Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 395 of 425
Found at i:121098391 original size:5 final size:5
Alignment explanation
Indices: 121098381--121098405 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
121098371 TATATATACC
121098381 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
121098406 CAAAACATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:121098483 original size:17 final size:17
Alignment explanation
Indices: 121098463--121098503 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
121098453 TTTTGGGGTG
* *
121098463 AAAATAATTTTTTTTAA
1 AAAATAATTATATTTAA
*
121098480 AAAATAATTATATTTGA
1 AAAATAATTATATTTAA
121098497 AAAATAA
1 AAAATAA
121098504 AATGAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (17 bp):
AAAATAATTATATTTAA
Found at i:121101592 original size:24 final size:22
Alignment explanation
Indices: 121101538--121101605 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
121101528 ACTTAAATTA
* **
121101538 TATATTTTTATGATAATAAAAT
1 TATATTTTTATAATTTTAAAAT
* *
121101560 TATAATTTTATCATTTTAATAAT
1 TATATTTTTATAATTTTAA-AAT
121101583 CTATATTTTTATAATTTTTAAAA
1 -TATATTTTTATAA-TTTTAAAA
121101606 AATTAAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
22 15 0.41
23 3 0.08
24 13 0.35
25 6 0.16
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (22 bp):
TATATTTTTATAATTTTAAAAT
Found at i:121102857 original size:25 final size:25
Alignment explanation
Indices: 121102809--121102872 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
121102799 ATGTGAGCCA
* *
121102809 TATAACGGGAAGCTTATCCAAGCTG
1 TATAACGGGAAGCTCATACAAGCTG
* *
121102834 TATATCGGGAAGCTCATACGAGCT-
1 TATAACGGGAAGCTCATACAAGCTG
* *
121102858 AATAACGGGTAGCTC
1 TATAACGGGAAGCTC
121102873 CGAAGAGCCA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 12 0.38
25 20 0.62
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (25 bp):
TATAACGGGAAGCTCATACAAGCTG
Found at i:121104528 original size:24 final size:24
Alignment explanation
Indices: 121104501--121104552 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
121104491 AAATCGAGTT
*
121104501 TCTTTTCCCAATTAAACTTTGTTA
1 TCTTTTCCCAACTAAACTTTGTTA
*
121104525 TCTTTTCCCAACTGAACTTTGTTA
1 TCTTTTCCCAACTAAACTTTGTTA
121104549 TCTT
1 TCTT
121104553 GTTTTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.21, C:0.23, G:0.06, T:0.50
Consensus pattern (24 bp):
TCTTTTCCCAACTAAACTTTGTTA
Found at i:121108717 original size:19 final size:19
Alignment explanation
Indices: 121108693--121108729 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
121108683 GAGTTCTGAA
121108693 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
121108712 AAATGATTTACTTTTCTG
1 AAATGATTTACTTTTCTG
121108730 ACGTTTGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:121108839 original size:22 final size:20
Alignment explanation
Indices: 121108812--121108853 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
121108802 CTGTTTTTAC
121108812 ATATATTAATAAATATATATAT
1 ATATATTAATAAA-AT-TATAT
121108834 ATATATTAATAAAATTATAT
1 ATATATTAATAAAATTATAT
121108854 TTTAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 2 0.10
22 13 0.65
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATATTAATAAAATTATAT
Found at i:121111355 original size:20 final size:19
Alignment explanation
Indices: 121111312--121111357 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
121111302 TGTAGCTAAC
*
121111312 AACATTAAAATATATTCAT
1 AACATTAAAATATATTAAT
121111331 AACATATAAAATATA-TAAT
1 AACAT-TAAAATATATTAAT
121111350 ATACATTA
1 A-ACATTA
121111358 GAAGTGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.35
Consensus pattern (19 bp):
AACATTAAAATATATTAAT
Found at i:121112013 original size:12 final size:12
Alignment explanation
Indices: 121111996--121112061 Score: 53
Period size: 12 Copynumber: 5.5 Consensus size: 12
121111986 ACCAGAATAT
121111996 TAATAATAACAA
1 TAATAATAACAA
121112008 TAATAATAGA-AA
1 TAATAATA-ACAA
* ** *
121112020 TAATATTATTAC
1 TAATAATAACAA
* **
121112032 TAATATTAGGAA
1 TAATAATAACAA
121112044 TAATAATAACAA
1 TAATAATAACAA
121112056 TAATAA
1 TAATAA
121112062 AAAACGAGAA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
12 42 0.98
13 1 0.02
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (12 bp):
TAATAATAACAA
Found at i:121114547 original size:36 final size:36
Alignment explanation
Indices: 121114500--121114573 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
121114490 ATGTGGATCA
121114500 ACTGCATCATCATCATCATTTTGAAGAATCTCAGCC
1 ACTGCATCATCATCATCATTTTGAAGAATCTCAGCC
121114536 ACTGCATCATCATCATCATTTTGAAGAATCTCAGCC
1 ACTGCATCATCATCATCATTTTGAAGAATCTCAGCC
121114572 AC
1 AC
121114574 ACTATCATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.30
Consensus pattern (36 bp):
ACTGCATCATCATCATCATTTTGAAGAATCTCAGCC
Found at i:121114581 original size:36 final size:36
Alignment explanation
Indices: 121114504--121114581 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
121114494 GGATCAACTG
*
121114504 CATCATCATCATCATTTTGAAGAATCTCAGCCACTG
1 CATCATCATCATCATTTTGAAGAATCTCAGCCACTA
121114540 CATCATCATCATCATTTTGAAGAATCTCAGCCAC-A
1 CATCATCATCATCATTTTGAAGAATCTCAGCCACTA
121114575 CTATCAT
1 C-ATCAT
121114582 TTTGCCTCTC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
35 1 0.03
36 39 0.98
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (36 bp):
CATCATCATCATCATTTTGAAGAATCTCAGCCACTA
Found at i:121115306 original size:6 final size:6
Alignment explanation
Indices: 121115295--121115319 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
121115285 TTTGCAACCC
121115295 AAGGGG AAGGGG AAGGGG AAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG A
121115320 GAAGAATGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:121115485 original size:14 final size:14
Alignment explanation
Indices: 121115466--121115492 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
121115456 AGAAAAGCCT
121115466 GAAAAGCTTTTACG
1 GAAAAGCTTTTACG
121115480 GAAAAGCTTTTAC
1 GAAAAGCTTTTAC
121115493 ATGTTACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (14 bp):
GAAAAGCTTTTACG
Found at i:121116622 original size:77 final size:77
Alignment explanation
Indices: 121116491--121116651 Score: 243
Period size: 77 Copynumber: 2.1 Consensus size: 77
121116481 TGATCAAAAA
* * *
121116491 ATTATTATTCTTTTTCAAAAAATCAAGTAGTATAATCGTTTGATTAAGTACACCCATTGATTTTT
1 ATTATAATTCTTTTTCAAAAAATCAAGTAGTATAATCGTTTGATTAAGTACACCCATTCATTTAT
121116556 AGTTAGTGGAAC
66 AGTTAGTGGAAC
* *
121116568 ATTATAATTCTTTTTCAAAAAATCAAGTAGTATAATC-TGTTGATTAATTGCACCCATTCATTTA
1 ATTATAATTCTTTTTCAAAAAATCAAGTAGTATAATCGT-TTGATTAAGTACACCCATTCATTTA
*
121116632 TAGTTATTGGAAC
65 TAGTTAGTGGAAC
*
121116645 ACTATAA
1 ATTATAA
121116652 ATATTTGAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
76 1 0.01
77 75 0.99
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.41
Consensus pattern (77 bp):
ATTATAATTCTTTTTCAAAAAATCAAGTAGTATAATCGTTTGATTAAGTACACCCATTCATTTAT
AGTTAGTGGAAC
Found at i:121119931 original size:16 final size:17
Alignment explanation
Indices: 121119905--121119936 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
121119895 GATTCTCTTG
121119905 TTTTGTTCTTTTTTTTA
1 TTTTGTTCTTTTTTTTA
121119922 TTTT-TTCTTTTTTTT
1 TTTTGTTCTTTTTTTT
121119937 TTCGATGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.03, C:0.06, G:0.03, T:0.88
Consensus pattern (17 bp):
TTTTGTTCTTTTTTTTA
Found at i:121130528 original size:15 final size:16
Alignment explanation
Indices: 121130506--121130548 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
121130496 CATGGTATGT
121130506 ATGATATGCATATG-AC
1 ATGATATGC-TATGCAC
121130522 ATG-TATGCTATGCAC
1 ATGATATGCTATGCAC
121130537 ATGATATG-TATG
1 ATGATATGCTATG
121130549 ATATGCACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.16
15 14 0.56
16 7 0.28
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGATATGCTATGCAC
Found at i:121130561 original size:20 final size:20
Alignment explanation
Indices: 121130495--121130561 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
121130485 ATTTTAGTAA
*
121130495 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* * *
121130515 ATATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
121130535 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
121130555 ACATGAT
1 ACATGAT
121130562 GTATTCATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:121130679 original size:24 final size:24
Alignment explanation
Indices: 121130611--121130704 Score: 131
Period size: 23 Copynumber: 4.0 Consensus size: 24
121130601 GAGGAAGTGC
121130611 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
121130635 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
121130657 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
121130681 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
121130705 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
22 10 0.16
23 23 0.37
24 19 0.30
25 11 0.17
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:121130952 original size:30 final size:30
Alignment explanation
Indices: 121130897--121130959 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 30
121130887 CCGTTACAGT
121130897 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGT-ATATGAAATATGA
121130928 AAAGGCTTCGGCCCATGT-TATGAAATATGA
1 AAAGGCTTCGGCCCA-GTATATGAAATATGA
121130958 AA
1 AA
121130960 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 14 0.45
31 15 0.48
32 2 0.06
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGAAATATGA
Found at i:121131956 original size:35 final size:35
Alignment explanation
