Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 400 of 425
Found at i:122308735 original size:68 final size:68
Alignment explanation
Indices: 122308591--122308737 Score: 160
Period size: 68 Copynumber: 2.2 Consensus size: 68
122308581 TGTATAATTA
* * * ** * *
122308591 TTTTGTTAGTAGTTTAT--GATTAGGTTATAAATTATTAGTTTTTTTGTATTTTGTTATTGTTAT
1 TTTTGTTAATAATTTATGGGATTAGGTTACAAATTATTAGTTTTAGTGTATTGTGTTATTGTGAT
122308654 TTG
66 TTG
*
122308657 TTTTGTTAATAATTTATGGGATTAGGTTACAAATTGTTAGTGTTTAGTGTATTAGT-TTATTGTG
1 TTTTGTTAATAATTTATGGGATTAGGTTACAAATTATTAGT-TTTAGTGTATT-GTGTTATTGTG
122308721 ATTT-
64 ATTTG
122308725 TTTTAG-TAATAAT
1 TTTT-GTTAATAAT
122308738 ATATTTTAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
66 15 0.22
68 31 0.46
69 21 0.31
70 1 0.01
ACGTcount: A:0.24, C:0.01, G:0.18, T:0.57
Consensus pattern (68 bp):
TTTTGTTAATAATTTATGGGATTAGGTTACAAATTATTAGTTTTAGTGTATTGTGTTATTGTGAT
TTG
Found at i:122308890 original size:115 final size:114
Alignment explanation
Indices: 122308765--122309099 Score: 473
Period size: 115 Copynumber: 2.9 Consensus size: 114
122308755 TTTTATAGTT
* *
122308765 GATTAGGTTATATAAAATGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
122308830 TAATATATTTAAAAAATAATAATTTTATAGCTATTTTATTAGTAATTTAA
66 TAATATATTTAAAAAA-AATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
122308880 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGCGTATTGT-AATTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
*
122308944 TAATATATTTTAAAAAAAAT-ATTTTAGAGCTATTTTATTAGTAATTTAA
66 TAATATA-TTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
122308993 AATTAGATTATAT--ATTGTTAGTGTTTAGTGGTTTAGTGTGTATTAGTGTATTGTGATTTATTT
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTA--GTGTATTAGTGTATTGTG----A-TT
* *
122309056 TTTTTAGTAATGTATTT-AAAAAAATAATTTTATAGTTATTTTAT
59 TTTTTAGTAATATATTTAAAAAAAATAATTTTATAGCTATTTTAT
122309100 GTTAGTATAT
Statistics
Matches: 198, Mismatches: 12, Indels: 17
0.87 0.05 0.07
Matches are distributed among these distances:
111 22 0.11
113 55 0.28
114 19 0.10
115 60 0.30
117 8 0.04
118 20 0.10
119 14 0.07
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.51
Consensus pattern (114 bp):
GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
TAATATATTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
Found at i:122309174 original size:15 final size:15
Alignment explanation
Indices: 122309154--122309184 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
122309144 TTGTGATTTT
122309154 TAATGTAATTTTATA
1 TAATGTAATTTTATA
122309169 TAATGTAATTTTATA
1 TAATGTAATTTTATA
122309184 T
1 T
122309185 TATTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (15 bp):
TAATGTAATTTTATA
Found at i:122310968 original size:33 final size:33
Alignment explanation
Indices: 122310947--122311015 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
122310937 TGCTCTTTCT
*
122310947 GGCCCGTATCCACCGCCGTACTCTACTCCTCCC
1 GGCCCATATCCACCGCCGTACTCTACTCCTCCC
* * * *
122310980 GGCCCATATCCACCGCCATATTCTAGTCCTCTC
1 GGCCCATATCCACCGCCGTACTCTACTCCTCCC
122311013 GGC
1 GGC
122311016 TCAAGTTCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.14, C:0.46, G:0.16, T:0.23
Consensus pattern (33 bp):
GGCCCATATCCACCGCCGTACTCTACTCCTCCC
Found at i:122313318 original size:75 final size:74
Alignment explanation
Indices: 122313197--122313368 Score: 216
Period size: 75 Copynumber: 2.4 Consensus size: 74
122313187 TCCATGGCAA
** *
122313197 AGTGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTA
1 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-
*
122313257 T-CCATACTG
65 TCCCATACCG
122313266 AGCTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
1 AG-TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
122313331 TCCCATACCG
65 TCCCATACCG
*
122313341 AGT-TAAAAATGTAGGTATGGTATT-TCAA
1 AGTGT-GAAATGTAGGTATGGTATTATCAA
122313369 TGAGGAAAAC
Statistics
Matches: 90, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
69 2 0.02
70 18 0.20
73 9 0.10
74 20 0.22
75 41 0.46
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (74 bp):
AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTT
CCCATACCG
Found at i:122313337 original size:35 final size:35
Alignment explanation
Indices: 122313202--122313366 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
122313192 GGCAAAGTGT
* **
122313202 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
122313237 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
122313272 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
122313312 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
122313347 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
122313367 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 8, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
34 19 0.16
35 66 0.57
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:122320811 original size:75 final size:75
Alignment explanation
Indices: 122320692--122320862 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
122320682 CATGGCAAAG
** *
122320692 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
122320751 CCATACTGAGC
65 CCATACCGAGC
122320762 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
122320827 CATACCGAGT
66 CATACCGAGC
***
122320837 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
122320863 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:122320830 original size:35 final size:35
Alignment explanation
Indices: 122320695--122320860 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
122320685 GGCAAAGTGT
* **
122320695 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
122320730 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
122320765 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
122320805 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
122320840 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
122320861 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:122322308 original size:182 final size:182
Alignment explanation
Indices: 122321995--122322347 Score: 607
Period size: 182 Copynumber: 1.9 Consensus size: 182
122321985 GGGGCGTTAC
* *
122321995 AGTATGTATTAGCAAATTTACTAATATGATTATATATATAGATATTTACGCATGTATCACATTAC
1 AGTATGTATTAGCAAATTCACTAATATGATTATATATATAGAGATTTACGCATGTATCACATTAC
* * *
122322060 AAAAACAAAAATTTAAATACTTATGCATAATAAAACATGTATCTCAATACAATAATAGTTATTTT
66 AAAAACAAAAATTTAAATACTTATACATAATAAAACATGTATCTCAATACAATAATAATCATTTT
122322125 CCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATTATCCGGATAA
131 CCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATTATCCGGATAA
* * * *
122322177 AGTATGTATTAGTAGATTCACTAATATGATTATATATATATAGATTTACGCATGTATCACATTAT
1 AGTATGTATTAGCAAATTCACTAATATGATTATATATATAGAGATTTACGCATGTATCACATTAC
* *
122322242 AAAAACAAAAATTTAAATATTTATACATAATAAAACATGTATCTCATTACAATAATAATCATTTT
66 AAAAACAAAAATTTAAATACTTATACATAATAAAACATGTATCTCAATACAATAATAATCATTTT
122322307 CCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAAT
131 CCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAAT
122322348 ATTTTAGTTT
Statistics
Matches: 160, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
182 160 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (182 bp):
AGTATGTATTAGCAAATTCACTAATATGATTATATATATAGAGATTTACGCATGTATCACATTAC
AAAAACAAAAATTTAAATACTTATACATAATAAAACATGTATCTCAATACAATAATAATCATTTT
CCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATTATCCGGATAA
Found at i:122322524 original size:216 final size:217
Alignment explanation
Indices: 122322164--122322741 Score: 992
Period size: 216 Copynumber: 2.7 Consensus size: 217
122322154 TTCTTATTTA
122322164 ATTATCCGGATAAAGTATGTATTAGTAGATTCACTAATATG---AT-TATATATATATAGATTTA
1 ATTATCCGGATAAAGTATGTATTAGTAGATTCACTAATATGATTATATATATATATATAGATTTA
* *
122322225 CGCATGTATCACATTATAAAAACAAAAATTTAAATATTTATACATAATAAAACATGTATCTCATT
66 CGCATGTATCACATTATAAAAACAAAAATTTAAATACTTATACCTAATAAAACATGTATCTCATT
* * *
122322290 ACAATAATAATCATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAG
131 ACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAA
*
122322355 TTTAATTTTAGTAATGCATA-T
196 TTTAATTTTAATAATGCATACT
*
122322376 ATTATCCAGATAAAGTATGTATTAGTAGATTCACTAATATGATTATATATATATATATAGATTTA
1 ATTATCCGGATAAAGTATGTATTAGTAGATTCACTAATATGATTATATATATATATATAGATTTA
122322441 CGCATGTATCACATTATAAAAACAAAAATTTAAATACTTATACCTAATAAAACATGTATCTCATT
66 CGCATGTATCACATTATAAAAACAAAAATTTAAATACTTATACCTAATAAAACATGTATCTCATT
122322506 ACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAA
131 ACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAA
122322571 TTTAATTTTAATAATGCATACT
196 TTTAATTTTAATAATGCATACT
* * *
122322593 -TTATCCGGATGAAGTATGTATTAGCAGATTCACTAATATGATTCTATATATATATAT--ATTTA
1 ATTATCCGGATAAAGTATGTATTAGTAGATTCACTAATATGATTATATATATATATATAGATTTA
