Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 398 of 425
Found at i:121725914 original size:17 final size:18
Alignment explanation
Indices: 121725892--121725926 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
121725882 GATATGATAC
*
121725892 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
121725909 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
121725927 CCAGAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:121726273 original size:35 final size:37
Alignment explanation
Indices: 121726210--121726307 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
121726200 ATTATAAAAT
121726210 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
121726246 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
121726281 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
121726308 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:121726315 original size:17 final size:19
Alignment explanation
Indices: 121726217--121726307 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
121726207 AATCATATCT
121726217 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
121726236 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
121726254 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
121726271 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
121726290 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
121726308 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:121726464 original size:21 final size:20
Alignment explanation
Indices: 121726426--121726465 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
121726416 TTGGACTTTG
**
121726426 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
121726446 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
121726466 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:121726712 original size:45 final size:45
Alignment explanation
Indices: 121726657--121726930 Score: 241
Period size: 45 Copynumber: 6.1 Consensus size: 45
121726647 GGAAGGCGAT
* * * * * *
121726657 ATCTGCTATCTTTGATCTGCTCCCCATTTAATACAGAGACGCAAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * **
121726702 ATCTGTTATCTTCGATATGCTTCTTGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
121726747 ATCTGCT-TCTTCAATCTGCTTCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
121726791 ATCTGTTATCTCCGATTTGTTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
121726836 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
* *
121726881 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
121726928 ATC
1 ATC
121726931 ATCTTGGATC
Statistics
Matches: 179, Mismatches: 41, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
43 6 0.03
44 44 0.25
45 98 0.55
46 1 0.01
47 19 0.11
48 5 0.03
49 6 0.03
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:121726793 original size:89 final size:89
Alignment explanation
Indices: 121726657--121726858 Score: 253
Period size: 89 Copynumber: 2.2 Consensus size: 89
121726647 GGAAGGCGAT
* * * *
121726657 ATCTGCTATCTTTGATCTGCTCCCCATTTAATACAGAGACGCAAAATCTGTTATCTTCGATATGC
1 ATCTGCT-TCTTCGATCTGCTTCCCATCTAATACAGAGACGCAAAATCTGTTATCTCCGATATG-
**
121726722 TT-CTTGTCTAATACAGAGATGCCAA
64 TTCCCCGTCTAATACAGAGATGCCAA
* * * * *
121726747 ATCTGCTTCTTCAATCTGCTTCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGTT
1 ATCTGCTTCTTCGATCTGCTTCCCATCTAATACAGAGACGCAAAATCTGTTATCTCCGATATGTT
121726812 CCCCGTCTAATACAGAGATGCCAA
66 CCCCGTCTAATACAGAGATGCCAA
* *
121726836 ATCTGTCATCTTGGATCTGCTTC
1 ATCTG-CTTCTTCGATCTGCTTC
121726859 GATGTAAACA
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
88 2 0.02
89 73 0.76
90 21 0.22
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.35
Consensus pattern (89 bp):
ATCTGCTTCTTCGATCTGCTTCCCATCTAATACAGAGACGCAAAATCTGTTATCTCCGATATGTT
CCCCGTCTAATACAGAGATGCCAA
Found at i:121727001 original size:78 final size:78
Alignment explanation
Indices: 121726870--121727164 Score: 450
Period size: 78 Copynumber: 3.8 Consensus size: 78
121726860 ATGTAAACAC
*
121726870 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
121726935 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
121726948 ATGAAGGTCCA-ATCTG-TCATGTCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATTAT
1 ATGAAGGT-CAGATCTGCT-ATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCAT
121727011 CTTGGATCTGCTTCA
64 CTTGGATCTGCTTCA
* * *
121727026 ATGAAGGTCAGATCTGCTGTATCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
121727091 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * **
121727104 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
121727165 TGTTTCTTCG
Statistics
Matches: 195, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
77 3 0.02
78 189 0.97
79 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:121735426 original size:17 final size:18
Alignment explanation
Indices: 121735404--121735438 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
121735394 GATATGATAC
*
121735404 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
121735421 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
121735439 CCGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:121735736 original size:23 final size:22
Alignment explanation
Indices: 121735693--121735750 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
121735683 AAAAGGTATC
* *
121735693 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
121735714 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
121735737 TGCATATCATATCT
1 TACAAATCATATCT
121735751 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:121735768 original size:18 final size:19
Alignment explanation
Indices: 121735729--121735818 Score: 143
Period size: 18 Copynumber: 4.9 Consensus size: 19
121735719 AATCATATCT
121735729 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
121735748 TCTAAGATTGCA-ATTATA
1 TCTAAGATTGCATATCATA
121735766 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
121735783 TCTAAG-TTGCATATCATA
1 TCTAAGATTGCATATCATA
121735801 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
121735819 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
16 3 0.05
17 11 0.17
18 28 0.43
19 23 0.35
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:121735785 original size:35 final size:36
Alignment explanation
Indices: 121735722--121735818 Score: 130
Period size: 35 Copynumber: 2.7 Consensus size: 36
121735712 ATTACAAAAT
121735722 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAG-TTG
*
121735758 CA-ATTATATCTAAGATTG-TATCATATCTAAGTTG
1 CATATCATATCTAAGATTGATATCATATCTAAGTTG
121735792 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
121735819 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
34 5 0.09
35 30 0.56
36 3 0.06
37 16 0.30
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (36 bp):
CATATCATATCTAAGATTGATATCATATCTAAGTTG
Found at i:121736704 original size:18 final size:18
Alignment explanation
Indices: 121736681--121736720 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
121736671 AATAAATAAA
121736681 ATCTTGATTTTTAGTAAC
1 ATCTTGATTTTTAGTAAC
121736699 ATCTTGATTTTTAGTAAC
1 ATCTTGATTTTTAGTAAC
121736717 ATCT
1 ATCT
121736721 GTCAAGTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (18 bp):
ATCTTGATTTTTAGTAAC
Found at i:121742086 original size:44 final size:45
Alignment explanation
Indices: 121742029--121742121 Score: 120
Period size: 46 Copynumber: 2.1 Consensus size: 45
121742019 TACAATATTT
*
121742029 ATTCCATTTAACCAAACACA-AGAA-TACT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACA-ATA-AATTACTGATTACAGCTCTATTCC
*
121742073 ATTCCATTCAACCAAATAATTAAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAA-TAAATTACTGATTACAGCTCTATTCC
121742119 ATT
1 ATT
121742122 ACAGCCATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
43 1 0.02
44 18 0.42
45 5 0.12
46 19 0.44
ACGTcount: A:0.38, C:0.25, G:0.04, T:0.33
Consensus pattern (45 bp):
ATTCCATTCAACCAAACAATAAATTACTGATTACAGCTCTATTCC
Found at i:121742124 original size:16 final size:15
Alignment explanation
Indices: 121742103--121742157 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
121742093 TAAATTACTG
121742103 ATTACAGCTCTATTCC
1 ATTACAGC-CTATTCC
*
121742119 ATTACAGCCATATTCA
1 ATTACAGCC-TATTCC
*
121742135 ATTACAACCCTATTCC
1 ATTAC-AGCCTATTCC
121742151 ATTACAG
1 ATTACAG
121742158 TGAACAAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
15 2 0.06
16 28 0.85
17 3 0.09
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (15 bp):
ATTACAGCCTATTCC
Found at i:121745127 original size:2 final size:2
Alignment explanation
Indices: 121745120--121745145 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
121745110 GAAAGGAAAC
121745120 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
121745146 GTATTGATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:121745522 original size:25 final size:27
Alignment explanation
Indices: 121745470--121745546 Score: 73
Period size: 27 Copynumber: 2.7 Consensus size: 27
121745460 TGTATAGTAG
* * *
121745470 TTTAAAATAAATAATATATGGAAAAAGAAC
1 TTTAAAATAAATAACATAT---AAGAGAGC
*
121745500 TTTAAAATAAATAACATATAAGAGAGT
1 TTTAAAATAAATAACATATAAGAGAGC
* *
121745527 TTTAACATAAATAATATATA
1 TTTAAAATAAATAACATATA
121745547 TATATATAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
27 23 0.56
30 18 0.44
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTAAAATAAATAACATATAAGAGAGC
Found at i:121745635 original size:20 final size:20
Alignment explanation
Indices: 121745596--121745635 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
121745586 AATTTTTTAG
*
121745596 AAATAAATAAATGAATAAGT
1 AAATAAATAAATGAACAAGT
* *
121745616 AAATAGATAAATGAGCAAGT
1 AAATAAATAAATGAACAAGT
121745636 TTAGCAAACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.60, C:0.03, G:0.15, T:0.23
Consensus pattern (20 bp):
AAATAAATAAATGAACAAGT
Found at i:121749628 original size:18 final size:19
Alignment explanation
Indices: 121749605--121749641 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
121749595 GGTATAATAC
*
