Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 409 of 425
Found at i:124750830 original size:66 final size:68
Alignment explanation
Indices: 124750752--124750938 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
124750742 TAGTACCACT
*
124750752 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
124750814 CACG
65 CACG
124750818 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
124750883 ATCACG
63 ATCACG
124750889 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
124750939 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:124750863 original size:71 final size:71
Alignment explanation
Indices: 124750775--124750938 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
124750765 CGATTTGTCT
124750775 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
124750840 CTTTCA
66 CTTTCA
124750846 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
124750911 CTTTCA
66 CTTTCA
124750917 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
124750939 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:124750976 original size:71 final size:70
Alignment explanation
Indices: 124750775--124750972 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
124750765 CGATTTGTCT
* * * *
124750775 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
124750840 CTTTCA
65 CTTTCA
* * * *
124750846 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
124750911 CTTTCA
65 CTTTCA
* *
124750917 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
124750973 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:124753331 original size:43 final size:44
Alignment explanation
Indices: 124753227--124753377 Score: 141
Period size: 44 Copynumber: 3.5 Consensus size: 44
124753217 TAAAAAAAAA
* * *
124753227 TTAGATCTTAGGACTT-AAATAGGTTAAAGTTTTATTTTTCTCAT
1 TTAGATCTTAGGA-TTCAAATAAGTTAAAGTTTTACTTTTCTAAT
* *
124753271 TTATATTTTAGGATTCAAATAAGTTAAA-TTTTACTTTTCTAAT
1 TTAGATCTTAGGATTCAAATAAGTTAAAGTTTTACTTTTCTAAT
* * * *
124753314 TTAGATCTTAAGG-TTCAAATAGGGTAGAAATTTGT-TTTTTCTAAT
1 TTAGATCTT-AGGATTCAAATAAGTTA-AAGTTT-TACTTTTCTAAT
*
124753359 TTAAATCTTAGGATT-AAAT
1 TTAGATCTTAGGATTCAAAT
124753378 TTTATTTTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
43 33 0.37
44 34 0.38
45 22 0.24
46 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (44 bp):
TTAGATCTTAGGATTCAAATAAGTTAAAGTTTTACTTTTCTAAT
Found at i:124756630 original size:17 final size:17
Alignment explanation
Indices: 124756608--124756641 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
124756598 AAAAATAAAT
124756608 GTTTGTAATGAGTCAAC
1 GTTTGTAATGAGTCAAC
124756625 GTTTGTAATGAGTCAAC
1 GTTTGTAATGAGTCAAC
124756642 CGATCTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (17 bp):
GTTTGTAATGAGTCAAC
Found at i:124761734 original size:66 final size:68
Alignment explanation
Indices: 124761656--124761842 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
124761646 TAGTACCACT
*
124761656 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
124761718 CACG
65 CACG
124761722 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
124761787 ATCACG
63 ATCACG
124761793 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
124761843 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:124761767 original size:71 final size:71
Alignment explanation
Indices: 124761679--124761842 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
124761669 CGATTTGTCT
124761679 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
124761744 CTTTCA
66 CTTTCA
124761750 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
124761815 CTTTCA
66 CTTTCA
124761821 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
124761843 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:124761880 original size:71 final size:70
Alignment explanation
Indices: 124761679--124761876 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
124761669 CGATTTGTCT
* * * *
124761679 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
124761744 CTTTCA
65 CTTTCA
* * * *
124761750 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
124761815 CTTTCA
65 CTTTCA
* *
124761821 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
124761877 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:124764234 original size:43 final size:44
Alignment explanation
Indices: 124764130--124764280 Score: 141
Period size: 44 Copynumber: 3.5 Consensus size: 44
124764120 AAAAAAAAAA
* * *
124764130 TTAGATCTTAGGACTT-AAATAGGTTAAAGTTTTATTTTTCTCAT
1 TTAGATCTTAGGA-TTCAAATAAGTTAAAGTTTTACTTTTCTAAT
* *
124764174 TTATATTTTAGGATTCAAATAAGTTAAA-TTTTACTTTTCTAAT
1 TTAGATCTTAGGATTCAAATAAGTTAAAGTTTTACTTTTCTAAT
* * * *
124764217 TTAGATCTTAAGG-TTCAAATAGGGTAGAAATTTGT-TTTTTCTAAT
1 TTAGATCTT-AGGATTCAAATAAGTTA-AAGTTT-TACTTTTCTAAT
*
124764262 TTAAATCTTAGGATT-AAAT
1 TTAGATCTTAGGATTCAAAT
124764281 TTTATTTTTC
Statistics
Matches: 90, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
43 33 0.37
44 34 0.38
45 22 0.24
46 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (44 bp):
TTAGATCTTAGGATTCAAATAAGTTAAAGTTTTACTTTTCTAAT
Found at i:124772626 original size:66 final size:68
Alignment explanation
Indices: 124772548--124772734 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
124772538 TAGTACCACT
*
124772548 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
124772610 CACG
65 CACG
124772614 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
124772679 ATCACG
63 ATCACG
124772685 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
124772735 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:124772659 original size:71 final size:71
Alignment explanation
Indices: 124772571--124772734 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
124772561 CGATTTGTCT
124772571 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
124772636 CTTTCA
66 CTTTCA
124772642 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
124772707 CTTTCA
66 CTTTCA
124772713 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
124772735 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:124772772 original size:71 final size:70
Alignment explanation
Indices: 124772571--124772768 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
124772561 CGATTTGTCT
* * * *
124772571 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
124772636 CTTTCA
65 CTTTCA
* * * *
124772642 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
124772707 CTTTCA
65 CTTTCA
* *
124772713 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
124772769 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:124775127 original size:43 final size:44
Alignment explanation
Indices: 124775023--124775173 Score: 141
Period size: 44 Copynumber: 3.5 Consensus size: 44
124775013 TAAAAAAAAA
* * *
124775023 TTAGATCTTAGGACTT-AAATAGGTTAAAGTTTTATTTTTCTCAT
1 TTAGATCTTAGGA-TTCAAATAAGTTAAAGTTTTACTTTTCTAAT
* *
124775067 TTATATTTTAGGATTCAAATAAGTTAAA-TTTTACTTTTCTAAT
1 TTAGATCTTAGGATTCAAATAAGTTAAAGTTTTACTTTTCTAAT
* * * *
124775110 TTAGATCTTAAGG-TTCAAATAGGGTAGAAATTTGT-TTTTTCTAAT
1 TTAGATCTT-AGGATTCAAATAAGTTA-AAGTTT-TACTTTTCTAAT
*
124775155 TTAAATCTTAGGATT-AAAT
1 TTAGATCTTAGGATTCAAAT
124775174 TTTATTTTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
43 33 0.37
44 34 0.38
45 22 0.24
46 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (44 bp):
TTAGATCTTAGGATTCAAATAAGTTAAAGTTTTACTTTTCTAAT
Found at i:124778430 original size:17 final size:17
Alignment explanation
Indices: 124778408--124778441 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
124778398 AAAAATAAAT
124778408 GTTTGTAATGAGTCAAC
1 GTTTGTAATGAGTCAAC
124778425 GTTTGTAATGAGTCAAC
1 GTTTGTAATGAGTCAAC
124778442 CGATCTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (17 bp):
GTTTGTAATGAGTCAAC
Found at i:124780967 original size:16 final size:16
Alignment explanation
Indices: 124780948--124780995 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
124780938 TTTACATGAT
124780948 TATAATTTTAAAAAAA
1 TATAATTTTAAAAAAA
* *
124780964 TATAATTTCAAATAAA
1 TATAATTTTAAAAAAA
124780980 TGATGAATTTTCAAAA
1 T-AT-AATTTT-AAAA
124780996 TAATTTAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 15 0.60
17 2 0.08
18 5 0.20
19 3 0.12
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (16 bp):