* *
122322655 CGCATGTATCACATTACAAAAACAAAAATTTAAATACTTATACCTAATAAAACATATATCTCATT
66 CGCATGTATCACATTATAAAAACAAAAATTTAAATACTTATACCTAATAAAACATGTATCTCATT
122322720 ACAATAATAGTTATTTTCCAAA
131 ACAATAATAGTTATTTTCCAAA
122322742 AATAAGTTAA
Statistics
Matches: 348, Mismatches: 13, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
212 40 0.11
214 90 0.26
215 2 0.01
216 215 0.62
217 1 0.00
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (217 bp):
ATTATCCGGATAAAGTATGTATTAGTAGATTCACTAATATGATTATATATATATATATAGATTTA
CGCATGTATCACATTATAAAAACAAAAATTTAAATACTTATACCTAATAAAACATGTATCTCATT
ACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTTAATATTTTAA
TTTAATTTTAATAATGCATACT
Found at i:122326505 original size:16 final size:17
Alignment explanation
Indices: 122326484--122326516 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
122326474 TCAATCTTTT
122326484 ATTTTT-TAAATTTTAA
1 ATTTTTATAAATTTTAA
*
122326500 ATTTTTATAATTTTTAA
1 ATTTTTATAAATTTTAA
122326517 TAATTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTTATAAATTTTAA
Found at i:122330150 original size:43 final size:43
Alignment explanation
Indices: 122330102--122330189 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
122330092 CAGGGCTGGT
* *
122330102 TGTTGTCAACTGAAAACTTTCACCTATAGTTCAGTCAGTCGGC
1 TGTTGTCAACTGAAAACTATCACCTAGAGTTCAGTCAGTCGGC
* *
122330145 TGTTGTCAACTGACAACTATCACCTAGGGTTCAGTCAGTCGGC
1 TGTTGTCAACTGAAAACTATCACCTAGAGTTCAGTCAGTCGGC
122330188 TG
1 TG
122330190 AAGATTTTAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (43 bp):
TGTTGTCAACTGAAAACTATCACCTAGAGTTCAGTCAGTCGGC
Found at i:122330559 original size:11 final size:11
Alignment explanation
Indices: 122330543--122330576 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
122330533 GACTTGATTC
122330543 AAAAAAATTGA
1 AAAAAAATTGA
122330554 AAAAAAATT-A
1 AAAAAAATTGA
122330564 TAAAAAAATTGA
1 -AAAAAAATTGA
122330576 A
1 A
122330577 TTTCTAGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 1 0.05
11 19 0.90
12 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (11 bp):
AAAAAAATTGA
Found at i:122333978 original size:29 final size:28
Alignment explanation
Indices: 122333945--122334022 Score: 66
Period size: 29 Copynumber: 2.7 Consensus size: 28
122333935 CTTTTCATAA
* * *
122333945 ATTTAAAATTTGAAATTTAATTTTTTTAT
1 ATTT-AAATTTAAAATTTAATCTCTTTAT
**
122333974 ATTTATTTTTAAGAATTTAATCTCTTTATT
1 ATTTAAATTTAA-AATTTAATCTCTTTA-T
* *
122334004 TTTTAAATTTCAAATTTAA
1 ATTTAAATTTAAAATTTAA
122334023 ATCTAAAAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
28 5 0.13
29 24 0.63
30 9 0.24
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.58
Consensus pattern (28 bp):
ATTTAAATTTAAAATTTAATCTCTTTAT
Found at i:122335584 original size:23 final size:22
Alignment explanation
Indices: 122335560--122335603 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
122335550 TAATAATATG
122335560 TTTTAATATAACAAATTAAAGTGT
1 TTTTAA-ATAA-AAATTAAAGTGT
*
122335584 TTTTGAATAAAAATTAAAGT
1 TTTTAAATAAAAATTAAAGT
122335604 TGAACAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 4 0.21
24 5 0.26
ACGTcount: A:0.48, C:0.02, G:0.09, T:0.41
Consensus pattern (22 bp):
TTTTAAATAAAAATTAAAGTGT
Found at i:122337067 original size:19 final size:19
Alignment explanation
Indices: 122337045--122337088 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
122337035 AATATACATC
122337045 AAAA-AAGAATTTTCTTTAT
1 AAAATAAGAATTTT-TTTAT
*
122337064 AAAATAATAATTTTTTTAT
1 AAAATAAGAATTTTTTTAT
*
122337083 ACAATA
1 AAAATA
122337089 TTGAAGGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (19 bp):
AAAATAAGAATTTTTTTAT
Found at i:122339721 original size:21 final size:21
Alignment explanation
Indices: 122339694--122339735 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
122339684 ACATGCATAT
122339694 ATATATAAATACAAGTATTAGGA
1 ATATAT-AATACAA-TATTAGGA
*
122339717 ATATATAATATAATATTAG
1 ATATATAATACAATATTAG
122339736 AGGTATACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 6 0.33
23 6 0.33
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (21 bp):
ATATATAATACAATATTAGGA
Found at i:122340037 original size:26 final size:25
Alignment explanation
Indices: 122340008--122340056 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
122339998 ATATATATAT
122340008 TAAGATATAT-ATATATATATAAATGA
1 TAAGATATATAATA-ATA-ATAAATGA
*
122340034 TAAGATCTATAATAATAATAAAT
1 TAAGATATATAATAATAATAAAT
122340057 ACAATACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 6 0.29
26 12 0.57
27 3 0.14
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (25 bp):
TAAGATATATAATAATAATAAATGA
Found at i:122340542 original size:14 final size:15
Alignment explanation
Indices: 122340525--122340557 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
122340515 AAAAGAGAGA
122340525 AAAGGAGAGGGGA-G
1 AAAGGAGAGGGGAGG
122340539 AAAGGAGAGGGGAGG
1 AAAGGAGAGGGGAGG
122340554 AAAG
1 AAAG
122340558 AAAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (15 bp):
AAAGGAGAGGGGAGG
Found at i:122340580 original size:54 final size:55
Alignment explanation
Indices: 122340497--122340608 Score: 217
Period size: 54 Copynumber: 2.1 Consensus size: 55
122340487 TTGTGAGGTG
122340497 GGAAAGAAAAAAAAAAAAAAAAGAGAGAAAAGGAGAGGGGAGAAAGGAGAGGGGA
1 GGAAAGAAAAAAAAAAAAAAAAGAGAGAAAAGGAGAGGGGAGAAAGGAGAGGGGA
122340552 GGAAAG-AAAAAAAAAAAAAAAGAGAGAAAAGGAGAGGGGAGAAAGGAGAGGGGA
1 GGAAAGAAAAAAAAAAAAAAAAGAGAGAAAAGGAGAGGGGAGAAAGGAGAGGGGA
122340606 GGA
1 GGA
122340609 GAGAGGGCTC
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 51 0.89
55 6 0.11
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (55 bp):
GGAAAGAAAAAAAAAAAAAAAAGAGAGAAAAGGAGAGGGGAGAAAGGAGAGGGGA
Found at i:122340615 original size:12 final size:14
Alignment explanation
Indices: 122340579--122340606 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
122340569 AAAAGAGAGA
122340579 AAAGGAGAGGGGAG
1 AAAGGAGAGGGGAG
122340593 AAAGGAGAGGGGAG
1 AAAGGAGAGGGGAG
122340607 GAGAGAGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (14 bp):
AAAGGAGAGGGGAG
Found at i:122341960 original size:65 final size:68
Alignment explanation
Indices: 122341807--122341983 Score: 236
Period size: 65 Copynumber: 2.6 Consensus size: 68
122341797 TTGAGACGTA
* *
122341807 GAAATTAAAAGGTTCAACTCACCTCTCGCAATATGAGTTAATAATTTTGAAAACGTAGACTTTCG
1 GAAATT-AAAGGCTCAACTCACCTCTCGCAATATGAGTTAAT-ACTTTGAAAACGTAGAC-TTCG
122341872 AAAAAC
63 AAAAAC
* *
122341878 GAAAATTAAAGGCTCAACTCACCTCTCGCAATGTGAGTTGAT-CTTTGAAAA-GTAAGA-TT-GA
1 G-AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTAATACTTTGAAAACGT-AGACTTCGA
122341939 AAAAC
64 AAAAC
*
122341944 GAAATTAAAGGCTCAACTCACCTCTCGCAATATGAATTAA
1 GAAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTAA
122341984 CTTTTGGAAA
Statistics
Matches: 97, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
65 36 0.37
66 8 0.08
67 2 0.02
68 2 0.02
69 11 0.11
71 33 0.34
72 5 0.05
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (68 bp):
GAAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTAATACTTTGAAAACGTAGACTTCGAAA
AAC
Found at i:122342042 original size:72 final size:72
Alignment explanation
Indices: 122341952--122342122 Score: 229
Period size: 72 Copynumber: 2.4 Consensus size: 72
122341942 ACGAAATTAA
*
122341952 AGGCTCAACTCACCTCTCGCAATATGAATTAACTTTTGGAAAAATAGAATTGAAAATACCTTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAATTAA-TTTTGGAAAAATA-AATTGAAAATACCTTCAA
122342017 CGTG-C-CG
64 CGTGTCTCG
* * * * * * *
122342024 AGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAATTAATTTTGGAAAAATAAATTGAAAATACCTTCAACG
*
122342089 TGTCTTG
66 TGTCTCG
122342096 AGGCTCAACTCACCTCTCGCAATATGA
1 AGGCTCAACTCACCTCTCGCAATATGA
122342123 GCTGTTTTCT
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
70 20 0.23
71 12 0.14
72 54 0.63
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (72 bp):
AGGCTCAACTCACCTCTCGCAATATGAATTAATTTTGGAAAAATAAATTGAAAATACCTTCAACG
TGTCTCG
Found at i:122342272 original size:71 final size:70
Alignment explanation
Indices: 122342156--122342289 Score: 196
Period size: 71 Copynumber: 1.9 Consensus size: 70
122342146 TTAAAAAGCA
* * * *
122342156 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG-TTTTTG
122342221 AAACAT
65 AAACAT
* * *
122342227 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTT
122342290 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
70 5 0.09
71 51 0.91
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTTTTTGA
AACAT
Found at i:122342290 original size:159 final size:158
Alignment explanation
Indices: 122341999--122342538 Score: 987
Period size: 159 Copynumber: 3.4 Consensus size: 158
122341989 GGAAAAATAG
*
122341999 AATTGAAAATACCTTCAGCGTG-CC-GAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAATACC-TCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
122342062 AAACATAAATTGAAATTACCTTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
65 AAACATAAATTGAAATTACC-TCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
122342127 TTTTCTTGGAAAACATGAATTAAAAAGCAA
129 TTTTCTTGGAAAACATGAATTAAAAAGCAA
*
122342157 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTTACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
122342222 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTG-T
*
122342287 TTTCTTGGAAAACATGAATTAAAAAGGCAG
130 TTTCTTGGAAAACATGAATTAAAAA-GCAA
122342317 AATTG-AAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
122342381 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTG-T
122342446 TTTCTTGGAAAACATGAATTAAAAAGCAA
130 TTTCTTGGAAAACATGAATTAAAAAGCAA
122342475 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
122342539 GAAAAAACAA
Statistics
Matches: 373, Mismatches: 4, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
157 8 0.02
158 67 0.18
159 290 0.78
160 8 0.02
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (158 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGTT
TTCTTGGAAAACATGAATTAAAAAGCAA
Found at i:122342432 original size:71 final size:70
Alignment explanation
Indices: 122342317--122342448 Score: 210
Period size: 71 Copynumber: 1.9 Consensus size: 70
122342307 AAAAAGGCAG
* * *
122342317 AATTGAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAA
1 AATTGAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAA
122342382 ACATA
66 ACATA
* *
122342387 AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AATTGAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
122342449 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
70 8 0.14
71 48 0.86
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (70 bp):
AATTGAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAA
ACATA
Found at i:122355708 original size:12 final size:14
Alignment explanation
Indices: 122355672--122355699 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
122355662 AAAAGAGAGA
122355672 AAAGGAGAGGGGAG
1 AAAGGAGAGGGGAG
122355686 AAAGGAGAGGGGAG
1 AAAGGAGAGGGGAG
122355700 GAGAGAGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (14 bp):
AAAGGAGAGGGGAG
Found at i:122358385 original size:6 final size:6
Alignment explanation
Indices: 122358374--122358405 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
122358364 TGTTTGAGGG
122358374 TTTTGT TTTTGT TTTTGT TTTTG- TTTTGT TTT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTT
122358406 GTTCAAACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (6 bp):
TTTTGT
Found at i:122360166 original size:29 final size:29
Alignment explanation
Indices: 122360088--122360176 Score: 88
Period size: 31 Copynumber: 3.0 Consensus size: 29
122360078 ATTTAAATCA
* * *
122360088 AAATTAAAATTTCAAGTATACATTTGAACC
1 AAATT-AAAGTTCAAGTATATAATTGAACC
* * *
122360118 ACAATTAGAGTTTCACGTATATAATTGCACC
1 A-AATTAAAG-TTCAAGTATATAATTGAACC
*
122360149 AAATTAAAGTTCATGTATATAATTGAAC
1 AAATTAAAGTTCAAGTATATAATTGAAC
122360177 GTTAAATCAA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 17 0.35
30 10 0.21
31 21 0.44
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (29 bp):
AAATTAAAGTTCAAGTATATAATTGAACC
Found at i:122361303 original size:49 final size:49
Alignment explanation
Indices: 122361246--122361349 Score: 129
Period size: 49 Copynumber: 2.1 Consensus size: 49
122361236 GCATGAAACA
* * *
122361246 TGAACCCGTGACCATATAACCATTACT-AATTGGGGGCCCGAGTTATAGT
1 TGAACCCGTGAACACATAACCATT-CTCAATTGGGGCCCCGAGTTATAGT
* * *
122361295 TGAACCCGTGAACGCATAACCATTGTCAATTGGGGCCCCTAGTTATAGT
1 TGAACCCGTGAACACATAACCATTCTCAATTGGGGCCCCGAGTTATAGT
*
122361344 TAAACC
1 TGAACC
122361350 TATGGTCGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.02
49 46 0.98
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (49 bp):
TGAACCCGTGAACACATAACCATTCTCAATTGGGGCCCCGAGTTATAGT
Found at i:122362318 original size:30 final size:30
Alignment explanation
Indices: 122362284--122362340 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
122362274 AAATGAATAA
*
122362284 TGAAAATAA-AAAGGAATCGACAAAAAAAAT
1 TGAAAATAACAAAAGAATCGA-AAAAAAAAT
122362314 TGAAAATAACAAAAGAATCGAAAAAAA
1 TGAAAATAACAAAAGAATCGAAAAAAA
122362341 GACCAGGCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.68, C:0.07, G:0.12, T:0.12
Consensus pattern (30 bp):
TGAAAATAACAAAAGAATCGAAAAAAAAAT
Found at i:122374928 original size:69 final size:69
Alignment explanation
Indices: 122374793--122374928 Score: 191
Period size: 69 Copynumber: 2.0 Consensus size: 69
122374783 TTTAAGTATA
* * * * **
122374793 AAGATTAAATCTTAATTTTAAGTATAGTAGAGGGACCAAAAGTGATATTTGACCATTTTTGGATG
1 AAGATCAAATATTAATTTTAAGCATAGTAGAGGGACCAAAAATGATATTTGACCATTTTCCGATG
122374858 AATG
66 AATG
* * *
122374862 AAGATCAAATATTAATTTTAGGCATAGTAGAGGGACCAAAAATGGTATTTGACCATTTTCCTATG
1 AAGATCAAATATTAATTTTAAGCATAGTAGAGGGACCAAAAATGATATTTGACCATTTTCCGATG
122374927 AA
66 AA
122374929 AAGAAAAAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 58 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (69 bp):
AAGATCAAATATTAATTTTAAGCATAGTAGAGGGACCAAAAATGATATTTGACCATTTTCCGATG
AATG
Found at i:122375898 original size:21 final size:20
Alignment explanation
Indices: 122375874--122375912 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
122375864 TCAATTTACG
122375874 TTAAAAATTAAATTATAGAAA
1 TTAAAAATTAAATT-TAGAAA
**
122375895 TTAAATCTTAAATTTAGA
1 TTAAAAATTAAATTTAGA
122375913 CATTTTAGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (20 bp):
TTAAAAATTAAATTTAGAAA
Found at i:122378214 original size:31 final size:30
Alignment explanation
Indices: 122378166--122378235 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 30
122378156 ATACCAAAAT
*
122378166 TATATATG-AATTATGATTTAATGTGTAATTG
1 TATACATGAAATTATGATTT--TGTGTAATTG
* *
122378197 TATACATGAAATT-TGATTTTGTGTACTTT
1 TATACATGAAATTATGATTTTGTGTAATTG
122378226 TATACATGAA
1 TATACATGAA
122378236 TTTTTTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 18 0.51
31 13 0.37
32 4 0.11
ACGTcount: A:0.34, C:0.04, G:0.14, T:0.47
Consensus pattern (30 bp):
TATACATGAAATTATGATTTTGTGTAATTG
Found at i:122379463 original size:20 final size:20
Alignment explanation
Indices: 122379426--122379467 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
122379416 TGATTTATGT
122379426 TTAAAATTAAATTATAGAAA
1 TTAAAATTAAATTATAGAAA
122379446 TTAAATATTAAATT-TAGAAA
1 TTAAA-ATTAAATTATAGAAA
122379466 TT
1 TT
122379468 TTAGAGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (20 bp):
TTAAAATTAAATTATAGAAA
Found at i:122385653 original size:44 final size:45
Alignment explanation
Indices: 122385563--122385691 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
122385553 GACAGAACGA
*
122385563 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
122385609 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
122385653 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
122385692 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:122393035 original size:44 final size:45
Alignment explanation
Indices: 122392945--122393073 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
122392935 GACAGAACGA
*
122392945 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
122392991 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
122393035 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
122393074 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:122397589 original size:20 final size:20
Alignment explanation
Indices: 122397552--122397589 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
122397542 CAATTTACGT
122397552 TTAAAATTAAATTATAGACA
1 TTAAAATTAAATTATAGACA
122397572 TTAAATATTAAATT-TAGA
1 TTAAA-ATTAAATTATAGA
122397590 AATTTTAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (20 bp):
TTAAAATTAAATTATAGACA
Found at i:122397845 original size:2 final size:2
Alignment explanation
Indices: 122397838--122397881 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
122397828 TTCTTCTTAA
122397838 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122397880 AT
1 AT
122397882 CAAATAAGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122406229 original size:15 final size:15
Alignment explanation
Indices: 122406206--122406248 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
122406196 TACCTTCCAT
* *
122406206 TTTCCTTTCTCTTTC
1 TTTCTTTTCCCTTTC
122406221 TTTCTTTTCCCTTTC
1 TTTCTTTTCCCTTTC
122406236 TTCTCTTCTTCCC
1 TT-TCTT-TTCCC
122406249 CTCTCTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 15 0.62
16 4 0.17
17 5 0.21
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTCTTTTCCCTTTC
Found at i:122406250 original size:18 final size:16
Alignment explanation
