Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 406 of 425
Found at i:123907651 original size:2 final size:2
Alignment explanation
Indices: 123907644--123907682 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
123907634 ACTTACTTGG
123907644 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
123907683 TAGACCTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:123917088 original size:16 final size:16
Alignment explanation
Indices: 123917068--123917101 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
123917058 TGATTTCAAA
*
123917068 ATTTTT-AAATTTTTT
1 ATTTTTAAAATTATTT
123917083 ATTTTTAAAATTATTT
1 ATTTTTAAAATTATTT
123917099 ATT
1 ATT
123917102 GATGTGAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTTTAAAATTATTT
Found at i:123928601 original size:3 final size:3
Alignment explanation
Indices: 123928595--123928624 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
123928585 GCTTTTGCTG
123928595 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
123928625 GATAATTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:123929015 original size:3 final size:3
Alignment explanation
Indices: 123929007--123929048 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
123928997 AAAGCCTCAA
123929007 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA- AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
123929049 GAGGAGGTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:123930795 original size:41 final size:41
Alignment explanation
Indices: 123930592--123930797 Score: 249
Period size: 41 Copynumber: 5.0 Consensus size: 41
123930582 TTGTAAAACA
* * *
123930592 CAGAGCAATAGCGGCG-TTTTACTAAAAACGCCACTAAAA-A
1 CAGAGCAATAGCGGCGCTTTTAGT-AAAACGCCGCTAAAAGT
**
123930632 CAGAGCAATAGCGGCG-TTTTAGTAAAAAACGCCGC-AAAAAA
1 CAGAGCAATAGCGGCGCTTTTAGT--AAAACGCCGCTAAAAGT
*
123930673 CAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGCTTTTAGTAAAACGCCGCTAAAAGT
* * *
123930714 CGGAGCAATAGTGGCGCTTTTTGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGCTTTTAGTAAAACGCCGCTAAAAGT
* * *
123930755 CGGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCGGCGCTTTTAGTAAAACGCCGCTAAAAGT
123930796 CA
1 CA
123930798 TATAACCCCT
Statistics
Matches: 151, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
40 36 0.24
41 109 0.72
42 6 0.04
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (41 bp):
CAGAGCAATAGCGGCGCTTTTAGTAAAACGCCGCTAAAAGT
Found at i:123931066 original size:15 final size:15
Alignment explanation
Indices: 123931027--123931077 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
123931017 CGGTTTAATA
*
123931027 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* * *
123931041 TCTATGATTTAGGGT
1 TTTATGGTTTAAGGT
123931056 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
123931071 TTAATGG
1 TTTATGG
123931078 CCATGGGTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 10 0.36
15 18 0.64
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:123933049 original size:13 final size:14
Alignment explanation
Indices: 123933033--123933068 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
123933023 CAATCTCATA
123933033 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
123933046 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
123933059 TCTC-ATTTCA
1 TCTCAATTTCA
123933069 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:123933058 original size:18 final size:19
Alignment explanation
Indices: 123933020--123933060 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
123933010 TGGTTCATGT
123933020 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
123933039 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
123933057 TTTC
1 TTTC
123933061 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:123933250 original size:39 final size:38
Alignment explanation
Indices: 123933183--123933317 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
123933173 ACCAATATGG
* * *
123933183 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
123933222 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
123933260 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
123933301 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
123933318 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:123933583 original size:18 final size:19
Alignment explanation
Indices: 123933557--123933595 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
123933547 TTTCAATTCA
123933557 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
123933576 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
123933594 AT
1 AT
123933596 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:123934922 original size:5 final size:5
Alignment explanation
Indices: 123934912--123934964 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
123934902 TTACTTATTT
* *
123934912 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
123934960 ATATA
1 ATATA
123934965 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:123934928 original size:12 final size:12
Alignment explanation
Indices: 123934911--123934966 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
123934901 TTTACTTATT
123934911 TATATAATATAA
1 TATATAATATAA
123934923 TATATAATATAATA
1 TATATAATAT-A-A
123934937 TACTATAATATAA
1 TA-TATAATATAA
*
123934950 TA-ATAATTTAA
1 TATATAATATAA
123934961 TATATA
1 TATATA
123934967 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:123936759 original size:1 final size:1
Alignment explanation
Indices: 123936753--123936780 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
123936743 CATTACTTCA
123936753 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
123936781 GCATCAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:123939504 original size:13 final size:14
Alignment explanation
Indices: 123939488--123939523 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
123939478 CAATCTCATA
123939488 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
123939501 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
123939514 TCTC-ATTTCA
1 TCTCAATTTCA
123939524 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:123939513 original size:18 final size:19
Alignment explanation
Indices: 123939475--123939515 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
123939465 TGGTTCATGT
123939475 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
123939494 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
123939512 TTTC
1 TTTC
123939516 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:123939705 original size:39 final size:38
Alignment explanation
Indices: 123939638--123939772 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
123939628 ACCAATATGG
* * *
123939638 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
123939677 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
123939715 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
123939756 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
123939773 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:123940037 original size:18 final size:19
Alignment explanation
Indices: 123940011--123940049 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
123940001 TTTCAATTCA
123940011 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
123940030 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
123940048 AT
1 AT
123940050 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:123941383 original size:5 final size:5
Alignment explanation
Indices: 123941373--123941429 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
123941363 TTACTTATTT
* *
123941373 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
123941421 ATAT- ATATA
1 ATATA ATATA
123941430 TTTTAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 7 0.16
7 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:123941389 original size:12 final size:12
Alignment explanation
Indices: 123941372--123941427 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
123941362 TTTACTTATT
123941372 TATATAATATAA
1 TATATAATATAA
123941384 TATATAATATAATA
1 TATATAATAT-A-A
123941398 TACTATAATATAA
1 TA-TATAATATAA
*
123941411 TA-ATAATTTAA
1 TATATAATATAA
123941422 TATATA
1 TATATA
123941428 TATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:123941442 original size:26 final size:26
Alignment explanation
Indices: 123941374--123941429 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
123941364 TACTTATTTA
*
123941374 TATAATATAATATATAATATAATATAC
