Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 394 of 425
Found at i:120849506 original size:22 final size:24
Alignment explanation
Indices: 120849481--120849527 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
120849471 TAAGCTGATT
*
120849481 AATAATACT-AATTAATAA-TGGA
1 AATAATACTAAAATAATAAGTGGA
*
120849503 AATAATAGTAAAATAATAAGTGGA
1 AATAATACTAAAATAATAAGTGGA
120849527 A
1 A
120849528 CATTAGTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 8 0.38
24 5 0.24
ACGTcount: A:0.57, C:0.02, G:0.13, T:0.28
Consensus pattern (24 bp):
AATAATACTAAAATAATAAGTGGA
Found at i:120849867 original size:16 final size:17
Alignment explanation
Indices: 120849842--120849879 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
120849832 ATAAAAGCAG
120849842 TAAATAAAATGCAGA-AT
1 TAAATAAAATG-AGAGAT
120849859 TAAAT-AAATGAGAGAT
1 TAAATAAAATGAGAGAT
120849875 TAAAT
1 TAAAT
120849880 TGAAATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.15
16 12 0.60
17 5 0.25
ACGTcount: A:0.58, C:0.03, G:0.13, T:0.26
Consensus pattern (17 bp):
TAAATAAAATGAGAGAT
Found at i:120859770 original size:3 final size:3
Alignment explanation
Indices: 120859762--120859799 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
120859752 ATTTTACTTC
120859762 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
120859800 GTTTAAGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:120860442 original size:17 final size:15
Alignment explanation
Indices: 120860395--120860435 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
120860385 AAATATTCAA
120860395 AAAAATTATAATTAT
1 AAAAATTATAATTAT
*
120860410 AAAATATTAAAAATTAT
1 AAAA-ATT-ATAATTAT
120860427 AAAAATTAT
1 AAAAATTAT
120860436 GAGATTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 5 0.23
16 6 0.27
17 11 0.50
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAAATTATAATTAT
Found at i:120860501 original size:29 final size:28
Alignment explanation
Indices: 120860469--120860524 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
120860459 TTTTTATTAA
*
120860469 ATAAAGTAAAA-TTATAAAAACTATAAAAT
1 ATAAAGTAAAACTAAT-AAAA-TATAAAAT
*
120860498 ATAAATTAAAACTAATAAAATATAAAA
1 ATAAAGTAAAACTAATAAAATATAAAA
120860525 CCATTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.29
29 14 0.58
30 3 0.12
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.27
Consensus pattern (28 bp):
ATAAAGTAAAACTAATAAAATATAAAAT
Found at i:120860510 original size:20 final size:21
Alignment explanation
Indices: 120860485--120860523 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
120860475 TAAAATTATA
120860485 AAAACT-ATAAAATATAAATT
1 AAAACTAATAAAATATAAATT
120860505 AAAACTAATAAAATATAAA
1 AAAACTAATAAAATATAAA
120860524 ACCATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAACTAATAAAATATAAATT
Found at i:120860578 original size:29 final size:28
Alignment explanation
Indices: 120860540--120860596 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
120860530 TTTTTATTAA
*
120860540 ATAAAGTAAAA-TTATAAAAACTATAAAAT
1 ATAAAGTAAAACTAAT-AAAA-TATAAAAT
*
120860569 ATAAATTAAAACTAATAAAATATAAAAT
1 ATAAAGTAAAACTAATAAAATATAAAAT
120860597 TTATTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 8 0.32
29 14 0.56
30 3 0.12
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (28 bp):
ATAAAGTAAAACTAATAAAATATAAAAT
Found at i:120860581 original size:20 final size:21
Alignment explanation
Indices: 120860556--120860594 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
120860546 TAAAATTATA
120860556 AAAACT-ATAAAATATAAATT
1 AAAACTAATAAAATATAAATT
120860576 AAAACTAATAAAATATAAA
1 AAAACTAATAAAATATAAA
120860595 ATTTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAACTAATAAAATATAAATT
Found at i:120860605 original size:71 final size:71
Alignment explanation
Indices: 120860452--120860595 Score: 288
Period size: 71 Copynumber: 2.0 Consensus size: 71
120860442 AAAAAACCTT
120860452 AACCATTTTTTTATTAAATAAAGTAAAATTATAAAAACTATAAAATATAAATTAAAACTAATAAA
1 AACCATTTTTTTATTAAATAAAGTAAAATTATAAAAACTATAAAATATAAATTAAAACTAATAAA
120860517 ATATAA
66 ATATAA
120860523 AACCATTTTTTTATTAAATAAAGTAAAATTATAAAAACTATAAAATATAAATTAAAACTAATAAA
1 AACCATTTTTTTATTAAATAAAGTAAAATTATAAAAACTATAAAATATAAATTAAAACTAATAAA
120860588 ATATAA
66 ATATAA
120860594 AA
1 AA
120860596 TTTATTTTTT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (71 bp):
AACCATTTTTTTATTAAATAAAGTAAAATTATAAAAACTATAAAATATAAATTAAAACTAATAAA
ATATAA
Found at i:120877868 original size:17 final size:17
Alignment explanation
Indices: 120877846--120877896 Score: 84
Period size: 17 Copynumber: 3.0 Consensus size: 17
120877836 ATTTTCATTA
*
120877846 AATATAAAAATTAAATT
1 AATATAAAAAATAAATT
120877863 AATATAAAAAATAAATT
1 AATATAAAAAATAAATT
*
120877880 AAAATAAAAAATAAATT
1 AATATAAAAAATAAATT
120877897 TTATTTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATATAAAAAATAAATT
Found at i:120883485 original size:45 final size:45
Alignment explanation
Indices: 120883421--120883511 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
120883411 TTTGCCGCTT
120883421 ATTTAGAAATACAATCTAACTTGACTCCAAATATAGTTAAGACTA
1 ATTTAGAAATACAATCTAACTTGACTCCAAATATAGTTAAGACTA
* * *
120883466 ATTTAGAAATCCAATCTAACTTGACTCTATATATAGTTAAGACTA
1 ATTTAGAAATACAATCTAACTTGACTCCAAATATAGTTAAGACTA
120883511 A
1 A
120883512 CGTGTTAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (45 bp):
ATTTAGAAATACAATCTAACTTGACTCCAAATATAGTTAAGACTA
Found at i:120897842 original size:18 final size:18
Alignment explanation
Indices: 120897803--120897876 Score: 76
Period size: 18 Copynumber: 4.1 Consensus size: 18
120897793 AAACAATTAT
* * *
120897803 TTATTTAGTAATAGTCAG
1 TTATTCAGTAATAATCAA
* *
120897821 TTATTCGGTAACAATCAA
1 TTATTCAGTAATAATCAA
*
120897839 TTATTCAATAATAATCAA
1 TTATTCAGTAATAATCAA
* *
120897857 TAATTCAGTATTAATCAA
1 TTATTCAGTAATAATCAA
120897875 TT
1 TT
120897877 GATCGGTTAT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (18 bp):
TTATTCAGTAATAATCAA
Found at i:120897909 original size:18 final size:18
Alignment explanation
Indices: 120897883--120897950 Score: 57
Period size: 18 Copynumber: 3.7 Consensus size: 18
120897873 AATTGATCGG
* *
120897883 TTATCCAGTAACAGTTAA
1 TTATTCAGTAACAATTAA
* *
120897901 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATTA-A
* *
120897920 -TATACAATAACAATTAAA
1 TTATTCAGTAACAATT-AA
120897938 TTATTCAGTAACA
1 TTATTCAGTAACA
120897951 GTCGATCTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
18 25 0.68
19 12 0.32
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.32
Consensus pattern (18 bp):
TTATTCAGTAACAATTAA
Found at i:120898144 original size:53 final size:51
Alignment explanation
Indices: 120898086--120898199 Score: 155
Period size: 47 Copynumber: 2.3 Consensus size: 51
120898076 CAGTAACAGT
*
120898086 AACAGTAACAGTAGTAGTACGGTACACAGAGTACCTCATCGGAACAAATCCAA
1 AACAGTAACAGTA--AGCACGGTACACAGAGTACCTCATCGGAACAAATCCAA
* *
120898139 AACAGTAAC----AGCACGGTACACAGAGTACCTCATCGGAGCAAATCCGA
1 AACAGTAACAGTAAGCACGGTACACAGAGTACCTCATCGGAACAAATCCAA
120898186 AACAGTAACAGTAA
1 AACAGTAACAGTAA
120898200 CGGTAACAGT
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
47 44 0.81
51 1 0.02
53 9 0.17
ACGTcount: A:0.42, C:0.24, G:0.19, T:0.15
Consensus pattern (51 bp):
AACAGTAACAGTAAGCACGGTACACAGAGTACCTCATCGGAACAAATCCAA
Found at i:120898161 original size:47 final size:47
Alignment explanation
Indices: 120898104--120898196 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
120898094 CAGTAGTAGT
120898104 ACGGTACACAGAGTACCTCATCGGAACAAATCCAAAACAGTAACAGC
1 ACGGTACACAGAGTACCTCATCGGAACAAATCCAAAACAGTAACAGC
* *
120898151 ACGGTACACAGAGTACCTCATCGGAGCAAATCCGAAACAGTAACAG
1 ACGGTACACAGAGTACCTCATCGGAACAAATCCAAAACAGTAACAG
120898197 TAACGGTAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.41, C:0.27, G:0.19, T:0.13
Consensus pattern (47 bp):
ACGGTACACAGAGTACCTCATCGGAACAAATCCAAAACAGTAACAGC
Found at i:120898400 original size:16 final size:16
Alignment explanation
Indices: 120898371--120898404 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
120898361 TAATTCACTT
120898371 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
120898387 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
120898403 TT
1 TT
120898405 AACTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Found at i:120900129 original size:30 final size:30
Alignment explanation
Indices: 120900095--120900153 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
120900085 TATTTGCTTG
*
120900095 TTAATTTTGTTATTATTTTAAAGGTATTTT
1 TTAATTTTGTTATTATTTTAAAGGCATTTT
* *
120900125 TTAATTTTTTTATTATTTTAGAGGCATTT
1 TTAATTTTGTTATTATTTTAAAGGCATTT
120900154 ACTTGTTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.63
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTT
Found at i:120900785 original size:3 final size:3
Alignment explanation
Indices: 120900777--120900818 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
120900767 TTTACACATT
120900777 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
120900819 CAATTGCACC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:120900983 original size:3 final size:3
Alignment explanation
Indices: 120900975--120901025 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
120900965 ATTGTTTTGA
120900975 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
120901023 TAT
1 TAT
120901026 CTCGTCTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:120901057 original size:8 final size:9
Alignment explanation
Indices: 120900977--120901059 Score: 60
Period size: 9 Copynumber: 9.1 Consensus size: 9
120900967 TGTTTTGATA
*
120900977 TTATTATTA
1 TTATTATTT
*
120900986 TTATTATTA
1 TTATTATTT
*
120900995 TTATTATTA
1 TTATTATTT
*
120901004 TTATTATTA
1 TTATTATTT
*
120901013 TTATTATTA
1 TTATTATTT
* *
120901022 TTATCTCGTCT
