Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 389 of 425
Found at i:119444637 original size:10 final size:10
Alignment explanation
Indices: 119444622--119444688 Score: 57
Period size: 10 Copynumber: 6.5 Consensus size: 10
119444612 TGAAAATATT
119444622 TATTTTTATA
1 TATTTTTATA
119444632 TATTTTTA-A
1 TATTTTTATA
*
119444641 AATTTATTATTA
1 TATTT-TTA-TA
119444653 TTATTTTTGA-A
1 -TATTTTT-ATA
* *
119444664 AATATTTATA
1 TATTTTTATA
119444674 TATTTTTATA
1 TATTTTTATA
119444684 TATTT
1 TATTT
119444689 CTTTAATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
9 6 0.13
10 30 0.67
11 1 0.02
12 3 0.07
13 5 0.11
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (10 bp):
TATTTTTATA
Found at i:119447175 original size:2 final size:2
Alignment explanation
Indices: 119447168--119447200 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
119447158 AAAATCACTT
*
119447168 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119447201 CATGATAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:119455255 original size:25 final size:26
Alignment explanation
Indices: 119455208--119455256 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
119455198 TTTTTACGAC
*
119455208 TTATCTTATTAAAAAATTAAAATAAA
1 TTATCTTATTAAAAAATAAAAATAAA
119455234 TTATCTT-TTAAAAAA-AAGAAATA
1 TTATCTTATTAAAAAATAA-AAATA
119455257 TTCAAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.62
26 7 0.33
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (26 bp):
TTATCTTATTAAAAAATAAAAATAAA
Found at i:119455327 original size:19 final size:18
Alignment explanation
Indices: 119455285--119455327 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
119455275 TCTTTCATAC
119455285 AAAATTATATAAAATAAT
1 AAAATTATATAAAATAAT
* *
119455303 ATAAATTATTATATAATATT
1 A-AAATTA-TATAAAATAAT
119455323 AAAAT
1 AAAAT
119455328 ACAAATACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 10 0.48
20 10 0.48
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATTATATAAAATAAT
Found at i:119455910 original size:12 final size:12
Alignment explanation
Indices: 119455893--119455925 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
119455883 TCGGCCTGCC
119455893 ATATTAATTTTT
1 ATATTAATTTTT
119455905 ATATT-ATTTTT
1 ATATTAATTTTT
119455916 ATA-TAATTTT
1 ATATTAATTTT
119455926 AAAAAATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:119456092 original size:30 final size:31
Alignment explanation
Indices: 119456049--119456111 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
119456039 CTTAACAAGT
*
119456049 AAATGTTTCTAAAATAAT-AACAAAATTAAC
1 AAATGTTTCTAAAATAATAAAAAAAATTAAC
119456079 AAATGTCTT-TAAAATAATAAAAAAAATTAAC
1 AAATGT-TTCTAAAATAATAAAAAAAATTAAC
119456110 AA
1 AA
119456112 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 15 0.50
31 15 0.50
ACGTcount: A:0.60, C:0.08, G:0.03, T:0.29
Consensus pattern (31 bp):
AAATGTTTCTAAAATAATAAAAAAAATTAAC
Found at i:119456179 original size:11 final size:11
Alignment explanation
Indices: 119456148--119456188 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
119456138 ACAATAACAA
*
119456148 CAAAATATTAG
1 CAAAATAGTAG
*
119456159 CAACATAGTAG
1 CAAAATAGTAG
*
119456170 TAAAATAGTAG
1 CAAAATAGTAG
119456181 CAAAATAG
1 CAAAATAG
119456189 GGAGAAAACA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.54, C:0.10, G:0.15, T:0.22
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:119456613 original size:21 final size:22
Alignment explanation
Indices: 119456580--119456622 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
119456570 TAGTTTTCAG
* *
119456580 TTTATTAATAAATATATATTAT
1 TTTAGTAATAAATATAAATTAT
119456602 TTTAGTAA-AAATATAAATTAT
1 TTTAGTAATAAATATAAATTAT
119456623 ATACTGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TTTAGTAATAAATATAAATTAT
Found at i:119456840 original size:26 final size:26
Alignment explanation
Indices: 119456788--119456840 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
119456778 ATTAAAATAA
*
119456788 TTAAAATAAAAAATTTAATAGTTAAT
1 TTAAAATAAAAAATTTAATAGTCAAT
* *
119456814 TTAAAATATCAAAATTTTATA-TCAAT
1 TTAAAATA-AAAAATTTAATAGTCAAT
119456840 T
1 T
119456841 GGCTCGATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (26 bp):
TTAAAATAAAAAATTTAATAGTCAAT
Found at i:119457279 original size:17 final size:17
Alignment explanation
Indices: 119457253--119457285 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
119457243 AAAAAGAGAA
119457253 AGAAAAAAGGT-AAAAG
1 AGAAAAAAGGTCAAAAG
119457269 AGAAGAAAAGGTCAAAA
1 AGAA-AAAAGGTCAAAA
119457286 ATAGACAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.67, C:0.03, G:0.24, T:0.06
Consensus pattern (17 bp):
AGAAAAAAGGTCAAAAG
Found at i:119468673 original size:26 final size:26
Alignment explanation
Indices: 119468637--119468687 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
119468627 CTTTGACATC
119468637 TTGCTGAGCTTGCAACTTGCACATTT
1 TTGCTGAGCTTGCAACTTGCACATTT
*
119468663 TTGCTGAGCTTGCAGCTTGCACATT
1 TTGCTGAGCTTGCAACTTGCACATT
119468688 GGAAAGCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
TTGCTGAGCTTGCAACTTGCACATTT
Found at i:119471476 original size:26 final size:26
Alignment explanation
Indices: 119471447--119471554 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
119471437 TAGTACAAAT
119471447 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
119471473 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
119471499 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
119471525 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
119471551 TGAT
1 TGAT
119471555 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:119474723 original size:25 final size:26
Alignment explanation
Indices: 119474663--119474732 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
119474653 GGTTCTTCGT
* *
119474663 GAGCTT-CTCGATTAAAGGCTCTTTGC
1 GAGCTTCCT-GATTAATGGCTCTTTGA
119474689 GAGCTTCCTGATTAATGGCTCTTT-A
1 GAGCTTCCTGATTAATGGCTCTTTGA
119474714 GAGCTTCCTGA-T-ATGGCTC
1 GAGCTTCCTGATTAATGGCTC
119474733 GCTTGAAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
23 7 0.17
24 1 0.02
25 11 0.27
26 20 0.49
27 2 0.05
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GAGCTTCCTGATTAATGGCTCTTTGA
Found at i:119475577 original size:25 final size:25
Alignment explanation
Indices: 119475524--119475600 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
119475514 TGTTATATAG
*
119475524 AGAGCACGAATGTGCT-A-AA-CAA
1 AGAGCACTAATGTGCTAATAATCAA
119475546 AGAGCACTAATGTGCTAATAATCAA
1 AGAGCACTAATGTGCTAATAATCAA
* * *
119475571 ATAGCACT-ATCGTGCTAATTATCAG
1 AGAGCACTAAT-GTGCTAATAATCAA
119475596 AGAGC
1 AGAGC
119475601 GTGCTAAAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.33
23 1 0.02
24 4 0.09
25 26 0.57
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (25 bp):
AGAGCACTAATGTGCTAATAATCAA
Found at i:119479652 original size:14 final size:14
Alignment explanation
Indices: 119479633--119479668 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
119479623 CCTATTTTTC
*
119479633 CTTTCTTTTTCTTT
1 CTTTCTTTTTCCTT
119479647 CTTTCTTTTTCCTT
1 CTTTCTTTTTCCTT
119479661 CTTTCTTT
1 CTTTCTTT
119479669 CCCTACTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (14 bp):
CTTTCTTTTTCCTT
Found at i:119481664 original size:14 final size:14
Alignment explanation
Indices: 119481642--119481678 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
119481632 TTGCATAAAT
*
119481642 TGTGAATATGAGAC
1 TGTGGATATGAGAC
119481656 TGTGGATATGAGAC
1 TGTGGATATGAGAC
*
119481670 TATGGATAT
1 TGTGGATAT
119481679 AAGTCAGGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.32
Consensus pattern (14 bp):
TGTGGATATGAGAC
Found at i:119482693 original size:12 final size:13
Alignment explanation
Indices: 119482671--119482696 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
119482661 AGTTGAGAGC
119482671 TTTGTTTTTTTTT
1 TTTGTTTTTTTTT
119482684 TTTGTTTTTTTTT
1 TTTGTTTTTTTTT
119482697 GGGAAATAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (13 bp):
TTTGTTTTTTTTT
Found at i:119483235 original size:2 final size:2
Alignment explanation
Indices: 119483228--119483266 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
119483218 TAAGTCTTTT
119483228 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
119483267 TATTTATGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:119483667 original size:2 final size:2
Alignment explanation
Indices: 119483660--119483693 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
119483650 ACCAATTTAC
119483660 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119483694 TTCCTTTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119487741 original size:33 final size:35
Alignment explanation
Indices: 119487676--119487741 Score: 82
Period size: 33 Copynumber: 1.9 Consensus size: 35