1 TATAATATAACA-ATAATATAATATAC
* *
123941401 TATAATATAATAATAATTTAATATA-
1 TATAATATAACAATAATATAATATAC
123941426 TATA
1 TATA
123941430 TTTTAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATAATATAACAATAATATAATATAC
Found at i:123946087 original size:18 final size:19
Alignment explanation
Indices: 123946051--123946088 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
123946041 GCTAAGTTGT
123946051 AAAATGAGTTGTAAATATG
1 AAAATGAGTTGTAAATATG
123946070 AAAAT-AGTTG-AAATTATG
1 AAAATGAGTTGTAAA-TATG
123946088 A
1 A
123946089 GTTGCTATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.17
18 10 0.56
19 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (19 bp):
AAAATGAGTTGTAAATATG
Found at i:123947974 original size:43 final size:43
Alignment explanation
Indices: 123947926--123948155 Score: 370
Period size: 43 Copynumber: 5.3 Consensus size: 43
123947916 TTTGATGTAA
*
123947926 TGGCACTAAGTGTGCGATATAATTATAGCTTCGGCTAATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
* *
123947969 TGGCACTAAGTGTGCGATATAATTATAGCTTTGGCTAATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
*
123948012 TGGCACTAAGTGTGCAATACAATTATAGCTTCGGCTAATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
*
123948055 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGTTAATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
* * * *
123948098 TGGCACTAAGTGTGCGAAACCATTATAACTTCGGTTAATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
*
123948141 TAGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
123948156 AAGTTTGTTG
Statistics
Matches: 177, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 177 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (43 bp):
TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTAAT
Found at i:123948387 original size:45 final size:45
Alignment explanation
Indices: 123948323--123948436 Score: 148
Period size: 45 Copynumber: 2.6 Consensus size: 45
123948313 GGGGAAATAT
*
123948323 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATG-TCGGTGAGAT-A
1 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCT-GGTGAAATGA
123948367 CTATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGA
1 -TATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGA
*
123948413 TA-TCGGGC-CTCGAGCCTAGCAGGC
1 TATTCGGGCTTTCGAGCCTAGCAGGC
123948437 GAAATACCAG
Statistics
Matches: 64, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
43 15 0.23
44 10 0.16
45 37 0.58
46 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (45 bp):
TATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGA
Found at i:123949682 original size:15 final size:16
Alignment explanation
Indices: 123949664--123949712 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
123949654 TAGGGTTTTT
123949664 AAATAAATAA-TACAA
1 AAATAAATAATTACAA
*
123949679 AAAT-AATAATTACGA
1 AAATAAATAATTACAA
123949694 AAATAAGATACATTACAA
1 AAATAA-ATA-ATTACAA
123949712 A
1 A
123949713 TTATTTACGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
14 5 0.18
15 12 0.43
16 1 0.04
17 3 0.11
18 7 0.25
ACGTcount: A:0.65, C:0.08, G:0.04, T:0.22
Consensus pattern (16 bp):
AAATAAATAATTACAA
Found at i:123958667 original size:14 final size:14
Alignment explanation
Indices: 123958639--123958672 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
123958629 AAAAAATAAC
123958639 ATATATTTATTAAA
1 ATATATTTATTAAA
123958653 ATAT-TTTATTAAAA
1 ATATATTTATT-AAA
123958667 ATATAT
1 ATATAT
123958673 GAAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.33
14 11 0.61
15 1 0.06
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATATTTATTAAA
Found at i:123959731 original size:12 final size:12
Alignment explanation
Indices: 123959704--123959738 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
123959694 TCTCCAAACT
123959704 ACAAAAA-AAAA
1 ACAAAAACAAAA
123959715 A-AAAAACAAAA
1 ACAAAAACAAAA
123959726 ACAAAAACAAAA
1 ACAAAAACAAAA
123959738 A
1 A
123959739 ATCTGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.23
11 6 0.27
12 11 0.50
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (12 bp):
ACAAAAACAAAA
Found at i:123962736 original size:31 final size:32
Alignment explanation
Indices: 123962683--123962750 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 32
123962673 TTTTGAGGTG
* * *
123962683 TATTTTTATTTTTATCATGTTTTAATTGTTTT
1 TATTTTTATTGTTATCACGTTTTAATTATTTT
123962715 TATTTTTA-TGTTATCACGTTTTAATTATTTT
1 TATTTTTATTGTTATCACGTTTTAATTATTTT
123962746 TATTT
1 TATTT
123962751 ATTCTATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 25 0.76
32 8 0.24
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.69
Consensus pattern (32 bp):
TATTTTTATTGTTATCACGTTTTAATTATTTT
Found at i:123982522 original size:15 final size:16
Alignment explanation
Indices: 123982493--123982528 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
123982483 TTTCATTCCA
*
123982493 ATTTTATAATAAAAAT
1 ATTTAATAATAAAAAT
123982509 ATTTAATAATAAAAAT
1 ATTTAATAATAAAAAT
123982525 ATTT
1 ATTT
123982529 TTTTATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTAATAATAAAAAT
Found at i:123986284 original size:2 final size:2
Alignment explanation
Indices: 123986273--123986313 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
123986263 CCATACAACT
123986273 GA GA -A GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
123986314 ACTCAAGTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:124001608 original size:19 final size:17
Alignment explanation
Indices: 124001570--124001609 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
124001560 AGCTCCGAAG
*
124001570 AAGAAGAGAAGAAGATA
1 AAGAAGAGAAGAAGAGA
124001587 AAGAAGAGAGAGAGAGAGA
1 AAGAAGAGA-AGA-AGAGA
124001606 AAGA
1 AAGA
124001610 GTCTCGCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 3 0.15
19 8 0.40
ACGTcount: A:0.62, C:0.00, G:0.35, T:0.03
Consensus pattern (17 bp):
AAGAAGAGAAGAAGAGA
Found at i:124002858 original size:25 final size:25
Alignment explanation
Indices: 124002830--124002881 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
124002820 CTATTAATAT
124002830 TTATATTAATATCAAA-TAAATAAAA
1 TTATATTAATATCAAATTAAA-AAAA
* *
124002855 TTATATTCATATTAAATTAAAAAAA
1 TTATATTAATATCAAATTAAAAAAA
124002880 TT
1 TT
124002882 CCCTCCATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (25 bp):
TTATATTAATATCAAATTAAAAAAA
Found at i:124003956 original size:8 final size:8
Alignment explanation
Indices: 124003943--124003982 Score: 64
Period size: 8 Copynumber: 5.1 Consensus size: 8
124003933 AGTTGTTCCC
124003943 TTTTTCTT
1 TTTTTCTT
124003951 TTTTTCTT
1 TTTTTCTT
124003959 TTTTTC-T
1 TTTTTCTT
124003966 TTTTTCTT
1 TTTTTCTT
*
124003974 TCTTTCTT
1 TTTTTCTT
124003982 T
1 T
124003983 CTTCATTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 7 0.23
8 23 0.77
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:124003968 original size:15 final size:15
Alignment explanation
Indices: 124003943--124003982 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
124003933 AGTTGTTCCC
124003943 TTTTTCTTTTTTTCTT
1 TTTTTC-TTTTTTCTT
124003959 TTTTTCTTTTTTCTT
1 TTTTTCTTTTTTCTT
*
124003974 TCTTTCTTT
1 TTTTTCTTT
124003983 CTTCATTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTCTTTTTTCTT
Found at i:124003977 original size:4 final size:4
Alignment explanation
Indices: 124003945--124003985 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
124003935 TTGTTCCCTT
* *
124003945 TTTC TTTT TTTC TTTT TTTC TTT- TTTC TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
124003986 CATTCATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (4 bp):
TTTC
Found at i:124004131 original size:13 final size:13
Alignment explanation
Indices: 124004113--124004145 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
124004103 TAGTATATTG
*
124004113 TTTGTTTGAATTA
1 TTTGTTTCAATTA
124004126 TTTG-TTCAATTA
1 TTTGTTTCAATTA
124004138 TTTGTTTC
1 TTTGTTTC
124004146 TATTTTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.18, C:0.06, G:0.12, T:0.64
Consensus pattern (13 bp):
TTTGTTTCAATTA
Found at i:124005983 original size:24 final size:24
Alignment explanation
Indices: 124005951--124005999 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
124005941 CAAATTCAAA
124005951 TGACACAAGAGGATAGATGATTAC
1 TGACACAAGAGGATAGATGATTAC
124005975 TGACACAAGAGGATAGATGATTAC
1 TGACACAAGAGGATAGATGATTAC
124005999 T
1 T
124006000 TCTATTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.22
Consensus pattern (24 bp):
TGACACAAGAGGATAGATGATTAC
