Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 397 of 425
Found at i:121481228 original size:147 final size:148
Alignment explanation
Indices: 121480958--121481569 Score: 743
Period size: 147 Copynumber: 4.0 Consensus size: 148
121480948 AAGGCAGAAA
*
121480958 TTGAAAAAC-GAAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAG-AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCACAATA
* * *
121481022 CGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
63 TGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
121481087 TCGCAATATGAGTTGATTTTT
128 TCGCAATATGAGTTGATTTTT
* * **
121481108 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
* * * *
121481173 GTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTTTCG
66 GTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
121481237 CAATATGAGTTGATTTTT
131 CAATATGAGTTGATTTTT
* *
121481255 TTGAAAAACAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
* *
121481320 GTTGATTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GA
66 GTTGA---TTTT-----------TTGAA-AACAGAAATTGAAAATACCTCAGC--GTG-TCCTGA
*
121481384 GGCTCAACTCACCTCTCGCAATATGAGTT-A--ATT
113 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * *
121481417 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
* * * *
121481482 GTTGA-TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGGGGCTTAACTCACCTTT
66 GTTGATTTTTTG-AAAACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
121481546 CGCAATATGAGTTGATTTTT
129 CGCAATATGAGTTGATTTTT
121481566 TTGA
1 TTGA
121481570 TTTTTTTTTT
Statistics
Matches: 402, Mismatches: 34, Indels: 53
0.82 0.07 0.11
Matches are distributed among these distances:
145 2 0.00
146 31 0.08
147 149 0.37
148 47 0.12
149 6 0.01
150 31 0.08
151 3 0.01
158 3 0.01
162 73 0.18
163 22 0.05
164 1 0.00
165 33 0.08
166 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTT
Found at i:121481330 original size:74 final size:74
Alignment explanation
Indices: 121480958--121481566 Score: 633
Period size: 75 Copynumber: 8.0 Consensus size: 74
121480948 AAGGCAGAAA
* *
121480958 TTGAAAAAC-GAAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAG-AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATA
*
121481022 CGAGTTGATTTT
63 TGAGTTGATTTT
* *
121481034 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
121481098 GTTGATTTTT
66 GTTGA-TTTT
* * ** *
121481108 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
121481173 GTTGA-ATT
66 GTTGATTTT
* * *
121481181 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
121481245 GTTGATTTTT
66 GTTGA-TTTT
*
121481255 TTGAAAAACAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
121481320 GTTGATTTT
66 GTTGATTTT
* ** * ** * * * * *
121481329 TTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAG-CATGTGAGC-CGAGGCTCAAC
1 TTGAAAAACAGAAATTG-A-AA-A-TACCT---CAG-CGT--GTCCTGAG-GCTC-A-ACTC---
*
121481392 TCACCTCTCGCAATATGAGTT-A-ATT
50 --ACCTCTCGCAATATGAGTTGATTTT
* * *
121481417 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
121481482 GTTGA-TTT
66 GTTGATTTT
* * * *
121481490 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGGGGCTTAACTCACCTTTCGCAATATG
1 TTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
121481555 AGTTGATTTT
65 AGTTGATTTT
121481565 TT
1 TT
121481567 TGATTTTTTT
Statistics
Matches: 447, Mismatches: 57, Indels: 59
0.79 0.10 0.10
Matches are distributed among these distances:
72 79 0.18
73 54 0.12
74 79 0.18
75 153 0.34
76 6 0.01
77 4 0.01
78 6 0.01
79 4 0.01
80 2 0.00
81 4 0.01
82 2 0.00
83 5 0.01
84 6 0.01
85 3 0.01
86 2 0.00
87 1 0.00
88 17 0.04
89 1 0.00
90 19 0.04
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:121481353 original size:14 final size:14
Alignment explanation
Indices: 121481334--121481361 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
121481324 ATTTTTTTAC
121481334 GAACAGAAATTGAA
1 GAACAGAAATTGAA
121481348 GAACAGAAATTGAA
1 GAACAGAAATTGAA
121481362 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:121481432 original size:88 final size:88
Alignment explanation
Indices: 121481255--121481436 Score: 253
Period size: 88 Copynumber: 2.1 Consensus size: 88
121481245 GTTGATTTTT
* * *
121481255 TTGAAAAACAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
121481320 GTTGATTTTTTTACGAACAGAAA
66 GTTGATATTTTGACAAACAGAAA
*
121481343 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAATA
121481407 TGAGTT-A-ATTTTGACAAACAGAAA
63 TGAGTTGATATTTTGACAAACAGAAA
121481431 TTGAAA
1 TTGAAA
121481437 TTACCTCAGC
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
88 46 0.55
89 1 0.01
90 34 0.41
91 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (88 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATATTTTGACAAACAGAAA
Found at i:121481473 original size:72 final size:72
Alignment explanation
Indices: 121481343--121481564 Score: 291
Period size: 74 Copynumber: 3.0 Consensus size: 72
121481333 CGAACAGAAA
* * **
121481343 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
121481408 GAGTTAATT
64 GAGTTAATT
* *
121481417 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
121481482 GTTGATTT
66 GTT-AATT
* * * * *
121481490 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGGGGCTTAACTCACCTTTCGCAATATG
1 TTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
121481555 AGTTGATT
65 AGTTAATT
121481563 TT
1 TT
121481565 TTTGATTTTT
Statistics
Matches: 130, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
72 36 0.28
73 20 0.15
74 74 0.57
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.27
Consensus pattern (72 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTAATT
Found at i:121481603 original size:14 final size:14
Alignment explanation
Indices: 121481584--121481610 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
121481574 TTTTTTTACA
121481584 AACAGAAATTGAAG
1 AACAGAAATTGAAG
121481598 AACAGAAATTGAA
1 AACAGAAATTGAA
121481611 AAGACCTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.15
Consensus pattern (14 bp):
AACAGAAATTGAAG
Found at i:121481714 original size:54 final size:55
Alignment explanation
Indices: 121481632--121481739 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 55
121481622 ATGTGAGCCG
* * *
121481632 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGACA-AACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGTAACATGAGTTGATTTTTGAAACAACAAAAATTAAA
* *
121481686 AGGCTTAACTCACTTCTCGTAACATGAGTTGATTTTTGAAACAACAAAAATTAA
1 AGGCTCAACTCACCTCTCGTAACATGAGTTGATTTTTGAAACAACAAAAATTAA
121481740 GAATACCTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
54 37 0.77
55 11 0.23
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.31
Consensus pattern (55 bp):
AGGCTCAACTCACCTCTCGTAACATGAGTTGATTTTTGAAACAACAAAAATTAAA
Found at i:121481905 original size:133 final size:132
Alignment explanation
Indices: 121481686--121481928 Score: 355
Period size: 133 Copynumber: 1.8 Consensus size: 132
121481676 AGAAATTAAA
* * *
121481686 AGGCTTAACTCACTTCTCGTAACATGAGTTGATTTTTGAAACAACAAAAATTAAGAATACCTCAG
1 AGGCTCAACTCACTTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAAAATACCTCAG
*
121481751 CGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAATTACCTCATCATGTCC
66 CGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAATTACCTCATCATGTCC
121481816 TG
131 TG
* * *
121481818 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTTTTGAAA-AATAGAAATTTAAAAATACCT
1 AGGCTCAACTCACT-TCTCGCAACATGAGTTGA-TTTTTGAAACAACA-AAAATTAAAAATACCT
* * *
121481881 CAGCGTGTCCTAAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTT
63 CAGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
121481929 TTTTTTACGA
Statistics
Matches: 98, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
131 1 0.01
132 30 0.31
133 67 0.68
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (132 bp):
AGGCTCAACTCACTTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAAAATACCTCAG
CGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAATTACCTCATCATGTCC
TG
Found at i:121481956 original size:14 final size:14
Alignment explanation
Indices: 121481937--121481964 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
121481927 TTTTTTTTAC
121481937 GAACAGAAATTGAA
1 GAACAGAAATTGAA
121481951 GAACAGAAATTGAA
1 GAACAGAAATTGAA
121481965 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:121482089 original size:354 final size:353
Alignment explanation
Indices: 121481431--121482278 Score: 1276
Period size: 354 Copynumber: 2.4 Consensus size: 353
121481421 CAAACAGAAA
* * *
121481431 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAATTACCTCATCATGTCCAGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* * *
121481496 AACAGAAATTTAAAAATACCTCAGCGTGTCCTGGGGCTTAACTCACCTTTCGCAATATGAGTTGA
66 AACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA---G-
121481561 TTTTTTTGATTTTTTTTTTTACAAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGT
127 -----TTGA-TTTTTTTTTTACAAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGT
*
121481626 GAGCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGACAAACAGAAATTAAAAGGCT
186 GAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAGGCT
*
121481691 TAACTCACTTCTCGTAACATGAGTTGATTTTTGAAACAACAAAAATTAAGAATACCTCAGCGTGA
251 TAACTCACTTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAGAATACCTCAGCGTGA
121481756 CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
316 CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
* *
121481794 TTGAAATTACCTCATCATGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAA
1 TTGAAATTACCTCATCATGTCCAGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA
* * *
121481859 AAATAGAAATTTAAAAATACCTCAGCGTGTCCTAAGGCTGAACTCACCTCTCGCAATATGAGTTG
65 AAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
121481924 ATTTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGATG
130 ATTTTTTTTTTACAAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGG
*
121481989 CTCAACTTACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAGGCTTAACTCACT
195 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAGGCTTAACTCACT
121482054 TCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAGAATACCTCAGCGTGACCTGAGGCT
260 TCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAGAATACCTCAGCGTGACCTGAGGCT
121482119 CAACTCACCTCTCGCAATATGAGCTGATT
325 CAACTCACCTCTCGCAATATGAGCTGATT
** * * * * * * *
121482148 TTGAAA--AAGT-ATAAAT-T-AAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAC
1 TTGAAATTACCTCAT-CATGTCCAGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
* * * * *
121482208 AAACAGAAA-TTGAAATTACCTCATCATGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTG
65 AAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
121482272 ATTTTTT
130 ATTTTTT
121482279 GAAAAATAGA
Statistics
Matches: 450, Mismatches: 33, Indels: 19
0.90 0.07 0.04
Matches are distributed among these distances:
348 55 0.12
349 14 0.03
350 29 0.06
351 3 0.01
352 4 0.01
354 224 0.50
355 4 0.01
361 1 0.00
363 52 0.12
364 64 0.14