119487666 CAATTGTAAC
* *
119487676 ATATTTATCTAATTACTTTTTATTTAAGTAAATAG
1 ATATTTATCTAATTACTTATTATTAAAGTAAATAG
* *
119487711 ATATTTAT-TATTTA-TTATTATTAAATTAAAT
1 ATATTTATCTAATTACTTATTATTAAAGTAAAT
119487742 TAAAGACAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 14 0.52
34 5 0.19
35 8 0.30
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (35 bp):
ATATTTATCTAATTACTTATTATTAAAGTAAATAG
Found at i:119487997 original size:2 final size:2
Alignment explanation
Indices: 119487990--119488024 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
119487980 TATTTAGTTA
119487990 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
119488025 GACAAAGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:119488527 original size:23 final size:23
Alignment explanation
Indices: 119488501--119488544 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
119488491 GATTAAAATT
119488501 GAAATTAAAGT-AGAAATTTAATA
1 GAAATT-AAGTAAGAAATTTAATA
*
119488524 GAAATTGAGTAAGAAATTTAA
1 GAAATTAAGTAAGAAATTTAA
119488545 ATATTAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.30
Consensus pattern (23 bp):
GAAATTAAGTAAGAAATTTAATA
Found at i:119495335 original size:51 final size:52
Alignment explanation
Indices: 119495255--119495355 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 52
119495245 CATGAAATTC
119495255 TTATCATGAAACATTTACCTAACCCATTATCAT-GAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCA
* *
119495306 TTATCATGGAACATTTACCTAACCTATTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACC
119495356 TTTATCAATT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 31 0.66
52 16 0.34
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.33
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCA
Found at i:119495356 original size:26 final size:26
Alignment explanation
Indices: 119495255--119495355 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
119495245 CATGAAATTC
*
119495255 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
119495281 TTATCAT-GAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
119495306 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
119495332 TTATCATGGAACATTTACCTAACC
1 TTATCATGGAACATTTACCTAACC
119495356 TTTATCAATT
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
25 24 0.33
26 48 0.67
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:119499545 original size:25 final size:27
Alignment explanation
Indices: 119499508--119499560 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
119499498 TCAAACATGC
119499508 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
119499534 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
119499560 A
1 A
119499561 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:119501078 original size:26 final size:26
Alignment explanation
Indices: 119501042--119501151 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
119501032 CATGAAATTC
119501042 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
119501068 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
119501094 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
119501120 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
119501146 TTATCA
1 TTATCA
119501152 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:119501636 original size:39 final size:39
Alignment explanation
Indices: 119501578--119501678 Score: 141
Period size: 39 Copynumber: 2.6 Consensus size: 39
119501568 TCGTGATCTA
* * * *
119501578 AAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAAGGG
1 AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAAGAG
*
119501617 AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAATAG
1 AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAAGAG
*
119501656 AAGCCCGAAGGCTAA-TGTAGCAC
1 AAGCCCGAAGGCTAACTGAAGCAC
119501679 CCCAAACCCG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
38 7 0.12
39 49 0.88
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.14
Consensus pattern (39 bp):
AAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAAGAG
Found at i:119501659 original size:21 final size:20
Alignment explanation
Indices: 119501594--119501659 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
119501584 GAAGTCTAGC
*
119501594 TGAAGCACATAAGTGCTAAA
1 TGAAGCACACAAGTGCTAAA
* *
119501614 GGGAAGC-C-CGAAG-GCTAAC
1 -TGAAGCACAC-AAGTGCTAAA
119501633 TGAAGCACACAAGTGCTAAA
1 TGAAGCACACAAGTGCTAAA
119501653 TAGAAGC
1 T-GAAGC
119501660 CCGAAGGCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
18 5 0.14
19 9 0.26
20 11 0.31
21 10 0.29
ACGTcount: A:0.41, C:0.20, G:0.26, T:0.14
Consensus pattern (20 bp):
TGAAGCACACAAGTGCTAAA
Found at i:119504410 original size:26 final size:26
Alignment explanation
Indices: 119504308--119504409 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
119504298 CATGAAATTC
119504308 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
119504334 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
119504360 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
119504386 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
119504410 TTTATCAATT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:119504800 original size:18 final size:20
Alignment explanation
Indices: 119504749--119504802 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 20
119504739 GGGTGTTACA
*
119504749 GCTAACTGAAGCACACAAGT
1 GCTAACTGAAGCTCACAAGT
* *
119504769 GCTAAACGGAAGCTC-GAAG-
1 GCT-AACTGAAGCTCACAAGT
119504788 GCTAACTGAAGCTCA
1 GCTAACTGAAGCTCA
119504803 TCGAGCTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 10 0.36
19 3 0.11
20 6 0.21
21 9 0.32
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (20 bp):
GCTAACTGAAGCTCACAAGT
Found at i:119504865 original size:20 final size:20
Alignment explanation
Indices: 119504852--119504893 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
119504842 CATATGAGTC
119504852 AACGAAAGCTCATAAGAGCT
1 AACGAAAGCTCATAAGAGCT
119504872 AACGAAAGCTCATAAGAGCT
1 AACGAAAGCTCATAAGAGCT
119504892 AA
1 AA
119504894 ACGGAAAGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.14
Consensus pattern (20 bp):
AACGAAAGCTCATAAGAGCT
Found at i:119505911 original size:20 final size:20
Alignment explanation
Indices: 119505886--119505924 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
119505876 TATTTTGTTC
119505886 ACAAAGTTAGCTTACTGCTT
1 ACAAAGTTAGCTTACTGCTT
119505906 ACAAAGTTAGCTTACTGCT
1 ACAAAGTTAGCTTACTGCT
119505925 GCTGTCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (20 bp):
ACAAAGTTAGCTTACTGCTT
Found at i:119508539 original size:141 final size:141
Alignment explanation
Indices: 119508285--119508541 Score: 406
Period size: 141 Copynumber: 1.8 Consensus size: 141
119508275 GTCTCATCTA
* * *
119508285 TTCTTAATTTTTAGCATTTTTGGACAGTGAGTTACACGGGCTGTTCATACGGGCGTGTGCCCTCT
1 TTCTTAATTTTTAGCATTTTTGGACAGTGAGTTACACGGGCTGTTCACACGGGCGTGTACCCTCA
*
119508350 CCACACGAGCGTATGAAGCCTCCACATGGGCCTATAGACCCCCACACGGCCTAGGCAATACCACA
66 CCACACGAGCATATGAAGCCTCCACATGGGCCTATAGACCCCCACACGGCCTAGGCAATACCACA
119508415 CGGCCATGTGG
131 CGGCCATGTGG
* *
119508426 TTCTTAATTTTTAGTATTTTTGGACAGTGAGTTACATGGGCTGTTCACACGGGCGTGTACCCTCA
1 TTCTTAATTTTTAGCATTTTTGGACAGTGAGTTACACGGGCTGTTCACACGGGCGTGTACCCTCA
* * * * * *
119508491 CCACATGGGCATTTGAGGCCTCCACATGGGCGTGTAGACCCCCACACGGCC
66 CCACACGAGCATATGAAGCCTCCACATGGGCCTATAGACCCCCACACGGCC
119508542 ATGTGGTTCT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
141 104 1.00
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (141 bp):
TTCTTAATTTTTAGCATTTTTGGACAGTGAGTTACACGGGCTGTTCACACGGGCGTGTACCCTCA
CCACACGAGCATATGAAGCCTCCACATGGGCCTATAGACCCCCACACGGCCTAGGCAATACCACA
CGGCCATGTGG
Found at i:119514477 original size:36 final size:34
Alignment explanation
Indices: 119514393--119514487 Score: 86
Period size: 36 Copynumber: 2.7 Consensus size: 34
119514383 TTTAAAATAT
* *
119514393 TAGTAAAAT-TAATAATAAAATAAGAGTTATACAA
1 TAGTAAAATATAACAA-AAAATAAGAGTAATACAA
* *
119514427 TA-TCCAAATAATAACAACAAAATAATAGTAATACAA
1 TAGT-AAAAT-ATAACAA-AAAATAAGAGTAATACAA
119514463 TAGTAAAATGATAACAAAACAATAA
1 TAGTAAAAT-ATAACAAAA-AATAA
119514488 AAAATAAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
33 1 0.02
34 6 0.12
35 2 0.04
36 39 0.80
37 1 0.02
ACGTcount: A:0.61, C:0.08, G:0.06, T:0.24
Consensus pattern (34 bp):
TAGTAAAATATAACAAAAAATAAGAGTAATACAA
Found at i:119517951 original size:1 final size:1
Alignment explanation
Indices: 119517947--119517973 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
119517937 ATTTTTCTTG
119517947 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
119517974 GATTCGCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:119521454 original size:2 final size:2
Alignment explanation