Found at i:124006774 original size:43 final size:43
Alignment explanation
Indices: 124006726--124006838 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
124006716 TGACAATTTT
* * *
124006726 AATATTTCGTAATATGGTAAGCAAATAGCATACGAATAAAACA
1 AATATTTCGTAACATGGTAAACAAATAGCATACAAATAAAACA
** **
124006769 AATATTTTTTAACATGGTAAACAAATATTATACAAATAAAACA
1 AATATTTCGTAACATGGTAAACAAATAGCATACAAATAAAACA
* *
124006812 AATA-TTCTTTAACACGGTAAACAAATA
1 AATATTTC-GTAACATGGTAAACAAATA
124006839 TTATATCAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 2 0.03
43 58 0.97
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (43 bp):
AATATTTCGTAACATGGTAAACAAATAGCATACAAATAAAACA
Found at i:124006793 original size:23 final size:23
Alignment explanation
Indices: 124006764--124006842 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 23
124006754 CATACGAATA
*
124006764 AAACAAATATTTTTTAACATGGT
1 AAACAAATATTATTTAACATGGT
** *
124006787 AAACAAATATTATACAA-AT--A
1 AAACAAATATTATTTAACATGGT
* *
124006807 AAACAAATATTCTTTAACACGGT
1 AAACAAATATTATTTAACATGGT
124006830 AAACAAATATTAT
1 AAACAAATATTAT
124006843 ATCAATATTA
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
20 14 0.33
21 1 0.02
22 2 0.05
23 26 0.60
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (23 bp):
AAACAAATATTATTTAACATGGT
Found at i:124006839 original size:43 final size:43
Alignment explanation
Indices: 124006741--124006862 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 43
124006731 TTCGTAATAT
* ** * * *
124006741 GGTAAGCAAATAGCATACGAATAAAACAAATATTTTTTAACAT
1 GGTAAACAAATATTATACAAATAAAACAAATATTCTTTAACAC
124006784 GGTAAACAAATATTATACAAATAAAACAAATATTCTTTAACAC
1 GGTAAACAAATATTATACAAATAAAACAAATATTCTTTAACAC
* *
124006827 GGTAAACAAATATTATATCAATATTATACAAATATT
1 GGTAAACAAATATTATA-CAA-ATAAAACAAATATT
124006863 GAAGCAATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 54 0.78
44 3 0.04
45 12 0.17
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.30
Consensus pattern (43 bp):
GGTAAACAAATATTATACAAATAAAACAAATATTCTTTAACAC
Found at i:124006870 original size:22 final size:22
Alignment explanation
Indices: 124006832--124006873 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
124006822 AACACGGTAA
*
124006832 ACAAATATTATATCAATATTAT
1 ACAAATATTATAGCAATATTAT
124006854 ACAAATATTGA-AGCAATATT
1 ACAAATATT-ATAGCAATATT
124006874 TTATCAGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.36
Consensus pattern (22 bp):
ACAAATATTATAGCAATATTAT
Found at i:124008445 original size:21 final size:21
Alignment explanation
Indices: 124008421--124008502 Score: 83
Period size: 21 Copynumber: 3.8 Consensus size: 21
124008411 GACACATAAA
*
124008421 GTGCCTAAAACGACACGCGAG
1 GTGCCTAAAACGACACACGAG
* * *
124008442 GTGCTTGATACGACACACGAG
1 GTGCCTAAAACGACACACGAG
* * *
124008463 GTGCTTGATACGACACACGAG
1 GTGCCTAAAACGACACACGAG
124008484 GTGCCTGAAATACGACACA
1 GTGCCT-AAA-ACGACACA
124008503 TAAAGTGCTT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
21 43 0.83
22 1 0.02
23 8 0.15
ACGTcount: A:0.32, C:0.26, G:0.27, T:0.16
Consensus pattern (21 bp):
GTGCCTAAAACGACACACGAG
Found at i:124008480 original size:23 final size:21
Alignment explanation
Indices: 124008430--124008502 Score: 110
Period size: 21 Copynumber: 3.4 Consensus size: 21
124008420 AGTGCCTAAA
*
124008430 ACGACACGCGAGGTGCTTGAT
1 ACGACACACGAGGTGCTTGAT
124008451 ACGACACACGAGGTGCTTGAT
1 ACGACACACGAGGTGCTTGAT
*
124008472 ACGACACACGAGGTGCCTGAAAT
1 ACGACACACGAGGTGCTTG--AT
124008495 ACGACACA
1 ACGACACA
124008503 TAAAGTGCTT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
21 38 0.79
23 10 0.21
ACGTcount: A:0.32, C:0.26, G:0.27, T:0.15
Consensus pattern (21 bp):
ACGACACACGAGGTGCTTGAT
Found at i:124008511 original size:44 final size:42
Alignment explanation
Indices: 124008411--124008515 Score: 120
Period size: 42 Copynumber: 2.5 Consensus size: 42
124008401 ATCAATATAA
* * * * *
124008411 GACACATAAAGTGCCTAAAACGACACGCGAGGTGCTTGATAC
1 GACACATAAAGTGCTTGATACGACACACGAGGTGCCTGATAC
** *
124008453 GACACACGAGGTGCTTGATACGACACACGAGGTGCCTGAAATAC
1 GACACATAAAGTGCTTGATACGACACACGAGGTGCCTG--ATAC
124008497 GACACATAAAGTGCTTGAT
1 GACACATAAAGTGCTTGAT
124008516 CAATAAAGCC
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
42 30 0.60
44 20 0.40
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (42 bp):
GACACATAAAGTGCTTGATACGACACACGAGGTGCCTGATAC
Found at i:124008913 original size:15 final size:15
Alignment explanation
Indices: 124008887--124008943 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
124008877 CATATATATT
124008887 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
124008901 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
124008916 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
124008931 ATATAAATTCAAT
1 ATATAATTTCAAT
124008944 AAATTCATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:124009274 original size:5 final size:5
Alignment explanation
Indices: 124009266--124009295 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
124009256 TCTTTAGTTT
124009266 ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA
124009296 CTAAACATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:124010445 original size:42 final size:41
Alignment explanation
Indices: 124010382--124010492 Score: 136
Period size: 42 Copynumber: 2.7 Consensus size: 41
124010372 CTTCGTTTTC
* *
124010382 TCGATGCCATAGTTCAACTATGGTCTTACACAT-CTTCACATAA
1 TCGATGCCATAG-CCAGCTATGGTCTTACACATAC-TCACAT-A
*
124010425 T-GATGCCATAGCCCAGCTATGGTCTTACACATACTCATATA
1 TCGATGCCATAG-CCAGCTATGGTCTTACACATACTCACATA
*
124010466 TCGATGCCATAGCTAGCTATGGTCTTA
1 TCGATGCCATAGCCAGCTATGGTCTTA
124010493 TACGAATCAC
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
41 16 0.26
42 43 0.70
43 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (41 bp):
TCGATGCCATAGCCAGCTATGGTCTTACACATACTCACATA
Found at i:124010506 original size:42 final size:41
Alignment explanation
Indices: 124010382--124010506 Score: 121
Period size: 42 Copynumber: 3.0 Consensus size: 41
124010372 CTTCGTTTTC
* * *
124010382 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATA-A
1 TCGATGCCATAGCT-AGCTATGGTCTTACACA--ATCACATATA
* *
124010425 T-GATGCCATAGCCCAGCTATGGTCTTACAC-ATACTCATATA
1 TCGATGCCATAG-CTAGCTATGGTCTTACACAAT-CACATATA
*
124010466 TCGATGCCATAGCTAGCTATGGTCTTATACGAATCACATAT
1 TCGATGCCATAGCTAGCTATGGTCTTACAC-AATCACATAT
124010507 CTCACTAATG
Statistics
Matches: 68, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
39 1 0.01
40 5 0.07
41 18 0.26
42 41 0.60
43 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (41 bp):
TCGATGCCATAGCTAGCTATGGTCTTACACAATCACATATA
Found at i:124010572 original size:47 final size:46
Alignment explanation
Indices: 124010483--124010589 Score: 142
Period size: 47 Copynumber: 2.3 Consensus size: 46
124010473 CATAGCTAGC
* * * *
124010483 TATGGTCTTATACGAATCACATATCTCACTAATGTCATATCCCAGA
1 TATGGTCTTATACGAAGCACATATCACACCAATGCCATATCCCAGA
* * *
124010529 TATGGTCTTATACAGTAGCATATATCACACCGATGCCATATCCCAGA
1 TATGGTCTTATAC-GAAGCACATATCACACCAATGCCATATCCCAGA
124010576 TATGGTCTTATACG
1 TATGGTCTTATACG
124010590 GAAATCACTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
46 14 0.26
47 39 0.74
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (46 bp):
TATGGTCTTATACGAAGCACATATCACACCAATGCCATATCCCAGA
Found at i:124010650 original size:31 final size:31
Alignment explanation
Indices: 124010615--124010762 Score: 183
Period size: 31 Copynumber: 4.8 Consensus size: 31
124010605 TTGTCACTTG
*
124010615 TAGCCGAAGCTACCACTATTCACTGATCAGA
1 TAGCCGAAGCTACCACTTTTCACTGATCAGA
*
124010646 TAGCCGAAGCTACCATTTTTCACTGATCA-A
1 TAGCCGAAGCTACCACTTTTCACTGATCAGA
* * * *
124010676 GTAGCCGGAGCTACCACTTTTCGCTGATTAGG
1 -TAGCCGAAGCTACCACTTTTCACTGATCAGA
* *
124010708 TAGCTGGAA-CTACCACTTTTCACTGATCAGG
1 TAGC-CGAAGCTACCACTTTTCACTGATCAGA
*
124010739 TAGCAGAAGCTACCACTTTTCACT
1 TAGCCGAAGCTACCACTTTTCACT
124010763 TGTCATTTGT
Statistics
Matches: 101, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
30 4 0.04
31 95 0.94
32 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
TAGCCGAAGCTACCACTTTTCACTGATCAGA
Found at i:124010844 original size:50 final size:51
Alignment explanation
Indices: 124010738--124010866 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
124010728 CACTGATCAG
* * * *
124010738 GTAGCAGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
124010789 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
*
124010839 GTAGCCGAAGCTATCACTTAACACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