Indices: 121131905--121131974 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
121131895 TTTTTCTTCC
*
121131905 TGTGTGAAAAATCCAACAAAAATGAGGAATAAAAA
1 TGTGTGAAAAACCCAACAAAAATGAGGAATAAAAA
*
121131940 TGTGTGAAAAACCCAACAGAAATGAGGAATAAAAA
1 TGTGTGAAAAACCCAACAAAAATGAGGAATAAAAA
121131975 CTATGTATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.56, C:0.10, G:0.19, T:0.16
Consensus pattern (35 bp):
TGTGTGAAAAACCCAACAAAAATGAGGAATAAAAA
Found at i:121141389 original size:6 final size:6
Alignment explanation
Indices: 121141380--121141406 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
121141370 ACGCGTACAT
121141380 GCACAC GCACAC GCACAC GCACAC GCA
1 GCACAC GCACAC GCACAC GCACAC GCA
121141407 TATATATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.48, G:0.19, T:0.00
Consensus pattern (6 bp):
GCACAC
Found at i:121142913 original size:31 final size:33
Alignment explanation
Indices: 121142869--121142945 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 33
121142859 ATAGGACAAG
* *
121142869 AAACAGATTAAGCAAAATTA-TGG-AC-AGTGAA
1 AAACCGATAAAGCAAAATTACTGGAACAAGT-AA
121142900 AAACCGATAAAGC--AATTACTGGAACAAGTAA
1 AAACCGATAAAGCAAAATTACTGGAACAAGTAA
*
121142931 AAACCAATAAAGCAA
1 AAACCGATAAAGCAA
121142946 GATGTTAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
29 5 0.13
30 3 0.08
31 27 0.71
32 3 0.08
ACGTcount: A:0.55, C:0.14, G:0.16, T:0.16
Consensus pattern (33 bp):
AAACCGATAAAGCAAAATTACTGGAACAAGTAA
Found at i:121144122 original size:8 final size:8
Alignment explanation
Indices: 121144085--121144157 Score: 53
Period size: 8 Copynumber: 9.1 Consensus size: 8
121144075 ACAAATGTAC
121144085 TATAT-AA
1 TATATAAA
121144092 TATA-AAA
1 TATATAAA
121144099 TAGTA-AAA
1 TA-TATAAA
121144107 TATTATAAA
1 TA-TATAAA
*
121144116 TAAATAAA
1 TATATAAA
*
121144124 TATTTAAA
1 TATATAAA
*
121144132 TATTTAAA
1 TATATAAA
* *
121144140 TAAAAAACA
1 TATATAA-A
121144149 TATATAAA
1 TATATAAA
121144157 T
1 T
121144158 TTTTTAATAT
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
7 8 0.15
8 34 0.64
9 11 0.21
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (8 bp):
TATATAAA
Found at i:121144151 original size:25 final size:24
Alignment explanation
Indices: 121144095--121144166 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 24
121144085 TATATAATAT
121144095 AAAATAGTA-AAATATTATAAATAAA
1 AAAATA-TATAAATATT-TAAATAAA
* *
121144120 TAAATATTTAAATATTTAAATAAA
1 AAAATATATAAATATTTAAATAAA
* *
121144144 AAACATATATAAATTTTTTAATA
1 AAA-ATATATAAATATTTAAATA
121144167 TTATTTATGA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 11 0.28
25 28 0.72
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (24 bp):
AAAATATATAAATATTTAAATAAA
Found at i:121148964 original size:20 final size:21
Alignment explanation
Indices: 121148939--121148978 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
121148929 CCAAATTAAC
*
121148939 TATTTTGGAAT-TTGTGGTTG
1 TATTTTGCAATATTGTGGTTG
*
121148959 TATTTTTCAATATTGTGGTT
1 TATTTTGCAATATTGTGGTT
121148979 TTTAAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.17, C:0.03, G:0.23, T:0.57
Consensus pattern (21 bp):
TATTTTGCAATATTGTGGTTG
Found at i:121153381 original size:22 final size:22
Alignment explanation
Indices: 121153356--121153400 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
121153346 ATTCATGACT
121153356 AACATTCATTCGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
*
121153378 AACATTCATTTGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
121153400 A
1 A
121153401 TTCATCCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (22 bp):
AACATTCATTCGTCATTTATTC
Found at i:121156774 original size:3 final size:3
Alignment explanation
Indices: 121156756--121156803 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
121156746 TTTAATGAAA
*
121156756 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
121156800 TAT T
1 TAT T
121156804 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 7 0.18
3 32 0.82
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:121156776 original size:11 final size:11
Alignment explanation
Indices: 121156760--121156800 Score: 73
Period size: 11 Copynumber: 3.7 Consensus size: 11
121156750 ATGAAATATT
121156760 TTATTATTTTA
1 TTATTATTTTA
*
121156771 TTATTATTTCA
1 TTATTATTTTA
121156782 TTATTATTTTA
1 TTATTATTTTA
121156793 TTATTATT
1 TTATTATT
121156801 ATTTAGTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:121156784 original size:19 final size:19
Alignment explanation
Indices: 121156756--121156797 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
121156746 TTTAATGAAA
*
121156756 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
121156775 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
121156794 TATT
1 TATT
121156798 ATTATTTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:121156785 original size:14 final size:13
Alignment explanation
Indices: 121156756--121156805 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 13
121156746 TTTAATGAAA
121156756 TATT-TTATTA-T
1 TATTATTATTATT
121156767 T-TTATTATTATT
1 TATTATTATTATT
121156779 TCATTATTA-T-TT
1 T-ATTATTATTATT
121156791 TATTATTATTATT
1 TATTATTATTATT
121156804 TA
1 TA
121156806 GTATAAAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
10 2 0.06
11 14 0.42
12 6 0.18
13 5 0.15
14 6 0.18
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (13 bp):
TATTATTATTATT
Found at i:121158573 original size:9 final size:9
Alignment explanation
Indices: 121158561--121158595 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
121158551 AGCCAAAAGA
121158561 AAAAAAAAC
1 AAAAAAAAC
121158570 AAAAAACAAC
1 AAAAAA-AAC
121158580 AAAAAAAAC
1 AAAAAAAAC
121158589 AAAAAAA
1 AAAAAAA
121158596 GGGGCAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:121158573 original size:10 final size:10
Alignment explanation
Indices: 121158555--121158595 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
121158545 TGCAAAAGCC
*
121158555 AAAAGAAAAA
1 AAAACAAAAA
121158565 AAAACAAAAA
1 AAAACAAAAA
*
121158575 ACAAC-AAAA
1 AAAACAAAAA
121158584 AAAACAAAAA
1 AAAACAAAAA
121158594 AA
1 AA
121158596 GGGGCAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAACAAAAA
Found at i:121158884 original size:13 final size:13
Alignment explanation
Indices: 121158866--121158891 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
121158856 CGGTTTAAGG
121158866 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
121158879 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
121158892 ATTTCATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:121159026 original size:13 final size:13
Alignment explanation
Indices: 121159008--121159032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121158998 CCACCGTGCG
121159008 CGGTGGCCGGCGA
1 CGGTGGCCGGCGA
121159021 CGGTGGCCGGCG
1 CGGTGGCCGGCG
121159033 GCAGTGGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.32, G:0.56, T:0.08
Consensus pattern (13 bp):
CGGTGGCCGGCGA
Found at i:121159803 original size:16 final size:16
Alignment explanation
Indices: 121159778--121159813 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
121159768 TATTTTTAAC
*
121159778 ATATATATGTATATAT
1 ATATACATGTATATAT
*
121159794 ATATACATGTATGTAT
1 ATATACATGTATATAT
121159810 ATAT
1 ATAT
121159814 TTATGAAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (16 bp):
ATATACATGTATATAT
Found at i:121159911 original size:16 final size:17
Alignment explanation
Indices: 121159892--121159931 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
121159882 TTTTTAATAC
*
121159892 TATATTATGTAT-TTAT
1 TATATTATATATATTAT
121159908 TATATTATATATAGTTAT
1 TATATTATATATA-TTAT
121159926 TATATT
1 TATATT
121159932 TTTATGTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 11 0.52
18 10 0.48
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
TATATTATATATATTAT
Found at i:121159916 original size:21 final size:21
Alignment explanation
Indices: 121159892--121159945 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 21
121159882 TTTTTAATAC
121159892 TATATTATGTATTTATTATAT
1 TATATTATGTATTTATTATAT
*
121159913 TATA-TA--TAGTTATTATAT
1 TATATTATGTATTTATTATAT
*
121159931 T-T-TTATGTATATATT
1 TATATTATGTATTTATT
121159946 TTTAATATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 8
0.71 0.08 0.21
Matches are distributed among these distances:
17 3 0.11
18 12 0.44
19 6 0.22
20 2 0.07
21 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (21 bp):
TATATTATGTATTTATTATAT
Found at i:121160158 original size:3 final size:3
Alignment explanation
Indices: 121160150--121160190 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
121160140 TCTACGTTGC
*
121160150 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TTT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
121160191 CATTGTTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:121172374 original size:44 final size:44
Alignment explanation
Indices: 121172258--121173369 Score: 1469
Period size: 44 Copynumber: 26.2 Consensus size: 44
121172248 TTGAAACAAG
*
121172258 TAACAGATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
** * *
121172302 T----GATTTGGTATCTCTGTAACGGCGGAGAGCAGATTGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* **
121172342 TAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121172386 T----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* * **
121172426 TAACATATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121172470 T----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
121172510 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121172554 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAAA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