TATAATTTTAAAAAAA
Found at i:124784019 original size:18 final size:18
Alignment explanation
Indices: 124783996--124784030 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
124783986 ATTTATACTT
124783996 ATAATTTATTATAATTTA
1 ATAATTTATTATAATTTA
* *
124784014 ATAATTTTTTATGATTT
1 ATAATTTATTATAATTT
124784031 TTTTATATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
ATAATTTATTATAATTTA
Found at i:124786794 original size:18 final size:18
Alignment explanation
Indices: 124786747--124786795 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 18
124786737 TCAATGCAGT
124786747 GATTCTCTAAATTTGATTG
1 GATTCTC-AAATTTGATTG
*
124786766 GATTTTC-AATTTGAATTG
1 GATTCTCAAATTTG-ATTG
124786784 G-TTCTCAAATTT
1 GATTCTCAAATTT
124786796 ACATGTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 10 0.38
18 10 0.38
19 6 0.23
ACGTcount: A:0.27, C:0.10, G:0.14, T:0.49
Consensus pattern (18 bp):
GATTCTCAAATTTGATTG
Found at i:124790462 original size:3 final size:3
Alignment explanation
Indices: 124790454--124790509 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
124790444 CTAAGGCCTT
124790454 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
124790502 TTA TTA TT
1 TTA TTA TT
124790510 TCAAAATGTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:124793404 original size:126 final size:127
Alignment explanation
Indices: 124793173--124793405 Score: 308
Period size: 126 Copynumber: 1.8 Consensus size: 127
124793163 GTCGACTTTA
* * ** * *
124793173 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTCGAGGGATCGTGCCCTAATGTGTTGGATTTCG
1 TAAAACAAAAGCGATGGTTGATGTTTAGAAATTCGAGAAATCATGCCCTAATGTGCTGGATTTCG
* * ** *
124793238 ATCTTTTACTTGTCTAAATAATCAGATTTCCCTTTTAAATTTTATCCGCGTTTTCTAATCTT
66 ATCTTTTACTTATCTAAATAATCAAACATCCCTTTAAAATTTTATCCGCGTTTTCTAATCTT
* * *
124793300 TAAAACAAAAGCGATGGTTGATGTTTGGGAATTTG-GAAATCATGCCCTAATGTGCTGGATTTCG
1 TAAAACAAAAGCGATGGTTGATGTTTAGAAATTCGAGAAATCATGCCCTAATGTGCTGGATTTCG
*
124793364 AT-TTTCTATTTATCTAAATAATCAAACATCCCTTTAAAATTT
66 ATCTTT-TACTTATCTAAATAATCAAACATCCCTTTAAAATTT
124793406 CGTCTGCATT
Statistics
Matches: 90, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
125 3 0.03
126 57 0.63
127 30 0.33
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (127 bp):
TAAAACAAAAGCGATGGTTGATGTTTAGAAATTCGAGAAATCATGCCCTAATGTGCTGGATTTCG
ATCTTTTACTTATCTAAATAATCAAACATCCCTTTAAAATTTTATCCGCGTTTTCTAATCTT
Found at i:124797997 original size:19 final size:19
Alignment explanation
Indices: 124797975--124798018 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
124797965 TGAAACTAGT
*
124797975 ATCAATATTCCCAATAATA
1 ATCAATATTCCCAAGAATA
124797994 ATCAATATTCCCAAGAATA
1 ATCAATATTCCCAAGAATA
124798013 AGTCAA
1 A-TCAA
124798019 AAGGAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (19 bp):
ATCAATATTCCCAAGAATA
Found at i:124798471 original size:13 final size:13
Alignment explanation
Indices: 124798453--124798480 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
124798443 AAATATGGGT
124798453 TAGCATATGTCCA
1 TAGCATATGTCCA
124798466 TAGCATATGTCCA
1 TAGCATATGTCCA
124798479 TA
1 TA
124798481 TCTTCTTGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (13 bp):
TAGCATATGTCCA
Found at i:124807063 original size:19 final size:19
Alignment explanation
Indices: 124807041--124807084 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
124807031 TGAAACTAGT
*
124807041 ATCAATATTCCCAATAATA
1 ATCAATATTCCCAAGAATA
124807060 ATCAATATTCCCAAGAATA
1 ATCAATATTCCCAAGAATA
124807079 AGTCAA
1 A-TCAA
124807085 AAGGAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (19 bp):
ATCAATATTCCCAAGAATA
Found at i:124811040 original size:32 final size:33
Alignment explanation
Indices: 124810997--124811058 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
124810987 CAAAACAAAT
124810997 TTATTTGTAAAAA-ATATAATAATAAATTTAAAA
1 TTATTTGTAAAAATA-ATAATAATAAATTTAAAA
**
124811030 TTATTT-TAAAAATAATAATTTTAAATTTA
1 TTATTTGTAAAAATAATAATAATAAATTTA
124811059 CGAGTTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 19 0.73
33 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (33 bp):
TTATTTGTAAAAATAATAATAATAAATTTAAAA
Found at i:124812638 original size:21 final size:21
Alignment explanation
Indices: 124812589--124812644 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
124812579 TAAGAAAACA
124812589 AAATATAAA-AAT-TTACCAT
1 AAATATAAATAATATTACCAT
* *
124812608 AAA-AGGAAATAATATTATCAT
1 AAATA-TAAATAATATTACCAT
*
124812629 AAATATAAATATTATT
1 AAATATAAATAATATT
124812645 TATCTTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 6 0.21
20 3 0.10
21 18 0.62
22 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (21 bp):
AAATATAAATAATATTACCAT
Found at i:124815005 original size:165 final size:165
Alignment explanation
Indices: 124814733--124815053 Score: 633
Period size: 165 Copynumber: 1.9 Consensus size: 165
124814723 TAAGCATACT
124814733 TAAAACATGTAGATCAAAATTTAAACACTAGCCATGTTAAGAAAAGGAAAATAATCCTTTAAAAT
1 TAAAACATGTAGATCAAAATTTAAACACTAGCCATGTTAAGAAAAGGAAAATAATCCTTTAAAAT
124814798 TTTAGGTAAACGACACCTAATGTCATCAAACTATTAGTAAATTTAAGTTTTGGTCACTCAACTTC
66 TTTAGGTAAACGACACCTAATGTCATCAAACTATTAGTAAATTTAAGTTTTGGTCACTCAACTTC
124814863 AAAAAGTTACAAAATGGTCACTAAACCCTAAACCC
131 AAAAAGTTACAAAATGGTCACTAAACCCTAAACCC
124814898 TAAAACATGTAGATCAAAATTTAAACACTAGCCATGTTAAGAAAAGGAAAATAATCCTTTAAAAT
1 TAAAACATGTAGATCAAAATTTAAACACTAGCCATGTTAAGAAAAGGAAAATAATCCTTTAAAAT
*
124814963 TTTAGGTAAACTACACCTAATGTCATCAAACTATTAGTAAATTTAAGTTTTGGTCACTCAACTTC
66 TTTAGGTAAACGACACCTAATGTCATCAAACTATTAGTAAATTTAAGTTTTGGTCACTCAACTTC
124815028 AAAAAGTTACAAAATGGTCACTAAAC
131 AAAAAGTTACAAAATGGTCACTAAAC
124815054 TATTCAAAAG
Statistics
Matches: 155, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
165 155 1.00
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.29
Consensus pattern (165 bp):
TAAAACATGTAGATCAAAATTTAAACACTAGCCATGTTAAGAAAAGGAAAATAATCCTTTAAAAT
TTTAGGTAAACGACACCTAATGTCATCAAACTATTAGTAAATTTAAGTTTTGGTCACTCAACTTC
AAAAAGTTACAAAATGGTCACTAAACCCTAAACCC
Found at i:124816327 original size:7 final size:7
Alignment explanation
Indices: 124816315--124816347 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
124816305 TTGTTATTTA
124816315 TTTTATT
1 TTTTATT
124816322 TTTTATT
1 TTTTATT
124816329 TTTTATT
1 TTTTATT
124816336 TTTTATT
1 TTTTATT
124816343 TTTTA
1 TTTTA
124816348 ATATATGGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTATT
Found at i:124818182 original size:15 final size:15
Alignment explanation
Indices: 124818162--124818191 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
124818152 TACTCGGTAT
124818162 AAAGATAACATATCC
1 AAAGATAACATATCC
124818177 AAAGATAACATATCC
1 AAAGATAACATATCC
124818192 GTGTCGATCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.20, G:0.07, T:0.20
Consensus pattern (15 bp):
AAAGATAACATATCC
Found at i:124820416 original size:2 final size:2
Alignment explanation
Indices: 124820409--124820434 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
124820399 CAACAACCTT
124820409 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
124820435 AATAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:124820869 original size:12 final size:12
Alignment explanation
Indices: 124820852--124820880 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
124820842 CCATATAATC
124820852 TCTCTTTTACTG
1 TCTCTTTTACTG
124820864 TCTCTTTTACTG
1 TCTCTTTTACTG
124820876 TCTCT
1 TCTCT
124820881 ATATACTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.28, G:0.07, T:0.59
Consensus pattern (12 bp):
TCTCTTTTACTG
Found at i:124822251 original size:26 final size:26
Alignment explanation
Indices: 124822235--124822288 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
124822225 CTTCGTATTC
124822235 TATAGATATATAATATCCATATCTCT
1 TATAGATATATAATATCCATATCTCT
124822261 TATAGATATATAATATCCATATCTCT
1 TATAGATATATAATATCCATATCTCT
124822287 TA
1 TA
124822289 CATGTGTACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.15, G:0.04, T:0.43
Consensus pattern (26 bp):
TATAGATATATAATATCCATATCTCT
Found at i:124836704 original size:35 final size:35
Alignment explanation
Indices: 124836660--124836826 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