Indices: 122406211--122406248 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
122406201 TCCATTTTCC
*
122406211 TTTCTCTTTCTT-TCT
1 TTTCCCTTTCTTCTCT
122406226 TTTCCCTTTCTTCTCT
1 TTTCCCTTTCTTCTCT
122406242 TCTTCCC
1 T-TTCCC
122406249 CTCTCTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
16 4 0.20
17 5 0.25
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTCCCTTTCTTCTCT
Found at i:122407602 original size:95 final size:91
Alignment explanation
Indices: 122407443--122407621 Score: 268
Period size: 95 Copynumber: 1.9 Consensus size: 91
122407433 GCGACATCTC
* *
122407443 TTTCTCCGGCTCTACGATACATCCACGCCTTATCCACACGTTGACTGGCAGGAGAGATAGCACAG
1 TTTCTCCGACTCTACGATACATCCACACCTTATCCACACGTTGACTGGCAGGAGAGATAGCACAG
122407508 GAGTTGTAAACACTACTGATACATAT
66 GAGTTGTAAACACTACTGATACATAT
* *
122407534 TTTCTCTGACTCTATGATACATCCACACCTTATTAGCTCACACGTTGACTGGCAGGAGAGATAGC
1 TTTCTCCGACTCTACGATACATCCACACCTTA-T--C-CACACGTTGACTGGCAGGAGAGATAGC
**
122407599 ACAGGAGTTGTAAGTACTACTGA
62 ACAGGAGTTGTAAACACTACTGA
122407622 CGCATACTAT
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
91 28 0.36
92 1 0.01
94 1 0.01
95 48 0.62
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (91 bp):
TTTCTCCGACTCTACGATACATCCACACCTTATCCACACGTTGACTGGCAGGAGAGATAGCACAG
GAGTTGTAAACACTACTGATACATAT
Found at i:122409216 original size:6 final size:6
Alignment explanation
Indices: 122409205--122409257 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
122409195 AAAAAAATAG
* * * *
122409205 TATATT TATATT CATATT TATATT CATATT ATAAATAG TATATT TATATT
1 TATATT TATATT TATATT TATATT TATATT -TATAT-T TATATT TATATT
122409255 TAT
1 TAT
122409258 CATAAGATTT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
6 30 0.81
7 7 0.19
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (6 bp):
TATATT
Found at i:122409223 original size:12 final size:12
Alignment explanation
Indices: 122409206--122409234 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
122409196 AAAAAATAGT
122409206 ATATTTATATTC
1 ATATTTATATTC
122409218 ATATTTATATTC
1 ATATTTATATTC
122409230 ATATT
1 ATATT
122409235 ATAAATAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
ATATTTATATTC
Found at i:122411625 original size:20 final size:20
Alignment explanation
Indices: 122411600--122411642 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
122411590 TTAGTATAAT
122411600 AAAGACAATTTAATTCTCTC
1 AAAGACAATTTAATTCTCTC
122411620 AAAGACAATTTAATTCTCTC
1 AAAGACAATTTAATTCTCTC
122411640 AAA
1 AAA
122411643 CACCTTTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAGACAATTTAATTCTCTC
Found at i:122412903 original size:29 final size:30
Alignment explanation
Indices: 122412863--122412929 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
122412853 TTAGAGTTTT
* *
122412863 ATGTGTATAATTG-CATCAAATTAAAGTTC
1 ATGTATATAATTGACATCAAATCAAAGTTC
* *
122412892 GTGTATATAATTGCACATTAAATCAAAGTTC
1 ATGTATATAATTG-ACATCAAATCAAAGTTC
122412923 ATGTATA
1 ATGTATA
122412930 ATTTTTAGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 11 0.35
31 20 0.65
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (30 bp):
ATGTATATAATTGACATCAAATCAAAGTTC
Found at i:122422624 original size:19 final size:19
Alignment explanation
Indices: 122422600--122422642 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
122422590 CTTAATGAGT
122422600 AATTGAACTTGAAATTGAA
1 AATTGAACTTGAAATTGAA
*
122422619 AATTGAACTTGAGATTGAA
1 AATTGAACTTGAAATTGAA
122422638 AATTG
1 AATTG
122422643 GGCTCAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.44, C:0.05, G:0.19, T:0.33
Consensus pattern (19 bp):
AATTGAACTTGAAATTGAA
Found at i:122424636 original size:33 final size:33
Alignment explanation
Indices: 122424599--122424801 Score: 370
Period size: 33 Copynumber: 6.2 Consensus size: 33
122424589 ATTAAATGGT
*
122424599 GCTGGCGCGGGCGAGTGTGTACCAGGTGAAGGG
1 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
122424632 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
1 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
*
122424665 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGA
1 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
* *
122424698 GCTGGCTCGGGCGAGTGTATACCGGGTGAAGGG
1 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
122424731 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
1 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
122424764 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
1 GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
122424797 GCTGG
1 GCTGG
122424802 GGCTGGGGCT
Statistics
Matches: 163, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 163 1.00
ACGTcount: A:0.13, C:0.18, G:0.53, T:0.16
Consensus pattern (33 bp):
GCTGGCGCGGGCGAGTGTGTACCGGGTGAAGGG
Found at i:122427465 original size:21 final size:21
Alignment explanation
Indices: 122427441--122427538 Score: 66
Period size: 21 Copynumber: 5.0 Consensus size: 21
122427431 AAGTCTAGCT
*
122427441 GAAGCACATAAGTGCTAAACA
1 GAAGCACAGAAGTGCTAAACA
*
122427462 GAAGC-CCGAAG-GCT-AACTA
1 GAAGCACAGAAGTGCTAAAC-A
* *
122427481 -AAGCACACAGGTGCTAAACA
1 GAAGCACAGAAGTGCTAAACA
* *
122427501 GAAGC-CCGAAG-GCT-AACT
1 GAAGCACAGAAGTGCTAAACA
* *
122427519 GAATCACATAAGTGCTAAAC
1 GAAGCACAGAAGTGCTAAAC
122427539 GAAAGCCCGA
Statistics
Matches: 57, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
18 14 0.25
19 14 0.25
20 14 0.25
21 15 0.26
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.13
Consensus pattern (21 bp):
GAAGCACAGAAGTGCTAAACA
Found at i:122427485 original size:39 final size:39
Alignment explanation
Indices: 122427423--122427562 Score: 201
Period size: 39 Copynumber: 3.6 Consensus size: 39
122427413 ATCGTGATCT
* * *
122427423 GAAGCCTGAAGTCTAGCTGAAGCACATAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACA
* * *
122427462 GAAGCCCGAAGGCTAACTAAAGCACACAGGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACA
*
122427501 GAAGCCCGAAGGCTAACTGAATCACATAAGTGCTAAAC-
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACA
122427539 GAAAGCCCGAAGGCTAACTGAAGC
1 G-AAGCCCGAAGGCTAACTGAAGC
122427563 TCATCAGAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 1 0.01
39 88 0.99
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACA
Found at i:122427599 original size:21 final size:21
Alignment explanation
Indices: 122427575--122427646 Score: 119
Period size: 21 Copynumber: 3.4 Consensus size: 21
122427565 ATCAGAGCTG
122427575 AACTGAAACCCTAAAAGGGTT
1 AACTGAAACCCTAAAAGGGTT
*
122427596 AACTGAAACCCCAAAAGGGTT
1 AACTGAAACCCTAAAAGGGTT
122427617 AACTGAAA-CCTCAAAAGGGTT
1 AACTGAAACCCT-AAAAGGGTT
122427638 AACTGAAAC
1 AACTGAAAC
122427647 TCATATGAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
20 2 0.04
21 45 0.96
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.17
Consensus pattern (21 bp):
AACTGAAACCCTAAAAGGGTT
Found at i:122427658 original size:20 final size:21
Alignment explanation
Indices: 122427575--122427660 Score: 95
Period size: 21 Copynumber: 4.1 Consensus size: 21
122427565 ATCAGAGCTG
*
122427575 AACTGAAACC-CTAAAAGGGTT
1 AACTGAAACCTC-AAAAGAGTT
* *
122427596 AACTGAAACCCCAAAAGGGTT
1 AACTGAAACCTCAAAAGAGTT
*
122427617 AACTGAAACCTCAAAAGGGTT
1 AACTGAAACCTCAAAAGAGTT
* *
122427638 AACTGAAA-CTCATATGAGTT
1 AACTGAAACCTCAAAAGAGTT
122427658 AAC
1 AAC
122427661 GGAAGCTCGT
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
20 12 0.20
21 47 0.78
22 1 0.02
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (21 bp):
AACTGAAACCTCAAAAGAGTT
Found at i:122432395 original size:29 final size:29
Alignment explanation
Indices: 122432363--122432439 Score: 66
Period size: 31 Copynumber: 2.6 Consensus size: 29
122432353 GCATTAATAT
*
122432363 ACATTAACTTTAATTTGGTGCAATTATAC
1 ACATTAACTTTAATTTGGTGCAAATATAC
* * * *
122432392 ACATGAAACTCTAATTGTGGTTCAAATGTAC
1 ACAT-TAACTTTAATT-TGGTGCAAATATAC
122432423 AC-TTGAAACTTTAATTT
1 ACATT--AACTTTAATTT
122432440 TGATTTAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
29 4 0.11
30 11 0.30
31 22 0.59
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (29 bp):
ACATTAACTTTAATTTGGTGCAAATATAC
Found at i:122436483 original size:29 final size:30
Alignment explanation
Indices: 122436435--122436514 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 30
122436425 GAATTGGATC
* * *
122436435 AAATCAAAATTTTATATATAAAATTGCACA-
1 AAATC-AAATTTCATGTATAAAATTACACAT
*
122436465 AAATCAAATTTCATGTATACAATTACACATT
1 AAATCAAATTTCATGTATAAAATTACACA-T
122436496 AAATCATAA-TTCATGTATA
1 AAATCA-AATTTCATGTATA
122436515 GTTTTGGTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
29 20 0.47
30 5 0.12
31 16 0.37
32 2 0.05
ACGTcount: A:0.49, C:0.12, G:0.04, T:0.35
Consensus pattern (30 bp):
AAATCAAATTTCATGTATAAAATTACACAT
Found at i:122444084 original size:50 final size:50
Alignment explanation