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (353 bp):
TTGAAATTACCTCATCATGTCCAGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
AACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTTTTACAAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAGGCTTAACTCACTT
CTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAGAATACCTCAGCGTGACCTGAGGCTC
AACTCACCTCTCGCAATATGAGCTGATT
Found at i:121482274 original size:127 final size:127
Alignment explanation
Indices: 121481952--121482297 Score: 403
Period size: 128 Copynumber: 2.7 Consensus size: 127
121481942 GAAATTGAAG
* * *
121481952 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GATGCTCAACTTACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAATACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
121482016 GATTTTTGACAAACAGAAATTAAAAGGCTTAACTCACTTCTCGCAACATGAGTTGATTTTTGAAA
63 GA-TTTTGAAAAACAGAAATTAAAAGGCTTAACCCACCTCTCGCAACATGAGTTGATTCTTGAAA
121482081 C
127 C
* * * *
121482082 AACAAAAATT-AAGAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
1 AACAGAAATTGAA-AATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
121482146 TTTTGAAAAAGTATAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACA-
65 TTTTGAAAAA-CAGAAATTAAAAGGCTT-AACCCACCTCTCGCAACATGAGTTGATTCTTGAAAC
* * *
121482209 AACAGAAATTGAAATTACCTCATCATGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
121482274 TTTTTGAAAAATAGAAATTTAAAA
65 -TTTTGAAAAACAGAAA-TTAAAA
121482298 ATACCTCAGC
Statistics
Matches: 185, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
127 67 0.36
128 79 0.43
129 18 0.10
130 21 0.11
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (127 bp):
AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGAAAAACAGAAATTAAAAGGCTTAACCCACCTCTCGCAACATGAGTTGATTCTTGAAAC
Found at i:121482327 original size:75 final size:75
Alignment explanation
Indices: 121482172--121482593 Score: 397
Period size: 75 Copynumber: 5.5 Consensus size: 75
121482162 ATTAAAAGGT
* * * * * *
121482172 TCAACCCACCTCTCGCAATATGAGTTGA-TTCTTGACAAACAGAAA-TTGAAATTACCTCATCAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTTAAAAATACCTCAGCGT
121482235 GTCCTGAGGC
66 GTCCTGAGGC
* * *
121482245 TCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTTAAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTTAAAAATACCTCAGCGT
*
121482310 GTCTTGAGGC
66 GTCCTGAGGC
* * * * **
121482320 TCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTACAAACAGAAATTGAAGAACAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGACAAACAGAAATTTAA-AA-A-TACCT-
* * * *
121482385 AAAAGACCTCAG-CATGTGAGC
60 --CAG-CGT--GTCCTGAG-GC
* * * *
121482406 -CGAGGCTCAACTCACCTATCGCAATATGAGTTGA-TTTTTGACAAACAGAAA-TTGAAATTACC
1 TC-A-ACT-----CACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTTAAAAATACC
*
121482468 TCAGCGTGTCCCGAGGC
59 TCAGCGTGTCCTGAGGC
*
121482485 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTTAAAAATACCTCAGCGT
121482550 GTCCTGAGGC
66 GTCCTGAGGC
121482560 TCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTT
121482594 TTTTACGAAC
Statistics
Matches: 280, Mismatches: 44, Indels: 48
0.75 0.12 0.13
Matches are distributed among these distances:
73 47 0.17
74 30 0.11
75 108 0.39
77 19 0.07
78 4 0.01
79 5 0.02
80 6 0.02
81 2 0.01
82 2 0.01
83 2 0.01
84 2 0.01
85 7 0.03
86 4 0.01
87 4 0.01
88 2 0.01
89 16 0.06
92 20 0.07
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (75 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTTAAAAATACCTCAGCGT
GTCCTGAGGC
Found at i:121482379 original size:14 final size:14
Alignment explanation
Indices: 121482360--121482386 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
121482350 TTTTTTTACA
121482360 AACAGAAATTGAAG
1 AACAGAAATTGAAG
121482374 AACAGAAATTGAA
1 AACAGAAATTGAA
121482387 AAGACCTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.15
Consensus pattern (14 bp):
AACAGAAATTGAAG
Found at i:121482486 original size:165 final size:165
Alignment explanation
Indices: 121482209--121482774 Score: 465
Period size: 165 Copynumber: 3.4 Consensus size: 165
121482199 ATTCTTGACA
** * * *
121482209 AACAGAAATTGAAATTACCTCATCATGTCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
* **
121482274 TTTTTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
66 TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
121482339 ATGAGTTAATTTTTTTTTACAAACAGAAATTGAAG
131 ATGAGTTAATTTTTTTTTACAAACAGAAATTGAAG
121482374 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTATCGCAATATGAGTT
1 AACAGAAATTGAAAAGACCTCAGCATGT---CCTGAGGCTCAACTCACCTATCGCAATATGAGTT
* * *
121482438 GA-TTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
63 GATTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
* * *
121482501 AATATGAGTTGA--TTTTTTGAAAAACAGAAATT----
128 AATATGAGTTAATTTTTTTTTACAAACAGAAATTGAAG
* * *
121482533 TA-A-AAA-T------ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGA-
* * **
121482589 TTTTTTTTTACGAACAAAAATTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCCGAGGC
65 ---TTTTTT--G-------A---AA-AACAGAAATTTAAAAATACCTCAGC--GTGTCCCGAGGC
* * * *
121482653 TCAACACACCTCTCGCAATATGAGTTGA-TTTTTTTGA-AGAGCAGAAATTGGAA-
112 TCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTACA-AACAGAAATT-GAAG
* * * * * * * *
121482706 AGCAGAAATCGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTTGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
121482771 TTTT
66 TTTT
121482775 GGAATAGAAA
Statistics
Matches: 332, Mismatches: 30, Indels: 65
0.78 0.07 0.15
Matches are distributed among these distances:
147 2 0.01
148 32 0.10
150 11 0.03
153 5 0.02
155 1 0.00
156 1 0.00
157 3 0.01
158 1 0.00
159 1 0.00
162 1 0.00
163 18 0.05
165 77 0.23
166 37 0.11
167 31 0.09
168 40 0.12
169 17 0.05
174 1 0.00
175 3 0.01
178 5 0.02
182 45 0.14
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (165 bp):
AACAGAAATTGAAAAGACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTAATTTTTTTTTACAAACAGAAATTGAAG
Found at i:121482675 original size:93 final size:90
Alignment explanation
Indices: 121482521--121482774 Score: 316
Period size: 91 Copynumber: 2.8 Consensus size: 90
121482511 GATTTTTTGA
* *
121482521 AAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAA-TTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
121482586 GATTTTTTTTTTACGAACAAAAATTG
65 GATTTTTTTTTGAAGAACAAAAATTG
* * *
121482612 AAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACACACCTCTCGCAATATGA
1 AA-AACAGAAATTGAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
121482676 GTTGA--TTTTTTTGAAGAGCAGAAATTGG
62 GTTGATTTTTTTTTGAAGAACAAAAATT-G
* * * *
121482704 AAAGCAGAAATCGAAAATACCTCAGCGTGCCCTGAAGCTCAACTCACCTCTTGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
121482769 ATTTTT
66 ATTTTT
121482775 GGAATAGAAA
Statistics
Matches: 140, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
88 2 0.01
89 33 0.24
91 57 0.41
92 11 0.08
93 35 0.25
94 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (90 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTTGAAGAACAAAAATTG
Found at i:121491043 original size:12 final size:12
Alignment explanation
Indices: 121491023--121491058 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
121491013 TGGGATATGC
*
121491023 AATGTATGAATG
1 AATGCATGAATG
121491035 AATGCATGAATG
1 AATGCATGAATG
121491047 AATGCATGAATG
1 AATGCATGAATG
121491059 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:121492600 original size:16 final size:15
Alignment explanation
Indices: 121492579--121492626 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
121492569 GATGTGAATA
121492579 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
121492595 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
121492610 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
121492626 A
1 A
121492627 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:121492602 original size:24 final size:24
Alignment explanation
Indices: 121492575--121492630 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
121492565 TAATGATGTG
*
121492575 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
121492599 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
121492623 AATAATAA
1 AATAATAA
121492631 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:121492609 original size:8 final size:8
Alignment explanation
Indices: 121492575--121492626 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
121492565 TAATGATGTG
*
121492575 AATAATAA
1 AATATTAA
121492583 AATATATAA
1 AATAT-TAA
121492592 AATA-TAA
1 AATATTAA
121492599 AATATTAA
1 AATATTAA
*
121492607 AATATCAA
1 AATATTAA
*
121492615 AATATTAG
1 AATATTAA
121492623 AATA
1 AATA
121492627 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:121492846 original size:22 final size:24
Alignment explanation
Indices: 121492783--121492847 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
121492773 CGTGATAATA
*
121492783 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
121492808 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
121492831 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
121492848 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:121492867 original size:2 final size:2
Alignment explanation
Indices: 121492860--121492930 Score: 53
Period size: 2 Copynumber: 37.5 Consensus size: 2
121492850 TAACATGTAA
* * * *
121492860 AT AT AT AT AT AT AA AT A- AT AT A- AT AT -T AA AG AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
121492899 AT A- AA AT AGT AT A- AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT A
121492931 CGTAATATAG
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
1 5 0.09
2 48 0.87
3 2 0.04
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.39
Consensus pattern (2 bp):
AT
Found at i:121492872 original size:30 final size:29
Alignment explanation
Indices: 121492836--121492903 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
121492826 TATAGTTAAG
* *
121492836 ATATATACATAAGATAACATGTAAATATAT
1 ATATATAAATAAGATAACAT-TAAAGATAT
* *
121492866 ATATATAAATAATATAATATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAGATAT
*
121492895 ATACATAAA
1 ATATATAAA
121492904 ATAGTATAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAGATAT
Found at i:121492919 original size:25 final size:26
Alignment explanation
Indices: 121492862--121492922 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
121492852 ACATGTAAAT
*
121492862 ATATATATATAAATAATATAATATTA
1 ATATATATATAAATAAAATAATATTA
* * *
121492888 A-AGATATATACATAAAATAGTA-TA
1 ATATATATATAAATAAAATAATATTA
121492912 ATATATATATA
1 ATATATATATA
121492923 TATATATACG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 3 0.10
25 25 0.86
26 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (26 bp):
ATATATATATAAATAAAATAATATTA
Found at i:121493547 original size:30 final size:30
Alignment explanation
Indices: 121493497--121493671 Score: 253
Period size: 30 Copynumber: 5.8 Consensus size: 30
121493487 TAGGTACAAG
* *
121493497 TGGTGGAGGAGAAGGTGTGGCTAGTAGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTAGAGT
* * *
121493527 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTAGAGT
121493557 TGGTGGTGGAAAAGGTGTGGCTAGTAGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTAGAGT
* *
121493587 TGGTGGTGGAAAAAGAGTGGCTAGT-GCAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTAG-AGT
*
121493617 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTAGAGT
*
121493647 TGGTGGTAGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
121493672 TGAGAAAAGT
Statistics
Matches: 130, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
29 1 0.01
30 128 0.98
31 1 0.01
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTAGAGT
Found at i:121493590 original size:60 final size:60
Alignment explanation
Indices: 121493497--121493671 Score: 287
Period size: 60 Copynumber: 2.9 Consensus size: 60
121493487 TAGGTACAAG
* * *
121493497 TGGTGGAGGAGAAGGTGTGGCTAGTAGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTAGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGCAGT
121493557 TGGTGGTGGAAAAGGTGTGGCTAGTAGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGCAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTAGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGCAGT
* * * *
121493617 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTAGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTAGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
121493672 TGAGAAAAGT
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 108 1.00
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTAGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGCAGT
Found at i:121494177 original size:40 final size:40
Alignment explanation
Indices: 121494133--121494213 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
121494123 TTTCATTAGA
* **
121494133 AATTTTACAGTTCAATGCAGTATACGTAACAATATTCAGT
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
* * *
121494173 AATTTCATAGTTCAATTCAGTATTCAAAACAATATTCAGT
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
121494213 A
1 A
121494214 TCCCATAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.36
Consensus pattern (40 bp):
AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
Found at i:121494489 original size:13 final size:14
Alignment explanation
Indices: 121494471--121494505 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
121494461 AAATCTCTAG
121494471 TTTTTTCTTTTC-C
1 TTTTTTCTTTTCTC
*
121494484 TTTTTTTTTTTCTC
1 TTTTTTCTTTTCTC
121494498 TTTTTTCT
1 TTTTTTCT
121494506 CCCCTGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTCTTTTCTC
Found at i:121496595 original size:20 final size:21
Alignment explanation
Indices: 121496572--121496611 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
121496562 CACTTTATCT
121496572 ATTTTTGAAATTTTC-ATTTA
1 ATTTTTGAAATTTTCTATTTA
* *
121496592 ATTTTTTATATTTTCTATTT
1 ATTTTTGAAATTTTCTATTT
121496612 TTTTATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (21 bp):
ATTTTTGAAATTTTCTATTTA
Found at i:121496615 original size:17 final size:18
Alignment explanation
Indices: 121496593--121496626 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
121496583 TTTCATTTAA
121496593 TTTTTTATAT-TTTCTAT
1 TTTTTTATATATTTCTAT
121496610 TTTTTTATATATTTCTA
1 TTTTTTATATATTTCTA
121496627 AAATTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTATATATTTCTAT
Found at i:121498227 original size:19 final size:19
Alignment explanation
Indices: 121498191--121498243 Score: 79
Period size: 19 Copynumber: 2.7 Consensus size: 19
121498181 GAATAACTTG
*
121498191 TGAATTGATACAAAATCAAT
1 TGAATCGATAC-AAATCAAT
121498211 TGAATCGATACAAATCAAT
1 TGAATCGATACAAATCAAT
*
121498230 TGAATCGATCCAAA
1 TGAATCGATACAAA
121498244 AAAATCAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 21 0.68
20 10 0.32
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.26
Consensus pattern (19 bp):
TGAATCGATACAAATCAAT
Found at i:121498252 original size:23 final size:19
Alignment explanation
Indices: 121498191--121498258 Score: 73
Period size: 19 Copynumber: 3.3 Consensus size: 19
121498181 GAATAACTTG
*
121498191 TGAATTGATACAAAATCAAT
1 TGAATCGATA-AAAATCAAT
*
121498211 TGAATCGATACAAATCAAT
1 TGAATCGATAAAAATCAAT
121498230 TGAATCGATCCAAAAAAATCAAT
1 TGAATCGAT----AAAAATCAAT
121498253 TGAATC
1 TGAATC
121498259 TATTTTCTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
19 17 0.41
20 9 0.22
23 15 0.37
ACGTcount: A:0.49, C:0.15, G:0.10, T:0.26
Consensus pattern (19 bp):
TGAATCGATAAAAATCAAT
Found at i:121500223 original size:14 final size:14
Alignment explanation
Indices: 121500189--121500222 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
121500179 TAATATTTTA
121500189 TTTTTTTCTAGGTT
1 TTTTTTTCTAGGTT
121500203 TTTTTTTCTA-GTT
1 TTTTTTTCTAGGTT
121500216 TTTTTTT
1 TTTTTTT
121500223 TAATTTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.06, C:0.06, G:0.09, T:0.79
Consensus pattern (14 bp):
TTTTTTTCTAGGTT
Found at i:121500229 original size:12 final size:13
Alignment explanation
Indices: 121500189--121500230 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
121500179 TAATATTTTA
*
121500189 TTTTTTTCTAGGTT
1 TTTTTTTCTA-ATT
*
121500203 TTTTTTTCTAGTT
1 TTTTTTTCTAATT
121500216 TTTTTTT-TAATT
1 TTTTTTTCTAATT
121500228 TTT
1 TTT
121500231 GTCGCTTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 7 0.26
13 10 0.37
14 10 0.37
ACGTcount: A:0.10, C:0.05, G:0.07, T:0.79
Consensus pattern (13 bp):
TTTTTTTCTAATT
Found at i:121504043 original size:2 final size:2
Alignment explanation
Indices: 121504036--121504067 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
121504026 GCTGTTTAGG
121504036 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
121504068 ATCCTAAGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:121510257 original size:15 final size:16
Alignment explanation
Indices: 121510237--121510275 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
121510227 AATCCTTTAA
121510237 AAATTA-TAAAA-ATAT
1 AAATTACTAAAATA-AT
121510252 AAATTACTAAAATAAT
1 AAATTACTAAAATAAT
121510268 AAATTACT
1 AAATTACT
121510276 CATCCCTCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.27
16 15 0.68
17 1 0.05
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATTACTAAAATAAT
Found at i:121510269 original size:16 final size:16
Alignment explanation
Indices: 121510237--121510275 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
121510227 AATCCTTTAA
121510237 AAATTA-TAAAAATAT
1 AAATTACTAAAAATAT
121510252 AAATTACT-AAAATAAT
1 AAATTACTAAAAAT-AT
121510268 AAATTACT
1 AAATTACT
121510276 CATCCCTCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATTACTAAAAATAT
Found at i:121527465 original size:35 final size:35
Alignment explanation
Indices: 121527419--121527509 Score: 137
Period size: 35 Copynumber: 2.6 Consensus size: 35
121527409 TCAGCAGTGA
121527419 TAGTTCCAATTGTGCTTCTCTATGACAGATAAAGT
1 TAGTTCCAATTGTGCTTCTCTATGACAGATAAAGT
* * * *
121527454 TAGTTTCAATTGTGCTTCTTTTTGATAGATAAAGT
1 TAGTTCCAATTGTGCTTCTCTATGACAGATAAAGT
*
121527489 TAGTTCCAATTTTGCTTCTCT
1 TAGTTCCAATTGTGCTTCTCT
121527510 TGGATAAATA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 49 1.00
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.45
Consensus pattern (35 bp):
TAGTTCCAATTGTGCTTCTCTATGACAGATAAAGT
Found at i:121527521 original size:35 final size:34
Alignment explanation
Indices: 121527419--121527521 Score: 134
Period size: 35 Copynumber: 2.9 Consensus size: 34
121527409 TCAGCAGTGA
*
121527419 TAGTTCCAATTGTGCTTCTCTATGACAGATAAAGT
1 TAGTTCCAATTGTGCTTCTCT-TGATAGATAAAGT
* *
121527454 TAGTTTCAATTGTGCTTCTTTTTGATAGATAAAGT
1 TAGTTCCAATTGTGCTTC-TCTTGATAGATAAAGT
* *
121527489 TAGTTCCAATTTTGCTTCTCTTGGATAAATAAA
1 TAGTTCCAATTGTGCTTCTCTT-GATAGATAAA
121527522 TTTGGAGATA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
34 3 0.05
35 54 0.92
36 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.43
Consensus pattern (34 bp):
TAGTTCCAATTGTGCTTCTCTTGATAGATAAAGT
Found at i:121539583 original size:28 final size:25
Alignment explanation
Indices: 121539546--121539608 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
121539536 CAAAGAAATA
*
121539546 TAATAATAAAT--TTAAAATTTATAT
1 TAATAATAAATAAATAAAA-TTATAT
* *
121539570 TAATATTAAATAAATATAATTATAT
1 TAATAATAAATAAATAAAATTATAT
*
121539595 TAATAATAATTAAA
1 TAATAATAAATAAA
121539609 AAATTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 10 0.31
25 18 0.56
26 4 0.12
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
TAATAATAAATAAATAAAATTATAT
Found at i:121542445 original size:31 final size:31
Alignment explanation
Indices: 121542370--121542445 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 31
121542360 TTAGAGGATT
* * *
121542370 TAATTAAAATTTTCAAAACTTTTTAGATAGC
1 TAATTAAAATTTTCAAAACATTTGAGATACC
*
121542401 TCAATTAAAATTTTCAAAAGATTTGAGA-ACC
1 T-AATTAAAATTTTCAAAACATTTGAGATACC
121542432 TAATTGAAAATTTT
1 TAATT-AAAATTTT
121542446 GGAAGTGTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 4 0.10
31 12 0.31
32 23 0.59
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39
Consensus pattern (31 bp):
TAATTAAAATTTTCAAAACATTTGAGATACC
Found at i:121558120 original size:13 final size:13
Alignment explanation
Indices: 121558102--121558126 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121558092 CTTACTTAAA
121558102 CCTTTATTCCAAC
1 CCTTTATTCCAAC
121558115 CCTTTATTCCAA
1 CCTTTATTCCAA
121558127 GAAAGTTGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (13 bp):
CCTTTATTCCAAC
Found at i:121560030 original size:21 final size:20
Alignment explanation
Indices: 121560004--121560056 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
121559994 ACAATGGTAA
*
121560004 TGGTGAGATTAATTACTGTAG
1 TGGTGAGATTAA-TACTATAG
121560025 TGGTGAGATTGAATACTATAG
1 TGGTGAGATT-AATACTATAG
*
121560046 CGGTGAGATTA
1 TGGTGAGATTA
121560057 GAAATAGCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 1 0.03
21 26 0.90
22 2 0.07
ACGTcount: A:0.30, C:0.06, G:0.30, T:0.34
Consensus pattern (20 bp):
TGGTGAGATTAATACTATAG
Found at i:121560299 original size:104 final size:99
Alignment explanation
Indices: 121560169--121560394 Score: 251
Period size: 100 Copynumber: 2.2 Consensus size: 99
121560159 AAAATAAATA
* * * *
121560169 ATTAAATTTATATTAATATTAAATAATATAACATAAAATAAAATTTTATTTTTTATAAAATGATA
1 ATTAAA-TTATATTAATAATAAATAATAAAACAT--AATAAAA--TTATTTTATATAAAATAATA
121560234 ATTAAAA-TATTATAATCATATG-CAATAAAATTTAAATATTT
61 ATTAAAATTA-TAT-AT-ATATGACAAT-AAATTTAAATATTT
* * *
121560275 -TTAAATTATATTAATAATAAATAATAAAACATATTTAAATTATTTTATATTAAATAATAATTAA
1 ATTAAATTATATTAATAATAAATAATAAAACATAATAAAATTATTTTATATAAAATAATAATTAA
* *
121560339 AATTATATATTTATGACAATAAATTTATATATTT
66 AATTATATATATATGACAATAAATTTAAATATTT
121560373 ATTAAATTATTATATAATAATA
1 ATTAAATTA-TAT-TAATAATA
121560395 TCTAATAATA
Statistics
Matches: 106, Mismatches: 9, Indels: 15
0.82 0.07 0.12
Matches are distributed among these distances:
98 17 0.16
99 14 0.13
100 30 0.28