124836650 TCCTCATTGA
** *
124836660 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
124836695 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
124836735 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
124836770 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
124836805 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
124836827 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:124836743 original size:75 final size:73
Alignment explanation
Indices: 124836655--124836826 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
124836645 GGTTTTCCTC
** * * **
124836655 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
124836719 TCAGTATGG
65 TCAGTATGG
*
124836728 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
124836793 CTCAGTATGG
64 CTCAGTATGG
124836803 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
124836827 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:124844184 original size:35 final size:35
Alignment explanation
Indices: 124844140--124844306 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
124844130 TCCTCATTGA
** *
124844140 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
124844175 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
124844215 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
124844250 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
124844285 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
124844307 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:124844223 original size:75 final size:73
Alignment explanation
Indices: 124844135--124844306 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
124844125 GGTTTTCCTC
** * * **
124844135 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
124844199 TCAGTATGG
65 TCAGTATGG
*
124844208 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
124844273 CTCAGTATGG
64 CTCAGTATGG
124844283 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
124844307 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:124847028 original size:19 final size:18
Alignment explanation
Indices: 124846981--124847028 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
124846971 TTCAAATATC
124846981 AATATTTTAATAATAAAAT
1 AATA-TTTAATAATAAAAT
* *
124847000 ATTATATTAATATTAAGAAT
1 AATAT-TTAATAATAA-AAT
124847020 AATATTTAA
1 AATATTTAA
124847029 ATTTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.04
19 16 0.67
20 7 0.29
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AATATTTAATAATAAAAT
Found at i:124848761 original size:3 final size:3
Alignment explanation
Indices: 124848755--124848970 Score: 51
Period size: 3 Copynumber: 73.3 Consensus size: 3
124848745 AAAATACAAC
* * * *
124848755 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
124848798 AAT AAT AAC AAT -AT GAC GAT AAT AGT AA- AA- AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * ** * *
124848843 AAT AGT ATT AA- AAGT AAT GCT AAT AAT AAT AAT AAT AAT -CT ATT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
124848887 AAGT TAT AAT GAA- AAT AAT GAT AAT GAT GAT -AT ATT AGAT AAT AAT
1 AA-T AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * * *
124848933 AGT AA- AAT AAT AAGT AAC AAA AAT AAAT TAT AAT AAT A
1 AAT AAT AAT AAT AA-T AAT AAT AAT -AAT AAT AAT AAT A
124848971 GTGATGAGAA
Statistics
Matches: 154, Mismatches: 40, Indels: 38
0.66 0.17 0.16
Matches are distributed among these distances:
2 22 0.14
3 114 0.74
4 18 0.12
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:124848761 original size:22 final size:22
Alignment explanation
Indices: 124848710--124848770 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
124848700 ATAAGTAAAT
* *
124848710 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
124848731 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
124848753 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
124848771 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:124848807 original size:25 final size:26
Alignment explanation
Indices: 124848726--124848807 Score: 72
Period size: 25 Copynumber: 3.4 Consensus size: 26
124848716 ATAAAGGAAA
124848726 ATATAATAAC--AATAATAG-AAAA-
1 ATATAATAACATAATAATAGTAAAAG
* *
124848748 ATACAA-CA-ATAATAATAGTAAAAG
1 ATATAATAACATAATAATAGTAAAAG
*
124848772 ATATAATAACATAATAATA-TAATAG
1 ATATAATAACATAATAATAGTAAAAG
124848797 -TAATAATAACA
1 AT-ATAATAACA
124848808 ATATGACGAT
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
21 1 0.02
22 13 0.27
23 4 0.08
24 6 0.12
25 15 0.31
26 9 0.19
ACGTcount: A:0.63, C:0.06, G:0.05, T:0.26
Consensus pattern (26 bp):
ATATAATAACATAATAATAGTAAAAG
Found at i:124848851 original size:13 final size:13
Alignment explanation
Indices: 124848816--124848854 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
124848806 CAATATGACG
**
124848816 ATAATAGTAAAAA
1 ATAATAGTATTAA
124848829 ATAATA-TATTAA
1 ATAATAGTATTAA
124848841 ATAATAGTATTAA
1 ATAATAGTATTAA
124848854 A
1 A
124848855 AGTAATGCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (13 bp):
ATAATAGTATTAA
Found at i:124848991 original size:16 final size:16
Alignment explanation
Indices: 124848970--124849001 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
124848960 TTATAATAAT
124848970 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
124848986 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
124849002 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:124849134 original size:16 final size:15
Alignment explanation
Indices: 124849105--124849147 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
124849095 TAAACATATG
*
124849105 AAAAATAATGATAGT
1 AAAAATAATAATAGT
124849120 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
124849136 AATAATAATAAT
1 AAAAATAATAAT
124849148 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:124849362 original size:3 final size:3
Alignment explanation
Indices: 124849354--124849379 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
124849344 AAATATACAC
124849354 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
124849380 TTAAAATGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:124849869 original size:27 final size:27
Alignment explanation
Indices: 124849839--124849910 Score: 117
Period size: 27 Copynumber: 2.7 Consensus size: 27
124849829 GATTTTTTGT
124849839 TATTGAATCTCAAAAAAAAAAATCCCC
1 TATTGAATCTCAAAAAAAAAAATCCCC
* *
124849866 TATTGAATCTCAAAAAAAAAAATCTCT
1 TATTGAATCTCAAAAAAAAAAATCCCC
*
124849893 TCTTGAATCTCAAAAAAA
1 TATTGAATCTCAAAAAAA
124849911 TTTCTTCTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.26
Consensus pattern (27 bp):
TATTGAATCTCAAAAAAAAAAATCCCC
Found at i:124864607 original size:11 final size:11
Alignment explanation
Indices: 124864591--124864663 Score: 53
Period size: 11 Copynumber: 6.6 Consensus size: 11
124864581 AATGTTTATA
124864591 TATTTAATTTT
1 TATTTAATTTT
124864602 TATTTAATTTT
1 TATTTAATTTT
** *
124864613 TAAATAATATAT
1 TATTTAAT-TTT
124864625 T-TTTAATTATTT
1 TATTTAA-T-TTT
* *
124864637 TAGTT-ATCTT
1 TATTTAATTTT
124864647 T-TTTAATTTT
1 TATTTAATTTT
124864657 TATTTAA
1 TATTTAA
124864664 ATTATTGAAC
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
9 2 0.04
10 8 0.17
11 26 0.55
12 9 0.19
13 2 0.04
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (11 bp):
TATTTAATTTT
Found at i:124877335 original size:17 final size:18
Alignment explanation
Indices: 124877313--124877346 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
124877303 TAACTTTAAT
*
124877313 TTAATAT-TTTTTTATTA
1 TTAATATGTTTATTATTA
124877330 TTAATATGTTTATTATT
1 TTAATATGTTTATTATT
124877347 GCAAAGAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTAATATGTTTATTATTA
Found at i:124885267 original size:22 final size:23
Alignment explanation
Indices: 124885239--124885283 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
124885229 TTCAAAACTG
124885239 AAATATT-TTTAAAAATTTTTAA
1 AAATATTATTTAAAAATTTTTAA
* *
124885261 AAATATTATTTTAAATTTTTTAA
1 AAATATTATTTAAAAATTTTTAA
124885284 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
AAATATTATTTAAAAATTTTTAA
Found at i:124885349 original size:29 final size:29
Alignment explanation
Indices: 124885309--124885369 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