1 TTAT-T-ATTT
**
120901033 TTGCTATTT
1 TTATTATTT
120901042 TTATTATTT
1 TTATTATTT
120901051 TTA-TATTT
1 TTATTATTT
120901059 T
1 T
120901060 AAAAAATTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
8 6 0.10
9 52 0.83
10 2 0.03
11 3 0.05
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.67
Consensus pattern (9 bp):
TTATTATTT
Found at i:120909180 original size:22 final size:23
Alignment explanation
Indices: 120909155--120909200 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
120909145 CAACCAAATC
120909155 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
120909177 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
120909200 A
1 A
120909201 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:120909206 original size:23 final size:23
Alignment explanation
Indices: 120909162--120909206 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
120909152 ATCAATTCAA
*
120909162 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
120909185 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
120909207 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:120910999 original size:16 final size:16
Alignment explanation
Indices: 120910978--120911012 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
120910968 TCCCCTAAAC
*
120910978 TTTTAATAAATGATAA
1 TTTTAAAAAATGATAA
*
120910994 TTTTAAAAAATGGTAA
1 TTTTAAAAAATGATAA
120911010 TTT
1 TTT
120911013 CGTCCCTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (16 bp):
TTTTAAAAAATGATAA
Found at i:120912047 original size:15 final size:15
Alignment explanation
Indices: 120912001--120912047 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
120911991 AGGTTTAGGG
120912001 TTAGGG-TTTAGTGAT
1 TTAGGGTTTTAGTG-T
**
120912016 TTAGGGTTTTAAAGT
1 TTAGGGTTTTAGTGT
120912031 TTAGGGTTTTAGTGT
1 TTAGGGTTTTAGTGT
120912046 TT
1 TT
120912048 TTAAGGGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 22 0.81
16 5 0.19
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (15 bp):
TTAGGGTTTTAGTGT
Found at i:120912351 original size:126 final size:126
Alignment explanation
Indices: 120912169--120912477 Score: 483
Period size: 126 Copynumber: 2.5 Consensus size: 126
120912159 ATTAACTATT
*
120912169 AATTACGGAAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
* * *
120912234 GAGAAGATGTTTCTAAATAAATAGTGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGTAA
66 GAGAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTAAAGAAGGATGCACTGTCAGCAA
* * *
120912295 AATTACGGAAAAAAGCTCCCACGTGGACACTTTTTTGCTACAGTAGTATCTAAAAAAATAATTTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
** * *
120912360 GAGAAGATGTTTCTGGACAAATAGTGTTAAAAACGCTTAAAGAAGGATGCGCTGTCAGCAA
66 GAGAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTAAAGAAGGATGCACTGTCAGCAA
* * * *
120912421 AATTACAGAAAAAAGCTCCTACATGGACGCTGTTTTGCTACAGTAGTATCTGAAAAA
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAA
120912478 GCCTTAGACT
Statistics
Matches: 166, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 166 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (126 bp):
AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTT
GAGAAGATGTTTCTAAACAAATAGTGTCAAAAACGCTTAAAGAAGGATGCACTGTCAGCAA
Found at i:120915717 original size:128 final size:128
Alignment explanation
Indices: 120915500--120915874 Score: 644
Period size: 129 Copynumber: 2.9 Consensus size: 128
120915490 ACATTTATTT
* * *
120915500 TAATAAAAATTATTGGCTAATGTAAAAGAACATTTATTCTATTAAAATTAAAAAAAGTAAAGTAC
1 TAATAAAAA-TATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATT-AAAAAAGTAAAGTAC
120915565 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAA
64 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAA
120915630 TAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAGTAAAGTACAA
1 TAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAGTAAAGTACAA
*
120915695 TTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAATTAAATATAAAAA
66 TTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAA
*
120915758 TAATAAAAAATATTGCCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAGTAAAGTACA
1 TAAT-AAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAGTAAAGTACA
* *
120915823 ATTAAAATATTAAAAACAACTTTTATTTTGTT-ATATGAAACTATATAAAAAA
65 ATTAAAATATTAAAAACAACTTTTATTTTATTAAT-TAAAACTATATAAAAAA
120915875 GTTTGTACAA
Statistics
Matches: 235, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
128 85 0.36
129 141 0.60
130 9 0.04
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (128 bp):
TAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAGTAAAGTACAA
TTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAATAAATATAAAAA
Found at i:120916003 original size:21 final size:22
Alignment explanation
Indices: 120915978--120916029 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
120915968 TGGTTCAGCT
*
120915978 TCCGGCGAGGG-TTGTGGTTGC
1 TCCGGCGAGGGATTGTGGTTCC
*
120915999 TCCGGTG-GGGATTGTGGTTCC
1 TCCGGCGAGGGATTGTGGTTCC
120916020 TCCGGC-AGGG
1 TCCGGCGAGGG
120916030 GATCTGGTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.06, C:0.21, G:0.46, T:0.27
Consensus pattern (22 bp):
TCCGGCGAGGGATTGTGGTTCC
Found at i:120916934 original size:7 final size:7
Alignment explanation
Indices: 120916922--120916957 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
120916912 TTATATAGGT
120916922 AATACTA
1 AATACTA
120916929 AATACTA
1 AATACTA
120916936 AATACTA
1 AATACTA
*
120916943 AATACGA
1 AATACTA
120916950 AATGACTA
1 AAT-ACTA
120916958 TTTTATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 23 0.88
8 3 0.12
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.25
Consensus pattern (7 bp):
AATACTA
Found at i:120918141 original size:21 final size:22
Alignment explanation
Indices: 120918096--120918158 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 22
120918086 ATAGAGCTTT
**
120918096 TTTG-CAAAAATTAGAGAGAGC
1 TTTGACAAAAATTAGAGAGAAA
120918117 TTTGACAAAAATT-GAGAGAAA
1 TTTGACAAAAATTAGAGAGAAA
* * *
120918138 TTTGAGAGAATTTAGAGAGAA
1 TTTGACAAAAATTAGAGAGAA
120918159 TTGTGAGAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 20 0.57
22 15 0.43
ACGTcount: A:0.46, C:0.05, G:0.24, T:0.25
Consensus pattern (22 bp):
TTTGACAAAAATTAGAGAGAAA
Found at i:120918154 original size:20 final size:22
Alignment explanation
Indices: 120918126--120918167 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
120918116 CTTTGACAAA
120918126 AATTGAGAGA-AATT-TGAGAG
1 AATTGAGAGAGAATTGTGAGAG
*
120918146 AATTTAGAGAGAATTGTGAGAG
1 AATTGAGAGAGAATTGTGAGAG
120918168 GACTATTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 4 0.21
22 6 0.32
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.26
Consensus pattern (22 bp):
AATTGAGAGAGAATTGTGAGAG
Found at i:120920480 original size:26 final size:26
Alignment explanation
Indices: 120920444--120920553 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
120920434 TGATACAAAT
120920444 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
120920470 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
120920496 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
120920522 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
120920548 TGATAA
1 TGATAA
120920554 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:120922211 original size:27 final size:27
Alignment explanation
Indices: 120922170--120922282 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
120922160 GAGGAAGCGT
*
120922170 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
120922197 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
120922224 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
120922252 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
120922278 TCTGG
1 TCTGG
120922283 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:120922275 original size:54 final size:54
Alignment explanation
Indices: 120922168--120922282 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
120922158 TGGAGGAAGC
*
120922168 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
120922222 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
120922276 GTTCTGG
1 GTTCTGG
120922283 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:120925458 original size:3 final size:3
Alignment explanation
Indices: 120925442--120925506 Score: 50
Period size: 3 Copynumber: 23.0 Consensus size: 3
120925432 ATCTTTAACT
* ** *
120925442 TAA T-A TAA -AA TAA TAA TAA TAA TAA T-T TAA T-A TAA -AA CCA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
120925485 TAA TAA TTAA TAA TAA TAA TAA
1 TAA TAA -TAA TAA TAA TAA TAA
120925507 AATCTTAGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
2 9 0.18
3 37 0.76
4 3 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:120929193 original size:22 final size:23
Alignment explanation
Indices: 120929143--120929194 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
120929133 TTATTCATAA
*
120929143 AAAAACATCTAATATTTATTAAT
1 AAAAACATCCAATATTTATTAAT
** *
120929166 GGAAACATCCAA-ATTTTTTAAT
1 AAAAACATCCAATATTTATTAAT
120929188 AAAAACA
1 AAAAACA
120929195 AAAACAAAGG
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAAACATCCAATATTTATTAAT
Found at i:120930241 original size:17 final size:18
Alignment explanation
Indices: 120930213--120930253 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
120930203 CACTCTATTG
*
120930213 CTTCTCTTCTTCTGTTAT
1 CTTCTCTTCTTCTGTGAT
120930231 CTTCT-TTCTTCTGTGAT
1 CTTCTCTTCTTCTGTGAT
120930248 C-TCTCT
1 CTTCTCT
120930254 ATTTCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 13 0.62
18 5 0.24
ACGTcount: A:0.05, C:0.29, G:0.07, T:0.59
Consensus pattern (18 bp):
CTTCTCTTCTTCTGTGAT
Found at i:120939727 original size:16 final size:16
Alignment explanation
Indices: 120939685--120939728 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