124010867 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:124016890 original size:16 final size:16
Alignment explanation
Indices: 124016854--124016890 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
124016844 AACTTGTAAC
*
124016854 TAAACATTGCTGTAGT
1 TAAATATTGCTGTAGT
*
124016870 TAAATATTGCTTTAGT
1 TAAATATTGCTGTAGT
124016886 TAAAT
1 TAAAT
124016891 GTGTTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (16 bp):
TAAATATTGCTGTAGT
Found at i:124019330 original size:93 final size:93
Alignment explanation
Indices: 124019218--124019389 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
124019208 CGCCCATAAG
* *
124019218 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
124019283 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
124019311 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
124019376 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
124019390 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:124019386 original size:46 final size:46
Alignment explanation
Indices: 124019211--124019386 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
124019201 TGTAACCCGC
* * *
124019211 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
124019257 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
124019307 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
124019350 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
124019387 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:124026871 original size:93 final size:90
Alignment explanation
Indices: 124026759--124026927 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 90
124026749 CGCCCATAAG
* *
124026759 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC--AA-TGAACTCAGACTCAACTCA
124026824 ACGAGCTCGGATGCCTAGTTACATTTCA
63 ACGAGCTCGGATGCCTAGTTACATTTCA
* *
124026852 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAATGAACTCGGACTCAACTCAACG
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAATGAACTCAGACTCAACTCAACG
*
124026917 AGTTCGGATGC
66 AGCTCGGATGC
124026928 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
90 31 0.44
91 2 0.03
93 38 0.54
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (90 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAATGAACTCAGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATTTCA
Found at i:124026880 original size:20 final size:20
Alignment explanation
Indices: 124026857--124026924 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 20
124026847 TTTCACGAAC
124026857 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
* * **
124026877 TCGGACATTC-GCATCCAATGAAC
1 TCGGAC--TCAAC-T-CAACGAGT
124026900 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
124026920 TCGGA
1 TCGGA
124026925 TGCTCAACCA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
20 16 0.46
21 4 0.11
22 4 0.11
23 11 0.31
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (20 bp):
TCGGACTCAACTCAACGAGT
Found at i:124026914 original size:43 final size:43
Alignment explanation
Indices: 124026760--124026924 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 43
124026750 GCCCATAAGC
* *
124026760 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC--AA-T
* * * *
124026806 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATTTC-AC
1 GAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCA-TCCAAT
*
124026853 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAAT
*
124026896 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
124026925 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 11, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
42 4 0.04
43 33 0.33
44 1 0.01
46 27 0.27
47 27 0.27
48 1 0.01
49 1 0.01
50 2 0.02
51 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (43 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAAT
Found at i:124031087 original size:3 final size:3
Alignment explanation
Indices: 124031079--124031172 Score: 188
Period size: 3 Copynumber: 31.3 Consensus size: 3
124031069 TCCCACCATA
124031079 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
124031127 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
124031173 TGTTAAAATA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 91 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:124040354 original size:31 final size:31
Alignment explanation
Indices: 124040292--124040355 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
124040282 AAAAACCAAC
* * * * **
124040292 AAATTGACTCTTTTTTAAAGGTAGATGGTCA
1 AAATAGACTCTTTTTAAAAGATAAAAAGTCA
124040323 AAATAGACTCTTTTTAAAAGATAAAAAGTCA
1 AAATAGACTCTTTTTAAAAGATAAAAAGTCA
124040354 AA
1 AA
124040356 TTTAGCTTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (31 bp):
AAATAGACTCTTTTTAAAAGATAAAAAGTCA
Found at i:124044980 original size:23 final size:22
Alignment explanation
Indices: 124044942--124044992 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
124044932 GTTCAAGTAA
*
124044942 TTAATTTATTAAATTGAATTAT
1 TTAATTAATTAAATTGAATTAT
*
124044964 TTAATTAATTTAAATTGAGTTAT
1 TTAATTAA-TTAAATTGAATTAT
*
124044987 TCAATT
1 TTAATT
124044993 CAGTAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (22 bp):
TTAATTAATTAAATTGAATTAT
Found at i:124048565 original size:2 final size:2
Alignment explanation
Indices: 124048560--124048587 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
124048550 TTAAAAAAAA
124048560 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124048588 CTTTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124050131 original size:16 final size:17
Alignment explanation
Indices: 124050112--124050143 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
124050102 AAAGTCTTAC
124050112 AAAAAAAAAGA-AAAGA
1 AAAAAAAAAGAGAAAGA
124050128 AAAAAAAAAGAGAAAG
1 AAAAAAAAAGAGAAAG
124050144 TGTTTGCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAGAAAGA
Found at i:124053798 original size:2 final size:2
Alignment explanation
Indices: 124053791--124053815 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
124053781 ACAAAAACTT
124053791 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
124053816 TCCTATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:124055371 original size:30 final size:30
Alignment explanation
Indices: 124055337--124055398 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
124055327 TTCGAGCTTC
*
124055337 TTCCAACCGCCCTGCTTTTCTCGGTAAGTT
1 TTCCAACAGCCCTGCTTTTCTCGGTAAGTT
* *
124055367 TTCCAACAGCTCTGCTTTTCTCGTTAAGTT
1 TTCCAACAGCCCTGCTTTTCTCGGTAAGTT
124055397 TT
1 TT
124055399 TCCCTTCGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.42
Consensus pattern (30 bp):
TTCCAACAGCCCTGCTTTTCTCGGTAAGTT
Found at i:124057768 original size:32 final size:32
Alignment explanation
Indices: 124057709--124057783 Score: 82
Period size: 32 Copynumber: 2.3 Consensus size: 32
124057699 TGTACTTTAT
124057709 TTTATTTTTTATATATTCTTTAAAAATTTGAG
1 TTTATTTTTTATATATTCTTTAAAAATTTGAG
* * *
124057741 TTTATTTATTTGA-ATATT-TTTATAAATTTTAA
1 TTTATTT-TTT-ATATATTCTTTAAAAATTTGAG
*
124057773 ATTATTTTTTA
1 TTTATTTTTTA
124057784 ATGTGGTGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
30 1 0.03
31 3 0.08
32 24 0.65
33 8 0.22
34 1 0.03
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (32 bp):
TTTATTTTTTATATATTCTTTAAAAATTTGAG
Found at i:124059566 original size:15 final size:15
Alignment explanation
Indices: 124059521--124059567 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
124059511 CTCATGTTTC
124059521 ATTTTAATTATTTAT
1 ATTTTAATTATTTAT
*
124059536 ATTTGAA--ATGTTAT
1 ATTTTAATTAT-TTAT
124059550 ATTTTAATTATTTAT
1 ATTTTAATTATTTAT
124059565 ATT
1 ATT
124059568 ATTATTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
13 2 0.07
14 10 0.37
15 13 0.48
16 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (15 bp):
ATTTTAATTATTTAT
Found at i:124060343 original size:17 final size:18
Alignment explanation
Indices: 124060308--124060346 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
124060298 AAACATAAAC
124060308 TTAAAATTTTATAAATAT
1 TTAAAATTTTATAAATAT
*
124060326 TTAAAATTTTA-CAATAT
1 TTAAAATTTTATAAATAT
124060343 TTAA
1 TTAA
124060347 TATAACTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAAATTTTATAAATAT
Found at i:124061901 original size:41 final size:42
Alignment explanation
Indices: 124061837--124061922 Score: 156
Period size: 41 Copynumber: 2.1 Consensus size: 42
124061827 TTTAAAGTTA
*
124061837 AGTGACTTAAATCGTAAATCTATTAATAGTTTAGTGATCTTT