121749605 TAAAAT-TATTAAAAAAAT
1 TAAAATATATAAAAAAAAT
121749623 TAAAATATATAAAAAAAAT
1 TAAAATATATAAAAAAAAT
121749642 CTGGGAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
TAAAATATATAAAAAAAAT
Found at i:121750131 original size:32 final size:32
Alignment explanation
Indices: 121750095--121750158 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
121750085 TGTATGCATT
121750095 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
*
121750127 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
121750159 CGATAAGCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGAATGATGGGCA
Found at i:121752981 original size:18 final size:19
Alignment explanation
Indices: 121752942--121752996 Score: 94
Period size: 18 Copynumber: 2.9 Consensus size: 19
121752932 AATCATATCT
*
121752942 TCTAAGATTGCATATTATA
1 TCTAAGATTGCATATCATA
121752961 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
121752979 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
121752997 TGAATATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 17 0.50
19 17 0.50
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:121753417 original size:45 final size:45
Alignment explanation
Indices: 121753366--121753619 Score: 237
Period size: 45 Copynumber: 5.6 Consensus size: 45
121753356 ATTTGATTGT
* * *
121753366 TCCCCGTCTAATATAGAGACGCCAAATCTGTTATCTTCGATCTAC
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTGC
* * ** *
121753411 TCCCCGTCTAATATAGAGAAGCCAAATCTACT-TCTTCAATCTGC
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTGC
* * *
121753455 TTCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGC
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTGC
* * *
121753500 TCCCCGTCTAATACAGAGATACCAAATCTGTCATCTTGGATCTGC
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTGC
* * * * * * * *
121753545 T--TCGATGTAA-ACACATGAAGGTCAGATCTACTATGTCTTCGATCTGC
1 TCCCCG-TCTAATACAGA-G-ATGCCAAATCT-GT-TATCTTCGATCTGC
121753592 TCCCCGTCTAATACAGAGATGCCAAATC
1 TCCCCGTCTAATACAGAGATGCCAAATC
121753620 ATCTTGGATT
Statistics
Matches: 164, Mismatches: 36, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
43 6 0.04
44 42 0.26
45 85 0.52
46 1 0.01
47 19 0.12
48 5 0.03
49 6 0.04
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (45 bp):
TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTGC
Found at i:121753688 original size:78 final size:78
Alignment explanation
Indices: 121753559--121753853 Score: 466
Period size: 78 Copynumber: 3.8 Consensus size: 78
121753549 ATGTAAACAC
*
121753559 ATGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
121753624 TGGATTTGCTTCA
66 TGGATCTGCTTCA
* *
121753637 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
121753701 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
121753715 ATGAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
121753780 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * **
121753793 ATGAAGGTGAGATCTTCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
121753854 TGTTTCTTCG
Statistics
Matches: 201, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
77 2 0.01
78 197 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:121765591 original size:17 final size:18
Alignment explanation
Indices: 121765569--121765603 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
121765559 GATATGATAC
*
121765569 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
121765586 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
121765604 CTTGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:121765900 original size:23 final size:22
Alignment explanation
Indices: 121765857--121765914 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
121765847 AAAAGGTATC
* *
121765857 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
121765878 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
121765901 TGCATATCATATCT
1 TACAAATCATATCT
121765915 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:121765932 original size:18 final size:19
Alignment explanation
Indices: 121765893--121765982 Score: 143
Period size: 18 Copynumber: 4.9 Consensus size: 19
121765883 AATCATATCT
121765893 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
121765912 TCTAAGATTGCA-ATTATA
1 TCTAAGATTGCATATCATA
121765930 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
121765947 TCTAAG-TTGCATATCATA
1 TCTAAGATTGCATATCATA
121765965 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
121765983 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
16 3 0.05
17 11 0.17
18 28 0.43
19 23 0.35
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:121765949 original size:35 final size:36
Alignment explanation
Indices: 121765886--121765982 Score: 130
Period size: 35 Copynumber: 2.7 Consensus size: 36
121765876 ATTACAAAAT
121765886 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAG-TTG
*
121765922 CA-ATTATATCTAAGATTG-TATCATATCTAAGTTG
1 CATATCATATCTAAGATTGATATCATATCTAAGTTG
121765956 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
121765983 TGAAGATTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
34 5 0.09
35 30 0.56
36 3 0.06
37 16 0.30
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (36 bp):
CATATCATATCTAAGATTGATATCATATCTAAGTTG
Found at i:121766136 original size:18 final size:18
Alignment explanation
Indices: 121766103--121766137 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
121766093 GGACTTCGTT
**
121766103 TTTTTTTTGGGTTTATTA
1 TTTTTTTTGGACTTATTA
121766121 TTTTTTTTGGACTTATT
1 TTTTTTTTGGACTTATT
121766138 TCTGGGCCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.03, G:0.14, T:0.71
Consensus pattern (18 bp):
TTTTTTTTGGACTTATTA
Found at i:121773724 original size:2 final size:2
Alignment explanation
Indices: 121773717--121773750 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
121773707 ACAATAATAC
* *
121773717 TA TA TA TA AA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121773751 ATAGAAATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:121774115 original size:3 final size:3
Alignment explanation
Indices: 121774102--121774184 Score: 57
Period size: 3 Copynumber: 27.3 Consensus size: 3
121774092 AATAGGGCAT
**
121774102 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
121774149 ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
121774185 AACAAAGCTC
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
2 8 0.13
3 45 0.71
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:121774124 original size:12 final size:12
Alignment explanation
Indices: 121774102--121774181 Score: 67
Period size: 12 Copynumber: 6.8 Consensus size: 12
121774092 AATAGGGCAT
121774102 ATAATAT-AATA
1 ATAATATAAATA
121774113 ATAATATAAATA
1 ATAATATAAATA
*
121774125 ATAATATATACATG
1 ATAATATA-A-ATA
**
121774139 AGGA-AT-AATA
1 ATAATATAAATA
121774149 ATAATATAAATA
1 ATAATATAAATA
* *
121774161 ATAGTAAAAATA
1 ATAATATAAATA
*
121774173 ATAAAATAA
1 ATAATATAA
121774182 TAAAACAAAG
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
10 4 0.08
11 10 0.19
12 32 0.60
13 3 0.06
14 4 0.08
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:121774134 original size:30 final size:32
Alignment explanation
Indices: 121774100--121774163 Score: 78
Period size: 36 Copynumber: 1.9 Consensus size: 32
121774090 TGAATAGGGC
121774100 ATATA-AT-ATAATAATAATATAAATAATAAT
1 ATATACATGATAATAATAATATAAATAATAAT
121774130 ATATACATGAGGAATAATAATAATATAAATAATA
1 ATATACAT---G-ATAATAATAATATAAATAATA
121774164 GTAAAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
30 5 0.18
31 2 0.07
36 21 0.75
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (32 bp):
ATATACATGATAATAATAATATAAATAATAAT
Found at i:121774528 original size:25 final size:25
Alignment explanation
Indices: 121774481--121774529 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
121774471 CAAAAACTGC
*
121774481 CTTTCCAAGAAACAAAAATAACCTT
1 CTTTCCAAAAAACAAAAATAACCTT
121774506 CTTTCCAAAAAAACAAAAA-AACCT
1 CTTTCC-AAAAAACAAAAATAACCT
121774530 CCTCCAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.53, C:0.24, G:0.02, T:0.20
Consensus pattern (25 bp):
CTTTCCAAAAAACAAAAATAACCTT
Found at i:121774540 original size:20 final size:23
Alignment explanation
Indices: 121774515--121774561 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
121774505 TCTTTCCAAA
121774515 AAAACAAA-AA-AA-CCTCCTCC
1 AAAACAAAGAACAATCCTCCTCC
*
121774535 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAATCCTCCTCC
121774558 AAAA
1 AAAA
121774562 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 2 0.09
22 2 0.09
23 11 0.48
ACGTcount: A:0.55, C:0.30, G:0.02, T:0.13
Consensus pattern (23 bp):
AAAACAAAGAACAATCCTCCTCC
Found at i:121774680 original size:21 final size:21
Alignment explanation
Indices: 121774642--121774698 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
121774632 TGGGGTGGTT
121774642 TAGGTGGCCAAGGGTGGTGGAG
1 TAGGTGGCCAA-GGTGGTGGAG
*
121774664 TTGGTGGCCAAGGTGGTGGAG
1 TAGGTGGCCAAGGTGGTGGAG
121774685 TAGGTGGCCAAGGT
1 TAGGTGGCCAAGGT
121774699 TTTTATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
21 23 0.70
22 10 0.30
ACGTcount: A:0.18, C:0.11, G:0.51, T:0.21
Consensus pattern (21 bp):
TAGGTGGCCAAGGTGGTGGAG
Found at i:121775080 original size:44 final size:44
Alignment explanation
Indices: 121775005--121775861 Score: 553
Period size: 44 Copynumber: 19.4 Consensus size: 44
121774995 GGCGATATCC
* * * * * *
121775005 GCTATCTTTGATCTGTTTCAACTGTAAGCACAGGAATGTCAGATTT
1 GCTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGTCAAATCT
* *
121775051 GCTATCTTCGATCCGTTCCCTATAAGCACAGGGATGCCAAATCT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCT
* * * * *
121775095 GTTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAATCT
* * * * *
121775139 GATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATG-C-CATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT
** * * * * *
121775182 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCT
*
121775227 GCTATCTTCGAT-TCGTTCCCTATAAGCACAGGGATGCCAAATCT