Indices: 122443984--122444086 Score: 125
Period size: 50 Copynumber: 2.1 Consensus size: 50
122443974 GAGGGGTTTA
* * * *
122443984 TTTTCTTTCCACCGGAAGGACATGAGGTAGGTTGGGGATTGTTACGGGGT
1 TTTTCTTTCCACCGGAAGGACATGAAGTAGGCTGGAGATTGTTACAGGGT
* * * **
122444034 TTTTCTTTCTATCGGAAGGATATGAAGTAGGCTGGAGATTGTTGTAGGGT
1 TTTTCTTTCCACCGGAAGGACATGAAGTAGGCTGGAGATTGTTACAGGGT
122444084 TTT
1 TTT
122444087 GTTGGTTAAG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.19, C:0.11, G:0.33, T:0.37
Consensus pattern (50 bp):
TTTTCTTTCCACCGGAAGGACATGAAGTAGGCTGGAGATTGTTACAGGGT
Found at i:122451794 original size:2 final size:2
Alignment explanation
Indices: 122451787--122451818 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
122451777 GTTGAAATTA
122451787 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
122451819 ATTAAGTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:122457406 original size:14 final size:13
Alignment explanation
Indices: 122457387--122457424 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
122457377 AGTTAATGTT
122457387 TAATTATATTAGGA
1 TAATTAT-TTAGGA
*
122457401 TAATTATTAAGGA
1 TAATTATTTAGGA
122457414 TAATTATTTAG
1 TAATTATTTAG
122457425 ATTTAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAATTATTTAGGA
Found at i:122457453 original size:10 final size:10
Alignment explanation
Indices: 122457438--122457489 Score: 68
Period size: 10 Copynumber: 5.1 Consensus size: 10
122457428 TAAATTTAGG
122457438 ATTTATTTTT
1 ATTTATTTTT
*
122457448 ATTTATCTTT
1 ATTTATTTTT
*
122457458 AATTATTTTT
1 ATTTATTTTT
*
122457468 ATTTATTTGT
1 ATTTATTTTT
122457478 ATTTATCTTTT
1 ATTTAT-TTTT
122457489 A
1 A
122457490 GAATTTAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:122460059 original size:29 final size:29
Alignment explanation
Indices: 122460026--122460083 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
122460016 TTAAGCACTA
* *
122460026 TAAAAAGATTTGACC-CTATTTGAGTATT
1 TAAAAAAAATTGACCTCTATTTGAGTATT
* *
122460054 TAAAAAAAATTGGCCTTTATTTGAGTATT
1 TAAAAAAAATTGACCTCTATTTGAGTATT
122460083 T
1 T
122460084 TGAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (29 bp):
TAAAAAAAATTGACCTCTATTTGAGTATT
Found at i:122460634 original size:17 final size:19
Alignment explanation
Indices: 122460612--122460652 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
122460602 TTAAATATAT
122460612 AAAAATA-TTTAT-ATTTA
1 AAAAATATTTTATAATTTA
122460629 AAAAATATTTTTATAATTTA
1 AAAAATA-TTTTATAATTTA
122460649 AAAA
1 AAAA
122460653 GAAAAAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.33
19 5 0.24
20 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAAATATTTTATAATTTA
Found at i:122466579 original size:41 final size:41
Alignment explanation
Indices: 122466528--122466609 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
122466518 TAAAATTCAT
122466528 GTATAATTTTGATACTATCCTTATTTTTATAATACAAATTG
1 GTATAATTTTGATACTATCCTTATTTTTATAATACAAATTG
122466569 GTATAATTTTGATACTATCCTTATTTTTATAATACAAATTG
1 GTATAATTTTGATACTATCCTTATTTTTATAATACAAATTG
122466610 TTTTACTTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (41 bp):
GTATAATTTTGATACTATCCTTATTTTTATAATACAAATTG
Found at i:122470525 original size:46 final size:46
Alignment explanation
Indices: 122470458--122470685 Score: 341
Period size: 46 Copynumber: 5.0 Consensus size: 46
122470448 AGTGTGCTCT
122470458 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
122470504 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
122470550 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
122470596 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
122470642 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
122470686 TCATGTCAAA
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 167 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:122472021 original size:21 final size:22
Alignment explanation
Indices: 122471988--122472038 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
122471978 TTTTTATGTT
* * *
122471988 AAAAGAGACGGAGAA-TGGAGG
1 AAAATAGACGGAGAAGTAGAAG
*
122472009 AAAATAGAGGGAGAAGTAGAAG
1 AAAATAGACGGAGAAGTAGAAG
122472031 AAAATAGA
1 AAAATAGA
122472039 AAGTAAAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.55, C:0.02, G:0.35, T:0.08
Consensus pattern (22 bp):
AAAATAGACGGAGAAGTAGAAG
Found at i:122472053 original size:19 final size:21
Alignment explanation
Indices: 122472026--122472080 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 21
122472016 AGGGAGAAGT
*
122472026 AGAAGAAAATAGAAAG-T-AA
1 AGAATAAAATAGAAAGTTAAA
122472045 AGAATAAAAT-GAAAAGTTAAA
1 AGAATAAAATAG-AAAGTTAAA
122472066 AGAATATAAA-AGAAA
1 AGAATA-AAATAGAAA
122472081 AAATTTAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
18 1 0.03
19 13 0.43
20 1 0.03
21 11 0.37
22 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.15
Consensus pattern (21 bp):
AGAATAAAATAGAAAGTTAAA
Found at i:122477362 original size:2 final size:2
Alignment explanation
Indices: 122477355--122477383 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
122477345 ACTACGGTAA
122477355 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
122477384 ACACACACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:122480158 original size:23 final size:27
Alignment explanation
Indices: 122480112--122480168 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
122480102 TGACCCCAGC
122480112 AATTAAAGAGCAATATAATAAATAAAT
1 AATTAAAGAGCAATATAATAAATAAAT
*
122480139 AATTAAAGAGCAATATAATAAATACAT
1 AATTAAAGAGCAATATAATAAATAAAT
122480166 AAT
1 AAT
122480169 ATCCCATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.26
Consensus pattern (27 bp):
AATTAAAGAGCAATATAATAAATAAAT
Found at i:122485050 original size:25 final size:25
Alignment explanation
Indices: 122485017--122485074 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
122485007 AAAAATATTA
*
122485017 AAAATATTTAT-AGTTTTTATAATTTT
1 AAAA-ATTTATAAATTTTTA-AATTTT
* *
122485043 AATAATTTTTAAATTTTTAAATTTT
1 AAAAATTTATAAATTTTTAAATTTT
122485068 AAAAATT
1 AAAAATT
122485075 AATTACTAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 17 0.63
26 10 0.37
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (25 bp):
AAAAATTTATAAATTTTTAAATTTT
Found at i:122485057 original size:8 final size:9
Alignment explanation
Indices: 122485023--122485067 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
122485013 ATTAAAAATA
*
122485023 TTTATAGTT
1 TTTATAATT
122485032 TTTATAATT
1 TTTATAATT
*
122485041 TTAATAATT
1 TTTATAATT
122485050 TTTA-AATT
1 TTTATAATT
122485058 TTTA-AATT
1 TTTATAATT
122485066 TT
1 TT
122485068 AAAAATTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
8 14 0.42
9 19 0.58
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTATAATT
Found at i:122485903 original size:7 final size:7
Alignment explanation
Indices: 122485893--122485917 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
122485883 AATATAAATA
122485893 ATTTAAT
1 ATTTAAT
122485900 ATTTAAT
1 ATTTAAT
122485907 ATTTAAT
1 ATTTAAT
122485914 ATTT
1 ATTT
122485918 TAGTATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTAAT
Found at i:122486590 original size:17 final size:17
Alignment explanation
Indices: 122486566--122486606 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
122486556 TATAATTTTT
122486566 AATAATTTAATTAAAAA
1 AATAATTTAATTAAAAA
* **
122486583 ATTAATTTTTTTAAAAA
1 AATAATTTAATTAAAAA
122486600 AATAATT
1 AATAATT
122486607 CATTGTTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAATTTAATTAAAAA
Found at i:122487011 original size:17 final size:17
Alignment explanation
Indices: 122486964--122487004 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
122486954 CATCGACATT
* **
122486964 TTTTTAAGATTTTGGGG
1 TTTTTAAGAGTTTAAGG
122486981 TTTTTAAGAGTTTAAGG
1 TTTTTAAGAGTTTAAGG
122486998 TTTTTAA
1 TTTTTAA
122487005 AGGTTTAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.54
Consensus pattern (17 bp):
TTTTTAAGAGTTTAAGG
Found at i:122488534 original size:33 final size:33
Alignment explanation
Indices: 122488480--122488568 Score: 110
Period size: 33 Copynumber: 2.7 Consensus size: 33
122488470 ATTAAAATTA
* *
122488480 ATAATAA-AACAATAACAACAAAATAGTAACAGT
1 ATAATAACAA-AATGACAACAAAATAGTAACAAT
*
122488513 ATAA-AAGCAAAATGACAACAAAATAGTAGCAAT
1 ATAATAA-CAAAATGACAACAAAATAGTAACAAT
*
122488546 ATAATAACAAAATGACAATAAAA
1 ATAATAACAAAATGACAACAAAA
122488569 CAACTAATTC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
32 2 0.04
33 43 0.88
34 4 0.08
ACGTcount: A:0.64, C:0.11, G:0.08, T:0.17
Consensus pattern (33 bp):
ATAATAACAAAATGACAACAAAATAGTAACAAT
Found at i:122490543 original size:22 final size:21
Alignment explanation
Indices: 122490502--122490543 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
122490492 GGCTGTGTGA
*