120939675 ATTTCCATCT
120939685 TTCT-ATTTTTCTACCC
1 TTCTAATTTTT-TACCC
* *
120939701 TTTTAATTTTTTATCC
1 TTCTAATTTTTTACCC
120939717 TTCTAATTTTTT
1 TTCTAATTTTTT
120939729 TCTACCCTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (16 bp):
TTCTAATTTTTTACCC
Found at i:120941356 original size:33 final size:35
Alignment explanation
Indices: 120941319--120941415 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
120941309 ATAGTTATAT
120941319 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTGCTTAA
* *
120941352 TTAAAT-TTTATAA-ATAATTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAATT--TATATATTGCTTAA
*
120941387 --AAATATTTAAAATTTATATTTTATATATT
1 TTAAATATTTAAAA--TATAATTTATATATT
120941416 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 7 0.14
35 10 0.20
37 5 0.10
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTGCTTAA
Found at i:120941614 original size:13 final size:13
Alignment explanation
Indices: 120941598--120941630 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
120941588 TTTAAACTAA
120941598 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
120941611 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
120941624 ACTTTTC
1 ACTTTTC
120941631 CACATAACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:120944146 original size:19 final size:20
Alignment explanation
Indices: 120944122--120944166 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
120944112 TAAAAGTTGA
120944122 AATTTTT-ATAAA-TATTTTG
1 AATTTTTGA-AAATTATTTTG
120944141 AATTTTTGAAAATTATTTTG
1 AATTTTTGAAAATTATTTTG
120944161 -ATTTTT
1 AATTTTT
120944167 TTTTGTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (20 bp):
AATTTTTGAAAATTATTTTG
Found at i:120944147 original size:20 final size:20
Alignment explanation
Indices: 120944118--120944167 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
120944108 AATATAAAAG
*
120944118 TTGAAATTTTTATAAA-TATT
1 TTGAATTTTTTA-AAATTATT
*
120944138 TTGAATTTTTGAAAATTATT
1 TTGAATTTTTTAAAATTATT
120944158 TTG-ATTTTTT
1 TTGAATTTTTT
120944168 TTTGTAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (20 bp):
TTGAATTTTTTAAAATTATT
Found at i:120945132 original size:120 final size:119
Alignment explanation
Indices: 120944967--120945206 Score: 354
Period size: 120 Copynumber: 2.0 Consensus size: 119
120944957 AACTGTGTTA
* * * * *
120944967 CAAGTTATTAAAGATCTATTCTAGCTATTTTGGATGGTTCAATTTACACATGTATGGTGTCTTTA
1 CAAGCTATTAAAGATCTATTCTAACTATTTTGGATGGTTCAATTTACACATGTATAGCGTCCTT-
*
120945032 AAAGCCTCTGGATAGATACATCTACATACAACCGTCAGATAAAATTCTTCAACTG
65 AAAGCCTCTGAATAGATACATCTACATACAACCGTCAGATAAAATTCTTCAACTG
*
120945087 CAAGCTATTAAAGATCTATTCTAACTATTTTGGATGGTTCGATTTACACATGTATAGCGTCCTTA
1 CAAGCTATTAAAGATCTATTCTAACTATTTTGGATGGTTCAATTTACACATGTATAGCGTCCTTA
* * * * * *
120945152 AGGTCTCTGAATAGATATATCTACATGCAACCGTTAGATGAAATTCTTCAACTG
66 AAGCCTCTGAATAGATACATCTACATACAACCGTCAGATAAAATTCTTCAACTG
120945206 C
1 C
120945207 TACACTATGC
Statistics
Matches: 107, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
119 49 0.46
120 58 0.54
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (119 bp):
CAAGCTATTAAAGATCTATTCTAACTATTTTGGATGGTTCAATTTACACATGTATAGCGTCCTTA
AAGCCTCTGAATAGATACATCTACATACAACCGTCAGATAAAATTCTTCAACTG
Found at i:120948518 original size:22 final size:22
Alignment explanation
Indices: 120948490--120948532 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
120948480 ACATGTATAT
120948490 ATATGCATCAATTACGTTAGAC
1 ATATGCATCAATTACGTTAGAC
120948512 ATATGCATCAATTACGTTAGA
1 ATATGCATCAATTACGTTAGA
120948533 AACTTTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (22 bp):
ATATGCATCAATTACGTTAGAC
Found at i:120950592 original size:2 final size:2
Alignment explanation
Indices: 120950585--120950612 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
120950575 AATTAATTTA
120950585 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120950613 GAAGTAGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:120952892 original size:49 final size:49
Alignment explanation
Indices: 120952833--120952932 Score: 166
Period size: 49 Copynumber: 2.0 Consensus size: 49
120952823 TTTTCTTCCA
*
120952833 TTGCTGAGATTATCTTATTCTTT-TTTTTCTTTGCAAACCCGAATCAAAG
1 TTGCTAAGATTATCTTATT-TTTCTTTTTCTTTGCAAACCCGAATCAAAG
*
120952882 TTGCTAAGATTATCTTCTTTTTCTTTTTCTTTGCAAACCCGAATCAAAG
1 TTGCTAAGATTATCTTATTTTTCTTTTTCTTTGCAAACCCGAATCAAAG
120952931 TT
1 TT
120952933 CATCCCCGAT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
48 3 0.06
49 45 0.94
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.46
Consensus pattern (49 bp):
TTGCTAAGATTATCTTATTTTTCTTTTTCTTTGCAAACCCGAATCAAAG
Found at i:120959522 original size:21 final size:21
Alignment explanation
Indices: 120959490--120959532 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
120959480 AATTTCATTA
120959490 CTGTAATCTGTTATCC-TTTG
1 CTGTAATCTGTTATCCATTTG
* *
120959510 CTGTCAATTTGTTGTCCATTTG
1 CTGT-AATCTGTTATCCATTTG
120959532 C
1 C
120959533 GCTACTGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.14, C:0.21, G:0.16, T:0.49
Consensus pattern (21 bp):
CTGTAATCTGTTATCCATTTG
Found at i:120962329 original size:14 final size:15
Alignment explanation
Indices: 120962312--120962349 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
120962302 GGGGGTTTCA
*
120962312 TTTTATTTTCTTCTT
1 TTTTATTTTCTTATT
*
120962327 TTTTATTTTTTTA-T
1 TTTTATTTTCTTATT
120962341 TTTTATTTT
1 TTTTATTTT
120962350 TCCTGATTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTATTTTCTTATT
Found at i:120962350 original size:14 final size:14
Alignment explanation
Indices: 120962312--120962350 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
120962302 GGGGGTTTCA
120962312 TTTTATTTTCTTCTT
1 TTTTATTTT-TTCTT
120962327 TTTTATTTTTT-TAT
1 TTTTATTTTTTCT-T
120962341 TTTTATTTTT
1 TTTTATTTTT
120962351 CCTGATTCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.04
14 13 0.57
15 9 0.39
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTATTTTTTCTT
Found at i:120964803 original size:26 final size:26
Alignment explanation
Indices: 120964767--120964876 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
120964757 TGATACAAAT
120964767 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
120964793 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
120964819 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
120964845 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
120964871 TGATAA
1 TGATAA
120964877 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:120969327 original size:18 final size:18
Alignment explanation
Indices: 120969304--120969340 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
120969294 ATTGGTTGAG
120969304 TCTGCATATAATAACAGT
1 TCTGCATATAATAACAGT
120969322 TCTGCATATAATAACAGT
1 TCTGCATATAATAACAGT
120969340 T
1 T
120969341 ATCAATCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
TCTGCATATAATAACAGT
Found at i:120971525 original size:117 final size:116
Alignment explanation
Indices: 120971314--120971542 Score: 323
Period size: 117 Copynumber: 2.0 Consensus size: 116
120971304 GTTTTGTGGC
* * *
120971314 TAAAGATGAATTGACGGATAAGACCATAACAGGGTTATGGCACTATAAATGTAAGACCATGTTTG
1 TAAAGATGAATTGACGAATAAGACCATAACAGGGTTATGGCACTATAAACGTAAGACCATGGTTG
*
120971379 GACCATAGCGGTATTTATATGTAAGACCATAGCTGGGCTATGGCATTAATG
66 GACCATAGCAGTATTTATATGTAAGACCATAGCTGGGCTATGGCATTAATG
* * ** *
120971430 TAAAGGATGAATTGACGAATAATACCATAACTGGGTTATGGCTTTATGAACGTAAGACCATGGTT
1 TAAA-GATGAATTGACGAATAAGACCATAACAGGGTTATGGCACTATAAACGTAAGACCATGGTT
* * * * *
120971495 GGACGATGGCAGTGTTTATATGTAATACCATAGCTGGGTTATGGCATT
65 GGACCATAGCAGTATTTATATGTAAGACCATAGCTGGGCTATGGCATT
120971543 CTGGTGATAA
Statistics
Matches: 98, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
116 4 0.04
117 94 0.96
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (116 bp):
TAAAGATGAATTGACGAATAAGACCATAACAGGGTTATGGCACTATAAACGTAAGACCATGGTTG
GACCATAGCAGTATTTATATGTAAGACCATAGCTGGGCTATGGCATTAATG
Found at i:120979525 original size:16 final size:16
Alignment explanation
Indices: 120979501--120979534 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
120979491 TGAGTTTTTT
120979501 TTTAGAATAATTACCA
1 TTTAGAATAATTACCA
* *
120979517 TTTATAATATTTACCA
1 TTTAGAATAATTACCA
120979533 TT
1 TT
120979535 AAAAAAAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (16 bp):
TTTAGAATAATTACCA
Found at i:120981339 original size:2 final size:2
Alignment explanation
Indices: 120981332--120981360 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
120981322 TCCCATTTCC
120981332 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
120981361 GGACCAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:120982737 original size:4 final size:4
Alignment explanation
Indices: 120982730--120982776 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
120982720 ATCCTTTCTT
120982730 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
120982777 ATATATATAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.51
Consensus pattern (4 bp):
TATC
Found at i:120993443 original size:132 final size:132
Alignment explanation
Indices: 120993206--120993706 Score: 779
Period size: 132 Copynumber: 3.8 Consensus size: 132
120993196 GATTACGAAT
120993206 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACACCAGATCTTATCTTCACTG
*
120993271 ACAGGAGTGGAGCAGATCGAATTTTGATGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTC
66 ACAGGAGTGAAGCAGATCGAATTTTGATGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTC
120993336 CA
131 CA
* * * *
120993338 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTATAGACTAGATCTTACCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACACCAGATCTTATCTTCACTG
* * * * * * *