Indices: 119521447--119521472 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
119521437 TGCTAGTGTC
119521447 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
119521473 TAAGAACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119533219 original size:25 final size:25
Alignment explanation
Indices: 119533191--119533241 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
119533181 TTGAATGTTT
119533191 TGTTTGTGGTTGCTAATGGTTGAAA
1 TGTTTGTGGTTGCTAATGGTTGAAA
119533216 TGTTTGTGGTTGCTAATGGTTGAAA
1 TGTTTGTGGTTGCTAATGGTTGAAA
119533241 T
1 T
119533242 ATTAGGGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.04, G:0.31, T:0.45
Consensus pattern (25 bp):
TGTTTGTGGTTGCTAATGGTTGAAA
Found at i:119533560 original size:26 final size:28
Alignment explanation
Indices: 119533502--119533562 Score: 74
Period size: 25 Copynumber: 2.3 Consensus size: 28
119533492 TTAATTCAAC
**
119533502 GTATAAAAATTAATTAATTTATTTTTTA
1 GTATAAAAATTAATTAATTTAACTTTTA
*
119533530 -AATAAAAA-TAA-TAATTTAACTTTTA
1 GTATAAAAATTAATTAATTTAACTTTTA
119533555 GTATAAAA
1 GTATAAAA
119533563 TCTTTCATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 12 0.43
26 9 0.32
27 7 0.25
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (28 bp):
GTATAAAAATTAATTAATTTAACTTTTA
Found at i:119537311 original size:26 final size:27
Alignment explanation
Indices: 119537260--119537324 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 27
119537250 TTAAAAGTTA
*
119537260 AATTATATTAATTAAAACATGATTAATT
1 AATTA-ATTAATTAAAACAAGATTAATT
119537288 AATTAATTAATT-AAACTAAG-TTAATT
1 AATTAATTAATTAAAAC-AAGATTAATT
*
119537314 AACT-ATTAATT
1 AATTAATTAATT
119537325 GAAGTATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 7 0.21
26 13 0.38
27 9 0.26
28 5 0.15
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (27 bp):
AATTAATTAATTAAAACAAGATTAATT
Found at i:119542088 original size:2 final size:2
Alignment explanation
Indices: 119542081--119542116 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
119542071 TTATTCTTAA
119542081 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119542117 TTTGTACGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119542466 original size:20 final size:21
Alignment explanation
Indices: 119542443--119542483 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
119542433 TATTGTGCCA
119542443 TATTTATT-GTTGTTGTATTT
1 TATTTATTCGTTGTTGTATTT
*
119542463 TATTTATTCGTTGTTTTATTT
1 TATTTATTCGTTGTTGTATTT
119542484 GTTATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.15, C:0.02, G:0.12, T:0.71
Consensus pattern (21 bp):
TATTTATTCGTTGTTGTATTT
Found at i:119545710 original size:16 final size:18
Alignment explanation
Indices: 119545671--119545704 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
119545661 TAAGTTTATA
119545671 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
119545688 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
119545705 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:119547703 original size:18 final size:19
Alignment explanation
Indices: 119547675--119547715 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
119547665 AGTTTTTATC
*
119547675 TTTTACTTGTTTCTTTTTG
1 TTTTACTTGTTTCTTTTTA
119547694 TTTT-CTTGTTTCTTTTTA
1 TTTTACTTGTTTCTTTTTA
119547712 TTTT
1 TTTT
119547716 TTACAATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.05, C:0.10, G:0.07, T:0.78
Consensus pattern (19 bp):
TTTTACTTGTTTCTTTTTA
Found at i:119548519 original size:26 final size:25
Alignment explanation
Indices: 119548493--119548875 Score: 238
Period size: 26 Copynumber: 14.6 Consensus size: 25
119548483 TATTTATTTA
* * *
119548493 TTTATATGTTATTTATATTAAGCTT
1 TTTATATATTATTTATTTTAAACTT
*
119548518 ATTTAT-T-TTATTTACTTTAAATCTT
1 -TTTATATATTATTTATTTTAAA-CTT
* *
119548543 TTCATATGTTATTTATTTTAAACTT
1 TTTATATATTATTTATTTTAAACTT
** *
119548568 ACT-TATCTTATTTATTTTAAATCTT
1 TTTATATATTATTTATTTTAAA-CTT
* *
119548593 TTCATATATTGTTTATTTTAAACTT
1 TTTATATATTATTTATTTTAAACTT
*
119548618 TTTATATATTATTTATTTTAAATATTTT
1 TTTATATATTATTTATTTT-AA-A-CTT
119548646 TTATATATATTATTTATTTTAAACTAT
1 TT-TATATATTATTTATTTTAAACT-T
*
119548673 TTTATATATTATCTATTTTAAA-TT
1 TTTATATATTATTTATTTTAAACTT
* * * *
119548697 TTCACATATAATATTCAATTTAAACTAT
1 TT--TATATATTATTTATTTTAAACT-T
* * *
119548725 TTTATATGTTATTCATTTTAAAAATT
1 TTTATATATTATTTATTTT-AAACTT
* * **
119548751 TTAAGCTGTTTTATTATTTATTTTAAGTTTT
1 TT----T-ATATATTATTTATTTTAA-ACTT
* *
119548782 TTTCATACATTATTTATTTGAAACTGTT
1 TTT-ATATATTATTTATTTTAAAC--TT
* * *
119548810 TTTTTATATTATTTACTTT-AAGTT
1 TTTATATATTATTTATTTTAAACTT
* *
119548834 CTTTCATTTATTATTTATTTTAAACCT
1 -TTT-ATATATTATTTATTTTAAACTT
119548861 TTT-TATATTATTTAT
1 TTTATATATTATTTAT
119548876 ATATTATTTT
Statistics
Matches: 278, Mismatches: 53, Indels: 54
0.72 0.14 0.14
Matches are distributed among these distances:
24 48 0.17
25 35 0.13
26 105 0.38
27 40 0.14
28 14 0.05
29 17 0.06
30 3 0.01
31 16 0.06
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (25 bp):
TTTATATATTATTTATTTTAAACTT
Found at i:119548550 original size:50 final size:50
Alignment explanation
Indices: 119548496--119548695 Score: 215
Period size: 50 Copynumber: 3.9 Consensus size: 50
119548486 TTATTTATTT
* * *
119548496 ATATGTTATTTATATTAAGCTTATTTATTTTATTTACTTTAAATCTTTTC
1 ATATGTTATTTATTTTAAACTTATTTATTTTATTTATTTTAAATCTTTTC
* *
119548546 ATATGTTATTTATTTTAAACTTACTTATCTTATTTATTTTAAATCTTTTC
1 ATATGTTATTTATTTTAAACTTATTTATTTTATTTATTTTAAATCTTTTC
* * * *
119548596 ATATATTGTTTATTTTAAACTT-TTTATATATTATTTATTTTAAATATTTTTTAT
1 ATATGTTATTTATTTTAAACTTATTTAT-T-TTATTTATTTT-AA-ATCTTTT-C
* *
119548650 ATATATTATTTATTTTAAAC-TATTTTATATATTATCTATTTTAAAT
1 ATATGTTATTTATTTTAAACTTA-TTTAT-T-TTATTTATTTTAAAT
119548696 TTTCACATAT
Statistics
Matches: 130, Mismatches: 13, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
49 4 0.03
50 65 0.50
51 11 0.08
52 2 0.02
53 9 0.07
54 21 0.16
55 18 0.14
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (50 bp):
ATATGTTATTTATTTTAAACTTATTTATTTTATTTATTTTAAATCTTTTC
Found at i:119548642 original size:16 final size:16
Alignment explanation
Indices: 119548617--119548673 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
119548607 ATTTTAAACT
*
119548617 TTTTATATATTATTTA
1 TTTTAAATATTATTTA
119548633 TTTTAAATA-T-TTT-
1 TTTTAAATATTATTTA
* *
119548646 TTATATATATTATTTA
1 TTTTAAATATTATTTA
119548662 TTTTAAACTATT
1 TTTTAAA-TATT
119548674 TTATATATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
13 7 0.22
14 4 0.12
15 4 0.12
16 13 0.41
17 4 0.12
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTAAATATTATTTA
Found at i:119548728 original size:80 final size:79
Alignment explanation
Indices: 119548575--119548731 Score: 185
Period size: 80 Copynumber: 2.0 Consensus size: 79
119548565 CTTACTTATC
* * * * * *
119548575 TTATTTATTTTAAATCTTTTCATATATTGTTTATTTTAAACTTTTTATATATTATTTATTTTAAA
1 TTATTTATTTTAAATCTTTTCATATATTATCTATTTTAAACTTTTCATATAATATTCAATTTAAA
119548640 TATTTTTTATATATA
66 TA-TTTTTATATATA
*
119548655 TTATTTATTTTAAA-CTATTTTATATATTATCTATTTTAAA-TTTTCACATATAATATTCAATTT
1 TTATTTATTTTAAATCT-TTTCATATATTATCTATTTTAAACTTTT--CATATAATATTCAATTT
119548718 AAACTA-TTTTATAT
63 AAA-TATTTTTATAT
119548732 GTTATTCATT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
79 6 0.09
80 42 0.64
81 16 0.24
82 2 0.03
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.60
Consensus pattern (79 bp):
TTATTTATTTTAAATCTTTTCATATATTATCTATTTTAAACTTTTCATATAATATTCAATTTAAA
TATTTTTATATATA
Found at i:119548853 original size:53 final size:51
Alignment explanation
Indices: 119548762--119548874 Score: 138
Period size: 53 Copynumber: 2.2 Consensus size: 51
119548752 TAAGCTGTTT
* * *
119548762 TATTATTTATTTTAAGTTTTTTTCATACATTATTTATTTGAAACTGTTTTTTTA
1 TATTATTTACTTTAAGTTTCTTTCATACATTATTTATTTGAAAC---CTTTTTA
** *
119548816 TATTATTTACTTTAAG-TTCTTTCATTTATTATTTATTTTAAACCTTTTTA
1 TATTATTTACTTTAAGTTTCTTTCATACATTATTTATTTGAAACCTTTTTA
119548866 TATTATTTA
1 TATTATTTA
119548875 TATATTATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
50 15 0.28
53 23 0.43
54 15 0.28
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.63
Consensus pattern (51 bp):
TATTATTTACTTTAAGTTTCTTTCATACATTATTTATTTGAAACCTTTTTA
Found at i:119556318 original size:22 final size:22
Alignment explanation
Indices: 119556293--119556334 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
119556283 TATATGGACT
119556293 TTTCTAATTTTTTTAAATAATA
1 TTTCTAATTTTTTTAAATAATA
119556315 TTTCTAATTTTTTTAAATAA
1 TTTCTAATTTTTTTAAATAA
119556335 CTTCTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTCTAATTTTTTTAAATAATA
Found at i:119558808 original size:2 final size:2
Alignment explanation
Indices: 119558801--119558840 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
119558791 CAAGTCTAAC
*