1 AGTGACTTAAATCGTAAACCTATTAATAGTTTAGTGATCTTT
124061879 AGTGACTT-AATCGTAAACCTATTAATAGTTTAGTGATCTTT
1 AGTGACTTAAATCGTAAACCTATTAATAGTTTAGTGATCTTT
124061920 AGT
1 AGT
124061923 TAGTTTAACC
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 35 0.81
42 8 0.19
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (42 bp):
AGTGACTTAAATCGTAAACCTATTAATAGTTTAGTGATCTTT
Found at i:124070485 original size:90 final size:90
Alignment explanation
Indices: 124070016--124070473 Score: 772
Period size: 90 Copynumber: 5.1 Consensus size: 90
124070006 AATGTTTGAA
* *
124070016 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCTGATTGGACTTCCTT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
124070081 TTTAGAACGAAACAAGGAATGGAAT
66 TTTAGAACGAAACAAGGAATGGAAT
* *
124070106 CGTCGCCGTCTTCTTCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGACTGGACATCCTT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
124070171 TTTAGAACGAAACAAGGAATGGAAT
66 TTTAGAACGAAACAAGGAATGGAAT
* * *
124070196 CGTCGTCGTCTTCTTCAAGACGAAGATAGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
124070261 TTTAGAACGAAACAAGGAATGGAAT
66 TTTAGAACGAAACAAGGAATGGAAT
* *
124070286 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTGTCGGCCATTCCGATTGGACATCCTT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
*
124070351 TTTAGAACGAAACAAAGAATGGAAT
66 TTTAGAACGAAACAAGGAATGGAAT
* * *
124070376 CGTCGTCGTCTTCTCCAAGACGAAGATAGACTTCCGGTTATTGGCCATTCCGATTGGACATCATT
1 CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
* *
124070441 TTTAGAACGGAACAAGGAATGGAAC
66 TTTAGAACGAAACAAGGAATGGAAT
*
124070466 CGCCGCCG
1 CGTCGCCG
124070474 GATGCTCCAA
Statistics
Matches: 345, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 345 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (90 bp):
CGTCGCCGTCTTCTCCAAGACGAAGATGGACTTCCGGTTATTGGCCATTCCGATTGGACATCCTT
TTTAGAACGAAACAAGGAATGGAAT
Found at i:124071706 original size:51 final size:51
Alignment explanation
Indices: 124071646--124072046 Score: 516
Period size: 51 Copynumber: 7.9 Consensus size: 51
124071636 AAAACTGAAG
* * * * *
124071646 ACAAAGGGTTGATCCCTACGTCCCTAGATGTTCCCGCTAGTAAATCCGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
*
124071697 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCTGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
124071748 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* * *
124071799 ACAGTGGGCTCATCCCTACCTCTCCAGATGTTCCCGCTAGTAAACCCGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* * * *
124071850 ACAGTGAGG-TGATCCCTACCTCCCCAAATGTTCCCGTTAGTAAACCCGAAA
1 ACAATG-GGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* *
124071901 ACAATGGGTTCATCCCTACCTCCCCAGATGTTTCCGTTAGTAAACCCGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* * * * * * *
124071952 ACAGTGGGTTGATCCCTATCTCTCCAGATCTTTCCGCTAGTAAACCTGAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
* ** * * * * *
124072003 ACAATGGGGTGGTCTCTATCTCCCCAAATCTTTCCGCTAGTAAA
1 ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAA
124072047 GCCGCACACA
Statistics
Matches: 317, Mismatches: 31, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
50 2 0.01
51 313 0.99
52 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.24
Consensus pattern (51 bp):
ACAATGGGTTCATCCCTACCTCCCCAGATGTTCCCGCTAGTAAACCCGAAA
Found at i:124072119 original size:21 final size:21
Alignment explanation
Indices: 124072095--124072163 Score: 120
Period size: 21 Copynumber: 3.3 Consensus size: 21
124072085 ACACAAGAAA
124072095 AAGAAGCACCATGGGAAAGGG
1 AAGAAGCACCATGGGAAAGGG
*
124072116 AAGAAGCACCATGGAAAAGGG
1 AAGAAGCACCATGGGAAAGGG
*
124072137 AAGAAGCACCATAGGAAAGGG
1 AAGAAGCACCATGGGAAAGGG
124072158 AAGAAG
1 AAGAAG
124072164 AAAGGGAAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.48, C:0.13, G:0.35, T:0.04
Consensus pattern (21 bp):
AAGAAGCACCATGGGAAAGGG
Found at i:124072628 original size:31 final size:32
Alignment explanation
Indices: 124072574--124072645 Score: 87
Period size: 30 Copynumber: 2.3 Consensus size: 32
124072564 ATTTTAAATC
*
124072574 AATAATAATAAAATTATATTTTAATCATCTTAAA
1 AATAATAA-AAAAATATATTTTAATCAT-TTAAA
*
124072608 AATAATAAAAAAAT-TA-TTTAATTATTTAAA
1 AATAATAAAAAAATATATTTTAATCATTTAAA
124072638 AAT-ATAAA
1 AATAATAAA
124072646 GATATAAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
29 5 0.14
30 8 0.22
31 8 0.22
32 2 0.06
33 5 0.14
34 8 0.22
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (32 bp):
AATAATAAAAAAATATATTTTAATCATTTAAA
Found at i:124079007 original size:21 final size:22
Alignment explanation
Indices: 124078968--124079008 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
124078958 AAAAAAATAT
*
124078968 AAAATTGATTGATGAATTAAAA
1 AAAATTGATTAATGAATTAAAA
*
124078990 AAAATTG-TTAATGGATTAA
1 AAAATTGATTAATGAATTAA
124079009 TTTTCCATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (22 bp):
AAAATTGATTAATGAATTAAAA
Found at i:124088427 original size:14 final size:14
Alignment explanation
Indices: 124088408--124088435 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
124088398 AAAATATGAC
124088408 CAATATGGTCATTA
1 CAATATGGTCATTA
124088422 CAATATGGTCATTA
1 CAATATGGTCATTA
124088436 TTAGTTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
CAATATGGTCATTA
Found at i:124093767 original size:27 final size:28
Alignment explanation
Indices: 124093737--124093805 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
124093727 ATAGTAAGTC
*
124093737 CGCACACTTAGTGCT-TA-ATAGTCAACT
1 CGCACACTTAGTGCTATACA-AGTAAACT
*
124093764 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAAGTAAACT
124093792 CGCACACTTAGTGC
1 CGCACACTTAGTGC
124093806 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAAGTAAACT
Found at i:124099855 original size:83 final size:82
Alignment explanation
Indices: 124099693--124100064 Score: 292
Period size: 82 Copynumber: 4.5 Consensus size: 82
124099683 AAGCTCGAAT
* * * * * *
124099693 TTAGCAAGTAGTACCCATAAAAGGTGTGTGCTCAAATAATTAGCCAAGTGTCTTAAAAGGTTAGC
1 TTAGCAAGCAGTACCC-TCAAAGGTGTGTGCTCAAATAATTGGCTAAGTGTCTTAAGAGGCTAG-
* * *
124099758 AATG-G-TTCTACTATTAAC
64 AA-GCGATTTTGCTATTAGC
* * *
124099776 TTAGGAAGCAGTACCCTCAAAGCGAGTGTGCTCAAATAATTGGTTAAGT-TCCTTAAGAGGCTAG
1 TTAGCAAGCAGTACCCTCAAAG-GTGTGTGCTCAAATAATTGGCTAAGTGT-CTTAAGAGGCTAG
124099840 AAGC-AGTTTTGCTATTAGC
64 AAGCGA-TTTTGCTATTAGC
* * * * * * *
124099859 TTCA-CAAGAAG-ATCTTCAAAGGGTGCGTGCCCAACTAATTGGCTAAGTGTCTTAAGAGGCTCG
1 TT-AGCAAGCAGTACCCTCAAA-GGTGTGTGCTCAAATAATTGGCTAAGTGTCTTAAGAGGCTAG
*
124099922 CAGCGATTTTGCTATTAGC
64 AAGCGATTTTGCTATTAGC
* * * *
124099941 TTAGCAAGCAGTACCCTCAAA-GTGTGTTCTCAAATAATTAGCTAAGTGTCTT-AGAAGACTAGC
1 TTAGCAAGCAGTACCCTCAAAGGTGTGTGCTCAAATAATTGGCTAAGTGTCTTAAG-AGGCTAGA
* * * *
124100004 AGTGATTCTACTATTAAC
65 AGCGATTTTGCTATTAGC
* * * **
124100022 TTTAGCAAGTAGGACGCTCAAACAATGTGTGCTCAAATAATTG
1 -TTAGCAAGCAGTACCCTCAAA-GGTGTGTGCTCAAATAATTG
124100065 TTTCAATGCC
Statistics
Matches: 231, Mismatches: 43, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
80 2 0.01
81 48 0.21
82 90 0.39
83 74 0.32
84 17 0.07
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (82 bp):
TTAGCAAGCAGTACCCTCAAAGGTGTGTGCTCAAATAATTGGCTAAGTGTCTTAAGAGGCTAGAA
GCGATTTTGCTATTAGC
Found at i:124100178 original size:84 final size:84
Alignment explanation
Indices: 124099999--124100153 Score: 213
Period size: 84 Copynumber: 1.8 Consensus size: 84
124099989 TCTTAGAAGA
* * * **
124099999 CTAGCAGTGATTCTACTATTAACTTTAGCAAGTAGGACGCTCAAACAATGTGTGCTCAAATAATT
1 CTAGCAGTGGTTCTACTATTAACTTTAGCAAGTACGACCCTCAAACAATGTGAACTCAAATAATT
*
124100064 GTTTCAATGCCTTCAAAGG
66 GATTCAATGCCTTCAAAGG
* * *
124100083 CTAGCAGTGGTTCTGCTATTAACTTTGGCAAGTACTACCCTCAAAC-ATCGTGAACTCAAATAAT
1 CTAGCAGTGGTTCTACTATTAACTTTAGCAAGTACGACCCTCAAACAAT-GTGAACTCAAATAAT
124100147 TGATTCA
65 TGATTCA
124100154 TTGTCTTGGA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
83 2 0.03
84 59 0.97
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (84 bp):
CTAGCAGTGGTTCTACTATTAACTTTAGCAAGTACGACCCTCAAACAATGTGAACTCAAATAATT
GATTCAATGCCTTCAAAGG
Found at i:124111590 original size:17 final size:18
Alignment explanation
Indices: 124111539--124111587 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 18
124111529 TTTTACTTAT
124111539 TCAATTATAAAAAATTAAAA
1 TCAATTAT--AAAATTAAAA
*
124111559 TCAATTATAAAATTAAAT
1 TCAATTATAAAATTAAAA
124111577 TCAATTATAAA
1 TCAATTATAAA
124111588 TTAGTTTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 20 0.71
20 8 0.29
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (18 bp):