124885299 TAATTTGAAA
* *
124885309 AAAATATTAAAA-TTATAAAAATATTAAAT
1 AAAATATTAAAAGTTAAAAAAATA-AAAAT
124885338 AAAAT-TTAAAAAGTTAAAAAAATAAAAAT
1 AAAATATT-AAAAGTTAAAAAAATAAAAAT
124885367 AAA
1 AAA
124885370 TAAAAATCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 2 0.07
29 16 0.57
30 10 0.36
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (29 bp):
AAAATATTAAAAGTTAAAAAAATAAAAAT
Found at i:124885859 original size:21 final size:22
Alignment explanation
Indices: 124885835--124885889 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
124885825 ATTTTTTTGG
*
124885835 AAATTTATTTAAT-TTTTTATA
1 AAATTTATTTAATGTTTTTACA
*
124885856 AAATTTA-ATAATGTTTTTACA
1 AAATTTATTTAATGTTTTTACA
*
124885877 AAAGTATATTTAA
1 AAA-TTTATTTAA
124885890 AAAATTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 4 0.15
21 17 0.63
22 3 0.11
23 3 0.11
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (22 bp):
AAATTTATTTAATGTTTTTACA
Found at i:124890469 original size:30 final size:30
Alignment explanation
Indices: 124890433--124890493 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
124890423 GTTGTGGGCG
*
124890433 AGTAATGTTACCGCTCATAAATTAAATCAT
1 AGTAATGTTACCGCTCACAAATTAAATCAT
* *
124890463 AGTAATGTTACTGCTCACAACTTAAATCAT
1 AGTAATGTTACCGCTCACAAATTAAATCAT
124890493 A
1 A
124890494 CTGCTCTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (30 bp):
AGTAATGTTACCGCTCACAAATTAAATCAT
Found at i:124890497 original size:21 final size:21
Alignment explanation
Indices: 124890471--124890514 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
124890461 ATAGTAATGT
*
124890471 TACTGCTCACAACTTAAATCA
1 TACTGCTCACAAATTAAATCA
*
124890492 TACTGCTCTCAAATTAAATCA
1 TACTGCTCACAAATTAAATCA
124890513 TA
1 TA
124890515 ACGTTGACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.32
Consensus pattern (21 bp):
TACTGCTCACAAATTAAATCA
Found at i:124893831 original size:5 final size:5
Alignment explanation
Indices: 124893821--124893847 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
124893811 ATTACTACAT
124893821 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
124893848 ATAATCTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:124899144 original size:9 final size:8
Alignment explanation
Indices: 124899105--124899143 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
124899095 AATATCTTTG
124899105 AAAAAAAT
1 AAAAAAAT
*
124899113 AAAAATAT
1 AAAAAAAT
**
124899121 ATGAAAAT
1 AAAAAAAT
124899129 AAAAAAAT
1 AAAAAAAT
124899137 AAAAAAA
1 AAAAAAA
124899144 ACTATTTTCA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (8 bp):
AAAAAAAT
Found at i:124900395 original size:26 final size:26
Alignment explanation
Indices: 124900366--124900418 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
124900356 TCAAACATGC
124900366 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
124900392 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
124900418 A
1 A
124900419 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:124901939 original size:26 final size:26
Alignment explanation
Indices: 124901901--124902010 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
124901891 CATGAAATTC
124901901 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
124901927 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
124901953 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
**
124901979 TTATCATGAAACATTTACCTAACATA
1 TTATCATGAAACATTTACCTAACCCA
124902005 TTATCA
1 TTATCA
124902011 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:124903642 original size:21 final size:20
Alignment explanation
Indices: 124903597--124903634 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
124903587 TAAAAAAATT
*
124903597 AAAA-AATAATTTTTTTAAA
1 AAAATAATAATTTTATTAAA
124903616 AAAATAATAGATTTTATTA
1 AAAATAATA-ATTTTATTA
124903635 TAAGAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 4 0.25
21 8 0.50
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (20 bp):
AAAATAATAATTTTATTAAA
Found at i:124914720 original size:40 final size:39
Alignment explanation
Indices: 124914676--124914856 Score: 200
Period size: 39 Copynumber: 4.6 Consensus size: 39
124914666 GCCGGCTATA
* *
124914676 TGCTGGAATTATATCCGGGCTTAAAGACCCACAGGCTTCG
1 TGCTGGAATTATATCCGGACTT-AAGATCCACAGGCTTCG
* * * * * *
124914716 TGCTGGAATTGTATCCGGACATAAGGTCCACATGTTTCA
1 TGCTGGAATTATATCCGGACTTAAGATCCACAGGCTTCG
*
124914755 TGCTGGAATTGTATCCGGACTTAAGATCCACAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGATCCACAGGCTTCG
* * * *
124914794 TGCTGGTACTATATCCAGACTTAAGGTCCACAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGATCCACAGGCTTCG
* * * *
124914833 TACTGGTACTATATCCGGGCTTAA
1 TGCTGGAATTATATCCGGACTTAA
124914857 AGTCCCGTAG
Statistics
Matches: 120, Mismatches: 21, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
39 101 0.84
40 19 0.16
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (39 bp):
TGCTGGAATTATATCCGGACTTAAGATCCACAGGCTTCG
Found at i:124914809 original size:78 final size:79
Alignment explanation
Indices: 124914675--124914858 Score: 226
Period size: 78 Copynumber: 2.3 Consensus size: 79
124914665 CGCCGGCTAT
* * * *
124914675 ATGCTGGAATTATATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGAATTGTATCCGGACATAA
1 ATGCTGGAATTATATCCGGACTTAAAGACCCACAGGCTTCGTGCTGGAACTATATCCAGACATAA
124914740 GGTCCACATGTTTC
66 GGTCCACATGTTTC
* * * *
124914754 ATGCTGGAATTGTATCCGGACTT-AAGATCCACAGGCTTCGTGCTGGTACTATATCCAGACTTAA
1 ATGCTGGAATTATATCCGGACTTAAAGACCCACAGGCTTCGTGCTGGAACTATATCCAGACATAA
* *
124914818 GGTCCACAGGCTTC
66 GGTCCACATGTTTC
* * * * *
124914832 GTACTGGTACTATATCCGGGCTTAAAG
1 ATGCTGGAATTATATCCGGACTTAAAG
124914859 TCCCGTAGGC
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 64 0.73
79 24 0.27
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (79 bp):
ATGCTGGAATTATATCCGGACTTAAAGACCCACAGGCTTCGTGCTGGAACTATATCCAGACATAA
GGTCCACATGTTTC
Found at i:124929317 original size:2 final size:2
Alignment explanation
Indices: 124929310--124929334 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
124929300 TGGCATCTAC
124929310 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
124929335 AATTTATACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:124930392 original size:2 final size:2
Alignment explanation
Indices: 124930357--124930423 Score: 84
Period size: 2 Copynumber: 34.5 Consensus size: 2
124930347 GTTTTTGTGG
* * * *
124930357 TA TA -A TA TA AA TA TA AA TA TA AA TA TA AA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
124930398 TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
124930424 TAGTATATTG
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
1 2 0.04
2 53 0.96
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:124931449 original size:16 final size:17
Alignment explanation
Indices: 124931423--124931456 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
124931413 AGTTAAATTA
124931423 ATTACATATGAATTATT
1 ATTACATATGAATTATT
*
124931440 ATTA-ATATGAGTTATT
1 ATTACATATGAATTATT
124931456 A
1 A
124931457 AATTTGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (17 bp):
ATTACATATGAATTATT
Found at i:124932111 original size:26 final size:25
Alignment explanation
Indices: 124932068--124932116 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
124932058 AACTCCACTA
124932068 ACCCACAAACCCAAACAATAACCCTT
1 ACCCACAAACCCAAACAA-AACCCTT
*
124932094 ACCCA-AAACCCATTACAAAACCC
1 ACCCACAAACCCA-AACAAAACCC
124932117 AAATACCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.47, C:0.43, G:0.00, T:0.10
Consensus pattern (25 bp):
ACCCACAAACCCAAACAAAACCCTT
Found at i:124943422 original size:28 final size:28
Alignment explanation
Indices: 124943382--124943437 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
124943372 CCATGCGGAG
124943382 GTGAAAACCTCACGAAAGCATAGTTTCT
1 GTGAAAACCTCACGAAAGCATAGTTTCT
124943410 GTGAAAACCTCACGAAAGCATAGTTTCT
1 GTGAAAACCTCACGAAAGCATAGTTTCT
124943438 TACTCCCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (28 bp):
GTGAAAACCTCACGAAAGCATAGTTTCT
Found at i:124944377 original size:131 final size:132
Alignment explanation
Indices: 124944205--124944570 Score: 452
Period size: 131 Copynumber: 2.8 Consensus size: 132
124944195 GAATTTGGAG
* *