101 10 0.09
102 5 0.05
104 25 0.24
105 5 0.05
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (99 bp):
ATTAAATTATATTAATAATAAATAATAAAACATAATAAAATTATTTTATATAAAATAATAATTAA
AATTATATATATATGACAATAAATTTAAATATTT
Found at i:121560364 original size:98 final size:103
Alignment explanation
Indices: 121560169--121560394 Score: 259
Period size: 104 Copynumber: 2.2 Consensus size: 103
121560159 AAAATAAATA
* * * *
121560169 ATTAAATTTATATTAATATTAAATAATATAACATAAAATAAAATTTTATTTTTTATAAAATGATA
1 ATTAAA-TTATATTAATAATAAATAATAAAACAT-AAATAAAA-TTTATTTTATATAAAATAATA
121560234 ATTAAAATATTATAATCATATGCAATAAAATTTAAATATTT
63 ATTAAAATATTATAATCATATGCAATAAAATTTAAATATTT
* * *
121560275 -TTAAATTATATTAATAATAAATAATAAAACAT-ATTTAAA-TTATTTTATATTAAATAATAATT
1 ATTAAATTATATTAATAATAAATAATAAAACATAAATAAAATTTATTTTATATAAAATAATAATT
* *
121560337 -AAA-ATTATATAT-TTATGACAAT-AAATTTATATATTT
66 AAAATATTATA-ATCATATG-CAATAAAATTTAAATATTT
121560373 ATTAAATTATTATATAATAATA
1 ATTAAATTA-TAT-TAATAATA
121560395 TCTAATAATA
Statistics
Matches: 106, Mismatches: 9, Indels: 15
0.82 0.07 0.12
Matches are distributed among these distances:
98 23 0.22
99 17 0.16
100 23 0.22
101 8 0.08
102 5 0.05
104 25 0.24
105 5 0.05
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (103 bp):
ATTAAATTATATTAATAATAAATAATAAAACATAAATAAAATTTATTTTATATAAAATAATAATT
AAAATATTATAATCATATGCAATAAAATTTAAATATTT
Found at i:121561273 original size:2 final size:2
Alignment explanation
Indices: 121561266--121561304 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
121561256 CTTCTGAATC
121561266 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121561305 TTTCTTTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:121561428 original size:2 final size:2
Alignment explanation
Indices: 121561411--121561445 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
121561401 TTATTACATG
* *
121561411 TA TA CA TA TA TT TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121561446 TTATTTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:121561629 original size:20 final size:22
Alignment explanation
Indices: 121561590--121561632 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
121561580 TACATGAAAA
*
121561590 TTATTTTAAACTCTTTTATTAT
1 TTATTGTAAACTCTTTTATTAT
121561612 TTATTGTAAAC-C-TTTATTAT
1 TTATTGTAAACTCTTTTATTAT
121561632 T
1 T
121561633 GCTAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 1 0.05
22 10 0.50
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.60
Consensus pattern (22 bp):
TTATTGTAAACTCTTTTATTAT
Found at i:121561681 original size:23 final size:22
Alignment explanation
Indices: 121561590--121561716 Score: 69
Period size: 23 Copynumber: 5.5 Consensus size: 22
121561580 TACATGAAAA
*
121561590 TTATTTTAAACTCTTTTATTAT
1 TTATTTTAAACTTTTTTATTAT
* * **
121561612 TTATTGTAAACCTTTATTATTGC
1 TTATTTTAAA-CTTTTTTATTAT
* * * *
121561635 TAATTTTAAGAC-TATATAGGTAT
1 TTATTTTAA-ACTTTTTTA-TTAT
121561658 TTATTTTAAACTTTTTTA-TAT
1 TTATTTTAAACTTTTTTATTAT
*
121561679 ATTATTTTAGATATATATATTTTATTAT
1 -TTATTTTA-A-A-CT-T-TTTTATTAT
121561707 TTATTTTAAA
1 TTATTTTAAA
121561717 TTTCTCTTTT
Statistics
Matches: 77, Mismatches: 17, Indels: 19
0.68 0.15 0.17
Matches are distributed among these distances:
21 3 0.04
22 22 0.29
23 30 0.39
24 2 0.03
25 2 0.03
26 2 0.03
27 13 0.17
28 3 0.04
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.57
Consensus pattern (22 bp):
TTATTTTAAACTTTTTTATTAT
Found at i:121561987 original size:18 final size:19
Alignment explanation
Indices: 121561956--121561997 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
121561946 AAATCATGTA
121561956 TGTTTTATTTATTTAAAAT
1 TGTTTTATTTATTTAAAAT
* *
121561975 TGTTTTA-TTATTTTAAGT
1 TGTTTTATTTATTTAAAAT
121561993 TGTTT
1 TGTTT
121561998 ATGTCCTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.67
Consensus pattern (19 bp):
TGTTTTATTTATTTAAAAT
Found at i:121564298 original size:22 final size:20
Alignment explanation
Indices: 121564273--121564312 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
121564263 AAATTTAATC
121564273 AAAGACATTATATATAATATAA
1 AAAGACA-TATAT-TAATATAA
*
121564295 AAAGATATATATTAATAT
1 AAAGACATATATTAATAT
121564313 CATTTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (20 bp):
AAAGACATATATTAATATAA
Found at i:121566763 original size:14 final size:15
Alignment explanation
Indices: 121566744--121566773 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
121566734 ACCTTTCGAA
121566744 TTCTTT-TTTTTCTT
1 TTCTTTCTTTTTCTT
121566758 TTCTTTCTTTTTCTT
1 TTCTTTCTTTTTCTT
121566773 T
1 T
121566774 CCACATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TTCTTTCTTTTTCTT
Found at i:121567627 original size:22 final size:21
Alignment explanation
Indices: 121567589--121567655 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 21
121567579 GCTTACTTAC
*
121567589 TTAAGTTTTATATTATTTATT
1 TTAAGTTTTTTATTATTTATT
121567610 TTAAGTTGTTTTATTATTTATT
1 TTAAGTT-TTTTATTATTTATT
121567632 TTAAGTTTTATATATTATTTATT
1 TTAAGTTTT-T-TATTATTTATT
121567655 T
1 T
121567656 CATACATTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
21 9 0.21
22 21 0.50
23 12 0.29
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (21 bp):
TTAAGTTTTTTATTATTTATT
Found at i:121567846 original size:26 final size:28
Alignment explanation
Indices: 121567793--121567854 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
121567783 TTAAATTGAT
*
121567793 TTATATATTATTTACTTCAAAATTTGTTC
1 TTATATATTATTTACTTC-AAATGTGTTC
*
121567822 TTATATATTATTTACTTC-AA-GTGTTT
1 TTATATATTATTTACTTCAAATGTGTTC
121567848 TTATATA
1 TTATATA
121567855 ATGATTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 11 0.35
27 2 0.06
29 18 0.58
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (28 bp):
TTATATATTATTTACTTCAAATGTGTTC
Found at i:121578597 original size:31 final size:32
Alignment explanation
Indices: 121578559--121578629 Score: 92
Period size: 31 Copynumber: 2.2 Consensus size: 32
121578549 TTTTGTTTTA
121578559 TTTTTTCTCATTT-TCCAATGAATGCAGTT-AT
1 TTTTTTCT-ATTTGTCCAATGAATGCAGTTGAT
* *
121578590 TTTTTTCTTTTTGTTCAATGAATGCAGTTGAT
1 TTTTTTCTATTTGTCCAATGAATGCAGTTGAT
*
121578622 TTCTTTCT
1 TTTTTTCT
121578630 TTGATCAGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 3 0.09
31 23 0.66
32 9 0.26
ACGTcount: A:0.18, C:0.14, G:0.11, T:0.56
Consensus pattern (32 bp):
TTTTTTCTATTTGTCCAATGAATGCAGTTGAT
Found at i:121584632 original size:28 final size:27
Alignment explanation
Indices: 121584567--121584634 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 27
121584557 TAAAATTCTA
*
121584567 ATTTTAAACATTTTAATAATTTTATATG
1 ATTTTAAA-ATTTTAATAATTTAATATG
*
121584595 A--TTAAAATTTTAATAATTTAACTATT
1 ATTTTAAAATTTTAATAATTTAA-TATG
*
121584621 ATTTTAATATTTTA
1 ATTTTAAAATTTTA
121584635 TCCATATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 14 0.41
26 9 0.26
28 11 0.32
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (27 bp):
ATTTTAAAATTTTAATAATTTAATATG
Found at i:121589958 original size:13 final size:13
Alignment explanation
Indices: 121589942--121589970 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
121589932 TTTTTCTGCT
121589942 TTTCTTTTTTCTA
1 TTTCTTTTTTCTA
121589955 TTTCTTTTTTCTA
1 TTTCTTTTTTCTA
121589968 TTT
1 TTT
121589971 TGAGTGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTCTTTTTTCTA
Found at i:121590092 original size:8 final size:8
Alignment explanation
Indices: 121590079--121590121 Score: 79
Period size: 8 Copynumber: 5.5 Consensus size: 8
121590069 GTCCTTTAGA
121590079 AATATAAT
1 AATATAAT
121590087 AATATAAT
1 AATATAAT
121590095 AATATAAT
1 AATATAAT
121590103 AATATAAT
1 AATATAAT
121590111 AATATAA-
1 AATATAAT
121590118 AATA
1 AATA
121590122 CTATTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 4 0.11
8 31 0.89
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AATATAAT
Found at i:121590150 original size:22 final size:22
Alignment explanation
Indices: 121590123--121590164 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
121590113 TATAAAATAC
*
121590123 TATTTTT-TTATTAATATTTATA
1 TATTTTTATAATTAA-ATTTATA
121590145 TATTTTTATAATTAAATTTA
1 TATTTTTATAATTAAATTTA
121590165 AATGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTTTTATAATTAAATTTATA
Found at i:121606460 original size:2 final size:2
Alignment explanation
Indices: 121606453--121606477 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
121606443 GAAAATAGCA
121606453 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
121606478 ATCAAATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121606683 original size:19 final size:20
Alignment explanation
Indices: 121606656--121606697 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
121606646 ATTAAAGAGC
121606656 AAATCGATCCTTCTATTA-A
1 AAATCGATCCTTCTATTACA
*
121606675 AAATTGATCCTTCTATTACA
1 AAATCGATCCTTCTATTACA
121606695 AAA
1 AAA
121606698 AGATAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (20 bp):
AAATCGATCCTTCTATTACA
Found at i:121607354 original size:2 final size:2
Alignment explanation
Indices: 121607343--121607376 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
121607333 CAACACAATC
*
121607343 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121607377 CATTGTTCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:121634834 original size:26 final size:27
Alignment explanation
Indices: 121634790--121634849 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
121634780 AATTGAGAAC
*
121634790 GAAAATAATAATTTAAATATTAAAATT
1 GAAAATAATAACTTAAATATTAAAATT
*
121634817 GAAAA-AATAACTTCAATATTAAAA-T
1 GAAAATAATAACTTAAATATTAAAATT
*
121634842 AAAAATAA
1 GAAAATAA
121634850 GTCTAATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 5 0.17
26 19 0.66
27 5 0.17
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (27 bp):
GAAAATAATAACTTAAATATTAAAATT
Found at i:121636943 original size:14 final size:13
Alignment explanation
Indices: 121636911--121636942 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
121636901 AAAAAAAAAC
121636911 AAAAAAGCTATTA
1 AAAAAAGCTATTA
*
121636924 AAAAAAGCTGTTA
1 AAAAAAGCTATTA
121636937 AAAAAA
1 AAAAAA
121636943 AACCATTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.19
Consensus pattern (13 bp):
AAAAAAGCTATTA
Found at i:121637087 original size:18 final size:19
Alignment explanation
Indices: 121637055--121637097 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
121637045 TACTCCCCTC
121637055 CTTCTCTTCTCTTTCTCTT
1 CTTCTCTTCTCTTTCTCTT
* *
121637074 TTTCT-TTCTTTTTCTCTT
1 CTTCTCTTCTCTTTCTCTT
121637092 CTTCTC
1 CTTCTC
121637098 ATTGCTTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (19 bp):
CTTCTCTTCTCTTTCTCTT
Found at i:121639826 original size:26 final size:27
Alignment explanation
Indices: 121639779--121639836 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
121639769 GAAGTACTGC
* *
121639779 ACTGGTGACTATGTCACGCTTACTATT
1 ACTGGTGACTATGCCACACTTACTATT
* *
121639806 ACTGGTGGCT-TGCCACACTTACTGTT
1 ACTGGTGACTATGCCACACTTACTATT
121639832 ACTGG