120993403 ATAGGAGTGAAGCAGATCAAATTTTGA-CAAGTCTTATCTCCATGTATCGGCAACGGAGCAGATT
66 ACAGGAGTGAAGCAGATCGAATTTTGATGAA-TCTTATCTCCACGTACCGGCGATGGAGCAGATT
*
120993467 TCA
130 CCA
** * *
120993470 GCCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACACCAGACCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACACCAGATCTTATCTTCACTG
* * *
120993535 ACAGGAGTGGAGCAGATCGAATTTTGATGAATTTTCTCTCCACGTACCGGCGATGGAGCAGATTC
66 ACAGGAGTGAAGCAGATCGAATTTTGATGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTC
120993600 CA
131 CA
* *
120993602 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACTAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACACCAGATCTTATCTTCACTG
120993667 AGCAGGAGTGAAGCAGATCGAATTTTGATGAATCTTATCT
66 A-CAGGAGTGAAGCAGATCGAATTTTGATGAATCTTATCT
120993707 TTGCTGAGCA
Statistics
Matches: 325, Mismatches: 41, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
131 2 0.01
132 286 0.88
133 37 0.11
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (132 bp):
ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACACCAGATCTTATCTTCACTG
ACAGGAGTGAAGCAGATCGAATTTTGATGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTC
CA
Found at i:120993672 original size:43 final size:43
Alignment explanation
Indices: 120993215--120993682 Score: 151
Period size: 43 Copynumber: 10.7 Consensus size: 43
120993205 TATCATCAGC
* *
120993215 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAACACCAGAT
1 CTTATCTTCACTGA-CAGGAGTGGAGCAGGCTCAAATACTAGAT
* * **
120993258 CTTATCTTCACTGACAGGAGTGGAGCA-GATCGAATTTTGATGAAT
1 CTTATCTTCACTGACAGGAGTGGAGCAGGCTCAAATACT-A-G-AT
* * * ** * *
120993303 CTTATCTCCAC-GTACCGGCGATGGAGCAGATTCCAAT-CATCAG-C
1 CTTATCTTCACTG-ACAGGAG-TGGAGCAGGCTCAAATAC-T-AGAT
* *
120993347 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-ATAGACTAGAT
1 CTTATCTTCACTGA-CAGGAGTGGAGCAGGCTCAAATACTAGAT
* * * * *
120993390 CTTACCTTCACTGATAGGAGTGAAGCA-GATCAAATTTTGACAAG-T
1 CTTATCTTCACTGACAGGAGTGGAGCAGGCTCAAA---T-ACTAGAT
* ** ** *** * *
120993435 CTTATCTCCA-TGTATC-GGCAACGGAGCAGATTTCAGCCACCAG-C
1 CTTATCTTCACTG-A-CAGG-AGTGGAGCAG-GCTCAAATACTAGAT
* * *
120993479 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAACACCAGAC
1 CTTATCTTCACTGA-CAGGAGTGGAGCAGGCTCAAATACTAGAT
* * **
120993522 CTTATCTTCACTGACAGGAGTGGAGCA-GATCGAATTTTGATGAAT
1 CTTATCTTCACTGACAGGAGTGGAGCAGGCTCAAATACT-A-G-AT
* * * * * ** * *
120993567 TTTCTCTCCAC-GTACCGGCGATGGAGCAGATTCCAAT-CATCAG-C
1 CTTATCTTCACTG-ACAGGAG-TGGAGCAGGCTCAAATAC-T-AGAT
120993611 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAATACTAGAT
1 CTTATCTTCACTGA-CAGGAGTGGAGCAGGCTCAAATACTAGAT
*
120993654 CTTATCTTCACTGAGCAGGAGTGAAGCAG
1 CTTATCTTCACTGA-CAGGAGTGGAGCAG
120993683 ATCGAATTTT
Statistics
Matches: 308, Mismatches: 80, Indels: 74
0.67 0.17 0.16
Matches are distributed among these distances:
41 6 0.02
42 54 0.18
43 79 0.26
44 69 0.22
45 57 0.19
46 26 0.08
47 14 0.05
48 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (43 bp):
CTTATCTTCACTGACAGGAGTGGAGCAGGCTCAAATACTAGAT
Found at i:120993728 original size:46 final size:47
Alignment explanation
Indices: 120993652--120993740 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 47
120993642 TAAATACTAG
* *
120993652 ATCTTATCTTCACTGAGCAGGAGTGAAGCAGA-TCGAATTTTGATGA
1 ATCTTATCTTCACTGAGCAAGAGCGAAGCAGATTCGAATTTTGATGA
** *
120993698 ATCTTATCTTTGCTGAGCAAGAGCGGAGCAGATTCGAATTTTG
1 ATCTTATCTTCACTGAGCAAGAGCGAAGCAGATTCGAATTTTG
120993741 GTCTCCCTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
46 27 0.73
47 10 0.27
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (47 bp):
ATCTTATCTTCACTGAGCAAGAGCGAAGCAGATTCGAATTTTGATGA
Found at i:120995284 original size:25 final size:26
Alignment explanation
Indices: 120995240--120995289 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
120995230 TATTTACCTA
120995240 TTTCATTTTATGTTTTC-TTTATTAG
1 TTTCATTTTATGTTTTCTTTTATTAG
*
120995265 TTTCATTTT-TTTTTTCCTTTTATTA
1 TTTCATTTTATGTTTT-CTTTTATTA
120995290 TTCTATCATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 10 0.45
26 7 0.32
ACGTcount: A:0.14, C:0.10, G:0.04, T:0.72
Consensus pattern (26 bp):
TTTCATTTTATGTTTTCTTTTATTAG
Found at i:120995449 original size:4 final size:4
Alignment explanation
Indices: 120995442--120995484 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
120995432 ATCCTTTCTT
120995442 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
120995485 ATATATATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.51
Consensus pattern (4 bp):
TATC
Found at i:120998260 original size:41 final size:41
Alignment explanation
Indices: 120998214--120998295 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
120998204 CTAAAACTGA
120998214 TAGAGATAAATTTGCAATCCTCTCATCATCCTTACTAACTT
1 TAGAGATAAATTTGCAATCCTCTCATCATCCTTACTAACTT
*
120998255 TAGAGATAAATTTGCAATCCTCTCATCATCTTTACTAACTT
1 TAGAGATAAATTTGCAATCCTCTCATCATCCTTACTAACTT
120998296 CCTTTCCTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (41 bp):
TAGAGATAAATTTGCAATCCTCTCATCATCCTTACTAACTT
Found at i:121000377 original size:2 final size:2
Alignment explanation
Indices: 121000370--121000399 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
121000360 TAAGAACTTT
121000370 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121000400 TTTTGCTCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:121001823 original size:29 final size:29
Alignment explanation
Indices: 121001761--121001823 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
121001751 TAACTTTTTT
* *
121001761 TTTCTCCCTTTATTTTCCATTCTTTTCTA
1 TTTCTCCCTTTATTTTCCATCCTTTTCCA
*
121001790 CTTCT-CCTTCTATTTTCC-TCCTTTCTCCA
1 TTTCTCCCTT-TATTTTCCATCCTTT-TCCA
121001819 TTTCT
1 TTTCT
121001824 TTTAATGTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.08, C:0.33, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTCTCCCTTTATTTTCCATCCTTTTCCA
Found at i:121007987 original size:22 final size:22
Alignment explanation
Indices: 121007936--121007996 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
121007926 ATAAGTAAAT
* *
121007936 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
121007957 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
121007979 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
121007997 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:121008096 original size:3 final size:3
Alignment explanation
Indices: 121008088--121008213 Score: 71
Period size: 3 Copynumber: 41.7 Consensus size: 3
121008078 AAAGTAGTGC
* * * *
121008088 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA T-C TAT TAA GTTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* * * * *
121008136 TAA TGAA -AA TAA TGA TAA TGA TGA T-A TAT TAGA TAA TAA TAG TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * *
121008181 -AA TAA TAA GTAA CAA TGA TAAA TTA TAA TAA TA
1 TAA TAA TAA -TAA TAA TAA T-AA TAA TAA TAA TA
121008214 GTGATGAGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
2 7 0.07
3 77 0.81
4 11 0.12
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:121008234 original size:16 final size:16
Alignment explanation
Indices: 121008213--121008244 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
121008203 TTATAATAAT
121008213 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
121008229 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
121008245 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:121008377 original size:16 final size:15
Alignment explanation
Indices: 121008348--121008390 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
121008338 TATACGTATG
*
121008348 AAAAATAATGATAGT
1 AAAAATAATAATAGT
121008363 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
121008379 AATAATAATAAT
1 AAAAATAATAAT
121008391 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:121008493 original size:3 final size:3
Alignment explanation
Indices: 121008485--121008520 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
121008475 ACACTACCAT
121008485 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
121008521 TAGAAATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:121008620 original size:3 final size:3
Alignment explanation
Indices: 121008612--121008640 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
121008602 AAAAATATAC
121008612 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
121008641 TTAAAATGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:121009135 original size:31 final size:30
Alignment explanation
Indices: 121009097--121009175 Score: 117
Period size: 28 Copynumber: 2.7 Consensus size: 30
121009087 TGATTTTTTT
121009097 TCTTGAATCTCAAAAAAAAAGAAAAATCCCC
1 TCTTGAATCTCAAAAAAAAA-AAAAATCCCC
* *
121009128 TCTTGAATCT--AAAAAAAAAAAAATCTCT
1 TCTTGAATCTCAAAAAAAAAAAAAATCCCC
121009156 TCTTGAATCTCAAAAAAAAA
1 TCTTGAATCTCAAAAAAAAA
121009176 TTCTTCTCTC
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
28 18 0.41
29 8 0.18
30 8 0.18
31 10 0.23
ACGTcount: A:0.53, C:0.18, G:0.05, T:0.24
Consensus pattern (30 bp):
TCTTGAATCTCAAAAAAAAAAAAAATCCCC
Found at i:121009400 original size:11 final size:12
Alignment explanation
Indices: 121009367--121009399 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
121009357 AGATTAGGTT
121009367 TTTTTTTTTTGA
1 TTTTTTTTTTGA
121009379 TTTTTTTTTTGA
1 TTTTTTTTTTGA
121009391 TTTTTTTTT
1 TTTTTTTTT
121009400 GGGTTGGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.00, G:0.06, T:0.88
Consensus pattern (12 bp):
TTTTTTTTTTGA
Found at i:121010121 original size:205 final size:205
Alignment explanation
Indices: 121009751--121010744 Score: 1719
Period size: 205 Copynumber: 4.9 Consensus size: 205
121009741 AGATTTATTT
* * * * * * * *
121009751 CTTCGATTTGATC-CTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