** * *
121172598 TAACAGATTTGGTATCTCTGTAACGGCGGAGAGCAGATTGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
121172642 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121172686 T----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
** * *
121172726 T----GATTTGGTATCTCTGTAACGGCGGAGAGCAGATTGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* **
121172766 TAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121172810 T----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* * *
121172850 TAACATATTTGGCGTCTCTATAGCGGTAGG-GAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGG-CGGAGAGCAGATCGAAGA
*
121172894 T----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121172934 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAAA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
** * *
121172978 TAACAGATTTGGTATCTCTGTAACGGCGGAGAGCAGATTGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121173022 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCATATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121173066 T----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* *
121173106 TAACAGATTTGGCGTCTCTGTAGCGGCTGAGAGCAGATTGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* *
121173150 T----GATTTGGCATCTCTATAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
121173190 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* * *
121173234 TAACAGATTTAGCGTCTCTGTAGCGGCTGAGAGCAGATTGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* *
121173278 T----GATTTGGCATCTCTATAGCGGCGGAGAGCAGATCGAAGA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* *
121173318 TAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAAA
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121173362 TAATAGAT
1 TAACAGAT
121173370 CAGTGTTCCT
Statistics
Matches: 934, Mismatches: 96, Indels: 76
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.00
40 360 0.39
44 570 0.61
45 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.23
Consensus pattern (44 bp):
TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGA
Found at i:121172399 original size:84 final size:84
Alignment explanation
Indices: 121172258--121173369 Score: 1558
Period size: 84 Copynumber: 13.1 Consensus size: 84
121172248 TTGAAACAAG
* * *
121172258 TAACAGATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATGATTTGGTATCTCTGTAACG
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
*
121172323 GCGGAGAGCAGATTGAAGA
66 GCGGAGAGCAGATCGAAGA
* **
121172342 TAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
121172407 GCGGAGAGCAGATCGAAGA
66 GCGGAGAGCAGATCGAAGA
* * **
121172426 TAACATATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
121172491 GCGGAGAGCAGATCGAAGA
66 GCGGAGAGCAGATCGAAGA
*
121172510 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGT
*
121172575 AGCGGCGGAGAGCAGATCGAAAA
62 AGCGGCGGAGAGCAGATCGAAGA
** * * *
121172598 TAACAGATTTGGTATCTCTGTAACGGCGGAGAGCAGATTGAAGATAACAGATTTGGCGTCTCTGT
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGT
121172663 AGCGGCGGAGAGCAGATCGAAGA
62 AGCGGCGGAGAGCAGATCGAAGA
* * *
121172686 T----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGTATCTCTGTAACG
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
*
121172747 GCGGAGAGCAGATTGAAGA
66 GCGGAGAGCAGATCGAAGA
* **
121172766 TAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
121172831 GCGGAGAGCAGATCGAAGA
66 GCGGAGAGCAGATCGAAGA
* * *
121172850 TAACATATTTGGCGTCTCTATAGCGGTAGG-GAGCAGATCGAAGATGATTTGGCATCTCTGTAGC
1 TAACAGATTTGGCGTCTCTGTAGCGG-CGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGC
121172914 GGCGGAGAGCAGATCGAAGA
65 GGCGGAGAGCAGATCGAAGA
* *
121172934 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAAATAACAGATTTGGTATCTCTGT
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGT
* *
121172999 AACGGCGGAGAGCAGATTGAAGA
62 AGCGGCGGAGAGCAGATCGAAGA
*
121173022 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCATATCGAAGATGATTTGGCATCTCTGTAGCG
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
121173087 GCGGAGAGCAGATCGAAGA
66 GCGGAGAGCAGATCGAAGA
* * *
121173106 TAACAGATTTGGCGTCTCTGTAGCGGCTGAGAGCAGATTGAAGATGATTTGGCATCTCTATAGCG
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
121173171 GCGGAGAGCAGATCGAAGA
66 GCGGAGAGCAGATCGAAGA
* *
121173190 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTAGCGTCTCTGT
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGT
* *
121173255 AGCGGCTGAGAGCAGATTGAAGA
62 AGCGGCGGAGAGCAGATCGAAGA
* * *
121173278 T----GATTTGGCATCTCTATAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
1 TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGT
* *
121173339 AGCGGCAGAGAGCAGATCGAAAA
62 AGCGGCGGAGAGCAGATCGAAGA
*
121173362 TAATAGAT
1 TAACAGAT
121173370 CAGTGTTCCT
Statistics
Matches: 941, Mismatches: 65, Indels: 40
0.90 0.06 0.04
Matches are distributed among these distances:
80 36 0.04
83 2 0.00
84 664 0.71
85 1 0.00
88 238 0.25
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.23
Consensus pattern (84 bp):
TAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCG
GCGGAGAGCAGATCGAAGA
Found at i:121173051 original size:424 final size:421
Alignment explanation
Indices: 121172262--121173369 Score: 1715
Period size: 424 Copynumber: 2.6 Consensus size: 421
121172252 AACAAGTAAC
*
121172262 AGATTTGGCGTCTCTGTAGCAGCGGAGAGCAGATCGAAGATGATTTGGTATCTCTGTAACGGCGG
1 AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGTATCTCTGTAACGGCGG
121172327 AGAGCAGATTGAAGATAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGATGATTT
66 AGAGCAGATTGAAGATAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGATGATTT
*
121172392 GGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACATATTTGGCGTCTCTATAGCGGTAGAG
131 GGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACATATTTGGCGTCTCTATAGCGGTAGGG
121172457 AGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
196 AGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
* * *
121172522 CGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAG
261 CGTCTCTGTAGCGGCGGAGAGCAGATCGAAAATAACAGATTTGGCATCTCTGTAACGGCGGAGAG
* *
121172587 CAGATCGAAAATAACAGATTTGGTATCTCTGTAACGGCGGAGAGCAGATTGAAGATAACAGATTT
326 CAGATCGAAAATAACAGATTTGGCATCTCTGTAACGGCGGAGAGCAGATCGAAGAT----GATTT
*
121172652 GGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
387 GGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
*
121172687 -GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGTATCTCTGTAACGGCGG
1 AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGTATCTCTGTAACGGCGG
121172751 AGAGCAGATTGAAGATAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGATGATTT
66 AGAGCAGATTGAAGATAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGATGATTT
121172816 GGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACATATTTGGCGTCTCTATAGCGGTAGGG
131 GGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACATATTTGGCGTCTCTATAGCGGTAGGG
121172881 AGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
196 AGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
*
121172946 CGTCTCTGTAGCGGCGGAGAGCAGATCGAAAATAACAGATTTGGTATCTCTGTAACGGCGGAGAG
261 CGTCTCTGTAGCGGCGGAGAGCAGATCGAAAATAACAGATTTGGCATCTCTGTAACGGCGGAGAG
* * * * *
121173011 CAGATTGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCATATCGAAGATGATTTGGCA
326 CAGATCGAAAATAACAGATTTGGCATCTCTGTAACGGCGGAGAGCAGATCGAAGATGATTTGGCA
121173076 TCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
391 TCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
* * * * *
121173107 AACAGATTTGGCGTCTCTGTAGCGGCTGAGAGCAGATTGAAGATGATTTGGCATCTCTATAGCGG
1 ---AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGTATCTCTGTAACGG
* * **
121173172 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
63 CGGAGAGCAGATTGAAGATAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGAT--
* * * * * *
121173237 CAGATTTAGCGTCTCTGTAGCGGCTGAGAGCAGATTGAAGAT----GATTTGGCATCTCTATAGC
126 --GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACATATTTGGCGTCTCTATAGC
* * * *
121173298 GG-CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAAA
189 GGTAGG-GAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGA
*
121173362 TAATAGAT
249 TAACAGAT
121173370 CAGTGTTCCT
Statistics
Matches: 634, Mismatches: 36, Indels: 23
0.91 0.05 0.03
Matches are distributed among these distances:
420 39 0.06
423 2 0.00
424 514 0.81
428 79 0.12
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (421 bp):
AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGTATCTCTGTAACGGCGG
AGAGCAGATTGAAGATAACAGATTTGGCGTCTCTATAGCGGTAGAGAGCAGATCGAAGATGATTT
GGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACATATTTGGCGTCTCTATAGCGGTAGGG
AGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGG
CGTCTCTGTAGCGGCGGAGAGCAGATCGAAAATAACAGATTTGGCATCTCTGTAACGGCGGAGAG
CAGATCGAAAATAACAGATTTGGCATCTCTGTAACGGCGGAGAGCAGATCGAAGATGATTTGGCA
TCTCTGTAGCGGCGGAGAGCAGATCGAAGAT
Found at i:121173760 original size:9 final size:9
Alignment explanation
Indices: 121173748--121173782 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
121173738 GCCAAAAGAA
121173748 AAAAAAAAC
1 AAAAAAAAC
121173757 AAAAAACAAC
1 AAAAAA-AAC
121173767 AAAAAAAAC
1 AAAAAAAAC
121173776 AAAAAAA
1 AAAAAAA
121173783 GGGGCAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:121173760 original size:10 final size:10
Alignment explanation
Indices: 121173747--121173782 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
121173737 AGCCAAAAGA
121173747 AAAAAAAAAC
1 AAAAAAAAAC
*
121173757 AAAAAACAAC
1 AAAAAAAAAC
121173767 -AAAAAAAAC