124944205 AACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAAC-AGGAGATCGCAACCCAGC
1 AACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGA-GAAATCGCAACCCAGC
* * * **
124944269 ACGATAGAGAACGATTCCCCGAATTGCCAATCATCGAGCACTACCTTTGTTTTGGAGAATTTTTA
65 ACGATAGGGAACGATTCCCCGAATTGCCAAACATCGAACACTACCTTTGTTTTAAAGAATTTTTA
124944334 -AA
130 GAA
* * * *
124944336 AGA-ATGAGTGAAATCCCAAAGGAATATTCGATTGTTTTGAACAAATGAGAAATCGCAACCCAAC
1 A-ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAGC
* * ** * * *
124944400 ACGATAGGGTACGACTCCCTAAATTGCCAAACATCGAACATTTCCTTTGTTTTAAAGAGTTTTTA
65 ACGATAGGGAACGATTCCCCGAATTGCCAAACATCGAACACTACCTTTGTTTTAAAGAATTTTTA
124944465 GAA
130 GAA
* ** * *
124944468 AACATGAGTGAAATTCC-AAGGGACGTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCA
1 AACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAGCA
* * *
124944532 CGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACA
66 CGATAGGGAACGATTCCCCGAATTGCCAAACATCGAACA
124944571 TCGCCTTCAT
Statistics
Matches: 198, Mismatches: 33, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
131 180 0.91
132 18 0.09
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (132 bp):
AACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGAGAAATCGCAACCCAGCA
CGATAGGGAACGATTCCCCGAATTGCCAAACATCGAACACTACCTTTGTTTTAAAGAATTTTTAG
AA
Found at i:124946849 original size:2 final size:2
Alignment explanation
Indices: 124946842--124946874 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
124946832 ATATAAAACA
*
124946842 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
124946875 AGTAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:124948599 original size:83 final size:83
Alignment explanation
Indices: 124948474--124948811 Score: 550
Period size: 83 Copynumber: 4.1 Consensus size: 83
124948464 ATGTCAAATT
* * *
124948474 ATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGCTCCTTGTAA
1 ATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAA
* *
124948539 GCACAAGGATGCCAAACC
66 ACACAAGGATACCAAACC
* *
124948557 ATCTTGAGTCTGTTTGAGGACATTTGAGAGTCATATCTGCAATGTCCTCGATTTTTTTCTTGTAA
1 ATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAA
124948622 ACACAAGGATACCAAACC
66 ACACAAGGATACCAAACC
* * *
124948640 ATCTGGAGTTTGTTTGAGAACATTTGAGAGTCACATCTGCAATGTCCTCGATTTGTTTCTTGTAA
1 ATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAA
124948705 ACACAAGGATACCAAACC
66 ACACAAGGATACCAAACC
* *
124948723 ATCTGGAGTTTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAA
1 ATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAA
* *
124948788 ACACAAGAATACCAAATC
66 ACACAAGGATACCAAACC
124948806 ATCTTG
1 ATCTTG
124948812 GATCTGCTTC
Statistics
Matches: 239, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 239 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (83 bp):
ATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAA
ACACAAGGATACCAAACC
Found at i:124948979 original size:119 final size:119
Alignment explanation
Indices: 124948735--124949168 Score: 584
Period size: 119 Copynumber: 3.6 Consensus size: 119
124948725 CTGGAGTTTG
* * * * *
124948735 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
* * *
124948800 CAAATCATCTTGGATCTGCTTCAGTATAAATATCTGAAGGT-TAGATCTGCTATT
66 CAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAA-GTCTGGATCTGCTATT
* *
124948854 TTTGAGAACGTCTGAGAGTCCAATCTACTGTGTCCTCGATTTGTTTCTTGTAAACACAAGAATTA
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAA-TA
124948919 CCAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGTCTGGATCTGCTA-T
65 CCAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGTCTGGATCTGCTATT
** * * *
124948973 ACTGAGAACATCTGAGAGTCAAATCTACTATGTCTTTGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
*
124949038 CAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGTCTGGATCTACTATTTT
66 CAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGTCTGGATCTGCTA--TT
* * * * * * * * *
124949094 TTTTAGAACGTTTGAGAGTCAAATCTGCAACGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
*
124949159 CAAACCATCT
66 CAAATCATCT
124949169 GGAGTTTGTT
Statistics
Matches: 277, Mismatches: 33, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
118 54 0.19
119 113 0.41
120 49 0.18
121 61 0.22
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGTCTGGATCTGCTATT
Found at i:124949318 original size:83 final size:83
Alignment explanation
Indices: 124949098--124949342 Score: 355
Period size: 83 Copynumber: 3.0 Consensus size: 83
124949088 TATTTTTTTT
* * *
124949098 AGAACGTTTGAGAGTCAAATCTGCAACGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
1 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
* * *
124949163 CCATCTGGAGTTTGTTTG
66 CCATCTTGAATCTGTTTG
**
124949181 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTCATAAGCACAAGGATGCCAAA
1 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
124949246 CCATCTTGAATCTGTTTG
66 CCATCTTGAATCTGTTTG
* * * *
124949264 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAA
1 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
* * *
124949329 TCGTCTTGGATCTG
66 CCATCTTGAATCTG
124949343 CTTCAGCATA
Statistics
Matches: 145, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
83 145 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (83 bp):
AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
CCATCTTGAATCTGTTTG
Found at i:124961851 original size:117 final size:117
Alignment explanation
Indices: 124961641--124962029 Score: 548
Period size: 117 Copynumber: 3.4 Consensus size: 117
124961631 CATATCTGCA
*
124961641 ATGTCCTCGATTTGTTTCTTGT-AACACAAGAATACCAAATCATCTT-GATCTGCTTCAGTATAA
1 ATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAA
*
124961704 ATATCTGAAGGT-TAGATCTTGCTATTTGAGAACGTCTGAGAGTCCAATCTACT
66 ACATCTGAA-GTCTAGATC-TGCTATTTGAGAACGTCTGAGAGTCCAATCTACT
*
124961757 GTGTCCTCGATTTGTTTCTTGTAAACACAAG-ATACCAAATCATCTTGGATCTGCTTCAGCATAA
1 ATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAA
* *
124961821 ACATCTGAAGTCTAGATCTGCTATACTGAGAACGTCTGAGAGTCAAATCTACT
66 ACATCTGAAGTCTAGATCTGCTAT-TTGAGAACGTCTGAGAGTCCAATCTACT
*
124961874 ATGTCTTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAA
1 ATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAA
* * *
124961939 ACATCTGAA-TCT-GATCT--TTTTTGAGAACGT-TGAGAGT-CAATCTGCA
66 ACATCTGAAGTCTAGATCTGCTATTTGAGAACGTCTGAGAGTCCAATCTACT
* * * * *
124961985 ACGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA-CATCT
1 ATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCT
124962030 GGAGTTGTTT
Statistics
Matches: 250, Mismatches: 18, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
110 5 0.02
111 40 0.16
112 7 0.03
113 9 0.04
114 2 0.01
116 49 0.20
117 96 0.38
118 42 0.17
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (117 bp):
ATGTCCTCGATTTGTTTCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAA
ACATCTGAAGTCTAGATCTGCTATTTGAGAACGTCTGAGAGTCCAATCTACT
Found at i:124962074 original size:79 final size:82
Alignment explanation
Indices: 124961958--124962182 Score: 333
Period size: 79 Copynumber: 2.8 Consensus size: 82
124961948 TCTGATCTTT
* *
124961958 TTTGAGAAC-GTTGAGAGTCA-ATCTGCAACGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
124962021 CAAA-CATCTGGAGT-TG
66 CAAACCATCTGGA-TCTG
124962037 TTTGAGAACATTTGAGAGTCATATCT-C-ATGTCCTCGATTTGTTCC-TGTAAGCACAAGGATGC
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
*
124962099 CAAACCATCTTGATCTG
66 CAAACCATCTGGATCTG
* *
124962116 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAA-CACAA-GATAC
1 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
124962179 CAAA
66 CAAA
124962183 TGTCTTGGAT
Statistics
Matches: 134, Mismatches: 5, Indels: 13
0.88 0.03 0.09
Matches are distributed among these distances:
78 22 0.16
79 61 0.46
80 20 0.15
81 26 0.19
82 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (82 bp):
TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
CAAACCATCTGGATCTG
Found at i:124974192 original size:2 final size:2
Alignment explanation
Indices: 124974185--124974221 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
124974175 ATATAAAACA
*
124974185 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
124974222 AGTAATTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:124974925 original size:12 final size:12