1 GCTATCTTCGATCT-GTTCCCTATAAGCACAGGGATGTCAAATCT
* * * * *
121775271 GATGTTTTC-AACTTGTTCCCTATAAGCACAGGGATG-C-CATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT
** * ** * * *
121775314 GAAATCTTTGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCT
* *
121775359 GCTATCTTCGATTTGTTCCCTATAAGCACAGGGATGCCAAATCT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCT
* * ** * *
121775403 GATGT-TTTTAACTTGTTCCCTATAAGCACAGGGATG-C-CATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT
** * * * * * *
121775446 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCAGATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCT
* **
121775491 GCTATCTTCGATTTGTTCCCTATAAGCACAGGGATACCAAATCT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCT
* * * * *
121775535 GCTGTTTTC-AACTTGTTCCCTATAAGCACAGAGATG-C-CATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT
*** * * * * *
121775578 AAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCT
121775623 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCT
* * * *
121775667 ACTATCTTTGATCCGTTCCCTATAAGCACAGGGATGCCAAATCT
1 GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCT
* * * * *
121775711 GTTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCAAATCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAATCT
* * * * * *
121775755 GATGTTTTC-AACTTGTTCTCTATAAGCACAGGGATG-C-CATGCT
1 GCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT
*** * * * * *
121775798 AAAATCTTGGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCT
1 GCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCT
*
121775843 GCTATCTTCGGTCTGTTCC
1 GCTATCTTCGATCTGTTCC
121775862 TCTGCAACTT
Statistics
Matches: 640, Mismatches: 139, Indels: 66
0.76 0.16 0.08
Matches are distributed among these distances:
42 10 0.02
43 55 0.09
44 479 0.75
45 73 0.11
46 23 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (44 bp):
GCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCT
Found at i:121775755 original size:132 final size:132
Alignment explanation
Indices: 121775108--121775705 Score: 1004
Period size: 132 Copynumber: 4.5 Consensus size: 132
121775098 GTTTTCAACT
121775108 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
121775173 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
121775238 T-
131 TC
121775239 TCGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGG
1 T-GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGG
*
121775304 ATGCCATGCTGAAATCTTTGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
65 ATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
*
121775369 ATT
130 ATC
*
121775372 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTTAACTTGTTCCCTATAAGCACAGGGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
*
121775437 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATATCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
*
121775502 TT
131 TC
* * *
121775504 TGTTCCCTATAAGCACAGGGATACCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGAGA
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
* * *
121775569 TGCCATGCTAAAATCTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGA
66 TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
121775634 TC
131 TC
* * * * *
121775636 TGTTCCCTATAAGCACAGGGATGTCAAATCT-ACTATCTTTGATC-CGTTCCCTATAAGCACAGG
1 TGTTCCCTATAAGCACAGGGATGCCAAATCTGA-TGT-TTTCAACTTGTTCCCTATAAGCACAGG
121775699 GATGCCA
64 GATGCCA
121775706 AATCTGTTGT
Statistics
Matches: 442, Mismatches: 21, Indels: 7
0.94 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 435 0.98
133 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
TGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGA
TGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA
TC
Found at i:121775985 original size:68 final size:68
Alignment explanation
Indices: 121775905--121776103 Score: 267
Period size: 68 Copynumber: 2.9 Consensus size: 68
121775895 TCTTCTTCCA
* ** * *
121775905 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTTTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
121775970 -TT
66 CCT
* * * * *
121775972 GCTGAAACTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCTAACGCTATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
121776037 TCCT
65 TCCT
*
121776041 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
121776104 AATTTGTAAT
Statistics
Matches: 113, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
67 6 0.05
68 106 0.94
69 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:121776359 original size:132 final size:132
Alignment explanation
Indices: 121776121--121777031 Score: 630
Period size: 132 Copynumber: 7.0 Consensus size: 132
121776111 AATTTCCAGC
* * * * * * *
121776121 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCTCAACTACTTAAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTT-AGG
121776186 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
121776251 GCT
130 GCT
*
121776254 -TGTTACCCTACTGTTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAG-G
* *
121776318 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCG
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTG
121776383 GCT
130 GCT
121776386 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * * * * * *
121776450 GATAAGATCTG-CAA--TTC-GATCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGT---C
66 GTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAG--GCTT-GTAAAT
* *
121776508 TTCGAT
127 TTGGCT
* * ** * * *
121776514 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTA
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * *** *
121776577 GGGGTTTAAG-GCTTGTAAA--TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CA
63 GGGG-TTAAGATC-TGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAA
* *
121776638 TCTTCGAT
126 T-TTGGCT
* * ** * * * * *
121776646 CTGTTTCCCTACTGCTTAGGGGGAT-AAGATC-TGCA-ATTCGGTCTGTTACCCTACCGATTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAGG
* * * * * *
121776708 GGTTTAAGACCCT-T-CATCTTC-GATCTATTTCCCTACTGCTTAGGGGGTTAA-GATCTGTAAA
65 GG-TTAAGA-TCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCT-TGTAAA
*
121776769 TCTTCAGC-
126 T-TT-GGCT
* * *** ** * *
121776777 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTC-AGCTTGTTACCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC-TGTTTCCCTACTGCTTA-G
* ** * * * * * *
121776840 GGGTTAA-AGC-CCATCATCTTC-GATCTGTTTCCCTACTGCTTA-GGGGATAA-G-ATCTACAA
64 GGGTTAAGATCTGTA-AATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTA-AA
*
121776899 TTCGG-T
126 TTTGGCT
* * * * * *
121776905 CTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTATT-GATCTGTTTCCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTA-G
* * *
121776968 GGGTTAAGATCTGTCAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTGAATT
64 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATT
121777032 CACTGATTCT
Statistics
Matches: 626, Mismatches: 108, Indels: 90
0.76 0.13 0.11
Matches are distributed among these distances:
127 8 0.01
128 80 0.13
129 93 0.15
130 76 0.12
131 66 0.11
132 297 0.47
133 6 0.01
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (132 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGG
CT
Found at i:121776739 original size:86 final size:89
Alignment explanation
Indices: 121776216--121776804 Score: 353
Period size: 87 Copynumber: 6.7 Consensus size: 89
121776206 CAGCCTGTTA
* * ** * * *
121776216 CCCTACTGCTTAGGGGGTTAAG-GCTTGTAAA-TTTGGCTTGTTACCCTACTGTTTAGGGGGTTA
1 CCCTACTGCTTAGGGGGATAAGATC-TGTAAACTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
*
121776279 A-AGCCCATCATCTTCGATCTGTTT
65 AGAGCCCATCATCTTCGATCTATTT
* *
121776303 CCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
1 CCCTACTGCTTAGGGGGATAAGATCTGTAAA-CTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
*** ** *
121776368 AG-GCTTGT-AAATTCG-GCT-TGTT
65 AGAGCCCATCATCTTCGATCTAT-TT
* * ** * * * * *
121776390 ACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTC-GATCTGTTTCCCTACTGCTTAGGGG-A
1 -CCCTACTGCTTAGGGGGATAAGA-TCTGTAAACTTCAG-CCTGTTACCCTACTGCTTAGGGGTT
* * * *
121776452 TAAGA--TC-TGCA-ATTCGATCTGTTA
63 TAAGAGCCCAT-CATCTTCGATCTATTT
* * ** * *** * * *
121776476 CCCTACCGATTAGGGGTTTAAGACCCT-TCGTCTTC-GATCTGTTTCCCTACTGCTTAGGGGGTT
1 CCCTACTGCTTAGGGGGATAAGA-TCTGTAAACTTCAG-CCTGTTACCCTACTGCTTAGGGGTTT
* ** * * * *
121776539 AAGA-TCTGTAAATCTTC-AGCCTGTTA
64 AAGAGCCCAT-CATCTTCGA-TCTATTT
** * * *
121776565 CCCTACTGCTTAGGGGTTTAAG-GCTTGTAAA-TTCAGCTTGTTACCCTACTGCTTAGGGGGTTA
1 CCCTACTGCTTAGGGGGATAAGATC-TGTAAACTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
*
121776628 A-AGCCCATCATCTTCGATCTGTTT
65 AGAGCCCATCATCTTCGATCTATTT
* * * * *
121776652 CCCTACTGCTTAGGGGGATAAGATCTG-CAA-TTCGGTCTGTTACCCTACCGATTAGGGGTTTAA
1 CCCTACTGCTTAGGGGGATAAGATCTGTAAACTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
*
121776715 GA-CCCTTCATCTTCGATCTATTT
66 GAGCCCATCATCTTCGATCTATTT
*
121776738 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
1 CCCTACTGCTTAGGGGGATAAGATCTGTAAA-CTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
121776803 AG
65 AG
121776805 GCTTGTAAAT
Statistics
Matches: 402, Mismatches: 71, Indels: 56
0.76 0.13 0.11
Matches are distributed among these distances:
84 1 0.00
85 56 0.14
86 92 0.23
87 96 0.24
88 65 0.16
89 92 0.23
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (89 bp):
CCCTACTGCTTAGGGGGATAAGATCTGTAAACTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
GAGCCCATCATCTTCGATCTATTT
Found at i:121776800 original size:218 final size:217
Alignment explanation
Indices: 121776254--121777033 Score: 1402
Period size: 217 Copynumber: 3.6 Consensus size: 217
121776244 AAATTTGGCT
* * * * *
121776254 TGTTACCCTACTGTTTAGGGGGTTAA-AGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAG
1 TGTTACCCTACCGATTAGGGGTTTAAGA-CCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
*
121776318 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCG
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
121776383 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAG
130 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAG
*
121776448 GGGATAAGATCTGCAATTCGATC
195 GGGATAAGATCTGCAATTCGGTC
*
121776471 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
121776536 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
121776601 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
131 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA-G
121776666 GGGATAAGATCTGCAATTCGGTC
195 GGGATAAGATCTGCAATTCGGTC
*
121776689 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGATCTATTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
121776754 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
121776819 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
131 CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
*
121776884 GGATAAGATCTACAATTCGGTC
196 GGATAAGATCTGCAATTCGGTC
* *
121776906 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTATT-GATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
* *
121776970 GTTAAGATCTGTCAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTGAATTCA
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
121777034 CTGATTCTAG
Statistics
Matches: 545, Mismatches: 16, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
216 86 0.16
217 244 0.45
218 215 0.39
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (217 bp):
TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
GGATAAGATCTGCAATTCGGTC
Found at i:121776801 original size:435 final size:435
Alignment explanation
Indices: 121776210--121777033 Score: 1431
Period size: 435 Copynumber: 1.9 Consensus size: 435
121776200 AATCTTCAGC
* * * *
121776210 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGTTTAGGGG
1 CTGTTACCCTACTGCTTAGGGGGATAAGGCTTGTAAATTCGGCTTGTTACCCTACCGATTAGGGG
*
121776275 GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCA
66 GTTAAAGCCCATCATCTTCGATCTATTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCA
*
121776340 GCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGG
131 GCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGG
*
121776405 GGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGATAAGATCTGCAATTCGAT
196 GGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGATAAGATCTACAATTCGAT
*
121776470 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
261 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTATT-GATCTGTTTCCCTACTGCTTAGGG
121776535 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
325 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
121776600 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
390 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
* * *
121776646 CTGTTTCCCTACTGCTTAGGGGGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGATTA-G
1 CTGTTACCCTACTGCTTAGGGGGATAAGGCT-TGTAAATTCGGCT-TGTTACCCTACCGATTAGG
* * *
121776707 GGGTTTAAGACCCTTCATCTTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCT
64 GGGTTAAAG-CCCATCATCTTCGATCTATTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCT
121776772 TCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTT
128 TCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTT
121776837 AGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGATAAGATCTACAATTC
193 AGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGATAAGATCTACAATTC
*
121776902 GGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTATTGATCTGTTTCCCTACTGCTTAG
258 GATCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTATTGATCTGTTTCCCTACTGCTTAG
* *
121776967 GGGGTTAAGATCTGTCAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTGAATT
323 GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATT
121777032 CA
388 CA
121777034 CTGATTCTAG
Statistics
Matches: 368, Mismatches: 17, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
434 97 0.26
435 244 0.66
436 27 0.07
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (435 bp):
CTGTTACCCTACTGCTTAGGGGGATAAGGCTTGTAAATTCGGCTTGTTACCCTACCGATTAGGGG
GTTAAAGCCCATCATCTTCGATCTATTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCA
GCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGG
GGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGATAAGATCTACAATTCGAT
CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTATTGATCTGTTTCCCTACTGCTTAGGGG
GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAG
CTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
Found at i:121777189 original size:66 final size:66
Alignment explanation
Indices: 121777083--121777209 Score: 227
Period size: 66 Copynumber: 1.9 Consensus size: 66
121777073 TCTATGCTTA
*
121777083 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
121777148 G
66 G
* *
121777149 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTAT
121777210 TATATGAATG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATGTGTTATGAAT
G
Found at i:121778410 original size:6 final size:6
Alignment explanation
Indices: 121778401--121778448 Score: 96
Period size: 6 Copynumber: 8.0 Consensus size: 6
121778391 GTGTTTTTTT
121778401 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
121778449 ATATAACTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.00, C:0.33, G:0.17, T:0.50
Consensus pattern (6 bp):
TTTGCC
Found at i:121782221 original size:2 final size:2
Alignment explanation
Indices: 121782209--121782246 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
121782199 ACAATAATAC
* *
121782209 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
121782247 ATAGAAATAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:121782589 original size:40 final size:40
Alignment explanation
Indices: 121782545--121782631 Score: 90
Period size: 40 Copynumber: 2.2 Consensus size: 40
121782535 TTAGAAATAA
* *
121782545 AAATAATAAAAGTAACA-ATAATGATAGTAATAATATAAAT
1 AAATAATAAAAGGAACATATAAT-ATAATAATAATATAAAT
* * *
121782585 AAAT-ATGAAAGGGCATATATAATATAATAATAATATAAAT
1 AAATAAT-AAAAGGAACATATAATATAATAATAATATAAAT
121782625 -AATAATA
1 AAATAATA
121782632 TATACATGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
39 6 0.15
40 28 0.72
41 5 0.13
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (40 bp):
AAATAATAAAAGGAACATATAATATAATAATAATATAAAT
Found at i:121782616 original size:3 final size:3
Alignment explanation
Indices: 121782603--121782688 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
121782593 AAGGGCATAT
**
121782603 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
121782650 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
121782689 AACAAAGCTC
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
2 8 0.12
3 48 0.73
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:121782627 original size:12 final size:12
Alignment explanation
Indices: 121782603--121782685 Score: 71
Period size: 12 Copynumber: 6.8 Consensus size: 12
121782593 AAGGGCATAT
121782603 ATAATAT-AATA
1 ATAATATAAATA
121782614 ATAATATAAATA
1 ATAATATAAATA
121782626 ATAATATATACATGA
1 ATAATATA-A-AT-A
**
121782641 GGAATA-ATAATA
1 ATAATATA-AATA
121782653 ATAATATAAATA
1 ATAATATAAATA
* *
121782665 ATAGTAAAAATA
1 ATAATATAAATA
*
121782677 ATAAAATAA
1 ATAATATAA
121782686 TAAAACAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
11 7 0.12
12 37 0.64
13 4 0.07
14 5 0.09
15 5 0.09
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:121782676 original size:27 final size:27
Alignment explanation
Indices: 121782603--121782689 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
121782593 AAGGGCATAT
* *
121782603 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* * * *
121782629 AT-ATATACAT--GAGGAATAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121782653 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
121782680 A-AATAATAAA
1 ATAAT-ATAAA
121782690 ACAAAGCTCT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 11 0.24
25 11 0.24
26 7 0.15
27 17 0.37
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:121783034 original size:25 final size:25
Alignment explanation
Indices: 121782987--121783035 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
121782977 AAAAACTAGC
*
121782987 CTTTCCAAGAAACAAAAATAACCTT
1 CTTTCCAAAAAACAAAAATAACCTT
121783012 CTTTCCACAAAAACAAAAA-AACCT
1 CTTTCCA-AAAAACAAAAATAACCT
121783036 CCTCCAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.51, C:0.27, G:0.02, T:0.20
Consensus pattern (25 bp):
CTTTCCAAAAAACAAAAATAACCTT
Found at i:121783046 original size:20 final size:23
Alignment explanation
Indices: 121783021--121783067 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
121783011 TCTTTCCACA
121783021 AAAACAAA-AA-AA-CCTCCTCC
1 AAAACAAAGAACAATCCTCCTCC
*
121783041 AAAACAAAGAACAATCCTTCTCC
1 AAAACAAAGAACAATCCTCCTCC
121783064 AAAA
1 AAAA
121783068 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 2 0.09
22 2 0.09
23 11 0.48
ACGTcount: A:0.55, C:0.30, G:0.02, T:0.13
Consensus pattern (23 bp):
AAAACAAAGAACAATCCTCCTCC
Found at i:121783187 original size:21 final size:21
Alignment explanation
Indices: 121783149--121783205 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
121783139 TGGGGTGGTT
121783149 TAGGTGGCCAAGGGTGGTGGAG
1 TAGGTGGCCAA-GGTGGTGGAG
*
121783171 TTGGTGGCCAAGGTGGTGGAG
1 TAGGTGGCCAAGGTGGTGGAG
121783192 TAGGTGGCCAAGGT
1 TAGGTGGCCAAGGT
121783206 TTTTATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
21 23 0.70
22 10 0.30
ACGTcount: A:0.18, C:0.11, G:0.51, T:0.21
Consensus pattern (21 bp):
TAGGTGGCCAAGGTGGTGGAG
Found at i:121783216 original size:4 final size:4
Alignment explanation
Indices: 121783207--121783233 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
121783197 GGCCAAGGTT
121783207 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
121783234 TTGTGTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:121784939 original size:2 final size:2
Alignment explanation
Indices: 121784932--121784964 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
121784922 AAAAATATTT
121784932 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121784965 TAGTTAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121787508 original size:9 final size:9