1 AAAAAAAAAC
121173776 AAAAAAA
1 AAAAAAA
121173783 GGGGCAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:121174220 original size:13 final size:13
Alignment explanation
Indices: 121174202--121174226 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121174192 CCACCGTGCG
121174202 CGGTGGCCGGCGA
1 CGGTGGCCGGCGA
121174215 CGGTGGCCGGCG
1 CGGTGGCCGGCG
121174227 GCAGTGGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.32, G:0.56, T:0.08
Consensus pattern (13 bp):
CGGTGGCCGGCGA
Found at i:121174996 original size:16 final size:16
Alignment explanation
Indices: 121174971--121175006 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
121174961 TATTTTTAAC
*
121174971 ATATATATGTATATAT
1 ATATACATGTATATAT
*
121174987 ATATACATGTATGTAT
1 ATATACATGTATATAT
121175003 ATAT
1 ATAT
121175007 TTATGAAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (16 bp):
ATATACATGTATATAT
Found at i:121175105 original size:16 final size:17
Alignment explanation
Indices: 121175084--121175123 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
121175074 ATTTTAATAC
*
121175084 TATATTATGTAT-TTAT
1 TATATTATATATATTAT
121175100 TATATTATATATAGTTAT
1 TATATTATATATA-TTAT
121175118 TATATT
1 TATATT
121175124 TTTATGTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 11 0.52
18 10 0.48
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
TATATTATATATATTAT
Found at i:121175118 original size:29 final size:30
Alignment explanation
Indices: 121175060--121175134 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 30
121175050 TTCTAATGTG
*
121175060 TATGTA-TTATATATATTTTAATACTATAT
1 TATGTATTTATATATATTATAATACTATAT
*
121175089 TATGTATTTAT-TATATTATATATAGT-TAT
1 TATGTATTTATATATATTATA-ATACTATAT
* * *
121175118 TATATTTTTATGTATAT
1 TATGTATTTATATATAT
121175135 ATTTTTAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 26 0.67
30 13 0.33
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (30 bp):
TATGTATTTATATATATTATAATACTATAT
Found at i:121175348 original size:3 final size:3
Alignment explanation
Indices: 121175340--121175379 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
121175330 TCTACGTTGC
*
121175340 ATT ATT ATT ATT A-T ATT ATT ATT ATT ATT ATT ATT TTT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
121175380 CATTGTTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:121177000 original size:46 final size:46
Alignment explanation
Indices: 121176946--121177219 Score: 374
Period size: 46 Copynumber: 6.0 Consensus size: 46
121176936 GCTCTCTGAA
*
121176946 ATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
121176992 -TAGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACATGAT
1 AT-GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
121177038 ATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACTTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
121177084 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATC-TGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-CATGAT
*** * *
121177130 ATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
121177176 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
121177220 TCAAAGATAA
Statistics
Matches: 205, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
45 3 0.01
46 200 0.98
47 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:121177042 original size:25 final size:25
Alignment explanation
Indices: 121177014--121177089 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
121177004 AGACCATGGT
121177014 TGAAAGATACCATAGCAACATGATA
1 TGAAAGATACCATAGCAACATGATA
* * *
121177039 TGAAATG-T-GCA-AG-ACCATGGT-
1 TGAAA-GATACCATAGCAACATGATA
* *
121177060 TGAAAGATACCATGGCAACTTGATA
1 TGAAAGATACCATAGCAACATGATA
121177085 TGAAA
1 TGAAA
121177090 TGTGTAAGAC
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 6 0.16
22 8 0.22
23 3 0.08
24 7 0.19
25 11 0.30
26 1 0.03
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.22
Consensus pattern (25 bp):
TGAAAGATACCATAGCAACATGATA
Found at i:121177063 original size:21 final size:21
Alignment explanation
Indices: 121176994--121177064 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
121176984 AACATGATTA
*
121176994 GAAATGTGTAAGACCATGGTT
1 GAAATGTGCAAGACCATGGTT
* * *
121177015 GAAA-GATACCATAGCAACATGATAT
1 GAAATG-T-GCA-AG-ACCATGGT-T
121177040 GAAATGTGCAAGACCATGGTT
1 GAAATGTGCAAGACCATGGTT
121177061 GAAA
1 GAAA
121177065 GATACCATGG
Statistics
Matches: 37, Mismatches: 7, Indels: 12
0.66 0.12 0.21
Matches are distributed among these distances:
20 1 0.03
21 10 0.27
22 7 0.19
23 4 0.11
24 8 0.22
25 6 0.16
26 1 0.03
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.23
Consensus pattern (21 bp):
GAAATGTGCAAGACCATGGTT
Found at i:121182286 original size:21 final size:21
Alignment explanation
Indices: 121182227--121182287 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
121182217 GATTATATGA
* * *
121182227 ATTGGATTGAATATTGATTAT
1 ATTGAATTGATTATTGAATAT
121182248 ATTGAATTGATT-TATGAATAT
1 ATTGAATTGATTAT-TGAATAT
121182269 ATGTGAATTG-TTATTGAAT
1 AT-TGAATTGATTATTGAAT
121182288 TGAAATTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.03
21 25 0.74
22 8 0.24
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (21 bp):
ATTGAATTGATTATTGAATAT
Found at i:121182294 original size:6 final size:6
Alignment explanation
Indices: 121182281--121182332 Score: 72
Period size: 6 Copynumber: 8.8 Consensus size: 6
121182271 GTGAATTGTT
*
121182281 ATTG-A ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATT-AA AATGTAA
1 ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATTGAA ATTG-AA
121182328 ATTGA
1 ATTGA
121182333 TTGGAAAAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
5 8 0.19
6 29 0.69
7 5 0.12
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (6 bp):
ATTGAA
Found at i:121182675 original size:5 final size:5
Alignment explanation
Indices: 121182660--121182706 Score: 58
Period size: 5 Copynumber: 9.2 Consensus size: 5
121182650 AGTGGAAAAG
* * *
121182660 TGAATT TGAAT TGAAT TGAAT TGAAT GGAAT TGAAT GGAAT GGAAT T
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT T
121182707 ATGATTAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
5 33 0.89
6 4 0.11
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (5 bp):
TGAAT
Found at i:121182685 original size:15 final size:15
Alignment explanation
Indices: 121182660--121182706 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
121182650 AGTGGAAAAG
*
121182660 TGAATTTGAATTGAAT
1 TGAA-TTGAATGGAAT
121182676 TGAATTGAATGGAAT
1 TGAATTGAATGGAAT
*
121182691 TGAATGGAATGGAAT
1 TGAATTGAATGGAAT
121182706 T
1 T
121182707 ATGATTAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
15 25 0.86
16 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (15 bp):
TGAATTGAATGGAAT
Found at i:121183184 original size:45 final size:45
Alignment explanation
Indices: 121183121--121183309 Score: 297
Period size: 45 Copynumber: 4.2 Consensus size: 45
121183111 CCGCTACTAC
*
121183121 TACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGC
1 TACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGT
121183166 TACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGT
1 TACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGT
* * *
121183211 TACCGTTACCGATTCGGCACTTTGTGTGTTGAATGTTGTTACTGT
1 TACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGT
** * * *
121183256 TACCATTACCGATTCAGCACTTTGTGTGTTGAATACTGTTACTGT
1 TACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGT
121183301 TACTGTTAC
1 TACTGTTAC
121183310 TGTTCCGGAT
Statistics
Matches: 134, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 134 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGTTACTGT
Found at i:121183300 original size:6 final size:6
Alignment explanation
Indices: 121183289--121183313 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
121183279 GTGTGTTGAA
121183289 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
121183314 CCGGATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:121183510 original size:18 final size:18
Alignment explanation
Indices: 121183489--121183757 Score: 199
Period size: 18 Copynumber: 14.5 Consensus size: 18
121183479 TAACTGATTA
121183489 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
121183507 TTACTGGATAATTGACTG
1 TTACTGAATAATTGACTG
121183525 TTACTGAAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
121183543 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
121183561 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
*
121183579 TTACTGAATAATTGATTG
1 TTACTGAATAATTGACTG
*
121183597 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
121183615 CTACTGAATAACTT-AATAG
1 TTACTGAATAA-TTGACT-G
*
121183634 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
121183651 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
121183669 TTACTGGATAATCGATCAATTG
1 TTACTGAATAATTGA-C---TG
** *
121183691 ATCGATACTGAATAATTGGTTA
1 -T---TACTGAATAATTGACTG
* *
121183713 TTATTGAATAATTGATTG
1 TTACTGAATAATTGACTG
* *
121183731 TTACCGAATAACTGACTG
1 TTACTGAATAATTGACTG
121183749 TTACTGAAT
1 TTACTGAAT
121183758 TAATAATTGT
Statistics
Matches: 201, Mismatches: 30, Indels: 40
0.74 0.11 0.15
Matches are distributed among these distances:
17 19 0.09
18 149 0.74
19 17 0.08
21 1 0.00
22 3 0.01
23 1 0.00
26 11 0.05
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:121183603 original size:72 final size:72
Alignment explanation
Indices: 121183477--121183674 Score: 251
Period size: 72 Copynumber: 2.8 Consensus size: 72
121183467 AAATGTATAA
* * * *
121183477 AATAACTGATTATTACTGAATAATTGA-CTGTTACTGGATAATTGACTGTTACTGAAT-ATTAGA