1 ACTGG
121639837 CAGCTACGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
ACTGGTGACTATGCCACACTTACTATT
Found at i:121644081 original size:12 final size:12
Alignment explanation
Indices: 121644066--121644097 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
121644056 ATAAATATAA
121644066 ATTTATATTAAT
1 ATTTATATTAAT
*
121644078 ATTTATATTTAT
1 ATTTATATTAAT
121644090 ATTTATAT
1 ATTTATAT
121644098 ATATTAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTTATATTAAT
Found at i:121647012 original size:42 final size:44
Alignment explanation
Indices: 121646966--121647049 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 44
121646956 AGATAATAAA
* *
121646966 AACCAACACAATAAATT-AAGCTCTAGCAAAACCA-AAAACAAT
1 AACCAACACAATAAATTAAAGCTCAAGCAAAACAAGAAAACAAT
* *
121647008 AACCAACACGATAAATTAAAGTTCAAGCAAAACAAGAAAACA
1 AACCAACACAATAAATTAAAGCTCAAGCAAAACAAGAAAACA
121647050 TGAAAATCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 16 0.44
43 14 0.39
44 6 0.17
ACGTcount: A:0.58, C:0.21, G:0.07, T:0.13
Consensus pattern (44 bp):
AACCAACACAATAAATTAAAGCTCAAGCAAAACAAGAAAACAAT
Found at i:121658232 original size:16 final size:16
Alignment explanation
Indices: 121658177--121658232 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
121658167 AAAAGTCAAC
*
121658177 AACCCACACCCAAAAT
1 AACCCAAACCCAAAAT
** *
121658193 AACCTGAACCTGAAAA-
1 AACCCAAACC-CAAAAT
*
121658209 AACACAAACCCAAAAT
1 AACCCAAACCCAAAAT
121658225 AACCCAAA
1 AACCCAAA
121658233 GAGGTAATCC
Statistics
Matches: 29, Mismatches: 9, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
15 4 0.14
16 21 0.72
17 4 0.14
ACGTcount: A:0.55, C:0.34, G:0.04, T:0.07
Consensus pattern (16 bp):
AACCCAAACCCAAAAT
Found at i:121662239 original size:23 final size:22
Alignment explanation
Indices: 121662208--121662260 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
121662198 AATCATTTTC
121662208 AAAA-ATTTATTTATATATATAT
1 AAAATATTTATTTATATAT-TAT
* *
121662230 AAATTATTTATTTTTATATTAT
1 AAAATATTTATTTATATATTAT
121662252 AAAATATTT
1 AAAATATTT
121662261 CAAACTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 14 0.52
23 13 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
AAAATATTTATTTATATATTAT
Found at i:121665322 original size:16 final size:16
Alignment explanation
Indices: 121665289--121665318 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
121665279 ATGTGTCTAT
121665289 TTTTTTAAAATATTTA
1 TTTTTTAAAATATTTA
121665305 TTTTTT-AAATATTT
1 TTTTTTAAAATATTT
121665319 TATTGTAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTTTAAAATATTTA
Found at i:121670115 original size:165 final size:168
Alignment explanation
Indices: 121669808--121670132 Score: 453
Period size: 165 Copynumber: 2.0 Consensus size: 168
121669798 TATTTATATA
* * * *
121669808 TTTTTTTGGTGAAAATGTTTATACCTTTTTTTAGGAGAACTTATTTATATGATGAACATAAAATC
1 TTTTTTTGGTGAAAAAGTTTATACCCTATTTTAGGAGAACTTATTGATATGATGAACATAAAATC
* * **
121669873 AAATTGTTTTGTAAAGTTTGAAGTAAATGACAAAAAAGGAAAGGTAAATAATTTCTTTGGTATTT
66 AAATTGTTTTATAAAGATTGAAGTAAATGACAAAAAAGGAAAGCAAAATAATTTCTTTGGTATTT
*
121669938 TTCTTCAGAAAATTCTTGATTGATGTTTATGTCTTTTT
131 TTCTTCAGAAAATCCTTGATTGATGTTTATGTCTTTTT
** *
121669976 TTTTTTTTTTGAAAAAGTTTATACCCTATTTTAGGTGAATCTT-TTGATATGATGAACATAAAAT
1 TTTTTTTGGTGAAAAAGTTTATACCCTATTTTAGGAGAA-CTTATTGATATGATGAACATAAAAT
** *
121670040 CAAATT-TTTTATAAA-ATT-ATTTAAATGACAAAAAATGAAAGCAAAATAATTTCTTTTGGTA-
65 CAAATTGTTTTATAAAGATTGAAGTAAATGACAAAAAAGGAAAGCAAAATAATTTC-TTTGGTAT
*
121670101 TTTTCTTTAGAAAATCCTTGATTGATGTTTAT
129 TTTTCTTCAGAAAATCCTTGATTGATGTTTAT
121670133 ACCTTTTATA
Statistics
Matches: 139, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
165 60 0.43
166 9 0.06
167 8 0.06
168 59 0.42
169 3 0.02
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (168 bp):
TTTTTTTGGTGAAAAAGTTTATACCCTATTTTAGGAGAACTTATTGATATGATGAACATAAAATC
AAATTGTTTTATAAAGATTGAAGTAAATGACAAAAAAGGAAAGCAAAATAATTTCTTTGGTATTT
TTCTTCAGAAAATCCTTGATTGATGTTTATGTCTTTTT
Found at i:121670692 original size:13 final size:13
Alignment explanation
Indices: 121670674--121670698 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
121670664 TCTTTTAAAA
121670674 AATTACTTTCAAT
1 AATTACTTTCAAT
121670687 AATTACTTTCAA
1 AATTACTTTCAA
121670699 CATGGTGGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
AATTACTTTCAAT
Found at i:121671676 original size:138 final size:134
Alignment explanation
Indices: 121671515--121671933 Score: 450
Period size: 138 Copynumber: 3.0 Consensus size: 134
121671505 GTGTGTGAAA
* *
121671515 ATGTTTATA-CCCTTTTAGTTGAATATTTTGATATGATGAGCTCAAAATTAGAC-AGTTGTGTAA
1 ATGTTTATACCCCTTTTAGGTGAAT-TTTTGATATGATGA-CTCAAAATTAAACTA-TT-TGTAA
* * *
121671578 AATTTAAAGTAAATGACAAAAAAGAAAAATAAAATAATTTCATTTGTTATTTTTGCTCGGAAAAT
62 AATTTAAAGTAAATGACAAAAAAGAAAAGTAAAATAATTTCTTTTGATATTTTT-CTCGGAAAAT
*
121671643 CCTTCATTG
126 CCTTAATTG
* *
121671652 ATGTTTATACCCCTTTTAGGTGAATTTTTTGTTATGATGAAACT-AAAATCAAACTATATTGTAA
1 ATGTTTATACCCCTTTTAGGTGAA-TTTTTGATATGATG--ACTCAAAATTAAACTAT-TTGTAA
* ** * * * *
121671716 AATTTTACTTAAATGACAAAAAAGGAAAGCAAAATAATTTCTTTTGGTATTTTTCTTCAGAAAAT
62 AATTTAAAGTAAATGACAAAAAAGAAAAGTAAAATAATTTCTTTTGATATTTTTC-TCGGAAAAT
* *
121671781 CCTTGATTA
126 CCTTAATTG
* * *
121671790 ATGTTTATTCCCCTATTAGGTGAATTTTTAGATATGATGAATGCAAAATTAAACTATTCTGTAAA
1 ATGTTTATACCCCTTTTAGGTGAATTTTT-GATATGATGACT-CAAAATTAAACTATT-TGTAAA
* *
121671855 ATTTAAAGTAAAT-AGCAAAAAAAGGAAAAGTAGAATAATTTCTTTTGATATTTTTCTTGAGAAA
63 ATTTAAAGTAAATGA-C-AAAAAA-GAAAAGTAAAATAATTTCTTTTGATATTTTTCTCG-GAAA
*
121671919 ATCCTTAACTG
124 ATCCTTAATTG
121671930 ATGT
1 ATGT
121671934 ATAATTATCT
Statistics
Matches: 235, Mismatches: 32, Indels: 27
0.80 0.11 0.09
Matches are distributed among these distances:
136 2 0.01
137 17 0.07
138 159 0.68
139 12 0.05
140 45 0.19
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (134 bp):
ATGTTTATACCCCTTTTAGGTGAATTTTTGATATGATGACTCAAAATTAAACTATTTGTAAAATT
TAAAGTAAATGACAAAAAAGAAAAGTAAAATAATTTCTTTTGATATTTTTCTCGGAAAATCCTTA
ATTG
Found at i:121677434 original size:3 final size:3
Alignment explanation
Indices: 121677428--121677465 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
121677418 TTTTTTACCC
*
121677428 TTA TTA TTA TTA TTA TTA TTA TTA TT- TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
121677466 ATGTTATGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 1 0.03
3 31 0.97
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:121677604 original size:17 final size:18
Alignment explanation
Indices: 121677566--121677605 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
121677556 CTAGCATAGC
121677566 ATTTATTTTATTTTATCT
1 ATTTATTTTATTTTATCT
*
121677584 -TTTATTTTA-TTTATTT
1 ATTTATTTTATTTTATCT
121677600 ATTTAT
1 ATTTAT
121677606 CTATCATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (18 bp):
ATTTATTTTATTTTATCT
Found at i:121680723 original size:28 final size:30
Alignment explanation
Indices: 121680663--121680725 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 30
121680653 TAAGTCCCCC
121680663 CCAA-AAAAACCTAACCCCTCCCAAAAAAA
1 CCAAGAAAAACCTAACCCCTCCCAAAAAAA
121680692 --AAGAAAAACCTAA-CCC-CCCAAAAAAA
1 CCAAGAAAAACCTAACCCCTCCCAAAAAAA
121680718 CCAAGAAA
1 CCAAGAAA
121680726 CCCTAGCCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
26 10 0.32
27 5 0.16
28 16 0.52
ACGTcount: A:0.59, C:0.33, G:0.03, T:0.05
Consensus pattern (30 bp):
CCAAGAAAAACCTAACCCCTCCCAAAAAAA
Found at i:121681538 original size:13 final size:14
Alignment explanation
Indices: 121681507--121681544 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
121681497 CTAATACGTA
*
121681507 TATATATATGTATTT
1 TATATATAT-TATTG
121681522 TATATATATTA-TG
1 TATATATATTATTG
121681535 TATATATATT
1 TATATATATT
121681545 TTTAATGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.50
14 2 0.09
15 9 0.41
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (14 bp):
TATATATATTATTG
Found at i:121683607 original size:12 final size:12
Alignment explanation
Indices: 121683590--121683625 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
121683580 ATTCATTTGA
121683590 CATTCATGCATT
1 CATTCATGCATT
*
121683602 CATTCATGCATC
1 CATTCATGCATT
*
121683614 CATTCATTCATT
1 CATTCATGCATT
121683626 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:121683619 original size:16 final size:17
Alignment explanation
Indices: 121683598--121683629 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
121683588 GACATTCATG
121683598 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
121683614 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
121683630 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:121692553 original size:2 final size:2
Alignment explanation
Indices: 121692546--121692582 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
121692536 ATGTGCAAAA
* *
121692546 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121692583 AAATATACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:121692684 original size:2 final size:2
Alignment explanation
Indices: 121692671--121692813 Score: 95
Period size: 2 Copynumber: 74.0 Consensus size: 2
121692661 GGAATTTAAA
* *
121692671 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
121692712 AGT AT TT A- AG A- AT AT AT AC AT A- AG AA AT AT AT A- ACT A- AT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
** * *
121692751 GGC AT AT AT AC AT A- AT AT AT AT AT A- AT AC AT AT AT AT AT AT
1 -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
121692792 AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
121692814 TAGAAATGAT
Statistics
Matches: 110, Mismatches: 20, Indels: 22
0.72 0.13 0.14
Matches are distributed among these distances:
1 8 0.07
2 99 0.90
3 3 0.03
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (2 bp):
AT
Found at i:121693346 original size:11 final size:12
Alignment explanation
Indices: 121693330--121693366 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
121693320 AGAAAAAAAA
121693330 GGAAGAGAG-AG
1 GGAAGAGAGAAG
121693341 GGAAGAGAGAAG
1 GGAAGAGAGAAG
121693353 GG-AGAGAGAAG
1 GGAAGAGAGAAG
121693364 GGA
1 GGA
121693367 GGGGAAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:121693367 original size:11 final size:11
Alignment explanation
Indices: 121693328--121693376 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
121693318 AAAGAAAAAA
*
121693328 AAGGAAGAGAG
1 AAGGGAGAGAG
121693339 -AGGGAAGAGAG
1 AAGGG-AGAGAG
121693350 AAGGGAGAGAG
1 AAGGGAGAGAG
*
121693361 AAGGGAG-GGG
1 AAGGGAGAGAG
121693371 AAGGGA
1 AAGGGA
121693377 AATCCGGTCG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 11 0.32
11 19 0.56
12 4 0.12
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (11 bp):
AAGGGAGAGAG
Found at i:121693671 original size:14 final size:15
Alignment explanation
Indices: 121693636--121693671 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
121693626 TTTTTTGGTT
121693636 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
