
Found at i:119444631 original size:26 final size:26
Alignment explanation
Indices: 119444601--119444672 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 26
119444591 TTTAAATCTA
119444601 TTATATTATTTTGAAAATATTTATTT
1 TTATATTATTTTGAAAATATTTATTT
*
119444627 TTATA-TATTTT-TAAA-ATTTA-TT
1 TTATATTATTTTGAAAATATTTATTT
*
119444649 AT-TATTATTTTTGAAAATATTTAT
1 TTATATTA-TTTTGAAAATATTTAT
119444673 ATATTTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
21 2 0.05
22 5 0.13
23 9 0.24
24 6 0.16
25 11 0.29
26 5 0.13
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (26 bp):
TTATATTATTTTGAAAATATTTATTT
Done.