Alignment explanation
Indices: 121787494--121787518 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
121787484 GTAAAAATGA
121787494 CATTTTGGT
1 CATTTTGGT
121787503 CATTTTGGT
1 CATTTTGGT
121787512 CATTTTG
1 CATTTTG
121787519 TAAAAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.20, T:0.56
Consensus pattern (9 bp):
CATTTTGGT
Found at i:121788527 original size:45 final size:45
Alignment explanation
Indices: 121788475--121788562 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
121788465 TATGTAATTT
*
121788475 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACACCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACACCC
121788520 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACAC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACAC
121788563 ATGTTTTGGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACACCC
Found at i:121789869 original size:40 final size:40
Alignment explanation
Indices: 121789814--121789989 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
121789804 AGCGGCGTTT
*
121789814 TTTTTTAAAAA-CGCCGCTATAGGTACACCTTTAGTGGCG
1 TTTTTTAAAAAGCGCCGCTATAGGTACACCTTTAGCGGCG
*
121789853 TTTTTTAAAAAGCGCCGCTATAGGTACACATTTAGCGGCG
1 TTTTTTAAAAAGCGCCGCTATAGGTACACCTTTAGCGGCG
121789893 TTTTTTAAAAAGCGCCGCTATAGGTACACCTTTAGCGGCG
1 TTTTTTAAAAAGCGCCGCTATAGGTACACCTTTAGCGGCG
* * *
121789933 TTTTTTAAAGAGCGCCGCTA-ATGCT-CGATCTTTAGCGGC-
1 TTTTTTAAAAAGCGCCGCTATA-GGTAC-ACCTTTAGCGGCG
*
121789972 TTTTTTCAAAAGCGCCGC
1 TTTTTTAAAAAGCGCCGC
121789990 AAAAGAGTTT
Statistics
Matches: 126, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 29 0.23
40 97 0.77
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (40 bp):
TTTTTTAAAAAGCGCCGCTATAGGTACACCTTTAGCGGCG
Found at i:121790280 original size:39 final size:40
Alignment explanation
Indices: 121790186--121790285 Score: 127
Period size: 39 Copynumber: 2.5 Consensus size: 40
121790176 CTTTTAGTGG
* *
121790186 CTTTAGCGGCGCTTTTT-AAAAACGCCGCTATAGGTACAC
1 CTTTAGCGGCGCTTTTTAAAAAACGCCGCTATAGCTACAA
121790225 CTTTAGCGGCGCTTTTTAAAAAACGCCGCTA-ATGCT-CGAA
1 CTTTAGCGGCGCTTTTTAAAAAACGCCGCTATA-GCTAC-AA
*
121790265 CTTTAGCGGC-ATTTTTAAAAA
1 CTTTAGCGGCGCTTTTTAAAAA
121790286 GCACCACAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
39 29 0.53
40 26 0.47
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (40 bp):
CTTTAGCGGCGCTTTTTAAAAAACGCCGCTATAGCTACAA
Found at i:121791002 original size:22 final size:21
Alignment explanation
Indices: 121790977--121791026 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
121790967 GAGTTACTAT
121790977 TTTAAGGATTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
121790999 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
121791020 TTTAAGG
1 TTTAAGG
121791027 GTTGGAGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:121792534 original size:2 final size:2
Alignment explanation
Indices: 121792529--121792561 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
121792519 ATACACACAC
121792529 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121792562 AGCTTTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:121797430 original size:26 final size:28
Alignment explanation
Indices: 121797396--121797448 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
121797386 TATTTTGATA
121797396 ATGAATTTTA-AAT-TTTTATATTTTTC
1 ATGAATTTTATAATATTTTATATTTTTC
* *
121797422 ATGACTTTTATAATATTTTATTTTTTT
1 ATGAATTTTATAATATTTTATATTTTT
121797449 AAAAATTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 9 0.39
27 3 0.13
28 11 0.48
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (28 bp):
ATGAATTTTATAATATTTTATATTTTTC
Found at i:121797511 original size:43 final size:43
Alignment explanation
Indices: 121797456--121797602 Score: 213
Period size: 43 Copynumber: 3.4 Consensus size: 43
121797446 TTTAAAAATT
* * * *
121797456 TCATTACCTTTAGTGGTGTTTTTGGGAAAAGCGCTGTTAAAGG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCTGTTAAAGG
* * *
121797499 TCACGATCTTTAGCGGCGTTTGTGGGATAAGCGCTGTTAAAGG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCTGTTAAAGG
* *
121797542 TTATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGG
1 TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCTGTTAAAGG
121797585 TCATGACCTTTAGCGGCG
1 TCATGACCTTTAGCGGCG
121797603 CTTTTTGAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 91 1.00
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (43 bp):
TCATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCTGTTAAAGG
Found at i:121798461 original size:24 final size:24
Alignment explanation
Indices: 121798433--121798480 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
121798423 AGTGCAAGAA
121798433 AACCATTTTCAAACCAAATGTTTT
1 AACCATTTTCAAACCAAATGTTTT
*
121798457 AACCATTTTCAAACCAAATTTTTT
1 AACCATTTTCAAACCAAATGTTTT
121798481 CTAATATCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.40
Consensus pattern (24 bp):
AACCATTTTCAAACCAAATGTTTT
Found at i:121799312 original size:44 final size:44
Alignment explanation
Indices: 121799247--121799330 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
121799237 TTATACCTTT
* * ** *
121799247 TCATTTGTGTAAACCTAGGCCATTAGGTAAATGGTTGCACTCTC
1 TCATTTATGTAAACATAGGCCACCAGGTAAACGGTTGCACTCTC
* *
121799291 TCATTTATGTAAACATGGGCCACCAGGTCAACGGTTGCAC
1 TCATTTATGTAAACATAGGCCACCAGGTAAACGGTTGCAC
121799331 CTTCTTATCT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (44 bp):
TCATTTATGTAAACATAGGCCACCAGGTAAACGGTTGCACTCTC
Found at i:121799412 original size:44 final size:44
Alignment explanation
Indices: 121799359--121799464 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
121799349 TCAGGTTCAT
* * * *
121799359 GGTTGCACCCTTTCATTTGTGTAAACATGATTCGTCAGGTCAAC
1 GGTTGCACCCTTTCATTTGTGTAAACATAAGTCGTAAGATCAAC
*
121799403 GGTTGCACCCTCTT-ATTTGTGTAAACCTAAGTCGTAAGATCAAC
1 GGTTGCACCCT-TTCATTTGTGTAAACATAAGTCGTAAGATCAAC
* *
121799447 -ATTTCACCCTTTCATTTG
1 GGTTGCACCCTTTCATTTG
121799465 CTTAAACTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
42 2 0.04
43 13 0.25
44 36 0.68
45 2 0.04
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (44 bp):
GGTTGCACCCTTTCATTTGTGTAAACATAAGTCGTAAGATCAAC
Found at i:121803439 original size:39 final size:39
Alignment explanation
Indices: 121803385--121803464 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
121803375 AATTGAAAAA
121803385 TGACTTCGCTTATGACACAAAGACCTCACCGCTGTTTTT
1 TGACTTCGCTTATGACACAAAGACCTCACCGCTGTTTTT
*
121803424 TGACTTTGCTTATGACACAAAGACCTCACCGCTGTTTTT
1 TGACTTCGCTTATGACACAAAGACCTCACCGCTGTTTTT
121803463 TG
1 TG
121803465 TCTTAGACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (39 bp):
TGACTTCGCTTATGACACAAAGACCTCACCGCTGTTTTT
Found at i:121808125 original size:15 final size:15
Alignment explanation
Indices: 121808105--121808136 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
121808095 ATTTTTCTCC
121808105 CACTAATCCACTTCT
1 CACTAATCCACTTCT
121808120 CACTAATCCACTTCT
1 CACTAATCCACTTCT
121808135 CA
1 CA
121808137 AACTTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.41, G:0.00, T:0.31
Consensus pattern (15 bp):
CACTAATCCACTTCT
Found at i:121811338 original size:19 final size:19
Alignment explanation
Indices: 121811303--121811381 Score: 99
Period size: 19 Copynumber: 4.2 Consensus size: 19
121811293 AGATTACAAG
121811303 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
121811324 ATTATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
* *
121811341 ATCATATCTAATATTGCGT
1 ATCATATCTAAGATTGCAT
121811360 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
121811379 ATC
1 ATC
121811382 CTTAAAGATT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
17 15 0.29
19 28 0.55
20 1 0.02
21 7 0.14
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:121811367 original size:36 final size:38
Alignment explanation
Indices: 121811303--121811375 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 38
121811293 AGATTACAAG
*
121811303 ATCATATCTTCAAGATTGCATATTATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
* *
121811341 ATCATATC-T-AATATTGCGTATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
121811376 CATATCCTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
36 23 0.72
37 1 0.03
38 8 0.25
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:121812407 original size:166 final size:167
Alignment explanation
Indices: 121812130--121812565 Score: 602
Period size: 166 Copynumber: 2.6 Consensus size: 167
121812120 GACACTATTG
* * *
121812130 CTTAGGGGGTTAAGGTGCA-TCGTCTTCGATCTGCTCCGCTACTGCTTA-GG-GATAAGATCTGC
1 CTTAGGGGATTAAGGCG-AGTCGTC-TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC
121812192 AAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC-AGGTCTTCGATCTACTCCACTAATG
64 --A--TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGGTCTTCGATCTACTCCACTAATG
121812256 CTTAGGGAGATAAGATCT-TCAAATTTAACCTGTTACCCTACTA
125 CTTAGGGAGATAAGATCTGT-AAATTTAACCTGTTACCCTACTA
*
121812299 CTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTGC-
1 CTTAGGGGATTAAGGCGAGTCGTC-TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA
* * *
121812363 GAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGA-GTCTTCGATCTGCTCCACTACTGCTTAG
65 TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGGTCTTCGATCTACTCCACTAATGCTTAG
*
121812427 GGAGATAAGATCTGTAAATTTAACCTGTTACCCTACTG
130 GGAGATAAGATCTGTAAATTTAACCTGTTACCCTACTA
* *
121812465 CTTAGGGGATTAAGGCGAGTC-T-TTGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCAA
1 CTTAGGGGATTAAGGCGAGTCGTCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC--
*
121812528 ATTTAACCTATTACCCTACTGCTTAGGGGATTAAGGCG
64 A--TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
121812566 CTGAATTTTG
Statistics
Matches: 243, Mismatches: 14, Indels: 21
0.87 0.05 0.08
Matches are distributed among these distances:
163 36 0.15
165 1 0.00
166 115 0.47
167 2 0.01
168 34 0.14
169 42 0.17
170 2 0.01
171 11 0.05
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (167 bp):