119558801 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119558841 AATGATTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:119559554 original size:2 final size:2
Alignment explanation
Indices: 119559503--119559534 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
119559493 AATTGAATAA
119559503 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
119559535 AGGATTGAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:119560931 original size:20 final size:21
Alignment explanation
Indices: 119560895--119560934 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
119560885 GGATACTATA
119560895 ATATTAATATATAATTTTTAC
1 ATATTAATATATAATTTTTAC
*
119560916 ATATTAAT-TTTAATTTTTA
1 ATATTAATATATAATTTTTA
119560935 ATTAGTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATTAATATATAATTTTTAC
Found at i:119566454 original size:3 final size:3
Alignment explanation
Indices: 119566446--119566486 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
119566436 ATTTAAACAT
119566446 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
119566487 TTTATATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:119568611 original size:20 final size:20
Alignment explanation
Indices: 119568581--119568624 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
119568571 AAGTAAAGGA
*
119568581 AAAAGGTTTTGAAGAGGAAAT
1 AAAAGGTTTTG-AGAGGAAAG
*
119568602 AAAA-GTTTTGGGAGGAAAG
1 AAAAGGTTTTGAGAGGAAAG
119568621 AAAA
1 AAAA
119568625 AGGGAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.52
20 6 0.29
21 4 0.19
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (20 bp):
AAAAGGTTTTGAGAGGAAAG
Found at i:119568611 original size:47 final size:49
Alignment explanation
Indices: 119568548--119568639 Score: 129
Period size: 47 Copynumber: 1.9 Consensus size: 49
119568538 CGGGGTTTAG
*
119568548 GGAAATTAAAAGTTTTGGG-GAGAAAG-TAAA-GGAAAAAGGTTTTGAAGA
1 GGAAATTAAAAGTTTTGGGAG-GAAAGAAAAAGGGAAAAA-GTTTTGAAGA
119568596 GGAAA-TAAAAGTTTTGGGAGGAAAGAAAAAGGGAAAAAGTTTTG
1 GGAAATTAAAAGTTTTGGGAGGAAAGAAAAAGGGAAAAAGTTTTG
119568640 GGAGTTTGGG
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
47 18 0.45
48 15 0.38
49 7 0.17
ACGTcount: A:0.47, C:0.00, G:0.32, T:0.22
Consensus pattern (49 bp):
GGAAATTAAAAGTTTTGGGAGGAAAGAAAAAGGGAAAAAGTTTTGAAGA
Found at i:119568625 original size:20 final size:21
Alignment explanation
Indices: 119568579--119568626 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
119568569 GAAAGTAAAG
119568579 GAAAAAGGTTTTGAAGAGGAAA
1 GAAAAA-GTTTTGAAGAGGAAA
* *
119568601 -TAAAAGTTTTG-GGAGGAAA
1 GAAAAAGTTTTGAAGAGGAAA
119568620 GAAAAAG
1 GAAAAAG
119568627 GGAAAAAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 7 0.32
20 11 0.50
21 4 0.18
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (21 bp):
GAAAAAGTTTTGAAGAGGAAA
Found at i:119571449 original size:46 final size:46
Alignment explanation
Indices: 119571397--119571578 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
119571387 GCTTTCCGAA
* *
119571397 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
119571443 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
119571489 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATTAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
119571535 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
119571579 TCGAAGATAA
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 122 0.99
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:119574197 original size:69 final size:70
Alignment explanation
Indices: 119574115--119574310 Score: 225
Period size: 70 Copynumber: 2.8 Consensus size: 70
119574105 TCCTTATTGA
* * *** *
119574115 AATACCATACCTACATTTCACAACTCGGTATGGGA-AATGCCATATCTACG-TTCTTGACTCAGT
1 AATACCATACCTACATTTCACAACTCGGTAT-GGATAATACCATACCTACGTTTCACAACTCAGC
*
119574178 ATATAT
65 ATAGAT
* * * *
119574184 AATACCATACCTACGTTTCACAACTCGGCATGGATGATACCATACCTACGTTTCACAACTCGGCA
1 AATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCAGCA
*
119574249 TGGAT
66 TAGAT
* * * *
119574254 GATACCATACCTACATTTCACAACTTGGTATAGATGATACCATACCTACGTTTCACA
1 AATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACA
119574311 CTTTTCTATG
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
68 3 0.03
69 41 0.38
70 64 0.59
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (70 bp):
AATACCATACCTACATTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCAGCA
TAGAT
Found at i:119574226 original size:35 final size:35
Alignment explanation
Indices: 119574185--119574310 Score: 216
Period size: 35 Copynumber: 3.6 Consensus size: 35
119574175 AGTATATATA
119574185 ATACCATACCTACGTTTCACAACTCGGCATGGATG
1 ATACCATACCTACGTTTCACAACTCGGCATGGATG
119574220 ATACCATACCTACGTTTCACAACTCGGCATGGATG
1 ATACCATACCTACGTTTCACAACTCGGCATGGATG
* * * *
119574255 ATACCATACCTACATTTCACAACTTGGTATAGATG
1 ATACCATACCTACGTTTCACAACTCGGCATGGATG
119574290 ATACCATACCTACGTTTCACA
1 ATACCATACCTACGTTTCACA
119574311 CTTTTCTATG
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 86 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (35 bp):
ATACCATACCTACGTTTCACAACTCGGCATGGATG
Found at i:119575012 original size:8 final size:8
Alignment explanation
Indices: 119574999--119575027 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
119574989 TTATGTTTAG
119574999 TATATTAT
1 TATATTAT
119575007 TATATTAT
1 TATATTAT
119575015 TATATTAT
1 TATATTAT
119575023 TATAT
1 TATAT
119575028 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:119575060 original size:5 final size:5
Alignment explanation
Indices: 119575050--119575095 Score: 85
Period size: 5 Copynumber: 9.4 Consensus size: 5
119575040 TTATGTTTTA
119575050 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
119575096 AAAATAAAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.10
5 36 0.90
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:119576386 original size:15 final size:15
Alignment explanation
Indices: 119576366--119576422 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
119576356 CGATGAATTT
119576366 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
119576381 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
119576396 ATTGAATTTATATTG
1 ATTGAATTTATATTG
119576411 ATTGAA-TTATAT
1 ATTGAATTTATAT
119576423 AATATACATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:119576823 original size:23 final size:21
Alignment explanation
Indices: 119576792--119576879 Score: 104
Period size: 21 Copynumber: 4.1 Consensus size: 21
119576782 GGCTTTATCG
* *
119576792 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
119576813 ATTTCAGGCACCTCGTGTGTCGT
1 A--TCAGGCACCTCATGTGTCGT
*
119576836 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
* *
119576857 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
119576878 AT
1 AT
119576880 ACTGATCAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
21 41 0.69
23 18 0.31
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (21 bp):
ATCAGGCACCTCATGTGTCGT
Found at i:119576840 original size:21 final size:21
Alignment explanation
Indices: 119576805--119576879 Score: 105
Period size: 21 Copynumber: 3.5 Consensus size: 21
119576795 AGGCACTTTA
119576805 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
119576828 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* **
119576849 TGTGTCGTATCAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
119576870 TGTGTCGTAT
1 TGTGTCGTAT
119576880 ACTGATCAGG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
21 40 0.82
23 9 0.18
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:119582168 original size:47 final size:47
Alignment explanation
Indices: 119582072--119582171 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 47
119582062 TTACACGGAT
* * *
119582072 CACATATCACACTGATGCCATAACCCAAATATGGTTTTATACAGTAG
1 CACATATCACACCGATGCCATAACCCAAATATGGTCTTATACAGAAG
* * * * *
119582119 CACATATCACACCGATGGCATATCCCAGATATGGTCTTATGCGGAAG
1 CACATATCACACCGATGCCATAACCCAAATATGGTCTTATACAGAAG
119582166 CACATA
1 CACATA
119582172 ATTACATCTC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATATCACACCGATGCCATAACCCAAATATGGTCTTATACAGAAG
Found at i:119582247 original size:54 final size:53
Alignment explanation
Indices: 119582124--119582336 Score: 295
Period size: 53 Copynumber: 4.0 Consensus size: 53
119582114 AGTAGCACAT
* * * * * * *
119582124 ATCACACCGATGGCATATCCCAGATATGGTCTTATGCGGAAGCACATAATTAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATGATCAC
* * *
119582177 ATCTCTCCGATGCCATAGCCCAGTTATGGTCTTATACGGAAATCACATGATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGG-AATCACATGATCAC
* *
119582231 ATCACACCGATGCCATAGTCCAGCTATGGTCTTATACGAAATCACATGATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATGATCAC
119582284 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGG-ATCACAT-ATCAC
1 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATGATCAC
119582335 AT
1 AT
119582337 GTTGCCATGG
Statistics
Matches: 143, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
51 7 0.05
52 7 0.05
53 84 0.59
54 45 0.31
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (53 bp):
ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATGATCAC
Found at i:119582264 original size:107 final size:104
Alignment explanation
Indices: 119582124--119582336 Score: 293
Period size: 107 Copynumber: 2.0 Consensus size: 104
119582114 AGTAGCACAT
* * * * * *
119582124 ATCACACCGATGGCATATCCCAGATATGGTCTTATGCGGAAGCACATAATTACATCTCTCCGATG
1 ATCACACCGATGCCATATCCCAGATATGGTCTTATACGAAAGCACATAATCACATCACACCGATG
*
119582189 CCATAGCCCAGTTATGGTCTTATACGGAAATCACATGATCAC
66 CCATAGCCCAGCTATGGTCTTATACGG--ATCACAT-ATCAC
* * *
119582231 ATCACACCGATGCCATAGT-CCAGCTATGGTCTTATACGAAATCACATGATCACATCACACCGAT
1 ATCACACCGATGCCATA-TCCCAGATATGGTCTTATACGAAAGCACATAATCACATCACACCGAT
119582295 GCCATAGCCCAGCTATGGTCTTATACGGATCACATATCAC
65 GCCATAGCCCAGCTATGGTCTTATACGGATCACATATCAC
119582335 AT
1 AT
119582337 GTTGCCATGG
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
104 7 0.07
105 7 0.07
107 80 0.84
108 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (104 bp):
ATCACACCGATGCCATATCCCAGATATGGTCTTATACGAAAGCACATAATCACATCACACCGATG
CCATAGCCCAGCTATGGTCTTATACGGATCACATATCAC
Found at i:119584054 original size:20 final size:21
Alignment explanation
Indices: 119584020--119584073 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
119584010 TGATGATATT
*
119584020 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
119584041 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
119584061 TTTTATTATTTTA
1 TTATATTATTTTA
119584074 TTATTAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:119586219 original size:46 final size:46
Alignment explanation
Indices: 119586167--119586347 Score: 238
Period size: 46 Copynumber: 3.9 Consensus size: 46
119586157 GTGTGCTCTC
*** *
119586167 TGATATGAAATGTGTAAGACCATGGTCGAAAGATACCATGGCAATG
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAATG
119586213 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAATG
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAATG
**
119586259 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAATG
* ** * * *
119586305 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATG-AAATGAACAAGACCATGGTTGAAAGATACCATGGCA
119586348 TCATGTCAAA
Statistics
Matches: 122, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 121 0.99
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAATG
Found at i:119588961 original size:83 final size:83
Alignment explanation
Indices: 119588785--119588946 Score: 306
Period size: 83 Copynumber: 2.0 Consensus size: 83
119588775 CAATTTAGGC
* *
119588785 CCTGGACTTGATAATTATTCCCACATTAGGGTTTGAACTTTTTTTATCCAAATTAGTCCCTGAAC
1 CCTGGACTTGATAATTATTCCCACATTAGGGCTTGAACTTTTTTTATCCAAATTAGTCCCTAAAC
119588850 TTGACAATTATTCTAATA
66 TTGACAATTATTCTAATA
119588868 CCTGGACTTGATAATTATTCCCACATTAGGGCTTGAACTTTTTTTATCCAAATTAGTCCCTAAAC
1 CCTGGACTTGATAATTATTCCCACATTAGGGCTTGAACTTTTTTTATCCAAATTAGTCCCTAAAC
119588933 TTGACAATTATTCT
66 TTGACAATTATTCT
119588947 CATATTGAGG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 77 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (83 bp):
CCTGGACTTGATAATTATTCCCACATTAGGGCTTGAACTTTTTTTATCCAAATTAGTCCCTAAAC
TTGACAATTATTCTAATA
Found at i:119590258 original size:19 final size:19
Alignment explanation
Indices: 119590234--119590272 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
119590224 TAAAATTAAG
*
119590234 TAATCAACACGTATTAATA
1 TAATCAACACATATTAATA
119590253 TAATCAACACATATTAATA
1 TAATCAACACATATTAATA
119590272 T
1 T
119590273 TTAGTAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.33
Consensus pattern (19 bp):
TAATCAACACATATTAATA
Found at i:119591139 original size:48 final size:48
Alignment explanation
Indices: 119591084--119591179 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
119591074 ATTAATGGTG
* * *
119591084 TTTGAAAATGACCAAACTGTAGGAGCTACAAAACTTTCTTTTGATCTT
1 TTTGAAAAAGACCAAAATGCAGGAGCTACAAAACTTTCTTTTGATCTT
*
119591132 TTTGAAAAAGACCAAAATGCAGGAGCTATAAAACTTTCTTTTGATCTT
1 TTTGAAAAAGACCAAAATGCAGGAGCTACAAAACTTTCTTTTGATCTT
119591180 GTAATTGCCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (48 bp):
TTTGAAAAAGACCAAAATGCAGGAGCTACAAAACTTTCTTTTGATCTT
Found at i:119594858 original size:29 final size:29
Alignment explanation
Indices: 119594824--119594901 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
119594814 GTGACGAGAT
* *
119594824 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
119594853 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
119594882 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
119594902 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:119601123 original size:151 final size:149
Alignment explanation
Indices: 119600698--119601210 Score: 804
Period size: 151 Copynumber: 3.4 Consensus size: 149
119600688 TATTTTTAAA
* *
119600698 ATTTTTAAAATTTTCGAATCTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTTTATTAT
1 ATTTTTAAAATTTTCGAATTTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTATATTAT
*
119600763 TTTAGTACATAATGTTTCAAATATATTATTTTAGTGTTTTTTATATTAATTTAGTAAATAACCCT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGT-TTTTTTATATTAATTTAGTAAATAACCCT
*
119600828 GATTTTGGCCATTTGTTCT-T
130 GATTTTGACCATTTGTT-TGT
*
119600848 ATTTTTAAAATTTTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTATATTAT
1 ATTTTTAAAATTTTCGAATTTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTATATTAT
* *
119600913 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGAAAATAACCTTG
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAATAACCCTG
*
119600978 ATTTTGACCCTTTGTTTGT
131 ATTTTGACCATTTGTTTGT
* *
119600997 ATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTTTATATT
1 ATTTTTAAAATTTTCGAATTTTATTTTTTAAAATATACTATTTTCATATTTTA--TTTTTATATT
*
119601062 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTATATTAATTTAGTAAATAACCC
64 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAATAACCC
* *
119601127 TAATTTTGTCCATTTGTTTGT
129 TGATTTTGACCATTTGTTTGT
* *
119601148 ATTTTTAAAATTTTC-AGA--TT-TTTTTT-AAATATACTATATTCGTATTTTATTTTTATATTA
1 ATTTTTAAAATTTTCGA-ATTTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTATATTA
119601208 TTT
65 TTT
119601211 AAAAAAAACC
Statistics
Matches: 338, Mismatches: 21, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
145 14 0.04
147 21 0.06
148 7 0.02
149 95 0.28
150 96 0.28
151 105 0.31
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (149 bp):
ATTTTTAAAATTTTCGAATTTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTATATTAT
TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAATAACCCTG
ATTTTGACCATTTGTTTGT
Found at i:119601280 original size:17 final size:16
Alignment explanation
Indices: 119601248--119601321 Score: 78
Period size: 16 Copynumber: 4.6 Consensus size: 16
119601238 CAAAAAAAAA
119601248 TTATTTTTTTCATATT
1 TTATTTTTTTCATATT
*
119601264 TTATTTCTTTTCGTATT
1 TTATTT-TTTTCATATT
**
119601281 TTA-TTTTTTCATTAAG
1 TTATTTTTTTCA-TATT
* *
119601297 ATATTTTTTTAATATT
1 TTATTTTTTTCATATT
119601313 TTATTTTTT
1 TTATTTTTT
119601322 ATACTATTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
15 5 0.11
16 22 0.48
17 19 0.41
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.72
Consensus pattern (16 bp):
TTATTTTTTTCATATT
Found at i:119601329 original size:17 final size:16
Alignment explanation
Indices: 119601248--119601331 Score: 69
Period size: 16 Copynumber: 5.1 Consensus size: 16
119601238 CAAAAAAAAA
*
119601248 TTATTTTTTTCATATT
1 TTATTTTTTTAATATT
**
119601264 TTATTTCTTTTCGTATT
1 TTATTT-TTTTAATATT
* * **
119601281 TTATTTTTTCATTAAG
1 TTATTTTTTTAATATT
*
119601297 ATATTTTTTTAATATT
1 TTATTTTTTTAATATT
*
119601313 TTATTTTTTATACTATT
1 TTATTTTTT-TAATATT
119601330 TT
1 TT
119601332 TGTAAAATAG
Statistics
Matches: 53, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
16 30 0.57
17 23 0.43
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.70
Consensus pattern (16 bp):
TTATTTTTTTAATATT
Found at i:119601676 original size:3 final size:3
Alignment explanation
Indices: 119601670--119601724 Score: 55
Period size: 3 Copynumber: 19.0 Consensus size: 3
119601660 ATAATAATAA
119601670 TTC TTC TT- TTC TT- TTC TTC TT- TTC TTC TTTC TT- TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC
*
119601712 TCC TTC TTTC TTC
1 TTC TTC -TTC TTC
119601725 CCAAAATGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
2 8 0.18
3 30 0.68
4 6 0.14
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:119601721 original size:21 final size:20
Alignment explanation