1 AATAACTGAATATTACTGAATAATTGATC-ATTACTGAATAATTGACTGTTACTGAATGAAT-GA
*
121183540 CTGTTACTG
64 CTGCTACTG
* *
121183549 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAATTGATTGTCACTGAATGAATGACT
1 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAATTGACTGTTACTGAATGAATGACT
121183614 GCTACTG
66 GCTACTG
* *
121183621 AATAACTTAATAGTTACTGAAT-ATCTGAT-TTTACTGAATAATTGACTGTTACTG
1 AATAACTGAATA-TTACTGAATAAT-TGATCATTACTGAATAATTGACTGTTACTG
121183675 GATAATCGAT
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
72 95 0.86
73 16 0.14
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTGATCATTACTGAATAATTGACTGTTACTGAATGAATGACT
GCTACTG
Found at i:121186671 original size:44 final size:44
Alignment explanation
Indices: 121186592--121186707 Score: 162
Period size: 44 Copynumber: 2.6 Consensus size: 44
121186582 ATGCCTAAAA
* *
121186592 AAAAAATCAAGATGAAAACCCGAAAAGGGCATCTTGATTAACAC
1 AAAAGATCAAGATGAAAACCCGAAAGGGGCATCTTGATTAACAC
* *
121186636 AAAAGATCAAGATGAAAACCCGGAAGGGGCGTCTTGATTAACAC
1 AAAAGATCAAGATGAAAACCCGAAAGGGGCATCTTGATTAACAC
* *
121186680 AAAGGAT-TAGAATGAAAACCCGAAAGGG
1 AAAAGATCAAG-ATGAAAACCCGAAAGGG
121186708 CATTCTAATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
43 2 0.03
44 62 0.97
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.15
Consensus pattern (44 bp):
AAAAGATCAAGATGAAAACCCGAAAGGGGCATCTTGATTAACAC
Found at i:121187796 original size:85 final size:86
Alignment explanation
Indices: 121187576--121187989 Score: 575
Period size: 86 Copynumber: 4.8 Consensus size: 86
121187566 TGTATTTCAA
* * *
121187576 AAAAATTAACTCACATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
* * * *
121187641 TATTCTTGAATTTCTGTTCGTC
66 TGTTTTTCAATTTATGTTC-TC
* * *
121187663 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
*
121187727 CGTTTTTCAATTTATGTT-TC
66 TGTTTTTCAATTTATGTTCTC
*
121187747 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
* *
121187812 TGTTCTTCAATTTCTGTTCGTC
66 TGTTTTTCAATTTATGTTC-TC
* * **
121187834 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
**
121187898 CATTTTTCAATTTATGTT-TC
66 TGTTTTTCAATTTATGTTCTC
* * *
121187918 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTTAAGACATGCTGAGGTATTTTCAAATTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
121187983 TGTTTTT
66 TGTTTTT
121187990 ATCAAAAGTC
Statistics
Matches: 287, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
84 4 0.01
85 137 0.48
86 144 0.50
87 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
TGTTTTTCAATTTATGTTCTC
Found at i:121187822 original size:14 final size:14
Alignment explanation
Indices: 121187803--121187835 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
121187793 CTGAGGTATT
121187803 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
121187817 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
*
121187831 GTCAA
1 TTCAA
121187836 AATCAACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.09, T:0.52
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:121187986 original size:171 final size:171
Alignment explanation
Indices: 121187576--121187986 Score: 732
Period size: 171 Copynumber: 2.4 Consensus size: 171
121187566 TGTATTTCAA
* * * *
121187576 AAAAATTAACTCACATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTCAAGACATGCTGAGGTATTTTCAATTTC
* *
121187641 TATTCTTGAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
66 TGTTCTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
121187706 CGCTGAGGTATTTTCAATTTCCGTTTTTCAATTTATGTTTC
131 CACTGAGGTATTTTCAATTTCCATTTTTCAATTTATGTTTC
121187747 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTCAAGACATGCTGAGGTATTTTCAATTTC
121187812 TGTTCTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
66 TGTTCTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
121187877 CACTGAGGTATTTTCAATTTCCATTTTTCAATTTATGTTTC
131 CACTGAGGTATTTTCAATTTCCATTTTTCAATTTATGTTTC
* *
121187918 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTTAAGACATGCTGAGGTATTTTCAAATTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTCAAGACATGCTGAGGTATTTTCAATTTC
121187983 TGTT
66 TGTT
121187987 TTTATCAAAA
Statistics
Matches: 230, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
171 230 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (171 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTTCAAGACATGCTGAGGTATTTTCAATTTC
TGTTCTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CACTGAGGTATTTTCAATTTCCATTTTTCAATTTATGTTTC
Found at i:121188197 original size:21 final size:21
Alignment explanation
Indices: 121188152--121188203 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
121188142 GCAGAGCCCT
* **
121188152 GAAGTTACAGTGGAGCTGATC
1 GAAGTTGCAGTGGAGCACATC
*
121188173 GAAGTTGCAGTGGAGCACATG
1 GAAGTTGCAGTGGAGCACATC
121188194 GAAGTTGCAG
1 GAAGTTGCAG
121188204 ATCTTATCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.13, G:0.37, T:0.21
Consensus pattern (21 bp):
GAAGTTGCAGTGGAGCACATC
Found at i:121190079 original size:12 final size:12
Alignment explanation
Indices: 121190062--121190086 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
121190052 TATGTTTTTA
121190062 ATATATTTATGT
1 ATATATTTATGT
121190074 ATATATTTATGT
1 ATATATTTATGT
121190086 A
1 A
121190087 GCATTATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (12 bp):
ATATATTTATGT
Found at i:121190133 original size:11 final size:11
Alignment explanation
Indices: 121190121--121190270 Score: 66
Period size: 11 Copynumber: 13.7 Consensus size: 11
121190111 TCCTAATATG
*
121190121 TATATATTATG
1 TATATATTATA
* *
121190132 TAAATATTTTAA
1 TATATATTAT-A
121190144 TATTATATTATA
1 TA-TATATTATA
*
121190156 TATAT-TTTTCA
1 TATATATTAT-A
*
121190167 TATATATTATG
1 TATATATTATA
*
121190178 TATATATGT-TT
1 TATATAT-TATA
121190189 TA-ATATTATA
1 TATATATTATA
*
121190199 T-TTTA-TATA
1 TATATATTATA
*
121190208 TAT-TATTATG
1 TATATATTATA
*
121190218 TATATATTTTA
1 TATATATTATA
121190229 -ATATTATTAGT-
1 TATA-TATTA-TA
*
121190240 TATATATCT-TT
1 TATATAT-TATA
121190251 TATACTATTATA
1 TATA-TATTATA
*
121190263 TGTATATT
1 TATATATT
121190271 TCTAATACTA
Statistics
Matches: 105, Mismatches: 17, Indels: 34
0.67 0.11 0.22
Matches are distributed among these distances:
9 8 0.08
10 22 0.21
11 48 0.46
12 21 0.20
13 6 0.06
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (11 bp):
TATATATTATA
Found at i:121190152 original size:24 final size:23
Alignment explanation
Indices: 121190123--121190200 Score: 86
Period size: 24 Copynumber: 3.3 Consensus size: 23
121190113 CTAATATGTA
121190123 TATATTATGTAAATATTTTAATAT
1 TATATTATGTAAAT-TTTTAATAT
* * *
121190147 TATATTATATATATTTTTCATA-
1 TATATTATGTAAATTTTTAATAT
121190169 TATATTATGTATATATGTTTTAATAT
1 TATATTATGTA-A-AT-TTTTAATAT
121190195 TATATT
1 TATATT
121190201 TTATATATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.23
23 7 0.16
24 14 0.32
25 7 0.16
26 6 0.14
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (23 bp):
TATATTATGTAAATTTTTAATAT
Found at i:121190173 original size:48 final size:48
Alignment explanation
Indices: 121190121--121190222 Score: 138
Period size: 48 Copynumber: 2.1 Consensus size: 48
121190111 TCCTAATATG
*
121190121 TATATATTATGTA-A-ATATTTTAATATTATA-TTATATATATTTTTCA
1 TATATATTATGTATATATATTTTAATATTATATTTATATATATTATT-A
*
121190167 TATATATTATGTATATATGTTTTAATATTATATTTTATATATATTATTA
1 TATATATTATGTATATATATTTTAATATTATA-TTTATATATATTATTA
*
121190216 TGTATAT
1 TATATAT
121190223 ATTTTAATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
46 13 0.27
47 1 0.02
48 15 0.31
49 7 0.14
50 13 0.27
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (48 bp):
TATATATTATGTATATATATTTTAATATTATATTTATATATATTATTA
Found at i:121190205 original size:24 final size:23
Alignment explanation
Indices: 121190138--121190233 Score: 90
Period size: 24 Copynumber: 4.0 Consensus size: 23
121190128 TATGTAAATA
*
121190138 TTTTAATATTATATTATATATAT
1 TTTTAATATTATATTTTATATAT
*
121190161 TTTTCATA-TATATTATGTATATAT
1 TTTTAATATTATATT-T-TATATAT
121190185 GTTTTAATATTATATTTTATATAT
1 -TTTTAATATTATATTTTATATAT
*
121190209 ATTATT-ATGTATATATTTTA-ATAT
1 -TT-TTAATAT-TATATTTTATATAT
121190233 T
1 T
121190234 ATTAGTTATA
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
22 6 0.10
23 8 0.13
24 23 0.37
25 19 0.31
26 6 0.10
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.60
Consensus pattern (23 bp):
TTTTAATATTATATTTTATATAT
Found at i:121190236 original size:25 final size:24
Alignment explanation
Indices: 121190195--121190269 Score: 84
Period size: 23 Copynumber: 3.1 Consensus size: 24
121190185 GTTTTAATAT
121190195 TATATTTTATATATATTATTATGTA
1 TATATTTTATAT-TATTATTATGTA
121190220 TATATTTTAATATTATTAGTTA--TA
1 TATATTTT-ATATTATTA-TTATGTA
* *
121190244 TATCTTTTATACTATTA-TATGTA
1 TATATTTTATATTATTATTATGTA
121190267 TAT
1 TAT
121190270 TTCTAATACT
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
21 2 0.05
23 13 0.30
24 9 0.20
25 13 0.30
26 7 0.16
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.59
Consensus pattern (24 bp):
TATATTTTATATTATTATTATGTA
Found at i:121190243 original size:38 final size:38
Alignment explanation
Indices: 121190166--121190246 Score: 112
Period size: 38 Copynumber: 2.1 Consensus size: 38
121190156 TATATTTTTC
*
121190166 ATATATATTATGTATATATGTTTTAATATTATATTTTAT
1 ATATATATTATGTATATA-GTTTTAATATTATATGTTAT
121190205 ATATATTATTATGTATATA-TTTTAATATTAT-TAGTTAT
1 ATATA-TATTATGTATATAGTTTTAATATTATAT-GTTAT
121190243 ATAT
1 ATAT
121190247 CTTTTATACT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
37 1 0.03
38 20 0.51
39 5 0.13
40 13 0.33
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (38 bp):