Alignment explanation
Indices: 124974908--124974940 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
124974898 CCTTTGTACG
*
124974908 CCACGCGCCGGC
1 CCACGCGCCAGC
124974920 CCACGCGCCAGC
1 CCACGCGCCAGC
124974932 CCACGCGCC
1 CCACGCGCC
124974941 CACACGCCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.61, G:0.27, T:0.00
Consensus pattern (12 bp):
CCACGCGCCAGC
Found at i:124975896 original size:2 final size:2
Alignment explanation
Indices: 124975889--124975918 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
124975879 TTTAAAATAA
*
124975889 AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124975919 GTAACAGCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:124978275 original size:14 final size:14
Alignment explanation
Indices: 124978256--124978282 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
124978246 GAAAACAACC
124978256 AAAATAAATAAAAT
1 AAAATAAATAAAAT
124978270 AAAATAAATAAAA
1 AAAATAAATAAAA
124978283 CATAGACTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAATAAATAAAAT
Found at i:124979716 original size:9 final size:9
Alignment explanation
Indices: 124979702--124979731 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
124979692 TTGAGGAAAC
*
124979702 CTTGGTATG
1 CTTGGTTTG
124979711 CTTGGTTTG
1 CTTGGTTTG
124979720 CTTGGTTTG
1 CTTGGTTTG
124979729 CTT
1 CTT
124979732 TGTGGCTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.03, C:0.13, G:0.30, T:0.53
Consensus pattern (9 bp):
CTTGGTTTG
Found at i:124982002 original size:21 final size:20
Alignment explanation
Indices: 124981976--124982022 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
124981966 AAGATATACC
* *
124981976 TATATATATATATATTAAAGA
1 TATATACATATATAATAAA-A
*
124981997 TATATACATATGTAATAAAA
1 TATATACATATATAATAAAA
124982017 TATATA
1 TATATA
124982023 AATAACATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (20 bp):
TATATACATATATAATAAAA
Found at i:124982130 original size:28 final size:26
Alignment explanation
Indices: 124982063--124982133 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 26
124982053 ATATGTTTGA
124982063 TAAAAATAATAAT-ATACATAATATAT
1 TAAAAAT-ATAATAATACATAATATAT
* * *
124982089 AAAAAATACAAATAATATATACATATAT
1 TAAAAATA-TAATAATACATA-ATATAT
124982117 TAAAAATGATAATAATA
1 TAAAAAT-ATAATAATA
124982134 AAAAACAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
25 1 0.03
26 9 0.25
27 6 0.17
28 19 0.53
29 1 0.03
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.31
Consensus pattern (26 bp):
TAAAAATATAATAATACATAATATAT
Found at i:124982134 original size:31 final size:33
Alignment explanation
Indices: 124982060--124982134 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 33
124982050 GCAATATGTT
124982060 TGATAAAAATAATAATATACATAATATATAAAAA
1 TGAT-AAAATAATAATATACATAATATATAAAAA
124982094 --ATACAAATAAT-ATATACAT-ATAT-TAAAAA
1 TGATA-AAATAATAATATACATAATATATAAAAA
124982123 TGATAATAATAA
1 TGATAA-AATAA
124982135 AAAACAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
29 6 0.16
30 5 0.14
31 17 0.46
32 9 0.24
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.31
Consensus pattern (33 bp):
TGATAAAATAATAATATACATAATATATAAAAA
Found at i:124982205 original size:3 final size:3
Alignment explanation
Indices: 124982185--124982227 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
124982175 ATCTATGTAC
*
124982185 TAA TAA TAT TAA TAAA TAA TAGA TAA TAA TAA -AA TAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
124982228 CGATAATAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 27 0.77
4 6 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:124982232 original size:23 final size:22
Alignment explanation
Indices: 124982185--124982241 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
124982175 ATCTATGTAC
*
124982185 TAATAATATTAATAAATAATAGA
1 TAATAATA-AAATAAATAATAGA
124982208 TAATAATAAAAT-AATAATAACGA
1 TAATAATAAAATAAATAAT-A-GA
*
124982231 TAATAGTAAAA
1 TAATAATAAAA
124982242 ATACAAAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 6 0.20
22 4 0.13
23 20 0.67
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (22 bp):
TAATAATAAAATAAATAATAGA
Found at i:124982477 original size:24 final size:23
Alignment explanation
Indices: 124982436--124982484 Score: 84
Period size: 22 Copynumber: 2.2 Consensus size: 23
124982426 TAAGTATGGT
124982436 ATAATATAACAATGATAATAATA
1 ATAATATAACAATGATAATAATA
124982459 ATAA-ATAACAATGAT-ATAATA
1 ATAATATAACAATGATAATAATA
124982480 ATAAT
1 ATAAT
124982485 CTAGTGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.40
22 11 0.44
23 4 0.16
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (23 bp):
ATAATATAACAATGATAATAATA
Found at i:124983302 original size:133 final size:133
Alignment explanation
Indices: 124983064--124983321 Score: 390
Period size: 133 Copynumber: 1.9 Consensus size: 133
124983054 AGGTAAACCT
** * * *
124983064 TGAAGTTGCAGTGGATTAGATCGAAGACGGTGAATCCTGTCTTCCTGAAGTTGCAGTGAAGAAGA
1 TGAAGTTGCAGTGGAGCAGATCGAAAACGGTGAATCCTGGCTTCCTGAAGTTGCAGTAAAGAAGA
* * *
124983129 TTTAAGCCACCATCCTATCTCCTTAAAGTTGTAGTAGAGTAAGCTAAAGATTGTAGATCTTGTTT
66 TTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTAGAGTAAGCTAAAGATTGCAGATCTTGTTT
124983194 CCC
131 CCC
* * *
124983197 TGAAGTTGCAGTGGAGCGGATCGAAAACGGTGAATCTTGGCTTCCTGAAGTTGCAGTAAAGCAGA
1 TGAAGTTGCAGTGGAGCAGATCGAAAACGGTGAATCCTGGCTTCCTGAAGTTGCAGTAAAGAAGA
* * *
124983262 TTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTACGCTGAAGATTGCAGATCT
66 TTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTAGAGTAAGCTAAAGATTGCAGATCT
124983322 CGTCTCCAGT
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
133 111 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (133 bp):
TGAAGTTGCAGTGGAGCAGATCGAAAACGGTGAATCCTGGCTTCCTGAAGTTGCAGTAAAGAAGA
TTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTAGAGTAAGCTAAAGATTGCAGATCTTGTTT
CCC
Found at i:124985045 original size:2 final size:2
Alignment explanation
Indices: 124985038--124985067 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
124985028 GTGTTGTTAC
124985038 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124985068 TTATTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:124985072 original size:4 final size:4
Alignment explanation
Indices: 124985065--124985089 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
124985055 TATATATATA
124985065 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
124985090 TAAAACTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:124986306 original size:131 final size:130
Alignment explanation
Indices: 124986139--124986501 Score: 442
Period size: 131 Copynumber: 2.8 Consensus size: 130
124986129 AATGAAGGCG
* * *
124986139 ATGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
1 ATGTTCGATGTTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGT
* * * * ***
124986204 TCAAAATAATCTAAT-GTCCCTTGGAATTTCACTCATGTTTTCTAAAAACTCTTTTAAACAAAGG
65 TCAAAATAATCAAATATTCCTTTGGAATTTCACTCATGCTTT-TAAAAACTCTCCAAAACAAAGG
124986268 AA
129 AA
* * *
124986270 ATGTTCGATGTTTGGCAATTCGGAGAGTCGTACCCTATCGTGTTGGGTTGCGATTTCTCGTTTGT
1 ATGTTCGATGTTTGGCAATTCGG-GAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGT
* * * * * *
124986335 TCAAAACAATCGAATATTCCTTTGGGATTTCACTCATGCTTTTAAAAATTCTCCAAAACGAAGGT
65 TCAAAATAATCAAATATTCCTTTGGAATTTCACTCATGCTTTTAAAAACTCTCCAAAACAAAGGA
124986400 A
130 A
* * * * *
124986401 GTGCTCGATGTTTGGCAATTCGGGGAATCGTGCTCTATTGTGCTGGGTTGCGATCTC-CTGTTTG
1 ATGTTCGATGTTTGGCAATTC-GGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTC-GTTTG
*
124986465 TTCAAAATAATCAAATATTCCTTTAGAATTTCACTCA
64 TTCAAAATAATCAAATATTCCTTTGGAATTTCACTCA
124986502 CGTTCTCCAA
Statistics
Matches: 198, Mismatches: 30, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
130 2 0.01
131 172 0.87
132 24 0.12
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (130 bp):
ATGTTCGATGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTT
CAAAATAATCAAATATTCCTTTGGAATTTCACTCATGCTTTTAAAAACTCTCCAAAACAAAGGAA
Found at i:124987775 original size:19 final size:19
Alignment explanation
Indices: 124987751--124987829 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
124987741 AATCTTTAAG