Indices: 119601672--119601723 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
119601662 AATAATAATT
*
119601672 CTTCTTTTCTTTTCTTCTTTT
1 CTTC-TTTCTTTTCTTCTTTC
119601693 CTTCTTTCTTTTCTTCTTCTC
1 CTTCTTTCTTTTCTTCTT-TC
119601714 CTTCTTTCTT
1 CTTCTTTCTT
119601724 CCCAAAATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (20 bp):
CTTCTTTCTTTTCTTCTTTC
Found at i:119601722 original size:25 final size:25
Alignment explanation
Indices: 119601673--119601723 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
119601663 ATAATAATTC
* *
119601673 TTCTTTTCTTTTCTTCTTTTCTTCT
1 TTCTTTTCTTTTCTCCTTCTCTTCT
119601698 TTCTTTTCTTCTTCTCCTTCT-TTCT
1 TTCTTTTCTT-TTCTCCTTCTCTTCT
119601723 T
1 T
119601724 CCCAAAATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (25 bp):
TTCTTTTCTTTTCTCCTTCTCTTCT
Found at i:119602010 original size:22 final size:23
Alignment explanation
Indices: 119601960--119602010 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
119601950 CATTTTCGTC
119601960 ATTAGT-TTTTGCCTTATACCAT
1 ATTAGTATTTTGCCTTATACCAT
* *
119601982 -TTAAGTATTTTG-TTTATACTAT
1 ATT-AGTATTTTGCCTTATACCAT
119602004 ATTAGTA
1 ATTAGTA
119602011 AAAAACCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
21 2 0.08
22 15 0.62
23 7 0.29
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (23 bp):
ATTAGTATTTTGCCTTATACCAT
Found at i:119604575 original size:3 final size:3
Alignment explanation
Indices: 119604567--119604764 Score: 150
Period size: 3 Copynumber: 66.7 Consensus size: 3
119604557 TAATATTTCA
* * ** * *
119604567 ATT ATT ATT ATT GTT ATT ATT TTT ATT ACC ATT ATT ATT ACT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
119604615 ATT ATT TTT ATT ACT ATT ATT ACT ACT ATT -TT CGTT ATT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
* * * * * *
119604660 ATT ACT ATT ATT ATT ACT ATT TTT GTT ATT ATT ATT ATT ACT ATT -GT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
119604707 ATT ATT ACT ATT TTT GTT ATT ATT ATT ATT ACT ATT -GT ATT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
119604754 ATT ATT ATT AT
1 ATT ATT ATT AT
119604765 ATTTTCTTTC
Statistics
Matches: 148, Mismatches: 43, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
2 4 0.03
3 142 0.96
4 2 0.01
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:119604920 original size:26 final size:26
Alignment explanation
Indices: 119604846--119604921 Score: 66
Period size: 26 Copynumber: 2.9 Consensus size: 26
119604836 ACATGTATTT
* **
119604846 TTTATTTTATTTTTATTTTTTATATCA
1 TTTATTTTATTTATATCATTT-TATCA
*
119604873 -TTATTCTT-GTTATCATCATTTTATCA
1 TTTATT-TTATTTAT-ATCATTTTATCA
*
119604899 TTTATTTTATTTATATCCTTTTA
1 TTTATTTTATTTATATCATTTTA
119604922 AATAATTTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
26 23 0.59
27 16 0.41
ACGTcount: A:0.22, C:0.09, G:0.01, T:0.67
Consensus pattern (26 bp):
TTTATTTTATTTATATCATTTTATCA
Found at i:119614075 original size:71 final size:71
Alignment explanation
Indices: 119613974--119614105 Score: 174
Period size: 71 Copynumber: 1.9 Consensus size: 71
119613964 GGTCACCTAT
* * * * * * *
119613974 TAGTAATTTATTGTTGTTGCATACTCATTTCAGTTACTCAATTTTAATAAATCTTTATTTTAGTC
1 TAGTAATTTAGTATTATTGCATACTCATTTCAATCACACAAATTTAATAAATCTTTATTTTAGTC
119614039 CGTTGC
66 CGTTGC
* * *
119614045 TAGTAATTTAGTATTATTGTATACTTATTTCAATCACACAAATTTAATAAATTTTTATTTT
1 TAGTAATTTAGTATTATTGCATACTCATTTCAATCACACAAATTTAATAAATCTTTATTTT
119614106 TGTAAATTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
71 51 1.00
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.50
Consensus pattern (71 bp):
TAGTAATTTAGTATTATTGCATACTCATTTCAATCACACAAATTTAATAAATCTTTATTTTAGTC
CGTTGC
Found at i:119614129 original size:17 final size:18
Alignment explanation
Indices: 119614097--119614142 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
119614087 TTTAATAAAT
*
119614097 TTTTATTTTTGTAAATT-A
1 TTTTATTTTT-AAAATTAA
*
119614115 TTTTCTTTTTAAAATTAA
1 TTTTATTTTTAAAATTAA
119614133 TTTTATTTTT
1 TTTTATTTTT
119614143 TTTAAAAGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTTATTTTTAAAATTAA
Found at i:119614326 original size:22 final size:22
Alignment explanation
Indices: 119614301--119614355 Score: 94
Period size: 21 Copynumber: 2.5 Consensus size: 22
119614291 AATCTAAATT
*
119614301 TTTCCTATAAAAACTCATGTAA
1 TTTCCTGTAAAAACTCATGTAA
119614323 TTTCCTGT-AAAACTCATGTAA
1 TTTCCTGTAAAAACTCATGTAA
119614344 TTTCCTGTAAAA
1 TTTCCTGTAAAA
119614356 TTTCAAGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 21 0.68
22 10 0.32
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TTTCCTGTAAAAACTCATGTAA
Found at i:119621736 original size:20 final size:20
Alignment explanation
Indices: 119621711--119621749 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
119621701 AACGGCCTTA
119621711 AACAAGTAAATTACAAAACC
1 AACAAGTAAATTACAAAACC
119621731 AACAAGTAAATTACAAAAC
1 AACAAGTAAATTACAAAAC
119621750 TAAGTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.18, G:0.05, T:0.15
Consensus pattern (20 bp):
AACAAGTAAATTACAAAACC
Found at i:119624437 original size:16 final size:16
Alignment explanation
Indices: 119624416--119624449 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
119624406 AAAAAATTAT
119624416 TTTTATACTTGCCTAA
1 TTTTATACTTGCCTAA
119624432 TTTTATACTTGCCTAA
1 TTTTATACTTGCCTAA
119624448 TT
1 TT
119624450 AAAATATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.18, G:0.06, T:0.53
Consensus pattern (16 bp):
TTTTATACTTGCCTAA
Found at i:119625679 original size:15 final size:15
Alignment explanation
Indices: 119625659--119625689 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
119625649 GTGAGTGAAG
119625659 GAGAAGAAAAAGAAA
1 GAGAAGAAAAAGAAA
*
119625674 GAGAAGAAAGAGAAA
1 GAGAAGAAAAAGAAA
119625689 G
1 G
119625690 TGAGGGCGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (15 bp):
GAGAAGAAAAAGAAA
Found at i:119625975 original size:27 final size:27
Alignment explanation
Indices: 119625945--119626040 Score: 86
Period size: 27 Copynumber: 3.6 Consensus size: 27
119625935 GGTGTGGTGT
* *
119625945 CTATTTGATAGACGGCACCGGT-GATCC
1 CTATCTGATAGGCGGCACCGGTCG-TCC
* *
119625972 CTATCTGATAGGCGGCACTGGTCGTGC
1 CTATCTGATAGGCGGCACCGGTCGTCC
* ** * *
119625999 CTATGTGATAGGCGGCATTGGTGGTGC
1 CTATCTGATAGGCGGCACCGGTCGTCC
*
119626026 TTATCTGATAGGCGG
1 CTATCTGATAGGCGG
119626041 TGCACCCTGT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.33, T:0.28
Consensus pattern (27 bp):
CTATCTGATAGGCGGCACCGGTCGTCC
Found at i:119626365 original size:19 final size:20
Alignment explanation
Indices: 119626330--119626367 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
119626320 TTGAGAATGT
*
119626330 TATATTGTAAAATTTTTTAA
1 TATATTGTAAAAGTTTTTAA
119626350 TATATT-TAAAAGTTTTTA
1 TATATTGTAAAAGTTTTTA
119626368 TGTTAGTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TATATTGTAAAAGTTTTTAA
Found at i:119629373 original size:62 final size:62
Alignment explanation
Indices: 119629274--119629439 Score: 260
Period size: 62 Copynumber: 2.7 Consensus size: 62
119629264 CAATGTACCT
* * *
119629274 AATTTATATTATAAAGTTTGTTTCAATTTTTAGTGTTGTAATTTATTTAACTTATATAACAA
1 AATTTATATTACAAAGTTTGTTACAATTTTTAGTGTTGTAATATATTTAACTTATATAACAA
* * *
119629336 AATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATATATTTAATTTATATAACAA
1 AATTTATATTACAAAGTTTGTTACAATTTTTAGTGTTGTAATATATTTAACTTATATAACAA
* *
119629398 AATTTATATTACAAAGTTTGTTACAAGTTTTAGTGTTTTAAT
1 AATTTATATTACAAAGTTTGTTACAATTTTTAGTGTTGTAAT
119629440 GTTGTAATGT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.50
Consensus pattern (62 bp):
AATTTATATTACAAAGTTTGTTACAATTTTTAGTGTTGTAATATATTTAACTTATATAACAA
Found at i:119630688 original size:14 final size:14
Alignment explanation
Indices: 119630669--119630695 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
119630659 CAAATTACAT
119630669 GTTAGAATAGTATC
1 GTTAGAATAGTATC
119630683 GTTAGAATAGTAT
1 GTTAGAATAGTAT
119630696 AATTAGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (14 bp):
GTTAGAATAGTATC
Found at i:119630701 original size:14 final size:14
Alignment explanation
Indices: 119630670--119630703 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
119630660 AAATTACATG
**
119630670 TTAGAATAGTATCG
1 TTAGAATAGTATAA
119630684 TTAGAATAGTATAA
1 TTAGAATAGTATAA
119630698 TTAGAA
1 TTAGAA
119630704 AAAAAATGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.35
Consensus pattern (14 bp):
TTAGAATAGTATAA
Found at i:119636748 original size:3 final size:3
Alignment explanation
Indices: 119636740--119637152 Score: 152
Period size: 3 Copynumber: 136.3 Consensus size: 3
119636730 ATCATTTTAC
** **
119636740 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCG TTA GCA TTA TT- TTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