ATATATATTATGTATATAGTTTTAATATTATATGTTAT
Found at i:121190288 original size:21 final size:23
Alignment explanation
Indices: 121190191--121190314 Score: 82
Period size: 23 Copynumber: 5.4 Consensus size: 23
121190181 ATATGTTTTA
121190191 ATAT-TATATTT-TATATA-TATT
1 ATATGTATATTTCTA-ATACTATT
* *
121190212 ATTATGTATATATTTTAATATTATT
1 A-TATGTATAT-TTCTAATACTATT
* *
121190237 AGT-TATATATCTT-TTATACTATT
1 A-TATGTATAT-TTCTAATACTATT
121190260 ATATGTATATTTCTAATACTA-T
1 ATATGTATATTTCTAATACTATT
* *
121190282 A-ATGTATATTTCTAACACCATT
1 ATATGTATATTTCTAATACTATT
*
121190304 ATTATTTATAT
1 A-TATGTATAT
121190315 ATATATATGT
Statistics
Matches: 83, Mismatches: 10, Indels: 17
0.75 0.09 0.15
Matches are distributed among these distances:
21 18 0.22
22 10 0.12
23 27 0.33
24 20 0.24
25 8 0.10
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (23 bp):
ATATGTATATTTCTAATACTATT
Found at i:121190403 original size:11 final size:11
Alignment explanation
Indices: 121190387--121190421 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
121190377 AAATATATGA
121190387 ATATATTGTAT
1 ATATATTGTAT
121190398 ATATATTGTAT
1 ATATATTGTAT
*
121190409 ATATATTATAT
1 ATATATTGTAT
121190420 AT
1 AT
121190422 TTTTAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (11 bp):
ATATATTGTAT
Found at i:121190534 original size:31 final size:29
Alignment explanation
Indices: 121190499--121190558 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
121190489 CATATTCTTG
* *
121190499 AATACTATGTTATATATATATATATATATAT
1 AATACCATATTATATATATAT-TAT-TATAT
*
121190530 AATACCATATTATGTATATATTATTATAT
1 AATACCATATTATATATATATTATTATAT
121190559 CTATTTTATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 5 0.19
30 3 0.12
31 18 0.69
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.48
Consensus pattern (29 bp):
AATACCATATTATATATATATTATTATAT
Found at i:121190953 original size:25 final size:25
Alignment explanation
Indices: 121190907--121190955 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
121190897 ATATTTAATA
* * *
121190907 ACTATATTATGTGTGTATTTTTAAC
1 ACTATATTATGTATATACTTTTAAC
*
121190932 ACTATTTTATGTATATACTTTTAA
1 ACTATATTATGTATATACTTTTAA
121190956 TATTATTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (25 bp):
ACTATATTATGTATATACTTTTAAC
Found at i:121191084 original size:15 final size:15
Alignment explanation
Indices: 121191064--121191103 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
121191054 ATGTTCATTT
121191064 TATATATATTATCTA
1 TATATATATTATCTA
*
121191079 TATATATATTATGTA
1 TATATATATTATCTA
121191094 TATATATATT
1 TATATATATT
121191104 TAGTATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (15 bp):
TATATATATTATCTA
Found at i:121191109 original size:15 final size:15
Alignment explanation
Indices: 121191064--121191109 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 15
121191054 ATGTTCATTT
*
121191064 TATATATA-TTA-TC
1 TATATATATTTAGTA
121191077 TATATATATATTATGTA
1 TATATATAT-TTA-GTA
121191094 TATATATATTTAGTA
1 TATATATATTTAGTA
121191109 T
1 T
121191110 TATTATGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 8 0.29
15 7 0.25
16 3 0.11
17 10 0.36
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.54
Consensus pattern (15 bp):
TATATATATTTAGTA
Found at i:121195026 original size:38 final size:38
Alignment explanation
Indices: 121194976--121195055 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
121194966 GTACAAAACT
* * **
121194976 CATATCTGGCACACGAAGTGCATCCACGCGTATAAGCG
1 CATATCTAGCACACAAAGTGCATCCACGCACATAAGCG
* *
121195014 CATATCTAGCACACAAAGTGTATCTACGCACATAAGCG
1 CATATCTAGCACACAAAGTGCATCCACGCACATAAGCG
121195052 CATA
1 CATA
121195056 ATCTCGTACT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.20
Consensus pattern (38 bp):
CATATCTAGCACACAAAGTGCATCCACGCACATAAGCG
Found at i:121195802 original size:41 final size:41
Alignment explanation
Indices: 121195754--121195834 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
121195744 TTATACTAAG
*
121195754 CTTAATTTCTAACAATTTAACACCAAAATTATTCAATTCCC
1 CTTAATTTCTAACAAATTAACACCAAAATTATTCAATTCCC
121195795 CTTAATTTCTAACAAATTAACACCAAAATTATTCAATTCC
1 CTTAATTTCTAACAAATTAACACCAAAATTATTCAATTCC
121195835 TCTGCCATGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.41, C:0.23, G:0.00, T:0.36
Consensus pattern (41 bp):
CTTAATTTCTAACAAATTAACACCAAAATTATTCAATTCCC
Found at i:121198497 original size:30 final size:30
Alignment explanation
Indices: 121198463--121198521 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
121198453 GGGTAGGATC
* * *
121198463 TGAATTTGTGTTTGCATTTGCATCTGTAAT
1 TGAATTTGTATCTGCATTAGCATCTGTAAT
121198493 TGAATTTGTATCTGCATTAGCATCTGTAA
1 TGAATTTGTATCTGCATTAGCATCTGTAA
121198522 CTGATATGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.46
Consensus pattern (30 bp):
TGAATTTGTATCTGCATTAGCATCTGTAAT
Found at i:121198912 original size:21 final size:20
Alignment explanation
Indices: 121198873--121198912 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
121198863 AGAAAGTGAT
*
121198873 TAAGTGATTTTATTATGAAA
1 TAAGTGATTTTAGTATGAAA
*
121198893 TAAGTGTTTTTGAGTATGAA
1 TAAGTGATTTT-AGTATGAA
121198913 GTTTTCTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
TAAGTGATTTTAGTATGAAA
Found at i:121203187 original size:18 final size:18
Alignment explanation
Indices: 121203166--121203201 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
121203156 TATGATTTTT
121203166 CATATAGTATACAATGAA
1 CATATAGTATACAATGAA
121203184 CATATAGTATACAATGAA
1 CATATAGTATACAATGAA
121203202 TTATGTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (18 bp):
CATATAGTATACAATGAA
Found at i:121204611 original size:29 final size:27
Alignment explanation
Indices: 121204544--121204611 Score: 73
Period size: 31 Copynumber: 2.4 Consensus size: 27
121204534 AAAGTTTTAT
* *
121204544 ATGTATAATTACACTGAATCAAAATTC
1 ATGTATAATTACACTAAATCAAAATTA
*
121204571 ATGTATTAAATTACATATTAAATCAAAATTA
1 ATGTA-T-AATTAC--ACTAAATCAAAATTA
121204602 ATGTATAATT
1 ATGTATAATT
121204612 TTAAAATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 5 0.15
28 1 0.03
29 10 0.29
30 1 0.03
31 17 0.50
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (27 bp):
ATGTATAATTACACTAAATCAAAATTA
Found at i:121206538 original size:25 final size:25
Alignment explanation
Indices: 121206510--121206558 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
121206500 GGATTAGTTG
*
121206510 AAATTA-TTTTTTTATTAAATAAATT
1 AAATTACTTTTTGTATT-AATAAATT
121206535 AAATTAGCTTTTTGTATTAATAAA
1 AAATTA-CTTTTTGTATTAATAAA
121206559 AATAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 6 0.29
26 6 0.29
27 9 0.43
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (25 bp):
AAATTACTTTTTGTATTAATAAATT
Found at i:121207938 original size:14 final size:13
Alignment explanation
Indices: 121207919--121207961 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
121207909 CAGTTATAGA
121207919 TTTAATATTTATAT
1 TTTAAT-TTTATAT
*
121207933 TTTAATTTAATAT
1 TTTAATTTTATAT
*
121207946 TTTTATTTTAATAT
1 TTTAATTTT-ATAT
121207960 TT
1 TT
121207962 GCATTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTAATTTTATAT
Found at i:121207942 original size:19 final size:19
Alignment explanation
Indices: 121207918--121207957 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
121207908 TCAGTTATAG
121207918 ATTTAATATTTATATTTTA
1 ATTTAATATTTATATTTTA
*
121207937 ATTTAATATTTTTATTTTA
1 ATTTAATATTTATATTTTA
121207956 AT
1 AT
121207958 ATTTGCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTTAATATTTATATTTTA
Found at i:121208786 original size:6 final size:6
Alignment explanation
Indices: 121208776--121208840 Score: 121
Period size: 6 Copynumber: 10.8 Consensus size: 6
121208766 GAGGGTTACT
*
121208776 TTTTGT TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
121208824 TTTTGA TTTTGA TTTTG
1 TTTTGA TTTTGA TTTTG
121208841 CCAAGAAAGA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69
Consensus pattern (6 bp):
TTTTGA
Found at i:121210155 original size:23 final size:23
Alignment explanation
Indices: 121210094--121210152 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
121210084 TGGTAATATA
*
121210094 TATAA-TAAATTAATAACAAAAT
1 TATAATTAAATTAATAAAAAAAT
*
121210116 TATATTTAAATTAATAAAAAAAT
1 TATAATTAAATTAATAAAAAAAT
121210139 TATAATTATAATTA
1 TATAATTA-AATTA
121210153 TAATTATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 4 0.12
23 23 0.72
24 5 0.16
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
TATAATTAAATTAATAAAAAAAT
Found at i:121210180 original size:6 final size:6
Alignment explanation
Indices: 121210136--121210163 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
121210126 TTAATAAAAA
121210136 AATTAT AATTAT AATTAT AATTAT AATT
1 AATTAT AATTAT AATTAT AATTAT AATT
121210164 GTGGTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
AATTAT
Found at i:121210265 original size:13 final size:13
Alignment explanation
Indices: 121210249--121210273 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121210239 ATACTTAATC
121210249 ATAATATAGTATA
1 ATAATATAGTATA
121210262 ATAATATAGTAT
1 ATAATATAGTAT
121210274 TGTATTAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
ATAATATAGTATA
Found at i:121210336 original size:20 final size:21
Alignment explanation
Indices: 121210306--121210356 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
121210296 ATATCTATAC
* *
121210306 AAAAAAATAAATTAAA-TAGT
1 AAAAGAATAAATGAAAGTAGT
* *
121210326 ACAAGAATAAATGAAAGTGGT
1 AAAAGAATAAATGAAAGTAGT
121210347 AAAAGAATAA
1 AAAAGAATAA
121210357 TTAGTCTTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.65, C:0.02, G:0.14, T:0.20