CTTAGGGGATTAAGGCGAGTCGTCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAT
AACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGGTCTTCGATCTACTCCACTAATGCTTAGG
GAGATAAGATCTGTAAATTTAACCTGTTACCCTACTA
Found at i:121812512 original size:41 final size:41
Alignment explanation
Indices: 121812375--121812512 Score: 131
Period size: 41 Copynumber: 3.3 Consensus size: 41
121812365 ACCTGTTACC
* *
121812375 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCTA
* ** * *
121812416 CTACTGCTTAGGGAGA-TAAGATCTGTA-AATTTAACCTG-T-TA
1 CTACTGCTTAGGG-GATTAAG-GC-G-AGTCTTTGATCTGCTCTA
121812457 CCCTACTGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCTA
1 --CTACTGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCTA
121812500 CTACTGCTTAGGG
1 CTACTGCTTAGGG
121812513 AGATAAGATC
Statistics
Matches: 75, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
40 1 0.01
41 39 0.52
42 8 0.11
43 26 0.35
44 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (41 bp):
CTACTGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCTA
Found at i:121812565 original size:84 final size:84
Alignment explanation
Indices: 121812128--121812565 Score: 640
Period size: 84 Copynumber: 5.2 Consensus size: 84
121812118 TGGACACTAT
* * *
121812128 TGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCCGCTACTGCTTA-GG-GATAAGATCTG
1 TGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
121812191 CAAATTTAACCTGTTACCCTAC
63 CAAATTTAACCTGTTACCCTAC
* * *
121812213 TGCTTAGGGGATTAAGGC-AGGTCTTCGATCTACTCCACTAATGCTTAGGGAGATAAGATCTTCA
1 TGCTTAGGGGATTAAGGCGA-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA
121812277 AATTTAACCTGTTACCCTAC
65 AATTTAACCTGTTACCCTAC
* *
121812297 TACTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
1 TGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
*
121812362 C-----GAACCTGTTACCCTAC
63 CAAATTTAACCTGTTACCCTAC
*
121812379 TGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
1 TGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
121812444 ATTTAACCTGTTACCCTAC
66 ATTTAACCTGTTACCCTAC
* *
121812463 TGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGCAA
1 TGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
*
121812528 ATTTAACCTATTACCCTAC
66 ATTTAACCTGTTACCCTAC
121812547 TGCTTAGGGGATTAAGGCG
1 TGCTTAGGGGATTAAGGCG
121812566 CTGAATTTTG
Statistics
Matches: 321, Mismatches: 21, Indels: 23
0.88 0.06 0.06
Matches are distributed among these distances:
79 37 0.12
81 1 0.00
82 61 0.19
83 3 0.01
84 166 0.52
85 18 0.06
87 35 0.11
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (84 bp):
TGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
ATTTAACCTGTTACCCTAC
Found at i:121813534 original size:19 final size:19
Alignment explanation
Indices: 121813512--121813574 Score: 90
Period size: 20 Copynumber: 3.2 Consensus size: 19
121813502 TGGCCTCTCA
121813512 TTTTTCTTTTTTCTTTTTT
1 TTTTTCTTTTTTCTTTTTT
121813531 TTTTTCTCTTTTTCTCTTTTT
1 TTTTTCT-TTTTTCT-TTTTT
*
121813552 CTTTTCTTTTTTCCTTTTTT
1 TTTTTCTTTTTT-CTTTTTT
121813572 TTT
1 TTT
121813575 GAAATAGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
19 7 0.18
20 19 0.49
21 13 0.33
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTCTTTTTTCTTTTTT
Found at i:121813550 original size:28 final size:27
Alignment explanation
Indices: 121813507--121813574 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 27
121813497 CACCTTGGCC
*
121813507 TCTCATTTTTCTTTTTTCTTTTTTTTTT
1 TCTC-TTTTTCTTTTTTCTTTTCTTTTT
121813535 TCTCTTTTTCTCTTTTTCTTTTCTTTTT
1 TCTCTTTTTCT-TTTTTCTTTTCTTTTT
121813563 TC-CTTTTT-TTTT
1 TCTCTTTTTCTTTT
121813575 GAAATAGAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
25 3 0.08
26 1 0.03
27 13 0.34
28 21 0.55
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (27 bp):
TCTCTTTTTCTTTTTTCTTTTCTTTTT
Found at i:121813569 original size:6 final size:7
Alignment explanation
Indices: 121813507--121813569 Score: 51
Period size: 7 Copynumber: 9.1 Consensus size: 7
121813497 CACCTTGGCC
121813507 TCTCATTT
1 TCTC-TTT
121813515 T-TCTTT
1 TCTCTTT
*
121813521 TTTCTTT
1 TCTCTTT
* *
121813528 TTTTTTT
1 TCTCTTT
121813535 TCTCTTTT
1 TCTC-TTT
121813543 TCTCTTT
1 TCTCTTT
121813550 T-TCTTT
1 TCTCTTT
*
121813556 TCTTTTT
1 TCTCTTT
121813563 TC-CTTT
1 TCTCTTT
121813569 T
1 T
121813570 TTTTTGAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
6 14 0.30
7 25 0.53
8 8 0.17
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (7 bp):
TCTCTTT
Found at i:121819198 original size:22 final size:21
Alignment explanation
Indices: 121819168--121819214 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
121819158 TACAAATTAA
121819168 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
121819190 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
121819211 ATCT
1 ATCT
121819215 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:121819220 original size:19 final size:19
Alignment explanation
Indices: 121819185--121819246 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
121819175 AGATTACAAG
121819185 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
121819206 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
121819225 ATTATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
121819244 ATC
1 ATC
121819247 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 30 0.77
20 1 0.03
21 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:121821389 original size:26 final size:26
Alignment explanation
Indices: 121821360--121821469 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
121821350 TGATACAAAT
121821360 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
121821386 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
121821412 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
121821438 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
121821464 TGATAA
1 TGATAA
121821470 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:121823471 original size:137 final size:137
Alignment explanation
Indices: 121823226--121823648 Score: 794
Period size: 137 Copynumber: 3.1 Consensus size: 137
121823216 TGAGTAGTCT
*
121823226 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
121823290 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
121823355 ACTGTTA
131 ACTGTTA
121823362 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
121823427 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
121823492 ACTGTTA
131 ACTGTTA
121823499 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
121823564 TGCTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
121823629 ACTGTTA
131 ACTGTTA
**
121823636 CCTGAATGGGCTT
1 CCCAAATGGGCTT
121823649 AGGCCCAATA
Statistics
Matches: 281, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
136 20 0.07
137 261 0.93
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:121829119 original size:136 final size:135
Alignment explanation
Indices: 121828875--121829158 Score: 541
Period size: 136 Copynumber: 2.1 Consensus size: 135
121828865 TATTGGGCCT
*
121828875 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCTTTTCAGATTACAATAAACTGGGCCTTA
1 AAGCCCATT-TGGTAACAGTGGTACTGGGCCAGAGCCTTTTCAGATTACAATAAACTGGGCCTTA
121828940 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
65 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
121829005 ATATGC
130 ATATGC
121829011 AAGCCCATTTGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGTAACAGTGGTACTGGGCCAGAG-CCTTTTCAGATTACAATAAACTGGGCCTTA
121829076 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
65 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAAC
121829141 ATATGC
130 ATATGC
121829147 AAGCCCATTTGG
1 AAGCCCATTTGG
121829159 GGAGACTACT
Statistics
Matches: 146, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
135 24 0.16
136 122 0.84
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (135 bp):
AAGCCCATTTGGTAACAGTGGTACTGGGCCAGAGCCTTTTCAGATTACAATAAACTGGGCCTTAG
CCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACA
TATGC
Found at i:121831035 original size:25 final size:26
Alignment explanation
Indices: 121830941--121831049 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
121830931 CATGAAATTC
121830941 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
121830967 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
121830993 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
121831019 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
121831044 TTATCA
1 TTATCA
121831050 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:121834900 original size:64 final size:64
Alignment explanation
Indices: 121834827--121835037 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
121834817 CTGGGCCAGA
*
121834827 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
121834891 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
121834953 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
121834964 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
121835028 GCCCATTTCA
1 GCCCATTTCA
121835038 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:121835039 original size:137 final size:137
Alignment explanation
Indices: 121834793--121835079 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
121834783 TATTGGGCCT
**
121834793 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
121834858 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
121834923 CATATGC
131 CATATGC
121834930 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
121834995 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
121835060 CATATGC
131 CATATGC
121835067 AAGCCCATTTGGG
1 AAGCCCATTTGGG
121835080 GAGACTACTC
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:121836956 original size:25 final size:26
Alignment explanation
Indices: 121836862--121836970 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
121836852 CATGAAATTC
121836862 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
121836888 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