* * *
119636788 TTA CTA TTA -TA TT- TTA TTGA TTA -TA TTA CTA -TA TTCG TTA -TA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TT-A TTA TTA
* * * ** * * *
119636830 TTA TCA TTA TTA TTC TTA CTA TCG TTA TTA TTA CTA CTA CTA TTA TCT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
** * * * *
119636878 TTA TTA ACA -TA TTA TTA TTA TTT TTA CTA -TA CTA TTA TTA TTCCC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A
* * * * ** *
119636923 TTT TTT TTA CTTA CTA ATA TTA TTGA -TA TTA ACA TATG TTAA TGTA
1 TTA TTA TTA -TTA TTA TTA TTA TT-A TTA TTA TTA T-TA TT-A T-TA
* *
119636969 TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTCT TTA TGTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA T-TA T-TA
* ** * * *
119637017 TTA GTA TT- TATA TTA TCG TTA TTA TTA CTA TTG TTA ATA TT- TGTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * * *
119637062 TTA CTA TTA TTT TTA TTCC TT- TTA TTTA TTA TCA ATA -TA ATA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * *
119637107 TTA TTG CTA TTG TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
119637153 CATCATCATC
Statistics
Matches: 301, Mismatches: 78, Indels: 62
0.68 0.18 0.14
Matches are distributed among these distances:
2 23 0.08
3 244 0.81
4 31 0.10
5 3 0.01
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:119636903 original size:23 final size:23
Alignment explanation
Indices: 119636861--119636919 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
119636851 TCGTTATTAT
* * *
119636861 TACTACTACTATTATCTTTATTA
1 TACTATTATTATTATCTTTACTA
*
119636884 -ACATATTATTATTATTTTTACTA
1 TAC-TATTATTATTATCTTTACTA
119636907 TACTATTATTATT
1 TACTATTATTATT
119636920 CCCTTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 2 0.07
23 26 0.87
24 2 0.07
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (23 bp):
TACTATTATTATTATCTTTACTA
Found at i:119638322 original size:128 final size:132
Alignment explanation
Indices: 119637960--119638394 Score: 356
Period size: 130 Copynumber: 3.3 Consensus size: 132
119637950 ATGAATAAGC
* ** * * * * * *
119637960 GCAACCCAGCACAATAGGGCTCGATTCTCA--AATCGCCAAACATCGAACATCGCCTTCATTTTG
1 GCAACCCAACACGTTAGGGCACGATTC-CACGAATTGCCAAATATCGCATATCGCCTTCGTTTT-
* ** *
119638023 AAAGG-TTTTTAATAA-ACATGAATGCAAA-CCT-AAAGGAATATTCGATTGTTTTAAACAAACG
64 AAAGGATTTTTAA-AAGACATGAGTG-AAATTTTGAAAGG-ATATTCGATTATTTTAAACAAACG
*
119638084 -AGAAATC
126 CA-AAATT
* * * * * * * * **
119638091 ACAACCCAGCACGATAAGGCATGATT-CTCGAATTGCCAAACACCG-AGTATTACCTTCGTTTTA
1 GCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCGCA-TATCGCCTTCGTTTTA
* * * * * *
119638154 AAGGATTTTTAGAAGGCCTGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAAC-AA-TCAAA
65 AAGGATTTTTAAAAGACATGAGTGAAATTTTGAAAGGATATTCGATTATTTTAAACAAACGCAAA
119638217 ATT
130 ATT
*
119638220 GCAACCCAACACGTTATGGCACGATTCCACGAATTGCCAAATATCGCATATCGCCTTCG-TTTAA
1 GCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCGCATATCGCCTTCGTTTTAA
* * * * * * *
119638284 GGGA-TTTTAAAAGACATGAGTGAAATTTTGAAATGATATTCGATTGTTTTGAGCAAACGCGAAG
66 AGGATTTTTAAAAGACATGAGTGAAATTTTGAAAGGATATTCGATTATTTTAAACAAACGCAAAA
119638348 TT
131 TT
* *
119638350 GCAACCCAACACGTTAGGGCACGATTCCGCGAATTGTCAAATATC
1 GCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATC
119638395 AAATCTCATC
Statistics
Matches: 243, Mismatches: 49, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
128 41 0.17
129 36 0.15
130 86 0.35
131 76 0.31
132 4 0.02
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.28
Consensus pattern (132 bp):
GCAACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCGCATATCGCCTTCGTTTTAA
AGGATTTTTAAAAGACATGAGTGAAATTTTGAAAGGATATTCGATTATTTTAAACAAACGCAAAA
TT
Found at i:119639315 original size:21 final size:21
Alignment explanation
Indices: 119639301--119639342 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 21
119639291 TAAATTTATA
119639301 ACAAAACAATATAAACAATAT
1 ACAAAACAATATAAACAATAT
119639322 ACAAAACAATATGGAAACAAT
1 ACAAAACAATAT--AAACAAT
119639343 TTGAAAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.64, C:0.14, G:0.05, T:0.17
Consensus pattern (21 bp):
ACAAAACAATATAAACAATAT
Found at i:119642406 original size:25 final size:26
Alignment explanation
Indices: 119642329--119642407 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 26
119642319 AAAATTACCT
*
119642329 TTTCTTTTCTAT-TTTTTCCCTTCTC
1 TTTCTTTTCTTTCTTTTTCCCTTCTC
119642354 TTTCTCTTTCTCTCTCTCCATTTT-CCTTCTC
1 TTTCT-TTTCT-T-TCT---TTTTCCCTTCTC
119642385 TTT-TTTTCTTTCTTTTTCCCTTC
1 TTTCTTTTCTTTCTTTTTCCCTTC
119642408 CCTTCCTGCC
Statistics
Matches: 45, Mismatches: 1, Indels: 16
0.73 0.02 0.26
Matches are distributed among these distances:
24 4 0.09
25 10 0.22
26 5 0.11
27 3 0.07
28 2 0.04
29 6 0.13
30 1 0.02
31 10 0.22
32 4 0.09
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.66
Consensus pattern (26 bp):
TTTCTTTTCTTTCTTTTTCCCTTCTC
Found at i:119642823 original size:27 final size:27
Alignment explanation
Indices: 119642793--119642844 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
119642783 TGCTACATCT
*
119642793 GCCAACTCCTCCACCAGTGCCGCCTGC
1 GCCAACTCCTCCACCAATGCCGCCTGC
*
119642820 GCCAACTCCTTCACCAATGCCGCCT
1 GCCAACTCCTCCACCAATGCCGCCT
119642845 CTTCTCTAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.50, G:0.15, T:0.17
Consensus pattern (27 bp):
GCCAACTCCTCCACCAATGCCGCCTGC
Found at i:119643621 original size:80 final size:80
Alignment explanation
Indices: 119643488--119643650 Score: 310
Period size: 80 Copynumber: 2.0 Consensus size: 80
119643478 AAAGAAAGAG
119643488 TATCTTCACCCTTATTCCCGATGCCAATAAGCCTTTAAAGAATTGTTTCTAATAATTCTCAAAGT
1 TATCTTCACCCTTATTCCCGATGCCAATAAGCCTTTAAAGAATTGTTTCTAATAATTCTCAAAGT
119643553 -ACCATATGTCATCCA
66 GA-CATATGTCATCCA
119643568 TATCTTCACCCTTATTCCCGATGCCAATAAGCCTTTAAAGAATTGTTTCTAATAATTCTCAAAGT
1 TATCTTCACCCTTATTCCCGATGCCAATAAGCCTTTAAAGAATTGTTTCTAATAATTCTCAAAGT
119643633 GACATATGTCATCCA
66 GACATATGTCATCCA
119643648 TAT
1 TAT
119643651 GTTAATTTAT
Statistics
Matches: 82, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
80 81 0.99
81 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (80 bp):
TATCTTCACCCTTATTCCCGATGCCAATAAGCCTTTAAAGAATTGTTTCTAATAATTCTCAAAGT
GACATATGTCATCCA
Found at i:119645352 original size:2 final size:2
Alignment explanation
Indices: 119645341--119645385 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
119645331 TAACTTCTAT
119645341 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
119645382 TA TA
1 TA TA
119645386 AACATGGCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:119648292 original size:251 final size:251
Alignment explanation
Indices: 119647838--119648337 Score: 892
Period size: 251 Copynumber: 2.0 Consensus size: 251
119647828 TCGACGCCAT
*
119647838 ACGGGCGTGTGGTTACTGGTGTGGTAAGTAGTGTGGTCGACGAAGACATGGCCGTGTGCAGTACA
1 ACGGGCGTGTGGTTACTGGTGTGGTAAGCAGTGTGGTCGACGAAGACATGGCCGTGTGCAGTACA
* *
119647903 CAGCCATGTGGTGGCTAGAGTGTGGCCGTGTTGCTAGACGGGCTAAACCAAACTGGGCGTGTGGG
66 CAGCCATGTGGTGGCTAGAGTGTGGCCGTGTTGCCAGACAGGCTAAACCAAACTGGGCGTGTGGG
119647968 CCCACACAGGCAAGTGGATTCTGGGCCAAGTCGTGTGATCCACATTGCTAAGGCCAATCTGGGCG
131 CCCACACAGGCAAGTGGATTCTGGGCCAAGTCGTGTGATCCACATTGCTAAGGCCAATCTGGGCG
* *
119648033 TGTGGGCCCATTTATCTGAATTTTTCCCTAGGGTTGCACTGGTCGTCCCAAATGAC
196 TATGGGCCCATTTATCTAAATTTTTCCCTAGGGTTGCACTGGTCGTCCCAAATGAC
* * *
119648089 ACGGGTGTGTGGTTACTGGTGTGGTAGGCCGTGTGGTCGACGAAGACATGGCCGTGTGCAGTACA
1 ACGGGCGTGTGGTTACTGGTGTGGTAAGCAGTGTGGTCGACGAAGACATGGCCGTGTGCAGTACA
* *
119648154 CAGCCATGTGGTGGCTAGAGTGTGGCCGTGTTGCCAGACAGGTTAAACCAAATTGGGCGTGTGGG
66 CAGCCATGTGGTGGCTAGAGTGTGGCCGTGTTGCCAGACAGGCTAAACCAAACTGGGCGTGTGGG
*
119648219 CCCACACAGGCATGTGGATTCTGGGCCAAGTCGTGTGATCCACATTGCTAAGGCCAATCTGGGCG
131 CCCACACAGGCAAGTGGATTCTGGGCCAAGTCGTGTGATCCACATTGCTAAGGCCAATCTGGGCG
*
119648284 TATGGGCCCATTTATCTAAATTTTTCCCTAGGGTTGTACTGGTCGTCCCAAATG
196 TATGGGCCCATTTATCTAAATTTTTCCCTAGGGTTGCACTGGTCGTCCCAAATG
119648338 TCTGTGGGCC
Statistics
Matches: 237, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
251 237 1.00
ACGTcount: A:0.20, C:0.22, G:0.33, T:0.25
Consensus pattern (251 bp):
ACGGGCGTGTGGTTACTGGTGTGGTAAGCAGTGTGGTCGACGAAGACATGGCCGTGTGCAGTACA
CAGCCATGTGGTGGCTAGAGTGTGGCCGTGTTGCCAGACAGGCTAAACCAAACTGGGCGTGTGGG
CCCACACAGGCAAGTGGATTCTGGGCCAAGTCGTGTGATCCACATTGCTAAGGCCAATCTGGGCG
TATGGGCCCATTTATCTAAATTTTTCCCTAGGGTTGCACTGGTCGTCCCAAATGAC
Found at i:119661771 original size:38 final size:37
Alignment explanation
Indices: 119661727--119661827 Score: 95
Period size: 38 Copynumber: 2.7 Consensus size: 37
119661717 TAATTATGTA
119661727 AATATATATAATTTAATTATTAATTACTT-TTTTATTT
1 AATATATATAATTTAATTATTAATTA-TTATTTTATTT
* * *
119661764 AAGTATATAGATATTT-ATTATTTATTATTATTCTA-TT
1 AA-TATATATA-ATTTAATTATTAATTATTATTTTATTT