Consensus pattern (21 bp):
AAAAGAATAAATGAAAGTAGT
Found at i:121210483 original size:18 final size:18
Alignment explanation
Indices: 121210456--121210493 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
121210446 TAATGCTAAG
*
121210456 AAGTATTTTTGAGATAAA
1 AAGTACTTTTGAGATAAA
121210474 AAGTACTTTTGAGATAAA
1 AAGTACTTTTGAGATAAA
121210492 AA
1 AA
121210494 AAAAATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.16, T:0.34
Consensus pattern (18 bp):
AAGTACTTTTGAGATAAA
Found at i:121217651 original size:18 final size:19
Alignment explanation
Indices: 121217621--121217657 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
121217611 GTCGTTTCAG
121217621 TGTTTGTGTTTG-TGTTTT
1 TGTTTGTGTTTGTTGTTTT
121217639 TGTTTGT-TGTTGTTGTTTT
1 TGTTTGTGT-TTGTTGTTTT
121217658 AAGAGTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.06
18 10 0.59
19 6 0.35
ACGTcount: A:0.00, C:0.00, G:0.27, T:0.73
Consensus pattern (19 bp):
TGTTTGTGTTTGTTGTTTT
Found at i:121217680 original size:14 final size:14
Alignment explanation
Indices: 121217651--121217679 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
121217641 TTTGTTGTTG
121217651 TTGTTTTAAGAGTT
1 TTGTTTTAAGAGTT
121217665 TTGTTTT-AGAGTT
1 TTGTTTTAAGAGTT
121217678 TT
1 TT
121217680 TTCGATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (14 bp):
TTGTTTTAAGAGTT
Found at i:121217843 original size:26 final size:26
Alignment explanation
Indices: 121217791--121217843 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
121217781 CAACAGCAAC
* * ** *
121217791 AACTAATAATATTATCAATTTAGATA
1 AACTAATAACATTATAAAAATAAATA
121217817 AACTAATAACATTATAAAAATAAATA
1 AACTAATAACATTATAAAAATAAATA
121217843 A
1 A
121217844 TTAAATGATG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (26 bp):
AACTAATAACATTATAAAAATAAATA
Found at i:121224196 original size:21 final size:21
Alignment explanation
Indices: 121224178--121224330 Score: 261
Period size: 21 Copynumber: 7.3 Consensus size: 21
121224168 GGTTCCTTGA
*
121224178 CTTCTTTTCCACTGTCCTTTT
1 CTTCTTTTCCAATGTCCTTTT
*
121224199 CTTCTTTCCCAATGTCCTTTT
1 CTTCTTTTCCAATGTCCTTTT
*
121224220 CTTCTTTTCCAACGTCCTTTT
1 CTTCTTTTCCAATGTCCTTTT
121224241 CTTCTTTTCCAATGTCCTTTT
1 CTTCTTTTCCAATGTCCTTTT
121224262 CTTCTTTTCCAATGTCCTTTT
1 CTTCTTTTCCAATGTCCTTTT
*
121224283 CTTCTTTTCCAATGTCCTCTT
1 CTTCTTTTCCAATGTCCTTTT
*
121224304 CTTCTTTTCCACTGTCCTTTT
1 CTTCTTTTCCAATGTCCTTTT
121224325 CTTCTT
1 CTTCTT
121224331 CTTCTGTAGC
Statistics
Matches: 124, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 124 1.00
ACGTcount: A:0.08, C:0.32, G:0.05, T:0.56
Consensus pattern (21 bp):
CTTCTTTTCCAATGTCCTTTT
Found at i:121241001 original size:38 final size:38
Alignment explanation
Indices: 121240950--121241028 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
121240940 AATTCTCAAA
121240950 AGTCAACTTATCATGATTGCTTCTCTAATGCCTTTTAG
1 AGTCAACTTATCATGATTGCTTCTCTAATGCCTTTTAG
*
121240988 AGTCAACTTATCATGCTTGCTTCTCTAATGCCTTTTAG
1 AGTCAACTTATCATGATTGCTTCTCTAATGCCTTTTAG
121241026 AGT
1 AGT
121241029 TTGAACAATC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.42
Consensus pattern (38 bp):
AGTCAACTTATCATGATTGCTTCTCTAATGCCTTTTAG
Found at i:121243804 original size:17 final size:17
Alignment explanation
Indices: 121243764--121243807 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
121243754 AACTTTTACA
*
121243764 ACACTTAGAAAATTTTC
1 ACACTTTGAAAATTTTC
121243781 ACACTTTGAAAATTTTC
1 ACACTTTGAAAATTTTC
121243798 ACACTTTGAA
1 ACACTTTGAA
121243808 GAGTCATACG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (17 bp):
ACACTTTGAAAATTTTC
Found at i:121244537 original size:42 final size:42
Alignment explanation
Indices: 121244474--121244637 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
121244464 CTTCGGTTTC
** *
121244474 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-A
* *
121244517 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
*
121244558 TCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATA
121244607 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
121244638 GAATCACATA
Statistics
Matches: 104, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.02
42 62 0.60
43 1 0.01
45 2 0.02
48 1 0.01
49 36 0.35
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
Found at i:121244618 original size:49 final size:49
Alignment explanation
Indices: 121244544--121244727 Score: 191
Period size: 49 Copynumber: 3.8 Consensus size: 49
121244534 TATGGTCTTA
* * *
121244544 CACATATTCATATATCGATGTCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
*
121244594 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
1 CACATATCACATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
* * * *
121244642 CACATATCTCA-CT-GATGCCATATCCCAGATATGGTCTTATACAGT-A-
1 CACATATCACATATCGATGCCATAGCCCAGATATGGTCTTACAC-GTAAT
* * * * *
121244688 -GCATATCTCACACCGATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGATATGGTCTTA
121244728 TACAGAAATC
Statistics
Matches: 120, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
45 9 0.08
46 26 0.22
47 29 0.24
48 13 0.11
49 37 0.31
50 6 0.05
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAGCCCAGATATGGTCTTACACGTAAT
Found at i:121244676 original size:46 final size:46
Alignment explanation
Indices: 121244518--121244727 Score: 159
Period size: 49 Copynumber: 4.6 Consensus size: 46
121244508 TTCACATAAT
* * * *
121244518 GATGCCATAGCCCAGCTATGGTCTTACAC-AT---AT-TCATATATC
1 GATGCCATATCCCAGATATGGTCTTACACAATAGCATATC-TACACC
* * * *
121244560 GATGTCATAGCCCAGCTATGGTCTTACACGTAATCA-CATATC-ACATATC
1 GATGCCATATCCCAGATATGGTCTTACAC--AAT-AGCATATCTAC--ACC
* * *
121244609 GATGCCATAGCCCAGCTATGGTCTTACACGAATCA-CATATCT-CACT
1 GATGCCATATCCCAGATATGGTCTTACAC-AAT-AGCATATCTACACC
* *
121244655 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATCTCACACC
1 GATGCCATATCCCAGATATGGTCTTACACAATAGCATATCT-ACACC
121244702 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATATCCCAGATATGGTCTTA
121244728 TACAGAAATC
Statistics
Matches: 144, Mismatches: 11, Indels: 21
0.82 0.06 0.12
Matches are distributed among these distances:
42 28 0.19
44 1 0.01
45 11 0.08
46 27 0.19
47 30 0.21
48 14 0.10
49 33 0.23
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTACACAATAGCATATCTACACC
Found at i:121244715 original size:47 final size:45
Alignment explanation
Indices: 121244608--121244732 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 45
121244598 TATCACATAT
* * * *
121244608 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-AGTCACATATCTCAC
*
121244654 TGATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATCTCACAC
1 CGATGCCATATCCCAGATATGGTCTTATACAGTCA-CATATCT--CAC
121244701 CGATGCCATATCCCAGATATGGTCTTATACAG
1 CGATGCCATATCCCAGATATGGTCTTATACAG
121244733 AAATCACTTG
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
44 1 0.01
45 9 0.13
46 26 0.37
47 34 0.49
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (45 bp):
CGATGCCATATCCCAGATATGGTCTTATACAGTCACATATCTCAC
Found at i:121244784 original size:31 final size:31
Alignment explanation
Indices: 121244749--121244866 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
121244739 CTTGTCACTT
*
121244749 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
121244780 GTAGCCGAAGCTACCATTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
121244811 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
121244842 GTAGCCAAAACTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
121244867 TGTCATTTGT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 78 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:121244940 original size:50 final size:50
Alignment explanation
Indices: 121244873--121244968 Score: 183
Period size: 50 Copynumber: 1.9 Consensus size: 50
121244863 CACTTGTCAT
121244873 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTAC
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTAC
*
121244923 TTGTCCTTGATTAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
121244969 GTTGCCATAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (50 bp):
TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTTAC
Found at i:121246863 original size:51 final size:51
Alignment explanation
Indices: 121246803--121246965 Score: 143
Period size: 51 Copynumber: 3.2 Consensus size: 51
121246793 ATTCTATTTC
*
121246803 ATCATAAACTTACAGCACTCAACCATGGTGGCTTTCAATTTCATCCATGAA
1 ATCAAAAACTTACAGCACTCAACCATGGTGGCTTTCAATTTCATCCATGAA
* * * * ***** * ***
121246854 ATCAAAAAC-TA-ATCTCATAAACAAATTAAAACTTT-AATTTCATTCTATTTC
1 ATCAAAAACTTACAGCAC-TCAAC-CATGGTGGCTTTCAATTTCA-TCCATGAA
*
121246905 ATCATAAACTTACAGCACTCAACCATGGTGGCTTTCAATTTCATCCATGAA
1 ATCAAAAACTTACAGCACTCAACCATGGTGGCTTTCAATTTCATCCATGAA
121246956 ATCAAAAACT
1 ATCAAAAACT
121246966 AATGAATTTA
Statistics
Matches: 77, Mismatches: 29, Indels: 12
0.65 0.25 0.10
Matches are distributed among these distances:
49 3 0.04
50 13 0.17
51 45 0.58
52 13 0.17
53 3 0.04
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.31
Consensus pattern (51 bp):
ATCAAAAACTTACAGCACTCAACCATGGTGGCTTTCAATTTCATCCATGAA
Found at i:121246903 original size:102 final size:102
Alignment explanation
Indices: 121246776--121246968 Score: 377
Period size: 102 Copynumber: 1.9 Consensus size: 102
121246766 ATCAATTTCT
*
121246776 ATTAAAGCTTTAATTTCATTCTATTTCATCATAAACTTACAGCACTCAACCATGGTGGCTTTCAA
1 ATTAAAACTTTAATTTCATTCTATTTCATCATAAACTTACAGCACTCAACCATGGTGGCTTTCAA
121246841 TTTCATCCATGAAATCAAAAACTAATCTCATAAACAA
66 TTTCATCCATGAAATCAAAAACTAATCTCATAAACAA
121246878 ATTAAAACTTTAATTTCATTCTATTTCATCATAAACTTACAGCACTCAACCATGGTGGCTTTCAA