TCAATTATAAAATTAAAA
Found at i:124115053 original size:43 final size:44
Alignment explanation
Indices: 124115005--124115213 Score: 207
Period size: 43 Copynumber: 4.9 Consensus size: 44
124114995 GTTACCGAGA
* *
124115005 TGTGATTACATGTAAGACCAAGTCTGGGACATTGGCATTGTT-T
1 TGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGTTAT
* * * *
124115048 TGTGATTACGTGTAAGACCATGTCTGGGGCATTGACATCATTAT
1 TGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGTTAT
*
124115092 T-CGATTACGTGTAAGACCATA-TCTGGGACATTGGCATCGTTAT
1 TGTGATTACGTGTAAGACCA-AGTCTGGGACATTGGCATCGTTAT
* ** * * *
124115135 T-TGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCGATA-
1 TGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGTTAT
* * *
124115177 TGTGATAACATGTAAGACCATA-TCTGGGATA-TGGCAT
1 TGTGATTACGTGTAAGACCA-AGTCTGGGACATTGGCAT
124115214 TGTACGAGCT
Statistics
Matches: 136, Mismatches: 25, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
42 7 0.05
43 127 0.93
44 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (44 bp):
TGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCATCGTTAT
Found at i:124115191 original size:86 final size:86
Alignment explanation
Indices: 124115004--124115213 Score: 259
Period size: 86 Copynumber: 2.5 Consensus size: 86
124114994 GGTTACCGAG
*
124115004 ATGTGATTACATGTAAGACCA-AGTCTGGGACATTGGCATTGTTTTGTGATTACGTGTAAGACCA
1 ATGTGATTACATGTAAGACCATA-TCTGGGACATTGGCATCGTTTTGTGATTACGTGTAAGACCA
* *
124115068 TGTCTGGGGCATTGACATCATT
65 TGTCTGGGACAGTGACATCATT
* *
124115090 AT-TCGATTACGTGTAAGACCATATCTGGGACATTGGCATCGTTATT-TGATTTCGTGTAAGACC
1 ATGT-GATTACATGTAAGACCATATCTGGGACATTGGCATCGTT-TTGTGATTACGTGTAAGACC
* * *
124115153 CTGTTTGGGACAGTGGCATCGA-T
64 ATGTCTGGGACAGTGACATC-ATT
* *
124115176 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
124115214 TGTACGAGCT
Statistics
Matches: 108, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
85 7 0.06
86 96 0.89
87 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (86 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCGTTTTGTGATTACGTGTAAGACCAT
GTCTGGGACAGTGACATCATT
Found at i:124116634 original size:36 final size:36
Alignment explanation
Indices: 124116560--124116665 Score: 115
Period size: 36 Copynumber: 3.0 Consensus size: 36
124116550 CAATCAGTAA
* * * * *
124116560 TATTCATTAACAATCAGTCAATCAG-AACAATTATT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
* * *
124116595 TATTCAGTAACAGTCAGTTATTCGGTAACAATCAAT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
* *
124116631 TATTCAATAATAATCAGTTATTCAGTATCAATCAA
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAA
124116666 CTGATCGGTT
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
35 20 0.34
36 38 0.66
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (36 bp):
TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
Found at i:124116739 original size:19 final size:19
Alignment explanation
Indices: 124116594--124116741 Score: 81
Period size: 18 Copynumber: 7.7 Consensus size: 19
124116584 GAACAATTAT
* *
124116594 TTATTCAGTAACAGTC-AG
1 TTATTCAGTAACAATCAAA
*
124116612 TTATTCGGTAACAATC-AA
1 TTATTCAGTAACAATCAAA
* * *
124116630 TTATTCAATAATAATC-AG
1 TTATTCAGTAACAATCAAA
*
124116648 TTATTCAGTATCAATCAACTGA
1 TTATTCAGTAACAATCAA---A
* *
124116670 TCGGTTATCCAGTAACAGTC-AA
1 ----TTATTCAGTAACAATCAAA
* *
124116692 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCAAA
* *
124116711 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
124116729 TTATTCAGTAACA
1 TTATTCAGTAACA
124116742 GTCGATCTTT
Statistics
Matches: 97, Mismatches: 23, Indels: 19
0.70 0.17 0.14
Matches are distributed among these distances:
18 69 0.71
19 13 0.13
22 1 0.01
25 1 0.01
26 13 0.13
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.33
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:124116866 original size:6 final size:6
Alignment explanation
Indices: 124116857--124116893 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
124116847 CCGAAGCCGG
124116857 AACAGT AACAGT AACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT AACAGT AACAGT A
124116894 CGGTACACAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:124116998 original size:12 final size:12
Alignment explanation
Indices: 124116981--124117005 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
124116971 AGTGCCGAAT
124116981 CGGTAACAGTAA
1 CGGTAACAGTAA
124116993 CGGTAACAGTAA
1 CGGTAACAGTAA
124117005 C
1 C
124117006 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:124117220 original size:20 final size:20
Alignment explanation
Indices: 124117190--124117227 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
124117180 ATATAATTCC
124117190 ATTCAATTTTCACTAATAAAT
1 ATTCAATTTTCAC-AATAAAT
124117211 ATTCAA-TTTCACAATAA
1 ATTCAATTTTCACAATAA
124117228 TCACAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTCAATTTTCACAATAAAT
Found at i:124118041 original size:19 final size:17
Alignment explanation
Indices: 124118006--124118049 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 17
124117996 AAACCTTCAA
124118006 TTTTCCCTTTCTTCTTT
1 TTTTCCCTTTCTTCTTT
124118023 TTTTCTCCTTTCTTTCTTT
1 TTTTC-CCTTTC-TTCTTT
*
124118042 CTTTCCCT
1 TTTTCCCT
124118050 GCTTTTCGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 5 0.21
18 9 0.38
19 10 0.42
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTCCCTTTCTTCTTT
Found at i:124123085 original size:18 final size:18
Alignment explanation
Indices: 124123064--124123099 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
124123054 ATTTATTTCT
124123064 AAAAAT-ATGTTAAAAATA
1 AAAAATAAT-TTAAAAATA
124123082 AAAAATAATTTAAAAATA
1 AAAAATAATTTAAAAATA
124123100 GCTCGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.88
19 2 0.12
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (18 bp):
AAAAATAATTTAAAAATA
Found at i:124125520 original size:23 final size:22
Alignment explanation
Indices: 124125481--124125545 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 22
124125471 ATTTGAGTTT
*
124125481 TTAAA-TTTAAAAAATAAATAGA
1 TTAAATTTTAAAAAATAAA-AAA
*
124125503 TTAAATTTTTAAAAATAAAAAA
1 TTAAATTTTAAAAAATAAAAAA
*
124125525 TTAAATTTTAAATATATAAAA
1 TTAAATTTTAAA-AAATAAAA
124125546 GGGTATTATG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 18 0.49
23 19 0.51
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAATTTTAAAAAATAAAAAA
Found at i:124125533 original size:22 final size:23
Alignment explanation
Indices: 124125481--124125536 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
124125471 ATTTGAGTTT
*
124125481 TTAAA-TTTAAAAAATAAATAGA
1 TTAAATTTTAAAAAATAAATAAA
*
124125503 TTAAATTTTTAAAAATAAA-AAA
1 TTAAATTTTAAAAAATAAATAAA
124125525 TTAAATTTTAAA
1 TTAAATTTTAAA
124125537 TATATAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
TTAAATTTTAAAAAATAAATAAA
Found at i:124125545 original size:22 final size:22
Alignment explanation
Indices: 124125481--124125546 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
124125471 ATTTGAGTTT
*
124125481 TTAAA-TTTAAAAAATAAATAGA
1 TTAAATTTTAAAATATAAA-AGA
*
124125503 TTAAATTTTTAAAA-ATAAAAAA
1 TTAAA-TTTTAAAATATAAAAGA
124125525 TTAAATTTTAAATATATAAAAG
1 TTAAATTTTAAA-ATATAAAAG
124125547 GGTATTATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
21 7 0.18
22 13 0.34
23 11 0.29
24 7 0.18
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (22 bp):
TTAAATTTTAAAATATAAAAGA
Found at i:124128049 original size:16 final size:18
Alignment explanation
Indices: 124128028--124128063 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
124128018 TTTTATCTAT
124128028 TATAAAT-T-ACATAATA
1 TATAAATATAACATAATA
124128044 TATAAATATAACATAATA
1 TATAAATATAACATAATA
124128062 TA
1 TA
124128064 AGATATTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (18 bp):
TATAAATATAACATAATA
Found at i:124130482 original size:21 final size:21
Alignment explanation
Indices: 124130453--124130501 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
124130443 TTCATCGATT
*
124130453 ACATTAGATATTACGTGATAA
1 ACATCAGATATTACGTGATAA
*
124130474 ACATCAGATATTATGTGATAA
1 ACATCAGATATTACGTGATAA
124130495 ACATCAG
1 ACATCAG
124130502 TTTCCATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (21 bp):
ACATCAGATATTACGTGATAA
Found at i:124131120 original size:30 final size:32
Alignment explanation
Indices: 124131084--124131142 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
124131074 AATTCAATTA
124131084 GAAATTA-TCAATAATTT-AT-TATTTTTTAAT
1 GAAATTAGTC-ATAATTTAATATATTTTTTAAT