121836914 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
121836940 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
121836965 TTATCA
1 TTATCA
121836971 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 23 0.28
26 58 0.72
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:121837876 original size:26 final size:26
Alignment explanation
Indices: 121837847--121837956 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
121837837 TGATACAAAT
121837847 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
121837873 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
121837899 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
121837925 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
121837951 TGATAA
1 TGATAA
121837957 GAATTCATGT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:121839953 original size:137 final size:136
Alignment explanation
Indices: 121839711--121840130 Score: 795
Period size: 137 Copynumber: 3.1 Consensus size: 136
121839701 TAGTCTCCCA
*
121839711 AAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
1 AAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
121839776 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTG
66 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTG
121839841 TTACCC
131 TTACCC
121839847 AAATGGGCTTGCATATGTTGACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
1 AAATGGGCTTGCATATGTT-ACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
121839912 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
65 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
121839977 GTTACCC
130 GTTACCC
121839984 AAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
1 AAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGT
121840049 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
65 TATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACT
*
121840114 GTTACCT
130 GTTACCC
*
121840121 GAATGGGCTT
1 AAATGGGCTT
121840131 AGGCCCAATA
Statistics
Matches: 279, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
136 19 0.07
137 258 0.92
138 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (136 bp):
AAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTG
TTACCC
Found at i:121842225 original size:13 final size:13
Alignment explanation
Indices: 121842172--121842227 Score: 53
Period size: 13 Copynumber: 4.3 Consensus size: 13
121842162 TAAAGTTTTA
121842172 TTTATTAAATAAAT
1 TTTATTAAAT-AAT
121842186 TTT-TTAAATAA-
1 TTTATTAAATAAT
* * *
121842197 TTTATCTCACTTAT
1 TTTAT-TAAATAAT
121842211 TTTATTAAATAAT
1 TTTATTAAATAAT
121842224 TTTA
1 TTTA
121842228 AAATATTTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
11 3 0.09
12 3 0.09
13 19 0.58
14 8 0.24
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTATTAAATAAT
Found at i:121842839 original size:18 final size:18
Alignment explanation
Indices: 121842812--121842846 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
121842802 TCTAAATTGA
* *
121842812 AAAACTCAAACATAAAAT
1 AAAACCCAAAAATAAAAT
121842830 AAAACCCAAAAATAAAA
1 AAAACCCAAAAATAAAA
121842847 AATGTGGCCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.17, G:0.00, T:0.11
Consensus pattern (18 bp):
AAAACCCAAAAATAAAAT
Found at i:121844072 original size:26 final size:24
Alignment explanation
Indices: 121844032--121844091 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
121844022 TTATTTTATT
* * *
121844032 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
121844056 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
121844082 AAATAAATAT
1 AAATAAATAT
121844092 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:121844103 original size:22 final size:22
Alignment explanation
Indices: 121844062--121844120 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
121844052 ATAATAAATC
* *
121844062 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
121844082 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
121844104 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
121844121 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:121845879 original size:22 final size:23
Alignment explanation
Indices: 121845854--121845898 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
121845844 CCGGAGCTCC
121845854 CTCTCCCTCTCCCCT-TTCTTTT
1 CTCTCCCTCTCCCCTCTTCTTTT
*
121845876 CTCTCCCTCTCCTCTCTTCTTTT
1 CTCTCCCTCTCCCCTCTTCTTTT
121845899 TTTTTCTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (23 bp):
CTCTCCCTCTCCCCTCTTCTTTT
Found at i:121846719 original size:24 final size:23
Alignment explanation
Indices: 121846679--121846744 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 23
121846669 TATTATAATA
*
121846679 TATATATATATTTATGTATAT-TAT
1 TATATAT-TTTTTATGT-TATGTAT
121846703 TATATATTTTTTAATGTTATGTAT
1 TATATATTTTTT-ATGTTATGTAT
* *
121846727 TGTATATTTCTTACTGTT
1 TATATATTTTTTA-TGTT
121846745 CGTATACTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 8 0.22
24 28 0.78
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.61
Consensus pattern (23 bp):
TATATATTTTTTATGTTATGTAT
Found at i:121863417 original size:2 final size:2
Alignment explanation
Indices: 121863363--121863399 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
121863353 AATATATGCC
121863363 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121863400 GTTAAAGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:121863623 original size:17 final size:16
Alignment explanation
Indices: 121863579--121863629 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
121863569 CATTAAAAAC
*
121863579 ATATATAATAATATAC
1 ATATATAATAATATAT
*
121863595 ATAAATATATAATATAT
1 ATATATA-ATAATATAT
121863612 ATATTATAATAATA-AT
1 ATA-TATAATAATATAT
121863628 AT
1 AT
121863630 GAAAAAGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 10 0.33
17 17 0.57
18 3 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATATAATAATATAT
Found at i:121864412 original size:27 final size:27
Alignment explanation
Indices: 121864385--121864435 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
121864375 AAGGGGAAGA
121864385 AAAAAAAGAAGAGAGG-AGAGGGAGAG
1 AAAAAAAGAAGAGAGGAAGAGGGAGAG
* **
121864411 AAAGAAAGGGGAGAGGAAGAGGGAG
1 AAAAAAAGAAGAGAGGAAGAGGGAG
121864436 CTCCGGTGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (27 bp):
AAAAAAAGAAGAGAGGAAGAGGGAGAG
Found at i:121864425 original size:21 final size:22
Alignment explanation
Indices: 121864389--121864431 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
121864379 GGAAGAAAAA
*
121864389 AAAGAAGAGAGGAGAGGGAGAG
1 AAAGAAGAGAGGAGAGGAAGAG
*
121864411 AAAGAA-AGGGGAGAGGAAGAG
1 AAAGAAGAGAGGAGAGGAAGAG
121864432 GGAGCTCCGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (22 bp):
AAAGAAGAGAGGAGAGGAAGAG
Found at i:121864549 original size:13 final size:13
Alignment explanation
Indices: 121864531--121864564 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
121864521 AAATCTGATT
121864531 TTTTTTTTTTTTA
1 TTTTTTTTTTTTA
*
121864544 TTTTTTATTTTTA
1 TTTTTTTTTTTTA
121864557 TTATTTTT
1 TT-TTTTT
121864565 ATATTCTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTTTTTTA
Found at i:121864565 original size:9 final size:8
Alignment explanation
Indices: 121864528--121864569 Score: 52
Period size: 7 Copynumber: 5.4 Consensus size: 8
121864518 TAAAAATCTG
121864528 ATTTTTTT
1 ATTTTTTT
121864536 -TTTTTTT
1 ATTTTTTT
121864543 A-TTTTTT
1 ATTTTTTT
121864550 ATTTTTATT
1 ATTTTT-TT
*
121864559 ATTTTTAT
1 ATTTTTTT
121864567 ATT
1 ATT
121864570 CTAAGTTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
7 14 0.47
8 8 0.27
9 8 0.27
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (8 bp):
ATTTTTTT
Found at i:121868710 original size:16 final size:15
Alignment explanation
Indices: 121868689--121868722 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
121868679 ATTTGGTTAT
121868689 TTTTAATTTCTATAAA
1 TTTTAATTTCTA-AAA
*
121868705 TTTTAATTTTTAAAA
1 TTTTAATTTCTAAAA
121868720 TTT
1 TTT
121868723 CAGTCATCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTAATTTCTAAAA
Found at i:121869617 original size:30 final size:31
Alignment explanation
Indices: 121869559--121869621 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
121869549 CTTAACAAGT
121869559 AAATGCCTCCAAAATAATAAAAAAAATTAAC
1 AAATGCCTCCAAAATAATAAAAAAAATTAAC
** *
121869590 AAATGCCTTTAAAATAAT-AACAAAATTAAC
1 AAATGCCTCCAAAATAATAAAAAAAATTAAC
121869620 AA
1 AA
121869622 GAAAATAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.60, C:0.14, G:0.03, T:0.22
Consensus pattern (31 bp):
AAATGCCTCCAAAATAATAAAAAAAATTAAC
Found at i:121872499 original size:29 final size:31
Alignment explanation
Indices: 121872467--121872530 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
121872457 AATAAAATAA
*
121872467 TAAAATAATAAAAT-AATAA-AA-TATCTTAT
1 TAAAAT-ATAAAATAAATAATAATTATCTAAT
*
121872496 TAAAATATTAAATAAATAATAATTATCTAAT
1 TAAAATATAAAATAAATAATAATTATCTAAT
121872527 TAAA
1 TAAA
121872531 TAACTATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 6 0.20
29 11 0.37
30 2 0.07
31 11 0.37
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (31 bp):
TAAAATATAAAATAAATAATAATTATCTAAT
Found at i:121872507 original size:8 final size:8
Alignment explanation
Indices: 121872457--121872489 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
121872447 ATATAGACTA
121872457 AATAAAAT
1 AATAAAAT
121872465 AATAAAAT
1 AATAAAAT
121872473 AATAAAAT
1 AATAAAAT
121872481 AATAAAAT
1 AATAAAAT
121872489 A
1 A
121872490 TCTTATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:121872789 original size:29 final size:30
Alignment explanation
Indices: 121872743--121872810 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
121872733 CACCCTTAAA
* * * *
121872743 ATATTTTCACTATTAATCCTTCAACTTTTT
1 ATATTTACACTATTAATCCCTCAAATTTTG
121872773 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTG
121872802 AGTATTTAC
1 A-TATTTAC
121872811 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.29, C:0.19, G:0.03, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTG
Found at i:121875749 original size:12 final size:12
Alignment explanation
Indices: 121875720--121875763 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
121875710 CCTACTCCAC
*
121875720 CACCAGCACCAG
1 CACCACCACCAG
*
121875732 CGCCACCACCTA-
1 CACCACCACC-AG
121875744 CACCACCACCAG
1 CACCACCACCAG
121875756 CACCACCA
1 CACCACCA
121875764 AATCCACCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 1 0.04
12 25 0.93
13 1 0.04
ACGTcount: A:0.32, C:0.57, G:0.09, T:0.02
Consensus pattern (12 bp):
CACCACCACCAG
Found at i:121875780 original size:30 final size:30
Alignment explanation
Indices: 121875713--121875780 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
121875703 AGCGCCTCCT
* *
121875713 ACTCCACCACCAGCACCAGCGCCACCACCT
1 ACTCCACCACCAGCACCAGCGCAACCACCG
*
121875743 ACACCACCACCAGCACCA-C-CAAATCCACCG
1 ACTCCACCACCAGCACCAGCGC-AA-CCACCG
121875773 ACTCCACC
1 ACTCCACC
121875781 GGTTCCTCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 1 0.03
29 2 0.06
30 29 0.91
ACGTcount: A:0.31, C:0.56, G:0.07, T:0.06
Consensus pattern (30 bp):
ACTCCACCACCAGCACCAGCGCAACCACCG
Found at i:121875791 original size:27 final size:27
Alignment explanation
Indices: 121875761--121875888 Score: 193
Period size: 27 Copynumber: 4.7 Consensus size: 27
121875751 ACCAGCACCA
* *
121875761 CCAAATCCACCGACTCCACCGGTTCCT
1 CCAAGTCCACCGAATCCACCGGTTCCT
* *
121875788 CCAAGTCCACCGACTCCACCGGTACCT
1 CCAAGTCCACCGAATCCACCGGTTCCT
121875815 CCAAGTCCACCGAATCCACCGGTTCCT
1 CCAAGTCCACCGAATCCACCGGTTCCT
*
121875842 CCAAGTCCACCGAATCCTCCGGTTCCT
1 CCAAGTCCACCGAATCCACCGGTTCCT
* *
121875869 CCAAGTCCACCCAAACCACC
1 CCAAGTCCACCGAATCCACC
121875889 ACCACCACCA
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.23, C:0.48, G:0.12, T:0.16
Consensus pattern (27 bp):
CCAAGTCCACCGAATCCACCGGTTCCT
Found at i:121875900 original size:54 final size:54
Alignment explanation
Indices: 121875788--121875906 Score: 148
Period size: 54 Copynumber: 2.2 Consensus size: 54
121875778 ACCGGTTCCT
* * * **** *
121875788 CCAAGTCCACCGACTCCACCGGTACCTCCAAGTCCACCGAATCCACCGGTTCCT
1 CCAAGTCCACCGAATCCACCGGTACCTCCAAGTCCACCCAAACCACCACCACCA
* *
121875842 CCAAGTCCACCGAATCCTCCGGTTCCTCCAAGTCCACCCAAACCACCACCACCA
1 CCAAGTCCACCGAATCCACCGGTACCTCCAAGTCCACCCAAACCACCACCACCA
121875896 CCAAGTCCACC
1 CCAAGTCCACC
121875907 TACGCCACCA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.25, C:0.49, G:0.12, T:0.14
Consensus pattern (54 bp):
CCAAGTCCACCGAATCCACCGGTACCTCCAAGTCCACCCAAACCACCACCACCA
Found at i:121876484 original size:25 final size:25
Alignment explanation
Indices: 121876455--121876524 Score: 140
Period size: 25 Copynumber: 2.8 Consensus size: 25
121876445 AAATGTTAGA
121876455 GTTGATGGTGAAGAGGTGTAGAGAT
1 GTTGATGGTGAAGAGGTGTAGAGAT
121876480 GTTGATGGTGAAGAGGTGTAGAGAT
1 GTTGATGGTGAAGAGGTGTAGAGAT
121876505 GTTGATGGTGAAGAGGTGTA
1 GTTGATGGTGAAGAGGTGTA
121876525 TACCATCGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.27, C:0.00, G:0.44, T:0.29
Consensus pattern (25 bp):
GTTGATGGTGAAGAGGTGTAGAGAT
Found at i:121879957 original size:2 final size:2
Alignment explanation
Indices: 121879906--121879944 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
121879896 CTCAATTGTA
121879906 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
121879945 AATTCAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:121882353 original size:42 final size:42
Alignment explanation
Indices: 121882288--121882386 Score: 144
Period size: 42 Copynumber: 2.4 Consensus size: 42
121882278 TATGGATTCT
* * **
121882288 CCACAGCTCATGTGAGCGGCATCGTGTAGCTAACATCTCAAC
1 CCACAGCTCGTGTGAACAACATCGTGTAGCTAACATCTCAAC
*
121882330 CCACAGCTCGTGTGAACAACATCGTGTAGCTAACATCTCGAC
1 CCACAGCTCGTGTGAACAACATCGTGTAGCTAACATCTCAAC
*
121882372 CCACAGCTTGTGTGA
1 CCACAGCTCGTGTGA
121882387 GCAGGCTCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.22
Consensus pattern (42 bp):
CCACAGCTCGTGTGAACAACATCGTGTAGCTAACATCTCAAC
Found at i:121888488 original size:22 final size:22
Alignment explanation
Indices: 121888449--121888507 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
121888439 GTTTTAAGAA
*
121888449 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
121888470 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
121888492 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
121888508 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:121888524 original size:26 final size:24
Alignment explanation
Indices: 121888478--121888537 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
121888468 ATTTGTTTTA
*
121888478 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
121888502 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
121888528 TTTTTTATTT
1 ATATTTATTT
121888538 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:121889396 original size:2 final size:2
Alignment explanation
Indices: 121889389--121889417 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
121889379 ATTCCCAAGT
121889389 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
121889418 GTTTTTTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:121890270 original size:127 final size:127
Alignment explanation
Indices: 121890025--121890347 Score: 421
Period size: 127 Copynumber: 2.5 Consensus size: 127
121890015 GAAAATTCCT
* * * * *
121890025 TAAAACCAAGGAAATATTCGATGTTTGGAAATTCGGGGAATAGTGCCTTATCGTGCTGGGTTTCG
1 TAAAA-CAAGGCAATGTTCGATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCG
* ** *
121890090 ATTGCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTTACTCATGTTTTCTAAATCC
65 ATTTCCTGTTTGCCCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCTAAATCC
* * * * *
121890153 TAAAACAAGGCAATGTTTGATATTTGGAAATTCAAGGAACCGTGCCCTATAGTGCTGGGTTTCGA
1 TAAAACAAGGCAATGTTCGATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
* * * * * *
121890218 TTTCCTGTTTGCCCAAAATAGTCGAATATTTCTTTGGGATTTCACTCGTGTTTTCTAAATTC
66 TTTCCTGTTTGCCCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCTAAATCC
* * * *
121890280 TAAGATAAGGCAATGTTCAATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGGTTTCGA
1 TAAAACAAGGCAATGTTCGATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
121890345 TTT
66 TTT
121890348 TTCGTTGGAC
Statistics
Matches: 166, Mismatches: 29, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
127 161 0.97
128 5 0.03
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (127 bp):
TAAAACAAGGCAATGTTCGATGTTTGGAAATTCGAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
TTTCCTGTTTGCCCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCTAAATCC
Found at i:121912294 original size:22 final size:22
Alignment explanation
Indices: 121912268--121912311 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
121912258 TTTATTATAC
121912268 TTAGCATAAACAGATAACTACT
1 TTAGCATAAACAGATAACTACT
*
121912290 TTAGCATAAACAGCTAACTACT
1 TTAGCATAAACAGATAACTACT
121912312 GTGGGCTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.27
Consensus pattern (22 bp):
TTAGCATAAACAGATAACTACT
Found at i:121924468 original size:29 final size:29
Alignment explanation
Indices: 121924420--121924513 Score: 118
Period size: 29 Copynumber: 3.2 Consensus size: 29
121924410 TGTGTGACAT
*
121924420 GGCCGTGTGAGA-TCAATGTTGGGCAACAC
1 GGCCGTGTGAGACT-AGTGTTGGGCAACAC
*
121924449 GGCCGTGTGAGACTAGTGTTGGGCAACAG
1 GGCCGTGTGAGACTAGTGTTGGGCAACAC
* * *
121924478 GGTCGTGTGAGACCAGTGTTGGGCGACAC
1 GGCCGTGTGAGACTAGTGTTGGGCAACAC
*
121924507 GACCGTG
1 GGCCGTG
121924514 CCTCTTTTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 55 0.98
30 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.39, T:0.20
Consensus pattern (29 bp):
GGCCGTGTGAGACTAGTGTTGGGCAACAC
Found at i:121928138 original size:10 final size:10
Alignment explanation
Indices: 121928123--121928172 Score: 75
Period size: 10 Copynumber: 5.0 Consensus size: 10
121928113 GATTTTTTTC
121928123 ATTTATCTTT
1 ATTTATCTTT
121928133 ATTTATCTTT
1 ATTTATCTTT
*
121928143 AATTATCTTT
1 ATTTATCTTT
121928153 ATTTAT-TTAT
1 ATTTATCTT-T
121928163 ATTTATCTTT
1 ATTTATCTTT
121928173 TAAAATTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 32 0.89
11 2 0.06
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:121939673 original size:20 final size:20
Alignment explanation
Indices: 121939648--121939687 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
121939638 TGGCAGTTCA
121939648 ATTAGATTTTAAGTACCAAC
1 ATTAGATTTTAAGTACCAAC
*
121939668 ATTAGATTTTAAGTGCCAAC
1 ATTAGATTTTAAGTACCAAC
121939688 TTGAATTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (20 bp):
ATTAGATTTTAAGTACCAAC
Found at i:121940418 original size:17 final size:17
Alignment explanation
Indices: 121940398--121940431 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
121940388 ATGTTTAGGT
121940398 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
121940415 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
121940432 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:121945824 original size:16 final size:17
Alignment explanation
Indices: 121945800--121945836 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
121945790 GATAGAATTT
121945800 AATTAAAATTTAA-AAA
1 AATTAAAATTTAATAAA
*
121945816 AATTGAAATTTAATAAA
1 AATTAAAATTTAATAAA
121945833 AATT
1 AATT
121945837 TTCAATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
AATTAAAATTTAATAAA
Found at i:121949303 original size:41 final size:42
Alignment explanation
Indices: 121949241--121949353 Score: 158
Period size: 41 Copynumber: 2.7 Consensus size: 42
121949231 CTTTGTTTTC
* * *
121949241 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACAA-A
1 TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCA-AATA
121949283 T-GATGCCATAGTCCAGCTATGGTCTTACACATATTCAAATA
1 TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCAAATA
* *
121949324 TCGATGCCATAGCCCAGCTTTGGTCTTACA
1 TCGATGCCATAGTCCAGCTATGGTCTTACA
121949354 GGTAATCACA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.03
41 35 0.55
42 27 0.42
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGTCCAGCTATGGTCTTACACATATTCAAATA
Done.