122490502 GCCACACGGCCTAAGACATGG
1 GCCACACGGCCAAAGACATGG
*
122490523 GCCACACGGTCAAGAGACATG
1 GCCACACGGCCAA-AGACATG
122490544 CCCGTGTCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.31, C:0.31, G:0.29, T:0.10
Consensus pattern (21 bp):
GCCACACGGCCAAAGACATGG
Found at i:122491741 original size:27 final size:26
Alignment explanation
Indices: 122491705--122491769 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 26
122491695 ATTAAAACAC
122491705 ATAATCGGGAAGCACTCTAT-TGAGCCAT
1 ATAA-CGGGAAGC-CTC-ATGTGAGCCAT
122491733 ATAACGGGAAG-CTCATGTGAGCCAT
1 ATAACGGGAAGCCTCATGTGAGCCAT
* *
122491758 GTAACAGGAAGC
1 ATAACGGGAAGC
122491770 TTATCCAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 2 0.06
25 20 0.61
27 7 0.21
28 4 0.12
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (26 bp):
ATAACGGGAAGCCTCATGTGAGCCAT
Found at i:122492435 original size:21 final size:21
Alignment explanation
Indices: 122492411--122492451 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
122492401 AGTAAATTTA
*
122492411 ATTCAATTTAATACAATTCAT
1 ATTCAATTCAATACAATTCAT
*
122492432 ATTCAATTCAATCCAATTCA
1 ATTCAATTCAATACAATTCA
122492452 CATCTTAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (21 bp):
ATTCAATTCAATACAATTCAT
Found at i:122494940 original size:41 final size:40
Alignment explanation
Indices: 122494839--122494974 Score: 155
Period size: 40 Copynumber: 3.4 Consensus size: 40
122494829 TCGATATATA
* * *
122494839 GCACACTAAGTGCCGTACATAGTCGGAGCTATCTTAAATC
1 GCACACTAAGTGCCATATATAGTCGAAGCTATCTTAAATC
* * **
122494879 GCACACTAAGTGCCAAATATAGTCGAAGGTATCTTGATCTC
1 GCACACTAAGTGCCATATATAGTCGAAGCTATCTT-AAATC
* * * *
122494920 GCACACTAAGTGTCATATATAGTCGAAGCTATGTCAAATT
1 GCACACTAAGTGCCATATATAGTCGAAGCTATCTTAAATC
*
122494960 GCACATTAAGTGCCA
1 GCACACTAAGTGCCA
122494975 CAAATAACCG
Statistics
Matches: 78, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 45 0.58
41 33 0.42
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGTCGAAGCTATCTTAAATC
Found at i:122496753 original size:28 final size:28
Alignment explanation
Indices: 122496701--122496806 Score: 167
Period size: 28 Copynumber: 3.8 Consensus size: 28
122496691 TATTTTTTAA
* *
122496701 TAAATGACCCAATATTTTTACTTTTTGCG
1 TAAATGACCCAACATGTTTA-TTTTTGCG
*
122496730 TAAATGGCCCAACATGTTTATTTTTGCG
1 TAAATGACCCAACATGTTTATTTTTGCG
122496758 TAAATGACCCAACATGTTTATTTTTGCG
1 TAAATGACCCAACATGTTTATTTTTGCG
*
122496786 TAAATGACCCAATATGTTTAT
1 TAAATGACCCAACATGTTTAT
122496807 ACTTCTTTTT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
28 55 0.76
29 17 0.24
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (28 bp):
TAAATGACCCAACATGTTTATTTTTGCG
Found at i:122504171 original size:21 final size:20
Alignment explanation
Indices: 122504147--122504206 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
122504137 ACAAATATTA
122504147 AAAAATAGAAAATAAATACAT
1 AAAAATAGAAAA-AAATACAT
*
122504168 AAAAAT-GCATAAAAAATATAT
1 AAAAATAG-A-AAAAAATACAT
*
122504189 AAAATTTAGAAAAAAATA
1 AAAA-ATAGAAAAAAATA
122504207 TAAATTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
20 1 0.03
21 26 0.79
22 5 0.15
23 1 0.03
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.22
Consensus pattern (20 bp):
AAAAATAGAAAAAAATACAT
Found at i:122504813 original size:19 final size:18
Alignment explanation
Indices: 122504789--122504840 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
122504779 GTGTCTTTTT
122504789 TATTTTTTAATTTTTATA
1 TATTTTTTAATTTTTATA
*
122504807 -ATATTTTTCATTTTTATA
1 TAT-TTTTTAATTTTTATA
*
122504825 TATTATTTTGATTTTT
1 TATT-TTTTAATTTTT
122504841 TTAAAACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 2 0.07
18 15 0.52
19 12 0.41
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (18 bp):
TATTTTTTAATTTTTATA
Found at i:122504819 original size:18 final size:17
Alignment explanation
Indices: 122504784--122504828 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
122504774 TAAATGTGTC
122504784 TTTTT-TAT-TTTTTAA
1 TTTTTATATATTTTTAA
*
122504799 TTTTTATAATATTTTTCA
1 TTTTTAT-ATATTTTTAA
122504817 TTTTTATATATT
1 TTTTTATATATT
122504829 ATTTTGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 5 0.19
16 1 0.04
17 7 0.27
18 13 0.50
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTATATATTTTTAA
Found at i:122508854 original size:11 final size:11
Alignment explanation
Indices: 122508840--122508877 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
122508830 AATATTTTGA
122508840 ATTTTAAAATT
1 ATTTTAAAATT
122508851 ATTTTAAAA-T
1 ATTTTAAAATT
*
122508861 -TTTAAAAATT
1 ATTTTAAAATT
122508871 ATTTTAA
1 ATTTTAA
122508878 TTTTTATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 7 0.30
10 2 0.09
11 14 0.61
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
ATTTTAAAATT
Found at i:122508861 original size:19 final size:20
Alignment explanation
Indices: 122508839--122508877 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
122508829 AAATATTTTG
122508839 AATTTT-AAAATTATTTTAA
1 AATTTTAAAAATTATTTTAA
122508858 AATTTTAAAAATTATTTTAA
1 AATTTTAAAAATTATTTTAA
122508878 TTTTTATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATTTTAAAAATTATTTTAA
Found at i:122508882 original size:19 final size:20
Alignment explanation
Indices: 122508821--122508883 Score: 71
Period size: 18 Copynumber: 3.4 Consensus size: 20
122508811 AAATTTTAGT
* *
122508821 ATTTTTATAAA-TATTTTGA
1 ATTTTTAAAAATTATTTTAA
122508840 A-TTTT-AAAATTATTTTAA
1 ATTTTTAAAAATTATTTTAA
*
122508858 AATTTTAAAAATTATTTT-A
1 ATTTTTAAAAATTATTTTAA
122508877 ATTTTTA
1 ATTTTTA
122508884 TTGTGATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
17 3 0.08
18 12 0.32
19 12 0.32
20 11 0.29
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTTTAAAAATTATTTTAA
Found at i:122513195 original size:26 final size:24
Alignment explanation
Indices: 122513159--122513214 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 24
122513149 AAACCTAACC
122513159 AAAAAAAAAAAACCTAACCCCCCCA
1 AAAAAAAAAAAACCTAA-CCCCCCA
122513184 AAAAAAAGAAAAACCTAACCCCCCA
1 AAAAAAA-AAAAACCTAACCCCCCA
122513209 AAAAAA
1 AAAAAA
122513215 CTAAGAAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 20 0.67
26 10 0.33
ACGTcount: A:0.64, C:0.30, G:0.02, T:0.04
Consensus pattern (24 bp):
AAAAAAAAAAAACCTAACCCCCCA
Found at i:122516106 original size:23 final size:23
Alignment explanation
Indices: 122516024--122516110 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 23
122516014 CCTGATCAGT
122516024 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
*
122516046 A-ACGACACA-AGAGGTGCCTG--
1 ATACGACACATA-AAGTGCCTGAA
** *
122516066 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
*
122516089 ATATGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
122516111 TCGATAAAGC
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
20 2 0.04
21 32 0.60
22 1 0.02
23 18 0.34
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:122516507 original size:15 final size:15
Alignment explanation
Indices: 122516482--122516539 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
122516472 TCATATATGT
122516482 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
122516498 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
122516513 AATAATTTCAATCAA
1 TATAAATTCAATCAA
122516528 TATAAATTCAAT
1 TATAAATTCAAT
122516540 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:122517560 original size:4 final size:4
Alignment explanation
Indices: 122517551--122517581 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
122517541 CCTTTTCTCC
122517551 CTTT CTTT CTTT CTTT CTTT CCTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT -CTTT CTTT CT
122517582 CCCCTGTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
CTTT
Found at i:122517652 original size:5 final size:5
Alignment explanation
Indices: 122517642--122517697 Score: 67
Period size: 5 Copynumber: 10.6 Consensus size: 5
122517632 TTACTTATTT
* *
122517642 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATATC
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
122517690 ATATA ATA
1 ATATA ATA
122517698 ACAATTTCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
5 33 0.75
6 7 0.16
7 4 0.09
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:122517658 original size:12 final size:12
Alignment explanation
Indices: 122517641--122517694 Score: 65
Period size: 12 Copynumber: 4.3 Consensus size: 12
122517631 TTTACTTATT
122517641 TATATAATATAA
1 TATATAATATAA
122517653 TATATAATATAATA
1 TATATAATAT-A-A
122517667 TACTATAATATAA
1 TA-TATAATATAA
*
122517680 TA-ATAATATCA
1 TATATAATATAA
122517691 TATA
1 TATA
122517695 ATAACAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
11 10 0.27
12 11 0.30
13 4 0.11
14 4 0.11
15 8 0.22
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATATAA
Found at i:122517829 original size:21 final size:22
Alignment explanation
Indices: 122517790--122517840 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
122517780 CATACAATTG
*
122517790 TTAAAATAATATTATAATATCA
1 TTAAAATAATATTACAATATCA
*
122517812 TTAATATAA-ATTACAATAT-A
1 TTAAAATAATATTACAATATCA
*
122517832 ATAAAATAA
1 TTAAAATAA
122517841 ATATATAGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 8 0.32
21 9 0.36
22 8 0.32
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (22 bp):
TTAAAATAATATTACAATATCA
Found at i:122518341 original size:46 final size:46
Alignment explanation
Indices: 122518181--122518347 Score: 219
Period size: 46 Copynumber: 3.6 Consensus size: 46
122518171 TGCTATAGTG
* *
122518181 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATGTCATGTTGCCATGGTA
** * *
122518227 TCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGCCATGGTA
* * * *
122518273 TCTTTTAACCATAGTTTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGCCATGGTA
*
122518319 TCTTTCAACCATGGTCTCACACATTTCAT
1 TCTTTCAACCATGGTCTTACACATTTCAT
122518348 TTCAGAAAAC
Statistics
Matches: 104, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 4 0.04
46 100 0.96
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGCCATGGTA
Found at i:122520669 original size:26 final size:26
Alignment explanation
Indices: 122520640--122520693 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
122520630 TAATTCATCA
122520640 ATTTTCCTTAGTTTCTAGATCATTCC
1 ATTTTCCTTAGTTTCTAGATCATTCC
122520666 ATTTTCCTTAGTTTCTAGATCATTCC
1 ATTTTCCTTAGTTTCTAGATCATTCC
122520692 AT
1 AT
122520694 CCTTAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.20, C:0.22, G:0.07, T:0.50
Consensus pattern (26 bp):
ATTTTCCTTAGTTTCTAGATCATTCC
Found at i:122522182 original size:48 final size:49
Alignment explanation
Indices: 122522130--122522222 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
122522120 GTAGCCCGAC
*
122522130 AATGATGGTTTACACTA-TTCAATATTTTACCA-TCTTGGATGGCTTGGA
1 AATGATGGTTTACACTATTTCAATATTCTACCATTC-TGGATGGCTTGGA
*
122522178 AATGATGGTTTGCACTATTTCAATATTCTACCATTCTGGATGGCT
1 AATGATGGTTTACACTATTTCAATATTCTACCATTCTGGATGGCT
122522223 CAAAAATGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
48 16 0.39
49 23 0.56
50 2 0.05
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (49 bp):
AATGATGGTTTACACTATTTCAATATTCTACCATTCTGGATGGCTTGGA
Found at i:122522230 original size:49 final size:48
Alignment explanation
Indices: 122522130--122522233 Score: 138
Period size: 49 Copynumber: 2.1 Consensus size: 48
122522120 GTAGCCCGAC
* ***
122522130 AATGATGGTTTACACTATTCAATATTTTACCATCTTGGATGGCTTGGA
1 AATGATGGTTTACACTATTCAATATTCTACCATCTTGGATGGCTCAAA
*
122522178 AATGATGGTTTGCACTATTTCAATATTCTACCAT-TCTGGATGGCTCAAA
1 AATGATGGTTTACACTA-TTCAATATTCTACCATCT-TGGATGGCTCAAA
122522227 AATGATG
1 AATGATG
122522234 ACTTTTATTG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
48 17 0.35
49 32 0.65
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (48 bp):
AATGATGGTTTACACTATTCAATATTCTACCATCTTGGATGGCTCAAA
Found at i:122526782 original size:21 final size:20
Alignment explanation
Indices: 122526752--122526807 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 20
122526742 AAGAAAAAAG
122526752 AAAAAAACTTATTTTTTGAA
1 AAAAAAACTTATTTTTTGAA
*
122526772 AAAAGAAACTTACTTTTTGAA
1 AAAA-AAACTTATTTTTTGAA
*
122526793 AAAAAAAGTTATTTT
1 AAAAAAACTTATTTT
122526808 GGAAAATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 13 0.41
21 19 0.59
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (20 bp):
AAAAAAACTTATTTTTTGAA
Found at i:122537236 original size:29 final size:30
Alignment explanation
Indices: 122537194--122537260 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 30
122537184 AGGAATGAAT
*
122537194 GTGCAAACCCTAGGTGTGTGAA-CCCTTAC
1 GTGCAAACCCTAGGTATGTGAACCCCTTAC
* * *
122537223 GTGCGAACCTTAGGTATGTGAACCCCTTAT
1 GTGCAAACCCTAGGTATGTGAACCCCTTAC
122537253 GTGCAAAC
1 GTGCAAAC
122537261 TATGTAGTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 19 0.59
30 13 0.41
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (30 bp):
GTGCAAACCCTAGGTATGTGAACCCCTTAC
Found at i:122547247 original size:18 final size:18
Alignment explanation
Indices: 122547224--122547261 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
122547214 CCACAATAAA
122547224 ATGGCAAGATGTATATAT
1 ATGGCAAGATGTATATAT
122547242 ATGGCAAGATGTATATAT
1 ATGGCAAGATGTATATAT
122547260 AT
1 AT
122547262 TACTTAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.34
Consensus pattern (18 bp):
ATGGCAAGATGTATATAT
Found at i:122548496 original size:77 final size:77
Alignment explanation
Indices: 122548369--122548527 Score: 300
Period size: 77 Copynumber: 2.1 Consensus size: 77
122548359 TAAAATTCAA
122548369 ATTTTCAAGCCGGTTTCACTATAGTCCTTTTAGGACCTCCTATTTCTAATTTCTACTATAAATTT
1 ATTTTCAAGCCGGTTTCACTATAGTCCTTTTAGGACCTCCTATTTCTAATTTCTACTATAAATTT
*
122548434 CAAAATTTATGC
66 CAAAATTTATAC
*
122548446 ATTTTCAAGCCGGTTTCACTATAGTCCTTTTAGGATCTCCTATTTCTAATTTCTACTATAAATTT
1 ATTTTCAAGCCGGTTTCACTATAGTCCTTTTAGGACCTCCTATTTCTAATTTCTACTATAAATTT
122548511 CAAAATTTATAC
66 CAAAATTTATAC
122548523 ATTTT
1 ATTTT
122548528 AATCTCTATT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
77 80 1.00
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.45
Consensus pattern (77 bp):
ATTTTCAAGCCGGTTTCACTATAGTCCTTTTAGGACCTCCTATTTCTAATTTCTACTATAAATTT
CAAAATTTATAC
Found at i:122557318 original size:112 final size:113
Alignment explanation
Indices: 122557164--122557401 Score: 381
Period size: 112 Copynumber: 2.1 Consensus size: 113
122557154 CTTAATACAA
* * * *
122557164 GTATGGATACATAGGGGTATTTTAGTAACTTTTCAATTGAGTTGATTCTC-CATAGACTTGTGAC
1 GTATAGATAGATAGGGGTATTTTAGTAACTTCTCAATTGAGTTGATACTCGC-TAGACTTGTGAC
*
122557228 ACCAACTCAACACCAGGCATAAACTCAGTTAGGGGCTTAATATAT-TAT
65 ACCAACTCAACACCAGGCATAAACTCAATTAGGGGCTTAATATATATAT
*
122557276 GTATAGATAGATAGGGGTATTTTAGTAACTTCTCAATTGAGTTGATACTCGCTAGACTTGTGATA
1 GTATAGATAGATAGGGGTATTTTAGTAACTTCTCAATTGAGTTGATACTCGCTAGACTTGTGACA
* *
122557341 CCAACTCAACATCAGGCATCAACTCAATTAGGGGCTTAATATATATAT
66 CCAACTCAACACCAGGCATAAACTCAATTAGGGGCTTAATATATATAT
122557389 GTATAGATAGATA
1 GTATAGATAGATA
122557402 AATATATATT
Statistics
Matches: 116, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
112 99 0.85
113 17 0.15
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (113 bp):
GTATAGATAGATAGGGGTATTTTAGTAACTTCTCAATTGAGTTGATACTCGCTAGACTTGTGACA
CCAACTCAACACCAGGCATAAACTCAATTAGGGGCTTAATATATATAT
Found at i:122557857 original size:27 final size:26
Alignment explanation
Indices: 122557827--122557880 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
122557817 ATAAGGTATT
*
122557827 ATAAAATAAATATT-AAATTTATTAAAA
1 ATAAAA-AAAT-TTAAAAATTATTAAAA
*
122557854 ATAAAAATATTTAAAAATTATTAAAA
1 ATAAAAAAATTTAAAAATTATTAAAA
122557880 A
1 A
122557881 CCATGAAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 2 0.08
26 16 0.67
27 6 0.25
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (26 bp):
ATAAAAAAATTTAAAAATTATTAAAA
Found at i:122558009 original size:10 final size:10
Alignment explanation
Indices: 122557966--122558012 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
122557956 TTTAGGCGTG
122557966 ATTTTTAATAA
1 ATTTTTAAT-A
**
122557977 ATTTTTAAGC
1 ATTTTTAATA
122557987 ATTTTTAAT-
1 ATTTTTAATA
122557996 ATTTTTAATA
1 ATTTTTAATA
122558006 ATTTTTA
1 ATTTTTA
122558013 TTACTTCTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 9 0.28
10 15 0.47
11 8 0.25
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:122558009 original size:19 final size:20
Alignment explanation
Indices: 122557966--122558012 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
122557956 TTTAGGCGTG
*
122557966 ATTTTTAATAAATTTTTAAGC
1 ATTTTTAAT-AATTTTTAAGA
*
122557987 ATTTTTAAT-ATTTTTAATA
1 ATTTTTAATAATTTTTAAGA
122558006 ATTTTTA
1 ATTTTTA
122558013 TTACTTCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 15 0.62
21 9 0.38
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTTTAATAATTTTTAAGA
Found at i:122558035 original size:3 final size:3
Alignment explanation
Indices: 122558022--122558053 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
122558012 ATTACTTCTT
122558022 ATA ATTA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA A
122558054 AATTTCATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:122562248 original size:17 final size:18
Alignment explanation
Indices: 122562215--122562249 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
122562205 TATTTATTTT
*
122562215 ATATTATAAAAATTAAAA
1 ATATTATAAAAAGTAAAA
122562233 ATATTAT-AAAAGTAAAA
1 ATATTATAAAAAGTAAAA
122562250 TTTAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
ATATTATAAAAAGTAAAA
Found at i:122563382 original size:23 final size:21