** * * * * *
121009815 GCGAAAGCCAAATCAACTATG-ATTCGATTTGTTCCTTGTAAGCATAAGGATGCCAATCCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
121009879 GGATCCGCTTCAGCATAAACATCCGAAGGTGAGATCTGCTATATGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
121009944 AGATGCCAAA
196 AGATGCCAAA
121009954 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
121010019 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
121010084 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
121010149 AGATGCCAAA
196 AGATGCCAAA
121010159 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
121010224 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
121010289 GGATCTGCTTCAGCGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
131 GGATCCGCTTCAGC-ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
121010353 AAGATGCCAAA
195 AAGATGCCAAA
*
121010364 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCATAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
121010429 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
121010494 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
121010559 AGATGCCAAA
196 AGATGCCAAA
121010569 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
121010634 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
121010699 GGATCTGCTTCAG--TGAAATCGTCTGAAGGCGAGATCTGCTATGTGT
131 GGATCCGCTTCAGCAT-AAA-CATCTGAAGGTGAGATCTGCTATGTGT
121010745 GGCCTATTAC
Statistics
Matches: 759, Mismatches: 26, Indels: 10
0.95 0.03 0.01
Matches are distributed among these distances:
203 12 0.02
204 67 0.09
205 679 0.89
206 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (205 bp):
CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAA
Found at i:121018385 original size:73 final size:73
Alignment explanation
Indices: 121018259--121018422 Score: 269
Period size: 73 Copynumber: 2.3 Consensus size: 73
121018249 AAACATAAAC
*
121018259 TGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
121018324 TGA-TTTT
66 TGATTTTT
* *
121018331 TGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TGA-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
121018396 TTGATTTTT
65 TTGATTTTT
*
121018405 TGAAAACATAAATT-AAAA
1 TGAAAACAGAAATTGAAAA
121018423 CGAAAATTGA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
72 6 0.07
73 72 0.85
74 7 0.08
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (73 bp):
TGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTT
Found at i:121018559 original size:156 final size:157
Alignment explanation
Indices: 121018221--121018734 Score: 554
Period size: 156 Copynumber: 3.3 Consensus size: 157
121018211 GACTCATAAA
* * *
121018221 CTCTCGTAATATGAGTTGATTTTCTGAAAAACATAAACTGAAAAC-AGAAATTGAAAATACCTCA
1 CTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAA-TTAAAACGAGAAATTGAAAATACCTCA
* * * *
121018285 GCGTGTC-CT-GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGA
65 GCATG-CGGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTG--AAACAAAAATTGA
*
121018348 AATTACCTCATCGTGTCCTGAGGCTCAACTCAC
125 AATTACCTCAACGTGTCCTGAGGCTCAACTCAC
*
121018381 CTCTCGCAATATGAGTTGATTTTTTG-AAAACATAAATTAAAACGA-AAATTGAGAATACCTCAG
1 CTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTAAAACGAGAAATTGAAAATACCTCAG
* * *
121018444 CATGCGAGTCGAGGCTCCACTCACCTCTCGCAATATGAGTTGATTCTGGAACATAAATTGAAATT
66 CATGCG-GTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TGAAACAAAAATTGAAATT
*
121018509 A-CTCAACGTGTCTTGAGGCTCAACTCAC
129 ACCTCAACGTGTCCTGAGGCTCAACTCAC
* * *
121018537 CTCTCGCAATATGAGTTGATTTTCTTGAGAAGCATGAATTGAAAA-GCAGAAATT-AAAGATACC
1 CTCTCGCAATATGAGTTGATTTT-TTGAAAAACATAAATT-AAAACG-AGAAATTGAAA-ATACC
* * * **
121018600 TCATCGTGC---CAAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTG
62 TCAGCATGCGGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTG--ATTTGAA-ACAAAAATTG
* * *
121018662 AAAATACCTCAGCGTG-CCCGAGGCTCAACTCAC
124 AAATTACCTCAACGTGTCCTGAGGCTCAACTCAC
* *
121018695 CTCT-ACAATATGAGTTGA--TTTTGAAAAACAAAAATTAAAA
1 CTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTAAAA
121018735 GGCTTAACTA
Statistics
Matches: 306, Mismatches: 33, Indels: 37
0.81 0.09 0.10
Matches are distributed among these distances:
153 4 0.01
154 12 0.04
155 2 0.01
156 79 0.26
157 34 0.11
158 74 0.24
159 29 0.09
160 72 0.24
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (157 bp):
CTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTAAAACGAGAAATTGAAAATACCTCAG
CATGCGGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAACAAAAATTGAAATTAC
CTCAACGTGTCCTGAGGCTCAACTCAC
Found at i:121018704 original size:70 final size:69
Alignment explanation
Indices: 121018573--121018734 Score: 211
Period size: 70 Copynumber: 2.3 Consensus size: 69
121018563 GAGAAGCATG
* * * *
121018573 AATTGAAAAGCAGAAATTAAAGATACCTCATCGTGCCAAGGCTCAACTCACCTCTCGCAATATGA
1 AATTGAAAAACAAAAATTAAA-ATACCTCAGCGTGCCAAGGCTCAACTCACCTCTCACAATATGA
121018638 GTTGA
65 GTTGA
*
121018643 AATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCT-ACAATAT
1 AATTGAAAA-ACAAAAATT-AAAATACCTCAGCGTG-CCAAGGCTCAACTCACCTCTCACAATAT
121018706 GAGTTGA
63 GAGTTGA
**
121018713 TTTTGAAAAACAAAAATTAAAA
1 AATTGAAAAACAAAAATTAAAA
121018735 GGCTTAACTA
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
69 8 0.10
70 47 0.58
71 26 0.32
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (69 bp):
AATTGAAAAACAAAAATTAAAATACCTCAGCGTGCCAAGGCTCAACTCACCTCTCACAATATGAG
TTGA
Found at i:121018831 original size:121 final size:124
Alignment explanation
Indices: 121018610--121018856 Score: 335
Period size: 120 Copynumber: 2.0 Consensus size: 124
121018600 TCATCGTGCC
* *
121018610 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGC
**
121018675 GTGCCCGAGGCTCAACTCACCTCTACAATATGAGTTGATTTTGAAAA-ACAAAAATT-AA
66 GTGCCCGAGGCTCAACTCACCTCTACAATATGAGTTGAAATT-AAAACACAAAAATTGAA
* * * *
121018733 AAGGCTTAACT-ACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGC
* *
121018794 GTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAA
66 GTG-CCCGAGGCTCAACTCACCTCT-ACAATATGAGTTGAAATTAAAACACAAAAATTGAA
121018855 AA
1 AA
121018857 TACCTCAGCG
Statistics
Matches: 110, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
119 23 0.21
120 31 0.28
121 25 0.23
122 21 0.19
123 10 0.09
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.23
Consensus pattern (124 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGC
GTGCCCGAGGCTCAACTCACCTCTACAATATGAGTTGAAATTAAAACACAAAAATTGAA
Found at i:121018867 original size:72 final size:71
Alignment explanation
Indices: 121018734--121018927 Score: 295
Period size: 72 Copynumber: 2.8 Consensus size: 71
121018724 AAAAATTAAA
* * * * * *
121018734 AGGCTTAACT-ACCTCTCGCAATATGAG-TCAATTTAAAACA-TAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTAAAATACCTCAGCGT
121018796 GCCCCG
66 GCCCCG
*
121018802 AGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATT-AAAATACCTCAGCG
121018867 TGCCCCG
65 TGCCCCG
121018874 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTAAAA
121018928 GGCTTAACTC
Statistics
Matches: 114, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 9 0.08
69 16 0.14
70 11 0.10
71 8 0.07
72 70 0.61
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.23
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTAAAATACCTCAGCGT
GCCCCG
Found at i:121019022 original size:122 final size:124
Alignment explanation
Indices: 121018802--121019048 Score: 365
Period size: 122 Copynumber: 2.0 Consensus size: 124
121018792 GCGTGCCCCG
* * *
121018802 AGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
121018867 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAA-ACAAAAATTAAA
* * * *
121018927 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* ** *
121018989 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACAAAAATTAAA
121019048 A
1 A
121019049 ATACCTCAAC
Statistics
Matches: 111, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
121 13 0.12
122 64 0.58
123 7 0.06
124 1 0.01
125 26 0.23
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.24
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACAAAAATTAAA
Found at i:121019056 original size:193 final size:192
Alignment explanation
Indices: 121018590--121019098 Score: 803
Period size: 194 Copynumber: 2.7 Consensus size: 192
121018580 AAGCAGAAAT
* * * *
121018590 TAAAGATACCTCATCGTG--CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACA
1 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACA
* **
121018653 CAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCT-ACAATATGAGTTGATTTT
66 CAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT
121018717 GAAAAACAAAAATTAAAAGGCTTAACTACCTCTCGCAATATGAGTCAATTTAAAACATAAAC
131 GAAAAACAAAAATTAAAAGGCTTAACTACCTCTCGCAATATGAGTCAATTTAAAACATAAAC
121018779 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACA
1 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACA
121018844 CAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAAT
66 CAAAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAAT
121018909 T-AAAACACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAAC
130 TGAAAA-ACAAAAATTAAAAGGCTTAACT-ACCTCTCGCAATATGAGTCAATTTAAAACATAAAC
** *
121018973 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAA-A
1 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACA
* * ** * *
121019037 CAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTTAACTCATCTCTCGCAATATGAGTTGA
66 CAAAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
121019099 TTTTCCTTGA
Statistics
Matches: 297, Mismatches: 17, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
189 16 0.05
191 68 0.23
192 25 0.08
193 93 0.31
194 95 0.32
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.25
Consensus pattern (192 bp):
TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGAAATTAAAACA
CAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT
GAAAAACAAAAATTAAAAGGCTTAACTACCTCTCGCAATATGAGTCAATTTAAAACATAAAC
Found at i:121019070 original size:71 final size:70
Alignment explanation
Indices: 121018927--121019102 Score: 230
Period size: 71 Copynumber: 2.5 Consensus size: 70
121018917 AAAAATTAAA
* * * * *
121018927 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTTAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
121018991 CCCCG
66 CCCCG
* *
121018996 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTTAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
121019061 GTCTTG
65 GCCCCG
121019067 AGGCTTAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTTAACTCACT-TCTCGCAATATGAGTTGATTTT
121019103 CCTTGAAAAG
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 61 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (70 bp):
AGGCTTAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:121030104 original size:30 final size:30
Alignment explanation
Indices: 121030068--121030128 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
121030058 TTTGAAAAAT
121030068 AGAAATT-AAAAGACTCAACTCAACTCTCGC
1 AGAAATTAAAAAG-CTCAACTCAACTCTCGC
*
121030098 AGAAATTAAAAAGCTCAACTCACCTCTCGC
1 AGAAATTAAAAAGCTCAACTCAACTCTCGC
121030128 A
1 A
121030129 ATATGAGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.20
Consensus pattern (30 bp):
AGAAATTAAAAAGCTCAACTCAACTCTCGC
Found at i:121030366 original size:78 final size:76
Alignment explanation
Indices: 121030239--121030470 Score: 243
Period size: 77 Copynumber: 3.0 Consensus size: 76
121030229 AAACAGAATC
** ** * * * * *
121030239 TGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATATCGCAATGT
1 TGAAAAACAGAAATTGAAAATACCTCAG-CGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
121030303 GAGTTGATTTTT
65 GAGTTGATTTTT
* * * * * *
121030315 TGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAAT
1 TGAAAAACAGAAATTG--AAAATACCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAAT
121030379 ATGAGTTGATTTTTT
63 ATGAGTTGA-TTTTT
* * *
121030394 TGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATT
1 TGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
121030459 AGTTGATTTTT
66 AGTTGATTTTT
121030470 T
1 T
121030471 TTTGAAAGGC
Statistics
Matches: 129, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
76 20 0.16
77 46 0.36
78 43 0.33
79 20 0.16
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.30
Consensus pattern (76 bp):
TGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTT
Found at i:121030445 original size:77 final size:78
Alignment explanation
Indices: 121030278--121030492 Score: 256
Period size: 77 Copynumber: 2.7 Consensus size: 78
121030268 ATGTGACCCG
* * * * * *
121030278 AGGCTCAACTCACATATCGCAATGTGAGTTGA-TTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATACCT
* * * *
121030342 CAGTGTGTGATCTGA
64 CAGCGCGTGAGCTCA
*
121030357 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
121030421 GCGCGTGAGC-CA
66 GCGCGTGAGCTCA
* *
121030433 AGGCTCAACTCACCTCTCGCAATATTAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAGAAATTGAAAA
121030493 ACGGAAATTG
Statistics
Matches: 119, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
76 2 0.02
77 46 0.39
78 27 0.23
79 44 0.37
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.30
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
GCGCGTGAGCTCA
Found at i:121030534 original size:248 final size:243
Alignment explanation
Indices: 121030108--121030734 Score: 759
Period size: 248 Copynumber: 2.6 Consensus size: 243
121030098 AGAAATTAAA
*
121030108 AAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAAAAAACCGAAATTGAAAATA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG----AAAAACAGAAATTGAAAATA
*
121030173 GCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA----TTTTTGAAAACA
61 GCTCAGCGCGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTGAAAACA
** * *
121030234 G-AATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATATCGC
126 GAAAT-TGAAAAACAGAAATTGAAAATACCTCGACATATGACCCGAGGCTCAACTCACATATCAC
** * * * *
121030298 AATGTGAGTTGA-TTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTG
190 AATACGAGTTGATTTTTTTG-AAAACAGAAATTG--AAAATACCTCAGCGTGT--CCTG
*
121030356 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATAGCTCA
* * *
121030421 GCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATTAGTTGATTTTTTTTTGAAAGGCAGAAA
66 GCGCGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTGAAA-ACAGAAA
* * * * * * *
121030486 TTGAAAAACGGAAATTGAAAATACCTCGGCGTATGACCTGAGGCTCAACTCGCCTCTCACAATAC
130 TTGAAAAACAGAAATTGAAAATACCTCGACATATGACCCGAGGCTCAACTCACATATCACAATAC
* *
121030551 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
195 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTG
* *
121030600 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCA
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATAGCTCA
* * ** * * *
121030665 --GCATG-TCTTGAGGCTCAACTCATTTCTCACAAGATGAGTTGATTTTTTTTTGAAAAACAGAA
66 GCGCGTGAGC-CAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTG-AAAACAGAA
121030727 ATTGAAAA
129 ATTGAAAA
121030735 TACCTCAGCA
Statistics
Matches: 332, Mismatches: 38, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
241 1 0.00
242 54 0.16
243 67 0.20
244 65 0.20
246 15 0.05
247 18 0.05
248 102 0.31
249 10 0.03
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (243 bp):
AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATAGCTCA
GCGCGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAAT
TGAAAAACAGAAATTGAAAATACCTCGACATATGACCCGAGGCTCAACTCACATATCACAATACG
AGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTG
Found at i:121030556 original size:93 final size:93
Alignment explanation
Indices: 121030393--121030564 Score: 229
Period size: 93 Copynumber: 1.8 Consensus size: 93
121030383 GTTGATTTTT
* * * * *
121030393 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCATGAGCCAAGGCTCAACTCACCTCTCACAATAC
*
121030458 TAGTTGATTTTTTTTTGAAAGGCAGAAA
66 GAGTTGATTTTTTTTTGAAAGGCAGAAA
* * * * *
121030486 TTGAAAAACGGAAATTGAAAATACCTCGGCGTATGA-CCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCATGAGCC-AAGGCTCAACTCACCTCTCACAATA
121030550 CGAGTTGATTTTTTT
65 CGAGTTGATTTTTTT
121030565 GACAACAGAA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
92 2 0.03
93 65 0.97
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (93 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCATGAGCCAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTTTTTTTTGAAAGGCAGAAA
Found at i:121030741 original size:77 final size:75
Alignment explanation
Indices: 121030486--121030838 Score: 453
Period size: 77 Copynumber: 4.7 Consensus size: 75
121030476 AAGGCAGAAA
* * * * *** *
121030486 TTGAAAAACGGAAATTGAAAATACCTCGGCGTATGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--ATGTCTTGAGGCTCAACTCATTTCTCACAATAT
121030551 GAGTTGATTTTT
64 GAGTTGATTTTT
* * * * ** *
121030563 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
121030627 GTTGATTTTT
66 GTTGATTTTT
*
121030637 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAGATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
121030702 GTTGATTTTTTT
66 GTTGA--TTTTT
* *
121030714 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
*
121030779 GTTGA--ATT
66 GTTGATTTTT
* *
121030787 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
121030839 TGAACAGAAA
Statistics
Matches: 249, Mismatches: 24, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
72 46 0.18
73 5 0.02
74 43 0.17
75 58 0.23
76 22 0.09
77 75 0.30
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
GTTGATTTTT
Found at i:121030814 original size:149 final size:148
Alignment explanation
Indices: 121030486--121030838 Score: 467
Period size: 149 Copynumber: 2.4 Consensus size: 148
121030476 AAGGCAGAAA
* * * * *** *
121030486 TTGAAAAACGGAAATTGAAAATACCTCGGCGTATGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--ATGTCTTGAGGCTCAACTCATTTCTCACAAGAC
* * * *
121030551 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
64 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTC
*
121030616 TCGCAATATGAGTTGATTTTT
129 TCGCAATATGAGTTGA-TATT
*
121030637 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAGATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAGACGA
* **
121030702 GTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTT
66 GTTGA--TTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCT
121030767 CTCGCAATATGAGTTGA-ATT
128 CTCGCAATATGAGTTGATATT
* *
121030787 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
121030839 TGAACAGAAA
Statistics
Matches: 180, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
149 80 0.44
150 5 0.03
151 36 0.20
152 59 0.33
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAGACGA
GTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCTC
GCAATATGAGTTGATATT
Found at i:121030858 original size:49 final size:49
Alignment explanation
Indices: 121030792--121030887 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
121030782 GAATTTTGAA
*
121030792 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
121030841 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
121030888 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:121030873 original size:121 final size:120
Alignment explanation
Indices: 121030720--121030958 Score: 424
Period size: 121 Copynumber: 2.0 Consensus size: 120
121030710 TTTTTTGAAA
*
121030720 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
*
121030785 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTG-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* * *
121030841 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
121030906 TTTTGAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
121030959 CTCGCAATAT
Statistics