121693651 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
121693665 TTTTTTT
1 TTTTTTT
121693672 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:121693672 original size:15 final size:16
Alignment explanation
Indices: 121693635--121693673 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
121693625 TTTTTTTGGT
121693635 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
121693651 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
121693665 TTTTTTTTG
1 TTTTTTTTG
121693674 GTGCTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:121693685 original size:32 final size:31
Alignment explanation
Indices: 121693634--121693708 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 31
121693624 TTTTTTTTGG
*
121693634 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTGCTGGAAATTTTTTGCTGGAAA
**
121693665 TTTTTTTTGGTGCTGG-AATTTTTTGCTGGATT
1 TTTTTTTT--TGCTGGAAATTTTTTGCTGGAAA
121693697 TTTTTTTTTGCT
1 TTTTTTTTTGCT
121693709 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 4 0.10
31 8 0.21
32 21 0.54
33 6 0.15
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.63
Consensus pattern (31 bp):
TTTTTTTTTGCTGGAAATTTTTTGCTGGAAA
Found at i:121693700 original size:14 final size:14
Alignment explanation
Indices: 121693623--121693702 Score: 51
Period size: 15 Copynumber: 5.6 Consensus size: 14
121693613 CGTTCTATTG
*
121693623 TTTTTTTT--TGGT
1 TTTTTTTTGCTGGA
121693635 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGG-A
*
121693650 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG--A
121693665 TTTTTTTTGGTGCTGGA
1 -TTTTTTT--TGCTGGA
*
121693682 -ATTTTTTGCTGGA
1 TTTTTTTTGCTGGA
121693695 TTTTTTTT
1 TTTTTTTT
121693703 TTTGCTTCCC
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
12 8 0.15
13 7 0.13
14 13 0.24
15 14 0.26
16 6 0.11
17 1 0.02
18 1 0.02
19 4 0.07
ACGTcount: A:0.11, C:0.05, G:0.19, T:0.65
Consensus pattern (14 bp):
TTTTTTTTGCTGGA
Found at i:121693705 original size:33 final size:32
Alignment explanation
Indices: 121693634--121693708 Score: 93
Period size: 31 Copynumber: 2.4 Consensus size: 32
121693624 TTTTTTTTGG
*
121693634 TTTTTTTT-TGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
*
121693665 TTTTTTTTGGTGCTGG-AATTTTTTGCTGG-AT
1 TTTTTTTT-GTGCTGGAAATTTTTTGCTGGAAA
*
121693696 TTTTTTTTTTGCT
1 TTTTTTTTGTGCT
121693709 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 4 0.10
31 17 0.44
32 12 0.31
33 6 0.15
ACGTcount: A:0.12, C:0.07, G:0.19, T:0.63
Consensus pattern (32 bp):
TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
Found at i:121694149 original size:35 final size:35
Alignment explanation
Indices: 121694109--121694214 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
121694099 GGGGTGTGTG
*
121694109 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
121694144 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
121694179 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
121694214 A
1 A
121694215 GAGGCAAGTG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:121694999 original size:48 final size:50
Alignment explanation
Indices: 121694923--121695069 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
121694913 ATATGACCTA
**
121694923 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
121694971 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
121695025 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
121695070 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:121695305 original size:147 final size:140
Alignment explanation
Indices: 121695126--121695714 Score: 980
Period size: 147 Copynumber: 4.1 Consensus size: 140
121695116 TCAACTCACC
121695126 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
121695191 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
121695256 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
121695274 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
121695339 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
121695404 CCTCTCGCCA
131 CCTCTCGCAA
*
121695414 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
121695479 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
121695544 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
121695561 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
121695626 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
121695691 CCTCTCGCAA
131 CCTCTCGCAA
*
121695701 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
121695715 CTGTCACTTG
Statistics
Matches: 423, Mismatches: 11, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
140 196 0.46
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 211 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:121695338 original size:70 final size:70
Alignment explanation
Indices: 121695225--121695714 Score: 863
Period size: 70 Copynumber: 6.9 Consensus size: 70
121695215 CATAAATTGA
*
121695225 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
121695290 AACAT
66 AACAT
*
121695295 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
121695360 AACAT
66 AACAT
*
121695365 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
121695430 AACATAAATT
66 AAC----A-T
*
121695440 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
121695505 GAAACAT
64 GAAACAT
*
121695512 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
121695577 AACAT
66 AACAT
121695582 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
121695647 AACAT
66 AACAT
*
121695652 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
121695715 CTGTCACTTG
Statistics
Matches: 403, Mismatches: 10, Indels: 14
0.94 0.02 0.03
Matches are distributed among these distances:
70 333 0.83
72 1 0.00
73 1 0.00
74 1 0.00
75 1 0.00
77 66 0.16
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:121695410 original size:217 final size:217
Alignment explanation
Indices: 121695126--121695714 Score: 1093
Period size: 217 Copynumber: 2.7 Consensus size: 217
121695116 TCAACTCACC
121695126 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
121695191 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
121695256 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
121695321 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
121695344 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
121695409 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
121695474 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
121695539 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
121695561 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
121695626 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
121695684 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
121695715 CTGTCACTTG
Statistics
Matches: 368, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
217 295 0.80
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:121707668 original size:14 final size:14
Alignment explanation
Indices: 121707636--121707679 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
121707626 ATATTTGGTA
* *
121707636 ATAATAATAT-AAA
1 ATAATAATATGTAC
121707649 ATAATAATATGTAC
1 ATAATAATATGTAC
121707663 ATAATAATATGTAC
1 ATAATAATATGTAC
121707677 ATA
1 ATA
121707680 TATATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
13 10 0.36
14 18 0.64
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.34
Consensus pattern (14 bp):
ATAATAATATGTAC
Found at i:121707686 original size:14 final size:14
Alignment explanation
Indices: 121707655--121707697 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
121707645 TAAAATAATA
121707655 ATATGTACATA-AT
1 ATATGTACATATAT
121707668 AATATGTACATATAT
1 -ATATGTACATATAT
* *
121707683 ATATATATATATAT
1 ATATGTACATATAT
121707697 A
1 A
121707698 ATAAAAGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 24 0.92
15 2 0.08
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.42
Consensus pattern (14 bp):
ATATGTACATATAT
Found at i:121708021 original size:2 final size:2
Alignment explanation
Indices: 121708016--121708081 Score: 82
Period size: 2 Copynumber: 34.0 Consensus size: 2
121708006 AACTAATGGC
* * *
121708016 AT AT AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
121708056 AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
121708082 TAGATATGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
1 2 0.04
2 54 0.96
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:121708616 original size:11 final size:12
Alignment explanation
Indices: 121708600--121708636 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
121708590 AGAAAAAAAA
121708600 GGAAGAGAG-AG
1 GGAAGAGAGAAG
121708611 GGAAGAGAGAAG
1 GGAAGAGAGAAG
121708623 GG-AGAGAGAAG
1 GGAAGAGAGAAG
121708634 GGA
1 GGA
121708637 GGGGGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:121708940 original size:14 final size:15
Alignment explanation
Indices: 121708905--121708940 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
121708895 TTTTTTGGTT
121708905 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
121708920 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
121708934 TTTTTTT
1 TTTTTTT
121708941 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:121708940 original size:33 final size:30
Alignment explanation
Indices: 121708903--121708978 Score: 98
Period size: 33 Copynumber: 2.4 Consensus size: 30
121708893 TTTTTTTTGG
*
121708903 TTTTTTTTTGCTGGAAATTTTTTTCTGGAAATT
1 TTTTTTTTTGCTGG-AATTTTTTGCTGG--ATT
*
121708936 TTTTTTTGGTGCTGGAATTTTTTGCTGGATT
1 TTTTTTT-TTGCTGGAATTTTTTGCTGGATT
121708967 TTTTTTTTTGCT
1 TTTTTTTTTGCT
121708979 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 4 0.10
31 10 0.26
33 19 0.49
34 6 0.15
ACGTcount: A:0.12, C:0.07, G:0.18, T:0.63
Consensus pattern (30 bp):
TTTTTTTTTGCTGGAATTTTTTGCTGGATT
Found at i:121708941 original size:15 final size:16
Alignment explanation
Indices: 121708904--121708941 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
121708894 TTTTTTTGGT
121708904 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
121708920 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
121708934 TTTTTTTT
1 TTTTTTTT
121708942 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:121708970 original size:14 final size:15
Alignment explanation
Indices: 121708904--121708972 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 15
121708894 TTTTTTTGGT
121708904 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
121708919 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
121708934 TTTTTTTTTGGTGCTGGAA
1 --TTTTTTT--TGCTGGAA
121708953 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
121708965 TTTTTTTT
1 TTTTTTTT
121708973 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
17 6 0.14
19 3 0.07
20 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:121709780 original size:13 final size:13
Alignment explanation
Indices: 121709762--121709795 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
121709752 CGCTGAGGTA
*
121709762 TTTTCAATTTTTG
1 TTTTCAATTTATG
121709775 TTTTCAATTTATG