*
124131114 GAAATTAGTCATATTTTAATATATTTTTT
1 GAAATTAGTCATAATTTAATATATTTTTT
124131143 TAACATCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 13 0.52
31 4 0.16
32 8 0.32
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.54
Consensus pattern (32 bp):
GAAATTAGTCATAATTTAATATATTTTTTAAT
Found at i:124133420 original size:10 final size:11
Alignment explanation
Indices: 124133401--124133443 Score: 54
Period size: 10 Copynumber: 4.1 Consensus size: 11
124133391 GAGTATTTTA
124133401 TTTTATAATTT
1 TTTTATAATTT
124133412 TTTTA-AATTT
1 TTTTATAATTT
*
124133422 TTTTATTATTT
1 TTTTATAATTT
*
124133433 TTATA-AATTT
1 TTTTATAATTT
124133443 T
1 T
124133444 AAATTATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 15 0.54
11 13 0.46
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:124133426 original size:21 final size:21
Alignment explanation
Indices: 124133401--124133443 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
124133391 GAGTATTTTA
*
124133401 TTTTATAATTTTTTTAAATTT
1 TTTTATAATTTTTATAAATTT
*
124133422 TTTTATTATTTTTATAAATTT
1 TTTTATAATTTTTATAAATTT
124133443 T
1 T
124133444 AAATTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATAATTTTTATAAATTT
Found at i:124133449 original size:20 final size:19
Alignment explanation
Indices: 124133400--124133454 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
124133390 TGAGTATTTT
124133400 ATTTTATAATT-TTTTTAAA
1 ATTTTA-AATTATTTTTAAA
* **
124133419 TTTTTTTATTATTTTTATAA
1 ATTTTAAATTATTTTTA-AA
124133439 ATTTTAAATTATTTTT
1 ATTTTAAATTATTTTT
124133455 TGACGTGACA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
18 3 0.11
19 10 0.36
20 15 0.54
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
ATTTTAAATTATTTTTAAA
Found at i:124133454 original size:21 final size:21
Alignment explanation
Indices: 124133408--124133455 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
124133398 TTATTTTATA
**
124133408 ATTTTTTTAAATTTTTTTATT
1 ATTTTTTTAAATTTTTAAATT
*
124133429 ATTTTTATAAA-TTTTAAATT
1 ATTTTTTTAAATTTTTAAATT
124133449 ATTTTTT
1 ATTTTTT
124133456 GACGTGACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTTTTTAAATTTTTAAATT
Found at i:124136117 original size:18 final size:19
Alignment explanation
Indices: 124136086--124136121 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
124136076 AAATAATAAG
124136086 TTAAGAAAAGATAATATTA
1 TTAAGAAAAGATAATATTA
*
124136105 TTAAGAAGA-ATAATATT
1 TTAAGAAAAGATAATATT
124136122 TAAATTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (19 bp):
TTAAGAAAAGATAATATTA
Found at i:124137628 original size:3 final size:3
Alignment explanation
Indices: 124137620--124137653 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
124137610 TATTCTTTTT
124137620 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC A
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC A
124137654 GCAGTAGCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:124140558 original size:33 final size:32
Alignment explanation
Indices: 124140492--124140559 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 32
124140482 AATTTTCAAT
*
124140492 AAATAAAAAATATATAAAATTATTAAATATTA
1 AAATAAAAAATATAAAAAATTATTAAATATTA
124140524 AAATAAAATAA-ATAAAATAATT-TTAAAATATTA
1 AAATAAAA-AATATAAAA-AATTATT-AAATATTA
124140557 AAA
1 AAA
124140560 ACTAAGATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
32 15 0.47
33 17 0.53
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (32 bp):
AAATAAAAAATATAAAAAATTATTAAATATTA
Found at i:124141228 original size:13 final size:13
Alignment explanation
Indices: 124141210--124141238 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
124141200 ATTTTAATGT
124141210 TTACATTATAGTA
1 TTACATTATAGTA
124141223 TTACATTATAGTA
1 TTACATTATAGTA
124141236 TTA
1 TTA
124141239 TATAAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TTACATTATAGTA
Found at i:124144417 original size:47 final size:47
Alignment explanation
Indices: 124144308--124144418 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
124144298 CCGGGATAAG
*
124144308 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
124144355 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
124144402 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
124144419 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:124151659 original size:47 final size:47
Alignment explanation
Indices: 124151550--124151660 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
124151540 CCGGGATAAG
*
124151550 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
124151597 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
124151644 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
124151661 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:124155236 original size:35 final size:35
Alignment explanation
Indices: 124155210--124155543 Score: 431
Period size: 35 Copynumber: 9.6 Consensus size: 35
124155200 CATGGCAAAG
124155210 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * * *
124155245 TGTGAAATGTAGGTATGGTATTAACCATACCTAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
*
124155280 TGTGAAACGTAGGTATGATATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * *
124155315 TGTGAAACGTAGGTATGGTGTTAACCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
*
124155350 TGTGAAATGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * *
124155385 TGTGAAA-GTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
*
124155419 TGTGAAACGTAGGTATGATATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * * *
124155454 TGTGAAACATAGGTATAGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
** * * *
124155489 TAAG-AACATAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCAT-CCATACCGAGT
*
124155523 TGTGAAATGTAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTAT
124155544 TTCAATAAGG
Statistics
Matches: 256, Mismatches: 40, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
33 1 0.00
34 57 0.22
35 198 0.77
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
Found at i:124155327 original size:70 final size:70
Alignment explanation
Indices: 124155210--124155544 Score: 482
Period size: 70 Copynumber: 4.8 Consensus size: 70
124155200 CATGGCAAAG
* *
124155210 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATA-
124155275 CT-AGT
65 CTGAGT
*
124155280 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTGTTAACCATAC
1 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
*
124155345 CGAGT
66 TGAGT
* *
124155350 TGTGAAATGTAGGTATGGTATCATCCATACCGAGTTGTGAAA-GTAGGTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
124155414 TGAGT
66 TGAGT
* * *
124155419 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACATAGGTATAGTATTATCCATAC
1 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
124155484 TGAGT
66 TGAGT
** * * *
124155489 TAAG-AACATAGGTATGGCATTTC--CCATACCGAGTTGTGAAATGTAGGTATGGTATT
1 TGTGAAACGTAGGTAT-G-ATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATT
124155545 TCAATAAGGA
Statistics
Matches: 241, Mismatches: 20, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
69 106 0.44
70 131 0.54
71 4 0.02
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (70 bp):
TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
TGAGT
Found at i:124155455 original size:104 final size:104
Alignment explanation
Indices: 124155210--124155543 Score: 454
Period size: 104 Copynumber: 3.2 Consensus size: 104
124155200 CATGGCAAAG
*
124155210 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATAC
* * * *
124155275 CTAGTTGTGAAACGTAGGTATGATATCATCCATACCGAGT
66 CGAGTTGTGAAA-GTAGGTATGGTATTAACCATACCGAGT
* * * *
124155315 TGTGAAACGTAGGTATGGTGTTAACCATACCGAGTTGTGAAATGTAGGTATGGTATCATCCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATAC
*
124155380 CGAGTTGTGAAAGTAGGTATGGTATTAACCATACTGAGT
66 CGAGTTGTGAAAGTAGGTATGGTATTAACCATACCGAGT
* ** *
124155419 TGTGAAACGTAGGTATGATATCATCCATACCGAGTTGTGAAACATAGGTATAGTATTATCCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATAC
* ** * **
124155484 TGAGTTAAGAACA-TAGGTATGGCATTTCCCATACCGAGT
66 CGAGTTGTGAA-AGTAGGTATGGTATTAACCATACCGAGT
*
124155523 TGTGAAATGTAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTAT
124155544 TTCAATAAGG
Statistics
Matches: 201, Mismatches: 27, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
104 129 0.64
105 72 0.36
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (104 bp):
TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTATCCATAC
CGAGTTGTGAAAGTAGGTATGGTATTAACCATACCGAGT