Matches: 113, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
120 47 0.42
121 66 0.58
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (120 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:121030976 original size:192 final size:194
Alignment explanation
Indices: 121030643--121031030 Score: 618
Period size: 192 Copynumber: 2.0 Consensus size: 194
121030633 TTTTTTGAAA
*
121030643 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAGATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAAGATGAGTTGA-
* *
121030708 TTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCA
65 --TATTTTG-AAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCA
*
121030773 ATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATT
127 ATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATT
121030838 TTG
192 TTG
* * * *
121030841 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAAGATGAGTTGAT
* * *
121030905 ATTTTG-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
66 ATTTTGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATAT
*
121030969 GAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
131 GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
121031031 CTCGCAATAT
Statistics
Matches: 178, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
192 114 0.64
194 5 0.03
198 59 0.33
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (194 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAAGATGAGTTGAT
ATTTTGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATAT
GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:121031028 original size:72 final size:71
Alignment explanation
Indices: 121030835--121031052 Score: 402
Period size: 71 Copynumber: 3.1 Consensus size: 71
121030825 GGCTCAACTC
121030835 ATTTTG-AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 ATTTTGAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
121030899 AGTTGA
66 AGTTGA
121030905 ATTTTGAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 ATTTTGAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
121030970 AGTTGA
66 AGTTGA
*
121030976 ATTTTGAAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
1 ATTTTG-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
*
121031041 GAGTTAA
65 GAGTTGA
121031048 ATTTT
1 ATTTT
121031053 TTTTTTGAAA
Statistics
Matches: 144, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
70 6 0.04
71 70 0.49
72 68 0.47
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Consensus pattern (71 bp):
ATTTTGAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
AGTTGA
Found at i:121031201 original size:54 final size:55
Alignment explanation
Indices: 121031101--121031206 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
121031091 GAACCGAGGC
* *
121031101 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
121031155 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
121031207 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:121031213 original size:13 final size:13
Alignment explanation
Indices: 121031186--121031219 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
121031176 GAGTTGATTC
*
121031186 TTGAACAACATAAA
1 TTGAA-AACAGAAA
121031200 TTGAAAACAGAAA
1 TTGAAAACAGAAA
121031213 TTGAAAA
1 TTGAAAA
121031220 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:121031267 original size:140 final size:140
Alignment explanation
Indices: 121031057--121031404 Score: 626
Period size: 140 Copynumber: 2.5 Consensus size: 140
121031047 AATTTTTTTT
*
121031057 TTGAAAGACAGAAATTGAAAATACCTTAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
121031121 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
121031186 TTGAACAACATAAA
127 TTGAACAACATAAA
121031200 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
121031265 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
121031330 ACAACGTAAA
131 ACAACATAAA
*
121031340 TTGAAAAAAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
121031405 TAGAAATTAA
Statistics
Matches: 201, Mismatches: 3, Indels: 5
0.96 0.01 0.02
Matches are distributed among these distances:
139 3 0.01
140 170 0.85
142 22 0.11
143 6 0.03
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACATAAA
Found at i:121031341 original size:54 final size:54
Alignment explanation
Indices: 121031241--121031346 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
121031231 GACCTGAGGC
*
121031241 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
121031295 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
121031347 AAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:121031471 original size:72 final size:72
Alignment explanation
Indices: 121031337--121031502 Score: 239
Period size: 72 Copynumber: 2.3 Consensus size: 72
121031327 TGAACAACGT
* * *
121031337 AAATTGAAAAA-AGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
121031401 TGAGTAG
66 TGAGTAG
*
121031408 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
1 AAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAAT
*
121031472 ATGAGTTG
65 ATGAGTAG
**
121031480 ATTTTGAAAAACAAAAATT-AAAA
1 AAATTGAAAAACAAAAATTGAAAA
121031503 GGCTTAACTC
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
70 4 0.05
71 10 0.12
72 67 0.79
73 4 0.05
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (72 bp):
AAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
TGAGTAG
Found at i:121031597 original size:122 final size:123
Alignment explanation
Indices: 121031377--121031623 Score: 381
Period size: 122 Copynumber: 2.0 Consensus size: 123
121031367 GCGTGACCTG
* *
121031377 AGGCTCAACTCACCTCTCGCAATATGAGTAGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTA-AAATTAAAACACAAAAACTAAAAATACCTCAGCG
*
121031442 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
65 TGCCCCGAGGCTCAACTCACCTATAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
121031502 AGGCTTAACTCACCTCTCGCAATATGAGT-CAATTTAAA-ACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTAAAATTAAAACACAAAAACTAAAAATACCTCAGCGT
* *
121031565 GCCCCGAGGCTCAACTCACTTATCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 GCCCCGAGGCTCAACTCACCTATAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
121031623 A
1 A
121031624 ATACCTCAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 16 0.14
122 62 0.55
123 7 0.06
125 28 0.25
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (123 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTAAAATTAAAACACAAAAACTAAAAATACCTCAGCGT
GCCCCGAGGCTCAACTCACCTATAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:121031645 original size:71 final size:70
Alignment explanation
Indices: 121031502--121031676 Score: 210
Period size: 71 Copynumber: 2.5 Consensus size: 70
121031492 AAAAATTAAA
* * * * * * *
121031502 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACATG
121031566 CCCCG
66 CCCCG
* *
121031571 AGGCTCAACTCACTTATCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACAT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACAT
* **
121031636 GTCTTG
65 GCCCCG
121031642 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
121031677 CCCTTGAAAA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 25 0.28
70 6 0.07
71 59 0.66
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACATG
CCCCG
Found at i:121039910 original size:12 final size:12
Alignment explanation
Indices: 121039890--121039925 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
121039880 TGGGATATGC
*
121039890 AATGTATGAATG
1 AATGCATGAATG
121039902 AATGCATGAATG
1 AATGCATGAATG
121039914 AATGCATGAATG
1 AATGCATGAATG
121039926 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:121044747 original size:21 final size:21
Alignment explanation
Indices: 121044723--121044827 Score: 99
Period size: 21 Copynumber: 4.8 Consensus size: 21
121044713 ATACACACAT
*
121044723 ATATATATAATAGTATTAGAA
1 ATATATATAATAATATTAGAA
121044744 ATATATA-ATATAATATTAGAA
1 ATATATATA-ATAATATTAGAA
121044765 ATATATAT-ATAATAGTATAAAAGAA
1 ATATATATAATAATA-T-T---AGAA
*
121044790 AAATATAACTAATAATATTA-AA
1 ATATAT-A-TAATAATATTAGAA
121044812 ATATATATAATAATAT
1 ATATATATAATAATAT
121044828 ATGTGAAATA
Statistics
Matches: 71, Mismatches: 3, Indels: 21
0.75 0.03 0.22
Matches are distributed among these distances:
20 16 0.23
21 27 0.38
22 8 0.11
23 1 0.01
25 9 0.13
26 2 0.03
27 2 0.03
28 6 0.08
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (21 bp):
ATATATATAATAATATTAGAA
Found at i:121044772 original size:25 final size:25
Alignment explanation
Indices: 121044744--121044828 Score: 81
Period size: 25 Copynumber: 3.5 Consensus size: 25
121044734 AGTATTAGAA
121044744 ATATATAATATAATATTAGAAATAT
1 ATATATAATATAATATTAGAAATAT
**
121044769 ATATATAATAGT-ATAAAAGAAA-A-
1 ATATATAATA-TAATATTAGAAATAT
*
121044792 ATATA-ACTAATAATATTA-AAATAT
1 ATATATAAT-ATAATATTAGAAATAT
121044816 ATATAATAATATA
1 ATAT-ATAATATA
121044829 TGTGAAATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
22 6 0.13
23 11 0.23
24 5 0.11
25 22 0.47
26 3 0.06
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAATATAATATTAGAAATAT
Found at i:121044796 original size:48 final size:43
Alignment explanation
Indices: 121044721--121044840 Score: 127
Period size: 48 Copynumber: 2.7 Consensus size: 43
121044711 ACATACACAC
*
121044721 ATATATATATAATAGTATTAGAAATATATAAT-ATAATATTAGAA
1 ATATATATATAATAGTATAAGAAATATA-AATAATAATATTA-AA
*
121044765 ATATATATATAATAGTATAAAAGAAAAATATAACTAATAATATTAAA
1 ATATATATATAATAGTAT--AAG--AAATATAAATAATAATATTAAA
**
121044812 ATATATATAATAATA-TATGTGAAATATAA
1 ATATATAT-ATAATAGTATAAGAAATATAA
121044841 TATTAAAAAC
Statistics
Matches: 66, Mismatches: 4, Indels: 13
0.80 0.05 0.16
Matches are distributed among these distances:
43 8 0.12
44 18 0.27
45 1 0.02
46 2 0.03
47 15 0.23
48 22 0.33
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (43 bp):