1 TTTTCAATTTATG
121709788 TTGTTCAA
1 TT-TTCAA
121709796 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.62
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:121710253 original size:90 final size:89
Alignment explanation
Indices: 121710003--121710340 Score: 334
Period size: 90 Copynumber: 4.0 Consensus size: 89
121709993 CGCTGAGCTA
* * * * *
121710003 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GA
* *** * *
121710068 CACACTGAGGT-ATTTTTTTTTTTAC
64 CACGCTGAGGTAATTTCAATTTCTGC
*
121710093 --TTCAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAAGG-C
1 TTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGAC
* *
121710153 ACGTTAAGGTAATTTCAATTTCTGC
65 ACGCTGAGGTAATTTCAATTTCTGC
121710178 TTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTATATTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
121710243 ACGCTGAGGTAATTTCAATTTCTG-
65 ACGCTGAGGTAATTTCAATTTCTGC
* ** *
121710267 TTGT-AA---A-A------AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
121710321 TGCTGAGGTATTTTCAATTT
66 CGCTGAGGTAATTTCAATTT
121710341 TTGTCTTTCA
Statistics
Matches: 217, Mismatches: 23, Indels: 29
0.81 0.09 0.11
Matches are distributed among these distances:
77 54 0.25
78 7 0.03
84 9 0.04
85 10 0.05
86 36 0.17
87 19 0.09
88 16 0.07
89 11 0.05
90 55 0.25
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (89 bp):
TTTTCAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAATTTCAATTTCTGC
Found at i:121710388 original size:75 final size:75
Alignment explanation
Indices: 121710178--121710815 Score: 599
Period size: 73 Copynumber: 8.2 Consensus size: 75
121710168 CAATTTCTGC
* * * ** *
121710178 TTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTGTCTTTCAAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
121710243 ACGCTGAGGTA
65 ACGCTGAGGTA
* **
121710254 ATTTCAATTTCTGT-TGTAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
1 TTTTCAATTTCTGTCT-T--TCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
*
121710318 ACATGCTGAGGTA
63 ACACGCTGAGGTA
*
121710331 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
*
121710396 TGCTGAGGTA
66 CGCTGAGGTA
* *
121710406 TTTTCAATTTTTGTCTTTCAAAAAAAATATCAACTCCTATTGCGAGAAATGAGTTGAGCCTCAAG
1 TTTTCAATTTCTGTCTTTC--AAAAAA-ATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
*
121710471 ACACGTTGAGGTA
63 ACACGCTGAGGTA
* * * **
121710484 GTTTCAATTTCTGTTCAATTT-ATGTTTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTG-TC--TTTCA-------AAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
* *
121710548 CCTCAGGACACACTGAGGTA
56 CCTCAAGACACGCTGAGGTA
* ** ** *
121710568 TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
121710631 CGCTGAGGTA
66 CGCTGAGGTA
* * * * * *
121710641 TTGTCAATTTTTGTGTTTCAATTTATTTTTCAAAAATTAACTCATATTACGAGAAATAAGTTGAG
1 TTTTCAATTTCTGTCTTTC-A---A------AAAAATCAACTCATATTGCGAGAAATGAGTTGAG
*
121710706 CCTCAGGACACGCTGAGGTA
56 CCTCAAGACACGCTGAGGTA
* ** *
121710726 ATTTCAATTTCTGT-TTGT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGC
1 TTTTCAATTTCTGTCTT-TCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
*
121710788 ACGTTGAGGTA
65 ACGCTGAGGTA
*
121710799 ATTTCAATTTCTG-CTTT
1 TTTTCAATTTCTGTCTTT
121710816 TCAATTTATA
Statistics
Matches: 477, Mismatches: 53, Indels: 68
0.80 0.09 0.11
Matches are distributed among these distances:
72 1 0.00
73 127 0.27
75 76 0.16
76 12 0.03
77 64 0.13
78 67 0.14
79 3 0.01
81 6 0.01
83 1 0.00
84 57 0.12
85 63 0.13
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
CGCTGAGGTA
Found at i:121710575 original size:237 final size:236
Alignment explanation
Indices: 121710178--121711529 Score: 1116
Period size: 245 Copynumber: 5.6 Consensus size: 236
121710168 CAATTTCTGC
* * ** *
121710178 TTTTCAATTTATATTTTTC-AAAAAAAT-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTTCAATTTCT-GTTTTCAAAAAAAATATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
* ** **
121710241 ACACGCTGAGGTAATTTCAATTTCTGTTGTAA--A--AAAAAAAATCAACTCATATTGCGAGAAA
65 ACACGCTGAGGTAATTTCAATTTCTGTT-CAATTATGTTAAAAAATCAACTCATATTGCGAGAGG
* * *
121710302 TGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAA-TT-T-TTGTC-TTTCAAAAAAATCAACT
129 TGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTTCTCTTGTCTTTTCAAAAAAATCAACT
** * *
121710363 CATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTA
194 CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* *
121710406 TTTTCAATTTTTGTCTTTCAAAAAAAATATCAACTCCTATTGCGAGAAATGAGTTGAGCCTCAAG
1 TTTTCAATTTCTGT-TTTCAAAAAAAATATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
* * * *
121710471 ACACGTTGAGGTAGTTTCAATTTCTGTTCAATTTATGTTTTTCAAAAATCAACTTATATTGCGAG
65 ACACGCTGAGGTAATTTCAATTTCTGTTCAA-TTATG---TTAAAAAATCAACTCATATTGCGAG
* *
121710536 AGGTGAGTTGAGCCTC-AGGACACACTGAGGTATTTTCAA-TT-TC-TGT-TTTTC--AAAAATC
126 AGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTAATTTCAATTTCTCTTGTCTTTTCAAAAAAATC
* *
121710594 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA
190 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* * * *
121710641 TTGTCAATTTTTGTGTTTCAATTTATTTTTCAAAAAT-T-AACTCATATTACGAGAAATAAGTTG
1 TTTTCAATTTCTGT-TTTCAA---A------AAAAATATCAACTCATATTGCGAGAAATGAGTTG
*
121710704 AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-----TT-TG-TAAAAAATCAACTCATATT
56 AGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAATTATGTTAAAAAATCAACTCATATT
* *
121710762 GCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATTTCAATTTCTGCTTTTCAATTTATAT
121 GCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTTCT-CTTGTC---------
121710827 TTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
176 TTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* * *
121710889 ATTTCAATTTCTGTTGTC--AAAAAA-ATCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGA
1 TTTTCAATTTCTGTTTTCAAAAAAAATATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
* * * *
121710951 CATGCTGAGGTATTTTCAATTTTTG-TC---T-T-TCAAAAAATCAACTCATATTGCGAGAGGTG
66 CACGCTGAGGTAATTTCAATTTCTGTTCAATTATGTTAAAAAATCAACTCATATTGCGAGAGGTG
* *
121711010 AGTTGAGCCTCAAGGCACGTTGAGGTAATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAA
131 AGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTTCT-CTTGTC---------TTTTC-----
121711075 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
181 -AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* * *
121711132 ATTTCAATTTCTGTTGT-AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
1 TTTTCAATTTCTGTTTTCAAAAAAAATATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
* * * * * *
121711196 CATGCTGAGGTATTTTCAATTTTTG-TC---T-T-TCAAAAAATCAACTCATACTGCGAGAGGTA
66 CACGCTGAGGTAATTTCAATTTCTGTTCAATTATGTTAAAAAATCAACTCATATTGCGAGAGGTG
* * * *
121711255 AGTTGAGCCTCAAGGCACGTTGAGTTAATTTCAATTTCTGCTTTTAAATTTATATTTTTCAAAAA
131 AGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTTCT-C--------TTGT-CTTTTCAAAAA
* *
121711320 AATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGTTGAGGTA
186 AA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* * * *
121711372 ATTTCAATTTCTGTTGTCAAATAAAAAATAAAAAATCAACTCGTATTGCGAGAGACT-AGTTGAG
1 TTTTCAATTTCTGTTTTC-AA-AAAAAAT-----ATCAACTCATATTGCGAGA-AATGAGTTGAG
* * ** * *
121711436 CCTCAGGTCACACGCCGAGGTACCTTCAATTTCTGTTTTTCAATTTTTGCCTTTCAAAAAAATCG
58 CCTCAAG--ACACGCTGAGGTAATTTCAATTTCTG---TTCAA-TTATG---TT--AAAAAATCA
121711501 ACTCATATTGCGAGAGGTGAGTTGAGCCT
112 ACTCATATTGCGAGAGGTGAGTTGAGCCT
121711530 TGGCTCACAC
Statistics
Matches: 960, Mismatches: 73, Indels: 145
0.81 0.06 0.12
Matches are distributed among these distances:
227 1 0.00
228 15 0.02
229 10 0.01
230 58 0.06
231 54 0.06
232 6 0.01
233 1 0.00
234 1 0.00
235 71 0.07
236 10 0.01
237 115 0.12
238 91 0.09
239 7 0.01
240 64 0.07
242 57 0.06
243 73 0.08
244 19 0.02
245 144 0.15
247 8 0.01
248 89 0.09
249 2 0.00
250 21 0.02
253 3 0.00
254 2 0.00
258 1 0.00
259 1 0.00
263 1 0.00
265 35 0.04
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (236 bp):
TTTTCAATTTCTGTTTTCAAAAAAAATATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
CACGCTGAGGTAATTTCAATTTCTGTTCAATTATGTTAAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTTCTCTTGTCTTTTCAAAAAAATCAACTCA
TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
Found at i:121710722 original size:158 final size:158
Alignment explanation
Indices: 121710352--121711057 Score: 779
Period size: 158 Copynumber: 4.5 Consensus size: 158
121710342 TGTCTTTCAA
* * * *
121710352 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* *
121710417 TGTCTT-TCAAAAAAAATATCAACTCCTATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
66 TGT-TTGTC---AAAAA-ATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
121710481 GTAGTTTCAA--TTTCTG-TTCAATTTATGTTTTTC
126 GTA-TTTCAATTTTTGTGTTTCAATTTA--TTTTTC
* ** * *
121710514 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* ** ** *
121710579 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT
66 TGTTTGTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATT
121710643 GTCAATTTTTGTGTTTCAATTTATTTTTC
131 -TCAATTTTTGTGTTTCAATTTATTTTTC
* * *
121710672 AAAAATTAACTCATATTACGAGAAATAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
** * *
121710737 TGTTTGT-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAAT
66 TGTTTGTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-AT
*
121710801 TTCAATTTCTGCT-TTTCAATTTATATTTTTC
130 TTCAATTTTTG-TGTTTCAA-TT-TATTTTTC
**
121710832 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 --AAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
* *
121710897 TTCTG-TTGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACATGCTGAGG
63 TTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
121710961 TATTTTCAATTTTTGTCTTTC-----A------
127 TA-TTTCAATTTTTGTGTTTCAATTTATTTTTC
** *
121710983 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGTTGAGGTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTCAATTT
121711047 CTGCTTT-TCAA
65 CTG-TTTGTCAA
121711058 TTTATATTTT
Statistics
Matches: 483, Mismatches: 41, Indels: 54
0.84 0.07 0.09
Matches are distributed among these distances:
148 59 0.12
149 10 0.02
150 2 0.00
156 2 0.00
157 48 0.10
158 138 0.29
159 11 0.02
160 17 0.04
161 2 0.00
162 72 0.15
163 59 0.12
164 63 0.13
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (158 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTTGTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATT
TCAATTTTTGTGTTTCAATTTATTTTTC
Found at i:121711056 original size:74 final size:74
Alignment explanation
Indices: 121710827--121711057 Score: 331
Period size: 74 Copynumber: 3.1 Consensus size: 74
121710817 CAATTTATAT
121710827 TTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAAT
1 TTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACGCTGAGGTAAT
121710891 TTCAATTTCTG
64 TTCAATTTCTG
* ** * * * *
121710902 TTGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACATGCTGAGGTATTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTT
*
121710967 CAATTTTTG