1 ATTAAAACTTTAATTTCATTCTATTTCATCATAAACTTACAGCACTCAACCATGGTGGCTTTCAA
121246943 TTTCATCCATGAAATCAAAAACTAAT
66 TTTCATCCATGAAATCAAAAACTAAT
121246969 GAATTTAATA
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 90 1.00
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.34
Consensus pattern (102 bp):
ATTAAAACTTTAATTTCATTCTATTTCATCATAAACTTACAGCACTCAACCATGGTGGCTTTCAA
TTTCATCCATGAAATCAAAAACTAATCTCATAAACAA
Found at i:121257434 original size:237 final size:237
Alignment explanation
Indices: 121257019--121257491 Score: 937
Period size: 237 Copynumber: 2.0 Consensus size: 237
121257009 AATTCGTTTC
121257019 GATCGAGTTACGACGTCCGAAAGCCTCGTATGAACCTTAGGAATAGTTAGGATACATATGTCATG
1 GATCGAGTTACGACGTCCGAAAGCCTCGTATGAACCTTAGGAATAGTTAGGATACATATGTCATG
121257084 ACATAAGATTCCAATATATGTGTTCGAGTATGACCATGACATCGATATGTGACTCCGATATAGGT
66 ACATAAGATTCCAATATATGTGTTCGAGTATGACCATGACATCGATATGTGACTCCGATATAGGT
*
121257149 GTGCGAGTAAGACCCTGTCTAGGACAGTGGCATCGATATGTGGCTACATTTAAGACCACATCTGG
131 GTGCGAGTAAGACCCTGTCTAGGACAGTGACATCGATATGTGGCTACATTTAAGACCACATCTGG
121257214 GACGTTGGCATTGTACGATATGTGTGAATTATCTGAGTGTCG
196 GACGTTGGCATTGTACGATATGTGTGAATTATCTGAGTGTCG
121257256 GATCGAGTTACGACGTCCGAAAGCCTCGTATGAACCTTAGGAATAGTTAGGATACATATGTCATG
1 GATCGAGTTACGACGTCCGAAAGCCTCGTATGAACCTTAGGAATAGTTAGGATACATATGTCATG
121257321 ACATAAGATTCCAATATATGTGTTCGAGTATGACCATGACATCGATATGTGACTCCGATATAGGT
66 ACATAAGATTCCAATATATGTGTTCGAGTATGACCATGACATCGATATGTGACTCCGATATAGGT
121257386 GTGCGAGTAAGACCCTGTCTAGGACAGTGACATCGATATGTGGCTACATTTAAGACCACATCTGG
131 GTGCGAGTAAGACCCTGTCTAGGACAGTGACATCGATATGTGGCTACATTTAAGACCACATCTGG
121257451 GACGTTGGCATTGTACGATATGTGTGAATTATCTGAGTGTC
196 GACGTTGGCATTGTACGATATGTGTGAATTATCTGAGTGTC
121257492 TTATCCAATT
Statistics
Matches: 235, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
237 235 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (237 bp):
GATCGAGTTACGACGTCCGAAAGCCTCGTATGAACCTTAGGAATAGTTAGGATACATATGTCATG
ACATAAGATTCCAATATATGTGTTCGAGTATGACCATGACATCGATATGTGACTCCGATATAGGT
GTGCGAGTAAGACCCTGTCTAGGACAGTGACATCGATATGTGGCTACATTTAAGACCACATCTGG
GACGTTGGCATTGTACGATATGTGTGAATTATCTGAGTGTCG
Found at i:121259289 original size:2 final size:2
Alignment explanation
Indices: 121259282--121259306 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
121259272 AGTCTTATGT
121259282 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
121259307 GAACATGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121261365 original size:93 final size:93
Alignment explanation
Indices: 121261201--121261380 Score: 245
Period size: 93 Copynumber: 1.9 Consensus size: 93
121261191 TGCAATAAAC
* * * *
121261201 AGGAAGCGCATTTGGAGGAGGACATGATTTGCCATAAAGAGAGGTATGCCCTGTAACGTTACCAC
1 AGGAAGCACATTTGGAGGAGGACATGATTTGCCATAAACAGAGGTATACCCTGTAACGTTACAAC
*
121261266 TGATGACTGGTGCAGACGAATGATCAGT
66 TGATGACTGGTGCAGAAGAATGATCAGT
* * * * **
121261294 AGGAAGCACATTTGGAGGAGGACATGATTTTCCATGAACAGGGGTATACCCTTTCGCGTTACAAC
1 AGGAAGCACATTTGGAGGAGGACATGATTTGCCATAAACAGAGGTATACCCTGTAACGTTACAA-
121261359 CT-ATGACTGGTGCAGAAGAATG
65 CTGATGACTGGTGCAGAAGAATG
121261381 GTCGGCAGGA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
93 73 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (93 bp):
AGGAAGCACATTTGGAGGAGGACATGATTTGCCATAAACAGAGGTATACCCTGTAACGTTACAAC
TGATGACTGGTGCAGAAGAATGATCAGT
Found at i:121262728 original size:2 final size:2
Alignment explanation
Indices: 121262721--121262766 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
121262711 GAGCCTTGCA
121262721 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
121262763 TC TC
1 TC TC
121262767 ACTTCTGTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:121263525 original size:22 final size:23
Alignment explanation
Indices: 121263497--121263557 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
121263487 AATTATAATA
121263497 AAAAATTTCA-AAAAATAAAAAT
1 AAAAATTTCAGAAAAATAAAAAT
**
121263519 AAAAATTTCAGTAAATTTAAAAAT
1 AAAAATTTCAG-AAAAATAAAAAT
*
121263543 GAAAATTTCTAGAAA
1 AAAAATTTC-AGAAA
121263558 TTGGGGGTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 10 0.30
24 21 0.64
25 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (23 bp):
AAAAATTTCAGAAAAATAAAAAT
Found at i:121263539 original size:24 final size:24
Alignment explanation
Indices: 121263512--121263559 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
121263502 TTTCAAAAAA
121263512 TAAAAATAAAAATTTC-AGTAAATT
1 TAAAAATAAAAATTTCTAG-AAATT
*
121263536 TAAAAATGAAAATTTCTAGAAATT
1 TAAAAATAAAAATTTCTAGAAATT
121263560 GGGGGTGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (24 bp):
TAAAAATAAAAATTTCTAGAAATT
Found at i:121264250 original size:18 final size:18
Alignment explanation
Indices: 121264227--121264262 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
121264217 TATTATTATT
121264227 ATTTTCATTTTTAATGTG
1 ATTTTCATTTTTAATGTG
121264245 ATTTTCATTTTTAATGTG
1 ATTTTCATTTTTAATGTG
121264263 TATAGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.11, T:0.61
Consensus pattern (18 bp):
ATTTTCATTTTTAATGTG
Found at i:121265322 original size:3 final size:3
Alignment explanation
Indices: 121265314--121265366 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
121265304 AATAAATGCT
121265314 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
121265362 TAA TA
1 TAA TA
121265367 TACCGCTTAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:121269425 original size:14 final size:15
Alignment explanation
Indices: 121269394--121269439 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
121269384 TTATATTAAA
121269394 TTATTTAAATATAAT
1 TTATTTAAATATAAT
*
121269409 TTATTTAAA-ATATT
1 TTATTTAAATATAAT
*
121269423 TTATATATAAT-TAAT
1 TTATTTA-AATATAAT
121269438 TT
1 TT
121269440 TACAAATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATTTAAATATAAT
Found at i:121269454 original size:27 final size:25
Alignment explanation
Indices: 121269391--121269457 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
121269381 TCATTATATT
* * *
121269391 AAATTATTTAAATATAATTTATTTA
1 AAATAATTTATATATAATTAATTTA
*
121269416 AAATATTTTATATATAATTAATTTTA
1 AAATAATTTATATATAATTAA-TTTA
121269442 CAAATAATTTATATAT
1 -AAATAATTTATATAT
121269458 TAACTGCTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 17 0.49
26 4 0.11
27 14 0.40
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (25 bp):
AAATAATTTATATATAATTAATTTA
Found at i:121270041 original size:31 final size:31
Alignment explanation
Indices: 121270006--121270068 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
121269996 AAAGCCAACC
*
121270006 CAGAAATGAACCAAGACCAGCAAGGCCCAAT
1 CAGAAACGAACCAAGACCAGCAAGGCCCAAT
*
121270037 CAGAAACGAACCAAGACCTGCAAGGCCCAAT
1 CAGAAACGAACCAAGACCAGCAAGGCCCAAT
121270068 C
1 C
121270069 CCGAGAGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.32, G:0.19, T:0.06
Consensus pattern (31 bp):
CAGAAACGAACCAAGACCAGCAAGGCCCAAT
Found at i:121277001 original size:15 final size:15
Alignment explanation
Indices: 121276978--121277009 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
121276968 ACACGTTGAG
121276978 GTATCTTCAATTTAT
1 GTATCTTCAATTTAT
*
121276993 GTATTTTCAATTTAT
1 GTATCTTCAATTTAT
121277008 GT
1 GT
121277010 TTCAAAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.56
Consensus pattern (15 bp):
GTATCTTCAATTTAT
Found at i:121277222 original size:89 final size:87
Alignment explanation
Indices: 121276922--121277444 Score: 445
Period size: 86 Copynumber: 5.9 Consensus size: 87
121276912 TTTATTTCTG
* * * * * *
121276922 TTTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATCTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
* *
121276987 ATTTATGTATTTTCAA-TT-TAT
66 AGTTCTGT-TTTTCAATTTATAT
* * * *
121277008 GTTTCAAAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCGGGTCGCATG-TCGAGGTATTT
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG--GCACGCT-GAGGTATTT
* * * *
121277072 TCAAAATT-TGCTTTTCAAATTCTA-
63 TC-AAGTTCTGTTTTTCAATTTATAT
* * * *
121277096 TTTTCAAAAATCAACTCGTATTACGACAAGTGAGTTGAGCCTCAGGGCACGCTGAGGAATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
* * **
121277161 AGTTCCGTTTTTCAATTTCTGC
66 AGTTCTGTTTTTCAATTTATAT
* **
121277183 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GACTCACATGCTGAGGTAT
1 TTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG-GGCAC--GCTGAGGTAT
*
121277247 TTTC-AGTTTCTATTTTTTTCAATTTATAT
61 TTTCAAG-TTC--TGTTTTTCAATTTATAT
* * *
121277276 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA---CATGCTGAGGAATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
* * *
121277338 ATTTTTGTTTTTTTTAATTTATAT
66 AGTTCTG--TTTTTCAATTTATAT
* * * * *
121277362 TTTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACATGCTAAGGTAATT
1 TTTTC---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTT
* *
121277427 TCAATTTCTGTTTGTCAA
63 TCAAGTTCTGTTTTTCAA
121277445 AATCAACTCA
Statistics
Matches: 361, Mismatches: 49, Indels: 50
0.78 0.11 0.11
Matches are distributed among these distances:
84 1 0.00
85 4 0.01
86 100 0.28
87 15 0.04
88 61 0.17
89 80 0.22
90 8 0.02
91 54 0.15
92 21 0.06
93 17 0.05
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (87 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
AGTTCTGTTTTTCAATTTATAT
Found at i:121277267 original size:16 final size:16
Alignment explanation
Indices: 121277246--121277279 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
121277236 TGCTGAGGTA
* *
121277246 TTTTCAGTTTCTATTT
1 TTTTCAATTTATATTT
121277262 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
121277278 TT
1 TT
121277280 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Done.