ATATATATATAATAGTATAAGAAATATAAATAATAATATTAAA
Found at i:121051005 original size:19 final size:20
Alignment explanation
Indices: 121050960--121051005 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
121050950 GAAAATCGTC
121050960 TAATTTTCTTTATTTTTTAA
1 TAATTTTCTTTATTTTTTAA
*
121050980 -AATATTTTTTTATTTTTTAA
1 TAAT-TTTCTTTATTTTTTAA
121051000 TAATTT
1 TAATTT
121051006 ATTCAATTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 3 0.13
20 17 0.74
21 3 0.13
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (20 bp):
TAATTTTCTTTATTTTTTAA
Found at i:121053353 original size:17 final size:18
Alignment explanation
Indices: 121053331--121053366 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
121053321 ATTTATCTAT
121053331 TTATATTTCCAT-TATTA
1 TTATATTTCCATGTATTA
*
121053348 TTATATTTCTATGTATTA
1 TTATATTTCCATGTATTA
121053366 T
1 T
121053367 ATTTCTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (18 bp):
TTATATTTCCATGTATTA
Found at i:121053372 original size:15 final size:15
Alignment explanation
Indices: 121053346--121053374 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
121053336 TTTCCATTAT
121053346 TATTATATTTCTATG
1 TATTATATTTCTATG
121053361 TATTATATTTCTAT
1 TATTATATTTCTAT
121053375 TTCTATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (15 bp):
TATTATATTTCTATG
Found at i:121053412 original size:3 final size:3
Alignment explanation
Indices: 121053396--121053448 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
121053386 TATTAACATC
*
121053396 ATT ATT -TT -TT ATT ATT ATTT ATAT ATT ATT ATT ATT AGT ATT ATT
1 ATT ATT ATT ATT ATT ATT A-TT AT-T ATT ATT ATT ATT ATT ATT ATT
121053441 ATT ATT AT
1 ATT ATT AT
121053449 CATCATTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 4 0.09
3 35 0.78
4 6 0.13
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:121056952 original size:31 final size:31
Alignment explanation
Indices: 121056909--121057006 Score: 115
Period size: 31 Copynumber: 3.2 Consensus size: 31
121056899 CTTAACAACC
* * *
121056909 TAGTAACTTAAATGAAAACTTTTGAATATTT
1 TAGTGACTTAAATGAAAACTTTCGAATAGTT
121056940 TAGTGACTTAAATGAAAACTTTCGAATAGTT
1 TAGTGACTTAAATGAAAACTTTCGAATAGTT
** * * **
121056971 TAGTGACCAAAATGAAATCTTACCCATAGTT
1 TAGTGACTTAAATGAAAACTTTCGAATAGTT
121057002 TAGTG
1 TAGTG
121057007 GCTAATGACG
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (31 bp):
TAGTGACTTAAATGAAAACTTTCGAATAGTT
Found at i:121057420 original size:160 final size:160
Alignment explanation
Indices: 121057156--121057477 Score: 626
Period size: 160 Copynumber: 2.0 Consensus size: 160
121057146 TTTGACTATC
*
121057156 AACCTTTCAAAAAGAGCCGAATTATTGTTTTTTAATAGAAATATTGACTAAAAAAACAAATTTTT
1 AACCTTTCAAAAAGAGCCGAATTATTATTTTTTAATAGAAATATTGACTAAAAAAACAAATTTTT
121057221 AAGCATGATATCTCGCATGACAATTCACGTATACTACATGCTATTTTCTTTTGAATTTTATGAAC
66 AAGCATGATATCTCGCATGACAATTCACGTATACTACATGCTATTTTCTTTTGAATTTTATGAAC
121057286 TTTCAATTTTTTTCAAACACATGAATTTCA
131 TTTCAATTTTTTTCAAACACATGAATTTCA
*
121057316 AACCTTTCAAAAAGAGCCGAATTATTATTTTTTAATAGAAATATTGACTAAAAAAACAATTTTTT
1 AACCTTTCAAAAAGAGCCGAATTATTATTTTTTAATAGAAATATTGACTAAAAAAACAAATTTTT
121057381 AAGCATGATATCTCGCATGACAATTCACGTATACTACATGCTATTTTCTTTTGAATTTTATGAAC
66 AAGCATGATATCTCGCATGACAATTCACGTATACTACATGCTATTTTCTTTTGAATTTTATGAAC
121057446 TTTCAATTTTTTTCAAACACATGAATTTCA
131 TTTCAATTTTTTTCAAACACATGAATTTCA
121057476 AA
1 AA
121057478 TCCATCATAT
Statistics
Matches: 160, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
160 160 1.00
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (160 bp):
AACCTTTCAAAAAGAGCCGAATTATTATTTTTTAATAGAAATATTGACTAAAAAAACAAATTTTT
AAGCATGATATCTCGCATGACAATTCACGTATACTACATGCTATTTTCTTTTGAATTTTATGAAC
TTTCAATTTTTTTCAAACACATGAATTTCA
Found at i:121059783 original size:21 final size:21
Alignment explanation
Indices: 121059757--121059796 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
121059747 AAACACTCTC
121059757 AAAATGATATTTATTATTTGT
1 AAAATGATATTTATTATTTGT
* *
121059778 AAAATGTTGTTTATTATTT
1 AAAATGATATTTATTATTT
121059797 ACCTAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (21 bp):
AAAATGATATTTATTATTTGT
Found at i:121060017 original size:29 final size:29
Alignment explanation
Indices: 121059967--121060022 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
121059957 GCGCGACTCT
*
121059967 TTTTTTTACATTAAAAAATATTTTTTTTG
1 TTTTTTTACAATAAAAAATATTTTTTTTG
*
121059996 TTTTTTTA-AATAAAATATTATTTTTTT
1 TTTTTTTACAATAAAA-AATATTTTTTT
121060023 ATTTTCAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (29 bp):
TTTTTTTACAATAAAAAATATTTTTTTTG
Found at i:121060136 original size:26 final size:27
Alignment explanation
Indices: 121060072--121060138 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 27
121060062 AGGTTGCGCT
*
121060072 TATCTCAGAGGCGCGACTAGTTGAGCC
1 TATCTCAGAGGCGCGACTAGATGAGCC
* * * *
121060099 TTTCTAATAGGCGCGACTA-ATGTGCC
1 TATCTCAGAGGCGCGACTAGATGAGCC
121060125 TATCTCAGAGGCGC
1 TATCTCAGAGGCGC
121060139 AAATGGTGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 16 0.50
27 16 0.50
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (27 bp):
TATCTCAGAGGCGCGACTAGATGAGCC
Found at i:121061030 original size:28 final size:28
Alignment explanation
Indices: 121060991--121061045 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
121060981 AATAAAGATA
*
121060991 AAAAAATAATATTTT-ATTTAAAAAAAC
1 AAAAAATAATATTTTAATATAAAAAAAC
121061018 AAAAAATATATATTTTAATATAAAAAAA
1 AAAAAATA-ATATTTTAATATAAAAAAA
121061046 AGTCGCGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 8 0.32
28 7 0.28
29 10 0.40
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (28 bp):
AAAAAATAATATTTTAATATAAAAAAAC
Found at i:121063477 original size:15 final size:15
Alignment explanation
Indices: 121063459--121063487 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
121063449 TACTAGTATT
121063459 ATTTTATAAAATTTA
1 ATTTTATAAAATTTA
121063474 ATTTTATAAAATTT
1 ATTTTATAAAATTT
121063488 TTATTCTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTTATAAAATTTA
Found at i:121066430 original size:23 final size:23
Alignment explanation
Indices: 121066403--121066446 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
121066393 CATCCTTGTA
121066403 CTTTTATTTTTAAGAATTTAATT
1 CTTTTATTTTTAAGAATTTAATT
* *
121066426 CTTTTATTTTTCAGATTTTAA
1 CTTTTATTTTTAAGAATTTAA
121066447 AATTTTGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (23 bp):
CTTTTATTTTTAAGAATTTAATT
Found at i:121067546 original size:16 final size:18
Alignment explanation
Indices: 121067515--121067551 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
121067505 AAAAATCATT
*
121067515 TAAAATCTTTATAATTTA
1 TAAAATCTTTATAATTAA
121067533 TAAAAT-TTTA-AATTAA
1 TAAAATCTTTATAATTAA
121067549 TAA
1 TAA
121067552 TAATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 4 0.22
18 6 0.33
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAAATCTTTATAATTAA
Found at i:121067610 original size:30 final size:31
Alignment explanation
Indices: 121067538--121067619 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 31
121067528 ATTTATAAAA
121067538 TTTTAAATTAATAATAATAAAATTATACTTTAAC
1 TTTTAAA--AATAATAA-AAAATTATACTTTAAC
*
121067572 TCTCTAAAAATAATAAAAAATTA-A-TTTAATC
1 T-TTTAAAAATAATAAAAAATTATACTTTAA-C
* *
121067603 TTTTAAAAGTTATAAAA
1 TTTTAAAAATAATAAAA
121067620 GTATAATCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
30 18 0.43
31 3 0.07
32 7 0.17
33 8 0.19
34 1 0.02
35 5 0.12
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.40
Consensus pattern (31 bp):
TTTTAAAAATAATAAAAAATTATACTTTAAC
Found at i:121067626 original size:25 final size:24
Alignment explanation
Indices: 121067598--121067648 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
121067588 AAAATTAATT
* *
121067598 TAATCTTTTAAAAGTTATAAAAGTA
1 TAATCTATTAAAA-TAATAAAAGTA
*
121067623 TAATCTATTAAAATAATAAAATTA
1 TAATCTATTAAAATAATAAAAGTA
121067647 TA
1 TA
121067649 TTTTTATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (24 bp):
TAATCTATTAAAATAATAAAAGTA
Found at i:121071625 original size:23 final size:23
Alignment explanation
Indices: 121071589--121071632 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
121071579 AAATACAACA
* *
121071589 AAATTTATGCTTTAATGTTTGGC
1 AAATTTATACTTTAATATTTGGC
*
121071612 AAATTTATATTTTAATATTTG
1 AAATTTATACTTTAATATTTG
121071633 ATTCGTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (23 bp):
AAATTTATACTTTAATATTTGGC
Found at i:121075146 original size:18 final size:18
Alignment explanation
Indices: 121075119--121075153 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
121075109 TGTCATGTGA
* *
121075119 ATAAATAATTTAAAATTT
1 ATAAAAAATTAAAAATTT
121075137 ATAAAAAATTAAAAATT
1 ATAAAAAATTAAAAATT
121075154 AAAAGGAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAAAAATTAAAAATTT
Found at i:121086743 original size:6 final size:6
Alignment explanation
Indices: 121086732--121086758 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
121086722 GTTACCAAAG
121086732 CATGTT CATGTT CATGTT CATGTT CAT
1 CATGTT CATGTT CATGTT CATGTT CAT
121086759 TTATGTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
CATGTT
Found at i:121094127 original size:54 final size:54
Alignment explanation
Indices: 121094045--121094153 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
121094035 CCAGCAAACG
*
121094045 ACACTTCAAAGACTTCTCCCAAAGGAGCCTACTCACTTTTAACAAGAAGGATTT
1 ACACTTCAAAGACTTCTCCCAAAGGAGCCTACTCACTCTTAACAAGAAGGATTT
121094099 ACACTTCAAAGACTTCTCCCAAAGGAGCCTACTCACTCTTAACAAGAAGGATTT
1 ACACTTCAAAGACTTCTCCCAAAGGAGCCTACTCACTCTTAACAAGAAGGATTT
121094153 A
1 A
121094154 ATTTTTAACT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.25
Consensus pattern (54 bp):
ACACTTCAAAGACTTCTCCCAAAGGAGCCTACTCACTCTTAACAAGAAGGATTT
Done.