119661801 AA-AT-TATAATTTATATTATTAAATTAT
1 AATATATATAATTTA-ATTATT-AATTAT
119661828 GATAAATATT
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
33 4 0.08
34 3 0.06
35 8 0.15
36 5 0.09
37 8 0.15
38 21 0.40
39 4 0.08
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (37 bp):
AATATATATAATTTAATTATTAATTATTATTTTATTT
Found at i:119661820 original size:20 final size:20
Alignment explanation
Indices: 119661797--119661841 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
119661787 ATTATTATTC
**
119661797 TATTAAATTATAATTTATAT
1 TATTAAATTATAATAAATAT
*
119661817 TATTAAATTATGATAAATAT
1 TATTAAATTATAATAAATAT
119661837 TATTA
1 TATTA
119661842 TTAAAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
TATTAAATTATAATAAATAT
Found at i:119661826 original size:25 final size:26
Alignment explanation
Indices: 119661778--119661846 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 26
119661768 ATATAGATAT
* **
119661778 TTATTATTTATTATTATTCTATTAAA
1 TTATAATTTATTATTATTAAATTAAA
119661804 TTATAATTTA-TATTATTAAATT--A
1 TTATAATTTATTATTATTAAATTAAA
* *
119661827 TGATAA-ATATTATTATTAAA
1 TTATAATTTATTATTATTAAA
119661847 AATAAGTTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 2 0.05
23 16 0.43
25 10 0.27
26 9 0.24
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (26 bp):
TTATAATTTATTATTATTAAATTAAA
Found at i:119662119 original size:13 final size:14
Alignment explanation
Indices: 119662101--119662138 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
119662091 TTATAAAGTT
119662101 AATAAAATAAAAG-
1 AATAAAATAAAAGA
* *
119662114 AATAAAAGAAATGA
1 AATAAAATAAAAGA
119662128 AATAAAATAAA
1 AATAAAATAAA
119662139 GTAAAGAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (14 bp):
AATAAAATAAAAGA
Found at i:119662952 original size:40 final size:40
Alignment explanation
Indices: 119662906--119662984 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
119662896 TTATTGGATT
* ** *
119662906 CTGAATATTGTTTTGAATATCGAATTGAACTGTGAAATTA
1 CTGAATAATGTTACGAATATCGAATTGAACTGTAAAATTA
* * *
119662946 CTGAATAATGTTACGTATATTGCATTGAACTGTAAAATT
1 CTGAATAATGTTACGAATATCGAATTGAACTGTAAAATT
119662985 TCTAATGAAG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.39
Consensus pattern (40 bp):
CTGAATAATGTTACGAATATCGAATTGAACTGTAAAATTA
Found at i:119663212 original size:12 final size:12
Alignment explanation
Indices: 119663195--119663219 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119663185 GCCGACTACT
119663195 GTTACTGTTACC
1 GTTACTGTTACC
119663207 GTTACTGTTACC
1 GTTACTGTTACC
119663219 G
1 G
119663220 ATTCGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:119663247 original size:45 final size:45
Alignment explanation
Indices: 119663197--119663302 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
119663187 CGACTACTGT
* *
119663197 TACTGTTACCGTTACTGTTACCGATTC-GACACTTTGTGTG-TCGAA
1 TACTGTTACTGTTACTGTTACAGATTCAG-CACTTTGTGTGCT-GAA
*
119663242 TACTGTTACTGTTACTGTTACAGATTCAGCATTTTGTGTGCTGAA
1 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTGTGCTGAA
*
119663287 TATTGTTA-TGTTACTG
1 TACTGTTACTGTTACTG
119663303 CTACTGCTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
44 8 0.15
45 45 0.82
46 2 0.04
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTGTGCTGAA
Found at i:119664075 original size:15 final size:14
Alignment explanation
Indices: 119664055--119664088 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
119664045 GAAATTTATA
119664055 AAAAAAATAATAAAT
1 AAAAAAATAA-AAAT
119664070 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
119664084 AAAAA
1 AAAAA
119664089 TTTGGAGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:119664536 original size:53 final size:53
Alignment explanation
Indices: 119664353--119664607 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
119664343 ATTAAGGTTT
* * *
119664353 AAGGATACCATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGCTTTC-TAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAAG--TTCATAAGGC
* * * *
119664408 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
119664463 AAAGG-TCCCATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
119664516 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
119664565 AAGGATACCACGTAAGACTATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
119664608 GTACCCGCGT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 42 0.25
54 9 0.05
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:119664559 original size:108 final size:109
Alignment explanation
Indices: 119664360--119664560 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 109
119664350 TTTAAGGATA
* * * *
119664360 CCATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGCTTTCTAAGGTAAGGAAATCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGC-TTCTAAGGCAAGGAAACCATGTAAGA
*
119664425 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
65 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
119664470 CCATATAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGCAAGGATACCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGCTTC-TAAGGCAAGGAAACCATGTAAGA
*
119664533 CCATGTCAAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
119664561 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 8 0.10
110 25 0.30
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (109 bp):
CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGCTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:119664815 original size:16 final size:16
Alignment explanation
Indices: 119664794--119664824 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
119664784 ATAAATTTGA
119664794 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
119664810 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
119664825 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:119674815 original size:12 final size:12
Alignment explanation
Indices: 119674789--119674826 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
119674779 TCAATTCGTC
*
119674789 TTTAT-TAAATT
1 TTTATATAATTT
*
119674800 TTTATATGATTT
1 TTTATATAATTT
119674812 TTTATATAATTT
1 TTTATATAATTT
119674824 TTT
1 TTT
119674827 TAAAAATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 5 0.22
12 18 0.78
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (12 bp):
TTTATATAATTT
Found at i:119677915 original size:2 final size:2
Alignment explanation
Indices: 119677908--119677996 Score: 178
Period size: 2 Copynumber: 44.5 Consensus size: 2
119677898 AACAGATATG
119677908 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
119677950 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
119677992 CA CA C
1 CA CA C
119677997 CTAGTTACAC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 87 1.00
ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:119678861 original size:12 final size:12
Alignment explanation
Indices: 119678846--119678870 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119678836 AAAATAAAAT
119678846 AAATATTTAACA
1 AAATATTTAACA
119678858 AAATATTTAACA
1 AAATATTTAACA
119678870 A
1 A
119678871 CATAGAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATATTTAACA
Found at i:119679227 original size:18 final size:20
Alignment explanation
Indices: 119679200--119679240 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
119679190 AATTATTTTA
*
119679200 TTAATTTTTTTA-TAA-TTC
1 TTAATATTTTTATTAATTTC
119679218 TTAATATTTTTATTAATTTC
1 TTAATATTTTTATTAATTTC
119679238 TTA
1 TTA
119679241 TAATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 3 0.15
20 6 0.30
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (20 bp):
TTAATATTTTTATTAATTTC
Found at i:119684000 original size:2 final size:2
Alignment explanation
Indices: 119683993--119684020 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
119683983 AATATTTTAC
119683993 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
119684021 TTGACTACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119696013 original size:15 final size:14
Alignment explanation
Indices: 119695988--119696025 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
119695978 GTTTGTCAAT
119695988 AAAATATTTTTTGG
1 AAAATATTTTTTGG
*
119696002 AAAATAATTTTTGG
1 AAAATATTTTTTGG
119696016 AAAATTATTT
1 AAAA-TATTT
119696026 GCTTCATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (14 bp):
AAAATATTTTTTGG
Found at i:119700982 original size:17 final size:16
Alignment explanation
Indices: 119700962--119701004 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
119700952 TATTTAAGAA
119700962 TTTATTATATTTTATT
1 TTTATTATATTTTATT
* *
119700978 GTTTATTTTAGTTTATT
1 -TTTATTATATTTTATT
*
119700995 ATTATTATAT
1 TTTATTATAT
119701005 ATATATTAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.70
Consensus pattern (16 bp):
TTTATTATATTTTATT
Done.