Alignment explanation
Indices: 122563335--122563406 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 21
122563325 TAATTTAATT
* *
122563335 TTTTTAAAATTATAAAAAATAA
1 TTTTTAAAATCATAAAATAT-A
*
122563357 TTTATTAAAATGATAAAATTATA
1 TTT-TTAAAATCATAAAA-TATA
**
122563380 TTTTTATTATCATAAAAATATA
1 TTTTTAAAATCAT-AAAATATA
122563402 TTTTT
1 TTTTT
122563407 TAATTTCGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
22 19 0.45
23 21 0.50
24 2 0.05
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (21 bp):
TTTTTAAAATCATAAAATATA
Found at i:122575123 original size:13 final size:13
Alignment explanation
Indices: 122575090--122575126 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
122575080 TCATCTATAC
122575090 AAAAAAAA-AAAA
1 AAAAAAAAGAAAA
122575102 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
*
122575115 AGAAAAAAGAAA
1 AAAAAAAAGAAA
122575127 GAGCTGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 8 0.35
13 15 0.65
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAAAA
Found at i:122578852 original size:2 final size:2
Alignment explanation
Indices: 122578845--122578873 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
122578835 TCGCTCCTTA
122578845 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
122578874 TAAAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:122583957 original size:30 final size:30
Alignment explanation
Indices: 122583923--122583983 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
122583913 AACAAACTGT
122583923 ATAAAGTAGTAAGGAATTGACAAAATGATC
1 ATAAAGTAGTAAGGAATTGACAAAATGATC
*
122583953 ATAAAGTAGTAAGGAATTGATAAAATGATC
1 ATAAAGTAGTAAGGAATTGACAAAATGATC
122583983 A
1 A
122583984 ATTTAGTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.51, C:0.05, G:0.20, T:0.25
Consensus pattern (30 bp):
ATAAAGTAGTAAGGAATTGACAAAATGATC
Found at i:122588156 original size:26 final size:27
Alignment explanation
Indices: 122588109--122588163 Score: 94
Period size: 27 Copynumber: 2.0 Consensus size: 27
122588099 AATAATTTAA
122588109 AAATATAAAAATATTCAAAAAAAAATT
1 AAATATAAAAATATTCAAAAAAAAATT
122588136 AAATATAAAAA-ATTCATAAAAAAAATT
1 AAATATAAAAATATTCA-AAAAAAAATT
122588163 A
1 A
122588164 GCATGAAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (27 bp):
AAATATAAAAATATTCAAAAAAAAATT
Found at i:122588160 original size:13 final size:13
Alignment explanation
Indices: 122588115--122588162 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
122588105 TTAAAAATAT
*
122588115 AAAAATATTCA-A
1 AAAAAAATTCATA
*
122588127 AAAAAAATTAAATA
1 AAAAAAATT-CATA
*
122588141 TAAAAAATTCATA
1 AAAAAAATTCATA
122588154 AAAAAAATT
1 AAAAAAATT
122588163 AGCATGAAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 8 0.28
13 12 0.41
14 9 0.31
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (13 bp):
AAAAAAATTCATA
Found at i:122588858 original size:26 final size:26
Alignment explanation
Indices: 122588829--122588885 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
122588819 AAAAAAATAT
* *
122588829 AAAAT-ATTAAATTTCAATATAACAAC
1 AAAATAATTAAA-TTAAATATAACAAA
*
122588855 AAAATAATTAAATTAAATATAATAAA
1 AAAATAATTAAATTAAATATAACAAA
122588881 AAAAT
1 AAAAT
122588886 TCTTACCATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (26 bp):
AAAATAATTAAATTAAATATAACAAA
Found at i:122593008 original size:33 final size:34
Alignment explanation
Indices: 122592946--122593011 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
122592936 GATCAAACAT
122592946 AACCCAGATGGCTCTGTTGAAAGGTATAAAGTCC
1 AACCCAGATGGCTCTGTTGAAAGGTATAAAGTCC
122592980 AACCCAGATGGCTCTGTTG-AAGGTATAAAGTC
1 AACCCAGATGGCTCTGTTGAAAGGTATAAAGTC
122593012 TATCTTGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 13 0.41
34 19 0.59
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (34 bp):
AACCCAGATGGCTCTGTTGAAAGGTATAAAGTCC
Found at i:122596283 original size:46 final size:46
Alignment explanation
Indices: 122596216--122596483 Score: 300
Period size: 46 Copynumber: 5.8 Consensus size: 46
122596206 TGTAACCCGC
*
122596216 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
122596262 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
122596312 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
122596355 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
122596405 -C-TCA-CGAACTCGGACTCAGCTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
122596448 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
122596484 ATGCTCAACC
Statistics
Matches: 186, Mismatches: 18, Indels: 36
0.77 0.08 0.15
Matches are distributed among these distances:
42 4 0.02
43 6 0.03
44 4 0.02
45 6 0.03
46 90 0.48
47 55 0.30
48 6 0.03
49 4 0.02
50 6 0.03
51 5 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:122596336 original size:93 final size:93
Alignment explanation
Indices: 122596224--122596487 Score: 501
Period size: 93 Copynumber: 2.8 Consensus size: 93
122596214 GCCCATAAGT
* *
122596224 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
122596289 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
122596317 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
122596382 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
122596410 GAACTCGGACTCAGCTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
122596475 CGAGTTCGGATGC
66 CGAGTTCGGATGC
122596488 TCAACCATCC
Statistics
Matches: 168, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 168 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:122600647 original size:29 final size:31
Alignment explanation
Indices: 122600602--122600666 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 31
122600592 TGGCCCAAGA
*
122600602 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATACTCAAAATTTGAAGGACTAATAGT
*
122600632 GTAAATA-TGAAAATTTGAAGGACTAATAGT
1 GTAAATACTCAAAATTTGAAGGACTAATAGT
122600662 GTAAA
1 GTAAA
122600667 CATTTTAAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 17 0.53
30 15 0.47
ACGTcount: A:0.48, C:0.05, G:0.18, T:0.29
Consensus pattern (31 bp):
GTAAATACTCAAAATTTGAAGGACTAATAGT
Found at i:122600943 original size:2 final size:2
Alignment explanation
Indices: 122600936--122600976 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
122600926 ATTTTATTTA
122600936 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
122600977 AAAGGAAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:122602861 original size:46 final size:46
Alignment explanation
Indices: 122602809--122603127 Score: 462
Period size: 46 Copynumber: 7.0 Consensus size: 46
122602799 AGTGTGCTCT
*
122602809 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
122602855 CTGATATGAAATGTGTAAGACCATGGTTGAAA-ATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
122602900 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
122602946 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
122602992 ATGACAGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
122603038 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
122603084 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
122603128 TCATGTCAAA
Statistics
Matches: 254, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
45 46 0.18
46 208 0.82
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:122603434 original size:16 final size:17
Alignment explanation
Indices: 122603413--122603445 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
122603403 ATGATGGAGC
122603413 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
122603429 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
122603446 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:122604748 original size:16 final size:17
Alignment explanation
Indices: 122604717--122604749 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
122604707 TTCATAAGTA
122604717 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
122604734 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
122604750 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:122605174 original size:91 final size:92
Alignment explanation
Indices: 122605030--122605253 Score: 306
Period size: 91 Copynumber: 2.4 Consensus size: 92
122605020 TTATCATTGA
* * * * * * *
122605030 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTT
* ** * *
122605095 TCAACCGTGGTCTTATTCA-TTCCCGT
66 TCAACCATGGTCTTACACATTTCACAT
**
122605121 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTT
*
122605186 TCAACCATGGTCTTACACATTTCATAT
66 TCAACCATGGTCTTACACATTTCACAT
122605213 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
122605254 CATTTTAGAA
Statistics
Matches: 117, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
91 72 0.62
92 45 0.38
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (92 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCACAT
Done.