66 CAATTTCTG
*
121710976 TCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATT
1 T-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATT
121711040 TCAATTTCTG
65 TCAATTTCTG
121711050 CTTTTCAA
1 -TTTTCAA
121711058 TTTATATTTT
Statistics
Matches: 135, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
74 117 0.87
75 18 0.13
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (74 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTT
CAATTTCTG
Found at i:121711070 original size:88 final size:89
Alignment explanation
Indices: 121710963--121711144 Score: 251
Period size: 95 Copynumber: 2.0 Consensus size: 89
121710953 TGCTGAGGTA
* *
121710963 TTTTCAATTTTTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-C
1 TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGAC
*
121711026 ACGTTGAGGTAATTTCAATTTCTGC
65 ACGCTGAGGTAATTTCAATTTCTGC
*
121711051 TTTTCAATTTATATTTTTCAAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TTTTCAATTTATATCTTTC------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
121711116 AGGACACGCTGAGGTAATTTCAATTTCTG
60 AGGACACGCTGAGGTAATTTCAATTTCTG
121711145 TTGTAAAAAA
Statistics
Matches: 82, Mismatches: 4, Indels: 9
0.86 0.04 0.09
Matches are distributed among these distances:
88 16 0.20
94 3 0.04
95 63 0.77
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (89 bp):
TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAATTTCAATTTCTGC
Found at i:121711165 original size:76 final size:77
Alignment explanation
Indices: 121711072--121711472 Score: 348
Period size: 76 Copynumber: 5.0 Consensus size: 77
121711062 TATTTTTCAA
121711072 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
121711137 AATTTCTGTTGT
66 AATTTCTGTTGT
** * * *
121711149 -AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTC
1 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
121711213 AATTTTTGTCT-T
66 AATTTCTGT-TGT
** * * * *
121711225 ---TCAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGG-CACGTTGAGTTAATTT
1 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTAATTT
*
121711286 CAATTTCTGCTTTT
65 CAATTTCTG-TTGT
* *
121711300 AAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGT
1 -AA---A-A------AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
121711365 TGAGGTAATTTCAATTTCTGTTGTCAAAT
54 TGAGGTAATTTCAATTTCTGTTG-----T
* * *
121711394 AAAAAATAAAAAATCAACTCGTATTGCGAGAGACT-AGTTGAGCCTCAGGTCACACGCCGAGGTA
1 -AAAAA-AAAAAATCAACTCATATTGCGAGAG-GTGAGTTGAGCCTCAGG--ACACGCTGAGGTA
**
121711458 CCTTCAATTTCTGTT
61 ATTTCAATTTCTGTT
121711473 TTTCAATTTT
Statistics
Matches: 263, Mismatches: 32, Indels: 49
0.76 0.09 0.14
Matches are distributed among these distances:
74 56 0.21
75 4 0.02
76 68 0.26
77 1 0.00
84 33 0.13
85 7 0.03
86 23 0.09
89 11 0.04
90 55 0.21
91 1 0.00
94 4 0.02
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (77 bp):
AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTCTGTTGT
Found at i:121711250 original size:245 final size:240
Alignment explanation
Indices: 121710672--121711400 Score: 1214
Period size: 245 Copynumber: 3.0 Consensus size: 240
121710662 TTTATTTTTC
* * * * * * *
121710672 AAAAATTAACTCATATTACGAGAAATAAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
121710737 TGT-TTGT-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAA
66 TGTCTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAA
121710800 TTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
130 TTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
*
121710865 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGT--CAA
195 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAA
*
121710909 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
121710974 TGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAAT
66 TGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAAT
*
121711039 TTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAAAAAAAATCAACTCATATTGCGAGAGGT
131 TTCAATTTCTGCTTTTCAATTTATATTTTTC-----AAAAAAATTCAACTCATATTGCGAGAGGT
121711104 GAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAA
191 GAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAA
121711154 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
* * *
121711219 TGTCTTTCAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGGCACGTTGAGTTAAT
66 TGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAAT
*
121711284 TTCAATTTCTGCTTTTAAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
131 TTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
* * *
121711349 GAGCCTCAGGACATGTTGAGGTAATTTCAATTTCTGTTGTCAAATA
196 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGT-AAAAA
121711395 AAAAAT
1 AAAAAT
121711401 AAAAAATCAA
Statistics
Matches: 463, Mismatches: 19, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
237 61 0.13
238 90 0.19
240 71 0.15
241 10 0.02
243 73 0.16
245 158 0.34
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (240 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
TGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAAT
TTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTAAAAA
Found at i:121711367 original size:90 final size:87
Alignment explanation
Indices: 121711223--121711565 Score: 295
Period size: 90 Copynumber: 3.9 Consensus size: 87
121711213 AATTTTTGTC
* * *
121711223 TTTCAAAAAATCAACTCATACTGCGAGAGGTAAGTTGAGCCTCAAGG-CACGTTGAGTTAATTTC
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGTTGAGGTAATTTC
**
121711287 AATTTCTGCTTTTAAATTTATATT
65 AATTTCTG-TTTTAAATTTATAAA
*
121711311 TTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGTTGAGGTAATTT
1 TTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTT
*
121711376 CAATTTCTGTTGTCAAA--TA-AAA
64 CAATTTCTGTT-TTAAATTTATAAA
** * * ** **
121711398 AAT-AAAAAATCAACTCGTATTGCGAGAGACT-AGTTGAGCCTCAGGTCACACGCCGAGGTACCT
1 TTTCAAAAAATCAACTCATATTGCGAGAG-GTGAGTTGAGCCTCAGG--ACACGTTGAGGTAATT
* * ***
121711461 TCAATTTCTGTTTTTCAATTTTTGCC
63 TCAATTTCTG-TTTTAAATTTATAAA
* * * * *
121711487 TTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGCTATT
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGTTGAGGTAAT
121711551 TTCAATTTCTGTTTT
62 TTCAATTTCTGTTTT
121711566 TATTGTCTAT
Statistics
Matches: 208, Mismatches: 32, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
84 32 0.15
85 7 0.03
86 24 0.12
87 4 0.02
88 7 0.03
89 12 0.06
90 65 0.31
91 57 0.27
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (87 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCA
ATTTCTGTTTTAAATTTATAAA
Found at i:121711516 original size:91 final size:91
Alignment explanation
Indices: 121711401--121711566 Score: 228
Period size: 91 Copynumber: 1.8 Consensus size: 91
121711391 AATAAAAAAT
* *
121711401 AAAAAATCAACTCGTATTGCGAGAGACT-AGTTGAGCCTCAGG-TCACACGCCGAGGTACCTTCA
1 AAAAAATCAACTCATATTGCGAGAG-CTGAGTTGAGCCT-AGGCTCACACGCCGAGCTACCTTCA
121711464 ATTTCTGTTTTTCAATTTTTGCCTTTCA
64 ATTTCTGTTTTTCAATTTTTGCCTTTCA
* * * * **
121711492 AAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTAGGCTCACACGCCGAGCTACCTTCAAT
121711557 TTCTGTTTTT
66 TTCTGTTTTT
121711567 ATTGTCTATT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
90 3 0.05
91 62 0.95
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (91 bp):
AAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTAGGCTCACACGCCGAGCTACCTTCAAT
TTCTGTTTTTCAATTTTTGCCTTTCA
Found at i:121712270 original size:26 final size:27
Alignment explanation
Indices: 121712226--121712276 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
121712216 CCCCCCCAAA
121712226 AAAAACCTAACCCCTCCAAAAAAAAAG
1 AAAAACCTAACCCCTCCAAAAAAAAAG
121712253 AAAAACCTAACCCC-CCAAAAAAAA
1 AAAAACCTAACCCCTCCAAAAAAAA
121712277 CCAAGAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.61, C:0.31, G:0.02, T:0.06
Consensus pattern (27 bp):
AAAAACCTAACCCCTCCAAAAAAAAAG
Found at i:121712289 original size:28 final size:27
Alignment explanation
Indices: 121712226--121712286 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
121712216 CCCCCCCAAA
*
121712226 AAAAACCTAACCCCTCCAAAAAAAAAG
1 AAAAACCTAACCCCTCCAAAAAAAAAC
*
121712253 AAAAACCTAACCCC-CCAAAAAAAACC
1 AAAAACCTAACCCCTCCAAAAAAAAAC
121712279 AAGAAACC
1 AA-AAACC
121712287 CTAGCCACCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 12 0.39
27 19 0.61
ACGTcount: A:0.59, C:0.33, G:0.03, T:0.05
Consensus pattern (27 bp):
AAAAACCTAACCCCTCCAAAAAAAAAC
Found at i:121713085 original size:15 final size:15
Alignment explanation
Indices: 121713062--121713104 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
121713052 TTTCTAATAC
121713062 GTATATATATATGTAT
1 GTATATATATAT-TAT
*
121713078 -TTTATATATATTAT
1 GTATATATATATTAT
121713092 GTATATATATATT
1 GTATATATATATT
121713105 TTTAATGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 3 0.12
15 21 0.88
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (15 bp):
GTATATATATATTAT
Found at i:121713096 original size:13 final size:15
Alignment explanation
Indices: 121713065--121713101 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
121713055 CTAATACGTA
*
121713065 TATATATATGTATTT
1 TATATATATGTATTG
121713080 TATATATAT-TA-TG
1 TATATATATGTATTG
121713093 TATATATAT
1 TATATATAT
121713102 ATTTTTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
TATATATATGTATTG
Found at i:121713408 original size:37 final size:37
Alignment explanation
Indices: 121713366--121713467 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
121713356 CTAATATTTT
121713366 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
121713403 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
121713446 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
121713468 CCAAGTATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:121718040 original size:2 final size:2
Alignment explanation
Indices: 121718033--121718060 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
121718023 AATTACAAGA
121718033 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121718061 TCATTTAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121722225 original size:24 final size:24
Alignment explanation
Indices: 121722197--121722248 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
121722187 TTAGCAAGTC
*
121722197 AAATAAACTATGCTAATAAATACT
1 AAATAAACTATACTAATAAATACT
* *
121722221 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
121722245 AAAT
1 AAAT
121722249 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:121724782 original size:24 final size:23
Alignment explanation
Indices: 121724754--121724816 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 23
121724744 CAGTAGGAAT
*
121724754 TAAATTATATATTTTTATGATAA
1 TAAAATATATATTTTTATGATAA
* **
121724777 TAAAATATA-A-TTTTATTATTC
1 TAAAATATATATTTTTATGATAA
*
121724798 TAATAGTATATATTTTTAT
1 TAA-AATATATATTTTTAT
121724817 AATTTTTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 11 0.34
22 6 0.19
23 9 0.28
24 6 0.19
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (23 bp):
TAAAATATATATTTTTATGATAA
Done.