Found at i:124155982 original size:24 final size:24
Alignment explanation
Indices: 124155955--124156011 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
124155945 CAGTTCTTTA
*
124155955 TGAGCTGATAACAGTAAACTCTAT
1 TGAGCTGAAAACAGTAAACTCTAT
* **
124155979 TGAGCTGAAAACGGTATGCTCTAT
1 TGAGCTGAAAACAGTAAACTCTAT
*
124156003 TGAGTTGAA
1 TGAGCTGAA
124156012 CAATAAGCTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (24 bp):
TGAGCTGAAAACAGTAAACTCTAT
Found at i:124157131 original size:42 final size:42
Alignment explanation
Indices: 124157068--124157194 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
124157058 CTTCGTTTTC
** * *
124157068 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
124157111 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
124157152 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
124157193 TC
1 TC
124157195 TTACTGATGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:124157221 original size:46 final size:46
Alignment explanation
Indices: 124157153--124157278 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
124157143 ATTCATATAT
* * * * **
124157153 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTTAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * * *
124157199 TGATGCCATATTCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
124157246 CGATGCCATATCCCAGATATGGTCTTATACGAA
1 CGATGCCATATCCCAGATATGGTCTTATACGAA
124157279 AATTACTTGT
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
46 27 0.41
47 39 0.59
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:124157239 original size:88 final size:89
Alignment explanation
Indices: 124157111--124157278 Score: 205
Period size: 88 Copynumber: 1.9 Consensus size: 89
124157101 CTTCACATAA
* * *
124157111 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATAT-CGATGCCATAGCCCAGCTATGG
1 TGATGCCATAGCCCAGATATGGTCTTACACATATGCATATATCCGATGCCATAGCCCAGATATGG
124157175 TCTTACACGAATCACATATCTTAC
66 TCTTACACGAATCACATATCTTAC
** * *
124157199 TGATGCCATATTCCAGATATGGTCTTATACAGTA-GCATATATCACACCGATGCCATATCCCAGA
1 TGATGCCATAGCCCAGATATGGTCTTACACA-TATGCATATAT----CCGATGCCATAGCCCAGA
*
124157263 TATGGTCTTATACGAA
61 TATGGTCTTACACGAA
124157279 AATTACTTGT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
88 34 0.52
89 2 0.03
93 30 0.45
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (89 bp):
TGATGCCATAGCCCAGATATGGTCTTACACATATGCATATATCCGATGCCATAGCCCAGATATGG
TCTTACACGAATCACATATCTTAC
Found at i:124157340 original size:31 final size:31
Alignment explanation
Indices: 124157294--124157439 Score: 204
Period size: 31 Copynumber: 4.7 Consensus size: 31
124157284 CTTGTCACTT
* *
124157294 GTAGCTGAAGCTACCACTATTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
* *
124157325 GTAGTC-GGAGCTACCATTTTTCACTGATCAG
1 GTAG-CAGAAGCTACCACTTTTCACTGATCAG
* *
124157356 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
*
124157387 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCAGAAGCTACCACTTTTCACTGATCAG
*
124157418 GTAGCTGAAGCTACCACTTTTC
1 GTAGCAGAAGCTACCACTTTTC
124157440 TTTTGTCATT
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 1 0.01
31 103 0.98
32 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:124157516 original size:50 final size:50
Alignment explanation
Indices: 124157449--124157594 Score: 256
Period size: 50 Copynumber: 2.9 Consensus size: 50
124157439 CTTTTGTCAT
*
124157449 TTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAC
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAC
* *
124157499 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATTACTTATCACTTTCAT
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAC
*
124157549 TTGTCCTTGATCAGATAAGTGTGGCCGAAGCTATCACTTATCACTT
1 TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
124157595 GTTGCCATGG
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 91 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (50 bp):
TTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCAC
Found at i:124162067 original size:46 final size:44
Alignment explanation
Indices: 124161967--124162074 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
124161957 TGTCTTTGAC
** * * *
124161967 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
* *
124162011 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATA--TATAAT
124162057 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
124162075 TTTCGTTCTG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
Found at i:124164080 original size:26 final size:26
Alignment explanation
Indices: 124164051--124164107 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
124164041 GTATTCATAT
*
124164051 ATCACAATATGTATTTGTATCATTAA
1 ATCACAATATGTATTTGTATCATCAA
* * *
124164077 ATCATAGTATGTATTTGTATCGTCAA
1 ATCACAATATGTATTTGTATCATCAA
124164103 ATCAC
1 ATCAC
124164108 GTTATCAACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (26 bp):
ATCACAATATGTATTTGTATCATCAA
Found at i:124170512 original size:12 final size:12
Alignment explanation
Indices: 124170495--124170519 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
124170485 ACATTTTTGC
124170495 TCATGAACATAG
1 TCATGAACATAG
124170507 TCATGAACATAG
1 TCATGAACATAG
124170519 T
1 T
124170520 GATTTCTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TCATGAACATAG
Found at i:124174594 original size:52 final size:52
Alignment explanation
Indices: 124174500--124174684 Score: 214
Period size: 52 Copynumber: 3.5 Consensus size: 52
124174490 TATCCCAGGC
* ** *
124174500 ATGGTCTTATAC-GGAGGCACATTATCAC-ATCATATTGATGCCATAGCCCAACC
1 ATGGTCTTATACGGGA-GCACA-TATCACAAT-ACACCGATGCCATAGCCCAACT
* *
124174553 ATGGTTTTATACGGGAGTACATATCACAATACACCGATGCCATAGCCCAACT
1 ATGGTCTTATACGGGAGCACATATCACAATACACCGATGCCATAGCCCAACT
* * * *
124174605 ATGGTCTTATACGGGCA-CACATATCACAATGCACCAATGCTATAGCCCAAAT
1 ATGGTCTTATACGGG-AGCACATATCACAATACACCGATGCCATAGCCCAACT
*
124174657 ATGGTCTTATACGGGCGCACATATCACA
1 ATGGTCTTATACGGGAGCACATATCACA
124174685 TCATTCTGTC
Statistics
Matches: 115, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
52 94 0.82
53 18 0.16
54 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (52 bp):
ATGGTCTTATACGGGAGCACATATCACAATACACCGATGCCATAGCCCAACT
Found at i:124177823 original size:3 final size:3
Alignment explanation
Indices: 124177815--124177860 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
124177805 TTTAAAATAT
*
124177815 TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
124177861 GTAATCATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:124177962 original size:21 final size:21
Alignment explanation
Indices: 124177936--124178072 Score: 66
Period size: 21 Copynumber: 6.6 Consensus size: 21
124177926 TCACTTATAA
* *
124177936 TATTATTATTGTCGTTACTAT
1 TATTATTATTATCATTACTAT
*
124177957 TATTATTATTATTATTACTAT
1 TATTATTATTATCATTACTAT
* * * *
124177978 TA-TATTTTTTTAAATTACTGT
1 TATTATTATTAT-CATTACTAT
* * *
124177999 TACTATTATT-TCTTTTGCTAT
1 TATTATTATTATC-ATTACTAT
* * **
124178020 T-TAATATATTATTATTACCCT
1 TATTAT-TATTATCATTACTAT
* *
124178041 TATTATTATTATTATT-GTAT
1 TATTATTATTATCATTACTAT
*
124178061 TATTACTATTAT
1 TATTATTATTAT
124178073 TATATTTACT
Statistics
Matches: 86, Mismatches: 24, Indels: 13
0.70 0.20 0.11
Matches are distributed among these distances:
20 21 0.24
21 55 0.64
22 10 0.12
ACGTcount: A:0.28, C:0.08, G:0.04, T:0.60
Consensus pattern (21 bp):
TATTATTATTATCATTACTAT
Found at i:124178063 original size:17 final size:17
Alignment explanation
Indices: 124178041--124178078 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
124178031 TTATTACCCT
* *
124178041 TATTATTATTATTATTG
1 TATTATTACTATTATTA
124178058 TATTATTACTATTATTA
1 TATTATTACTATTATTA
124178075 TATT
1 TATT
124178079 TACTCCTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (17 bp):
TATTATTACTATTATTA
Found at i:124178259 original size:15 final size:15
Alignment explanation
Indices: 124178236--124178265 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
124178226 ATAATTTCAT
*
124178236 ATTATTATTATTATC
1 ATTACTATTATTATC
124178251 ATTACTATTATTATC
1 ATTACTATTATTATC
124178266 CTTTTTTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTACTATTATTATC
Found at i:124181359 original size:2 final size:2
Alignment explanation
Indices: 124181346--124181378 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
124181336 TATTTCTTTC
*
124181346 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
124181379 TATTTACTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Done.