124987751 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
124987770 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
124987789 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
124987806 GATATGTAATCTTGCAGATAT
1 GATATGCAATCTT--AGATAT
124987827 GAT
1 GAT
124987830 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
21 9 0.16
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:124987781 original size:36 final size:35
Alignment explanation
Indices: 124987741--124987828 Score: 99
Period size: 36 Copynumber: 2.4 Consensus size: 35
124987731 ATGGAGATAT
124987741 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTT-A-GATATGACAATCTTAGATATGATATGC
*
124987777 AATC-TTAGATATGATACAATCTTAGATATGATATGT
1 AATCTTTAGATATG--ACAATCTTAGATATGATATGC
*
124987813 AATCTTGCAGATATGA
1 AATCTT-TAGATATGA
124987829 TCTTGTAATC
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 28 0.62
37 1 0.02
38 7 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (35 bp):
AATCTTTAGATATGACAATCTTAGATATGATATGC
Found at i:124987838 original size:22 final size:21
Alignment explanation
Indices: 124987751--124987846 Score: 82
Period size: 19 Copynumber: 4.9 Consensus size: 21
124987741 AATCTTTAAG
*
124987751 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGCAGATAT
*
124987770 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGCAGATAT
*
124987789 GATA--CAATCTT--AGATAT
1 GATATGTAATCTTGCAGATAT
124987806 GATATGTAATCTTGCAGATAT
1 GATATGTAATCTTGCAGATAT
* *
124987827 GATCTTGTAATCTTGGAGAT
1 GAT-ATGTAATCTTGCAGAT
124987847 TTAATTTGTA
Statistics
Matches: 69, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.25
19 29 0.42
21 9 0.13
22 14 0.20
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (21 bp):
GATATGTAATCTTGCAGATAT
Found at i:124989571 original size:64 final size:64
Alignment explanation
Indices: 124989498--124989708 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
124989488 CTGGGCCAGA
*
124989498 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
124989562 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
124989624 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
124989635 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
124989699 GCCCATTTCA
1 GCCCATTTCA
124989709 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:124989710 original size:137 final size:137
Alignment explanation
Indices: 124989464--124989750 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
124989454 TATTGGGCCT
** *
124989464 AAGCCCATTCAGGTAATAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
124989529 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
124989594 CATATGC
131 CATATGC
124989601 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
124989666 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
124989731 CATATGC
131 CATATGC
124989738 AAGCCCATTTGGG
1 AAGCCCATTTGGG
124989751 GAGACTACTC
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:124991699 original size:26 final size:26
Alignment explanation
Indices: 124991537--124991698 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
124991527 CATGAAATTC
*
124991537 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
124991563 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
124991589 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
124991615 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
124991641 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
124991667 TTATCAAGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
124991693 TTATCA
1 TTATCA
124991699 ATTTGTATCA
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 130 1.00
ACGTcount: A:0.38, C:0.24, G:0.04, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:125000551 original size:45 final size:44
Alignment explanation
Indices: 125000503--125001226 Score: 340
Period size: 45 Copynumber: 17.0 Consensus size: 44
125000493 GAACAAGTTG
* **
125000503 AAGATAACAGATCTTATCTCTCTGTATTCGACGGGGAGCAGATTG
1 AAGATGACAGATCTTATCTCTCTGTATT-GACGGGGAGCAGATCC
* * * *
125000548 AAGACTTAGCAGATCTGA-C-CT-T-CATT----GGG-GCAGATAC
1 AAGA-TGA-CAGATCTTATCTCTCTGTATTGACGGGGAGCAGATCC
* * * *
125000585 AAGATGACAGATCTTATCTCTCTATAATAGGCGGGGAGTAGATCC
1 AAGATGACAGATCTTATCTCTCTGT-ATTGACGGGGAGCAGATCC
* * *
125000630 AAGATGACAGATCTTATCTCTCTATATTCGACGGGGAGTAGATCA
1 AAGATGACAGATCTTATCTCTCTGTATT-GACGGGGAGCAGATCC
* *
125000675 AAGACAT-AGCAGATCTGA-C-CT-T-CA-T--C-GGG-GCAGATCC
1 AAG--ATGA-CAGATCTTATCTCTCTGTATTGACGGGGAGCAGATCC
* * * * *
125000712 AAGATGACAGATCTTATCTCTCCGTAATGGATGGGGAGTAGATCA
1 AAGATGACAGATCTTATCTCTCTGT-ATTGACGGGGAGCAGATCC
* * *
125000757 AAGATGACAGATCTTATCTCTTTGTAATGAGCGGGGAGTAGATCC
1 AAGATGACAGATCTTATCTCTCTGTATTGA-CGGGGAGCAGATCC
* * *
125000802 AAGATGACAGATCTTATCTCTCTATATTCGACTGGGAGCAGATCG
1 AAGATGACAGATCTTATCTCTCTGTATT-GACGGGGAGCAGATCC
* * *
125000847 AAGACAT-AGTAGATCTGA-C-CT-T-CA-T--C-GGG-GCAGATCC
1 AAG--ATGA-CAGATCTTATCTCTCTGTATTGACGGGGAGCAGATCC
* * * ** * *
125000884 AAGATGACAGATCTTATATCTCTGTAATGGGCGAAGAGTAGATCT
1 AAGATGACAGATCTTATCTCTCTGT-ATTGACGGGGAGCAGATCC
* * * * *
125000929 AAGATGACAGATCTTATCTCTCTGTAATGGACAGAGAGTAGATCT
1 AAGATGACAGATCTTATCTCTCTGT-ATTGACGGGGAGCAGATCC
* *
125000974 AAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCA
1 AAGATGACAGATCTTATCTCTCTGTATT-GACGGGGAGCAGATCC
* *
125001019 AAGACAT-ATCAGATCTGA-C-CT-T-TA-T--C-GGG-GCAGATCT
1 AAG--ATGA-CAGATCTTATCTCTCTGTATTGACGGGGAGCAGATCC
*
125001056 AAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGCAGATCA
1 AAGATGACAGATCTTATCTCTCTGTATT-GACGGGGAGCAGATCC
* * *
125001101 AAGACAT-AGCAGATCTGA-C-CT-T-CA-T--C-GAG-GCAGATCC
1 AAG--ATGA-CAGATCTTATCTCTCTGTATTGACGGGGAGCAGATCC
* * * * * * *
125001138 AAGATGGCGGATCTTATCCCTCCGTAATGGACGGAGAGTAGATCC
1 AAGATGACAGATCTTATCTCTCTGT-ATTGACGGGGAGCAGATCC
* *
125001183 AAGATGACAGATCTTATCTCTCTGTATTCAATGGGGAGCAGATC
1 AAGATGACAGATCTTATCTCTCTGTATT-GACGGGGAGCAGATC
125001227 GAAAACATAG
Statistics
Matches: 523, Mismatches: 83, Indels: 146
0.70 0.11 0.19
Matches are distributed among these distances:
35 46 0.09
36 9 0.02
37 58 0.11
38 17 0.03
39 6 0.01
40 6 0.01
42 4 0.01
43 11 0.02
44 27 0.05
45 279 0.53
46 13 0.02
47 47 0.09
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
AAGATGACAGATCTTATCTCTCTGTATTGACGGGGAGCAGATCC
Found at i:125000729 original size:127 final size:127
Alignment explanation
Indices: 125000503--125000805 Score: 439
Period size: 127 Copynumber: 2.4 Consensus size: 127
125000493 GAACAAGTTG
* * ** *
125000503 AAGATAACAGATCTTATCTCTCTGTATTCGACGGGGAGCAGATTGAAGACTTAGCAGATCTGACC
1 AAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGACATAGCAGATCTGACC
* * *
125000568 TTCATTGGGGCAGATACAAGATGACAGATCTTATCTCTCTATAATAGG-CGGGGAGTAGATCC
66 TTCATCGGGGCAGATACAAGATGACAGATCTTATCTCTCCATAAT-GGACGGGGAGTAGATCA
*
125000630 AAGATGACAGATCTTATCTCTCTATATTCGACGGGGAGTAGATCAAAGACATAGCAGATCTGACC
1 AAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGACATAGCAGATCTGACC
* * *
125000695 TTCATCGGGGCAGATCCAAGATGACAGATCTTATCTCTCCGTAATGGATGGGGAGTAGATCA
66 TTCATCGGGGCAGATACAAGATGACAGATCTTATCTCTCCATAATGGACGGGGAGTAGATCA
* * *
125000757 AAGATGACAGATCTTATCTCTTTGTAAT-GAGCGGGGAGTAGATCCAAGA
1 AAGATGACAGATCTTATCTCTCTGTATTCGA-CGGGGAGTAGATCAAAGA
125000806 TGACAGATCT
Statistics
Matches: 158, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
126 4 0.03
127 154 0.97
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (127 bp):
AAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGACATAGCAGATCTGACC
TTCATCGGGGCAGATACAAGATGACAGATCTTATCTCTCCATAATGGACGGGGAGTAGATCA
Found at i:125000871 original size:172 final size:172
Alignment explanation
Indices: 125000585--125001104 Score: 794
Period size: 172 Copynumber: 3.0 Consensus size: 172
125000575 GGGCAGATAC
*
125000585 AAGATGACAGATCTTATCTCTCTATAAT-AGGCGGGGAGTAGATCCAAGATGACAGATCTTATCT
1 AAGATGACAGATCTTATCTCTCTGTAATGA-GCGGGGAGTAGATCCAAGATGACAGATCTTATCT
*
125000649 CTCTATATTCGACGGGGAGTAGATCAAAGACATAGCAGATCTGACCTTCATCGGGGCAGATCCAA
65 CTCTATATTCGACGGGGAGTAGATCAAAGACATAGTAGATCTGACCTTCATCGGGGCAGATCCAA
* *
125000714 GATGACAGATCTTATCTCTCCGTAATGGATGGGGAGTAGATCA
130 GATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAGATCA
*
125000757 AAGATGACAGATCTTATCTCTTTGTAATGAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTC
1 AAGATGACAGATCTTATCTCTCTGTAATGAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTC
* * *
125000822 TCTATATTCGACTGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATCGGGGCAGATCCAAG
66 TCTATATTCGACGGGGAGTAGATCAAAGACATAGTAGATCTGACCTTCATCGGGGCAGATCCAAG
* * ** *
125000887 ATGACAGATCTTATATCTCTGTAATGGGCGAAGAGTAGATCT
131 ATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAGATCA
* * *
125000929 AAGATGACAGATCTTATCTCTCTGTAATG-GACAGAGAGTAGATCTAAGATGACAGATCTTATCT
1 AAGATGACAGATCTTATCTCTCTGTAATGAG-CGGGGAGTAGATCCAAGATGACAGATCTTATCT
* * *
125000993 CTCTGTATTCGACGGGGAGTAGATCAAAGACATA-TCAGATCTGACCTTTATCGGGGCAGATCTA
65 CTCTATATTCGACGGGGAGTAGATCAAAGACATAGT-AGATCTGACCTTCATCGGGGCAGATCCA
* * *
125001057 AGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGCAGATCA
129 AGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAGATCA
125001101 AAGA
1 AAGA
125001105 CATAGCAGAT
Statistics
Matches: 314, Mismatches: 31, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
171 2 0.01
172 311 0.99
173 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (172 bp):
AAGATGACAGATCTTATCTCTCTGTAATGAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTC
TCTATATTCGACGGGGAGTAGATCAAAGACATAGTAGATCTGACCTTCATCGGGGCAGATCCAAG
ATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAGATCA
Found at i:125000882 original size:127 final size:126
Alignment explanation
Indices: 125000751--125001271 Score: 467
Period size: 127 Copynumber: 4.1 Consensus size: 126
125000741 GATGGGGAGT
* * *
125000751 AGATCAAAGATGACAGATCTTATCTCTTTGTAATGAGCGGGGAGTAGATCCAAGATGACAGATCT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATG-GCGGAGAGTAGATCCAAGATGACAGATCT
* * *
125000816 TATCTCTCTATATTCGACTGGGAGCAGATCGAAGACATAGTAGATCTGACCTTCATCGGGGC
65 TATCTCTCTGTATTCGACTGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGAGGC
* * *
125000878 AGATCCAAGATGACAGATCTTATATCTCTGTAATGGGCGAAGAGTAGATCTAAGATGACAGATCT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAAT-GGCGGAGAGTAGATCCAAGATGACAGATCT
* * * * * * * *
125000943 TATCTCTCTGTAATGGACAGAGAGTAGATCTAAG--AT-GACAGATCTTATCTCTCTGTATTCGA
65 TATCTCTCTGTATTCGACTGGGAGCAGATCGAAGACATAG-CAGATCTGA-C-CT-T-CA-TCGA
*
125001005 CGGGGAGT
124 ----G-GC
* * * *
125001013 AGATCAAAGACAT-ATCAGATCTGA-C-CT-T-T-AT--CGG-G-GCAGATCTAAGATGACAGAT
1 AGATCCAAG--ATGA-CAGATCTTATCTCTCTGTAATGGCGGAGAGTAGATCCAAGATGACAGAT
* *
125001068 CTTATCTCTCTGTATTCGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGC
63 CTTATCTCTCTGTATTCGACTGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGAGGC
* * * *
125001132 AGATCCAAGATGGCGGATCTTATCCCTCCGTAATGGACGGAGAGTAGATCCAAGATGACAGATCT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGG-CGGAGAGTAGATCCAAGATGACAGATCT
* * * * * * *
125001197 TATCTCTCTGTATTC-AATGGGGAGCAGATCGAAAACATAGAAAATCTGACTTTCATCAAAGC
65 TATCTCTCTGTATTCGACT-GGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGAGGC
125001259 AGATCCAAGATGA
1 AGATCCAAGATGA
125001272 TTTGGCATCT
Statistics
Matches: 315, Mismatches: 49, Indels: 60
0.74 0.12 0.14
Matches are distributed among these distances:
117 9 0.03
118 1 0.00
119 11 0.03
120 1 0.00
121 1 0.00
122 2 0.01
124 5 0.02
125 13 0.04
126 4 0.01
127 220 0.70
128 4 0.01
129 13 0.04
130 4 0.01
132 2 0.01
133 1 0.00
134 2 0.01
135 11 0.03
136 1 0.00
137 10 0.03
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (126 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGCGGAGAGTAGATCCAAGATGACAGATCTT
ATCTCTCTGTATTCGACTGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGAGGC
Found at i:125000927 original size:82 final size:82
Alignment explanation
Indices: 125000796--125001186 Score: 392
Period size: 82 Copynumber: 4.7 Consensus size: 82
125000786 AGCGGGGAGT
* * * * *
125000796 AGATCCAAGATGACAGATCTTATCTCTCTATATTCGACTGGGAGCAGATCGAAGACATAGTAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGACATAGCAGAT
125000861 CTGACCTTCATCGGGGC
66 CTGACCTTCATCGGGGC
* * * * ** *
125000878 AGATCCAAGATGACAGATCTTATATCTCTGTAATGGGCGAAGAGTAGATCTAAG--AT-GACAGA
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGACATAG-CAGA
* * * *
125000940 TCTTATCTCTCTGTAATGGACAGAGAGT
65 TCTGA---C-CT-TCAT---C-G-GGGC
* *
125000968 AGATCTAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGACATATCAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGACATAGCAGAT
*
125001033 CTGACCTTTATCGGGGC
66 CTGACCTTCATCGGGGC
* *
125001050 AGATCTAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGCAGATCAAAGACATAGCAGAT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGACATAGCAGAT
*
125001115 CTGACCTTCATCGAGGC
66 CTGACCTTCATCGGGGC
* * * * * * * *
125001132 AGATCCAAGATGGCGGATCTTATCCCTCCGTAATGGACGGAGAGTAGATCCAAGA
1 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGA
125001187 TGACAGATCT
Statistics
Matches: 253, Mismatches: 42, Indels: 28
0.78 0.13 0.09
Matches are distributed among these distances:
79 1 0.00
80 9 0.04
82 169 0.67
83 2 0.01
84 3 0.01
85 3 0.01
87 3 0.01
88 3 0.01
89 2 0.01
90 48 0.19
92 10 0.04
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (82 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGTAGATCAAAGACATAGCAGAT
CTGACCTTCATCGGGGC
Found at i:125002747 original size:25 final size:27
Alignment explanation
Indices: 125002694--125002750 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 27
125002684 AATTTTACTC
125002694 ATTTTCTTTATTAATATAAATTTTGTT
1 ATTTTCTTTATTAATATAAATTTTGTT
125002721 ATTTT-TTT-TTACATAT-AATTTAT-TT
1 ATTTTCTTTATTA-ATATAAATTT-TGTT
125002746 ATTTT
1 ATTTT
125002751 AAAATCTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
25 15 0.54
26 8 0.29
27 5 0.18
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.67
Consensus pattern (27 bp):
ATTTTCTTTATTAATATAAATTTTGTT
Found at i:125002858 original size:21 final size:22
Alignment explanation
Indices: 125002832--125002956 Score: 77
Period size: 23 Copynumber: 5.7 Consensus size: 22
125002822 TATTTTCCTA
125002832 TATATATTTATATTATATTTTAT
1 TATATA-TTATATTATATTTTAT
*
125002855 TATATAGCATT-TATTAGATTTT-T
1 TATAT---ATTATATTATATTTTAT
*
125002878 TA-CT-TT-TATTATATATTTAT
1 TATATATTATATTATAT-TTTAT
125002898 TACT-TATTATATTAT-TTTTAT
1 TA-TATATTATATTATATTTTAT
* *
125002919 TATATATTAT-GTATATCGTATAT
1 TATATATTATATTATAT--TTTAT
*
125002942 TATCTATTATATTAT
1 TATATATTATATTAT
125002957 TTATGTTTTA
Statistics
Matches: 81, Mismatches: 7, Indels: 27
0.70 0.06 0.23
Matches are distributed among these distances:
18 9 0.11
19 3 0.04
20 7 0.09
21 15 0.19
22 4 0.05
23 27 0.33
24 13 0.16
25 2 0.02
26 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (22 bp):
TATATATTATATTATATTTTAT
Found at i:125002887 original size:18 final size:20
Alignment explanation
Indices: 125002864--125002907 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
125002854 TTATATAGCA
125002864 TTTATTAGAT-TTT-TTACT
1 TTTATTAGATATTTATTACT
*
125002882 TTTATTATATATTTATTACT
1 TTTATTAGATATTTATTACT
125002902 TATTAT
1 T-TTAT
125002908 ATTATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 3 0.14
20 6 0.27
21 4 0.18
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTATTAGATATTTATTACT
Found at i:125002908 original size:18 final size:16
Alignment explanation
Indices: 125002883--125002925 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
125002873 TTTTTTACTT
125002883 TTATTATATATTTATTA
1 TTATTATATATTT-TTA
125002900 CTTATTATATTATTTTTA
1 -TTATTATA-TATTTTTA
125002918 TTA-TATAT
1 TTATTATAT
125002926 TATGTATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.04
16 4 0.17
17 3 0.12
18 11 0.46
19 5 0.21
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATTATATATTTTTA
Found at i:125002944 original size:32 final size:31
Alignment explanation
Indices: 125002839--125002926 Score: 90
Period size: 32 Copynumber: 2.7 Consensus size: 31
125002829 CTATATATAT
*
125002839 TTATATTATATTTTATTATATAGCATTTATTA-GA
1 TTATATTAT-TTTTATTATAT---ATTTATTACTA
* *
125002873 TT-TTTTACTTTTATTATATATTTATTACTTA
1 TTATATTATTTTTATTATATATTTATTAC-TA
125002904 TTATATTATTTTTATTATATATT
1 TTATATTATTTTTATTATATATT
125002927 ATGTATATCG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
29 8 0.17
31 3 0.07
32 29 0.63
33 4 0.09
34 2 0.04
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (31 bp):
TTATATTATTTTTATTATATATTTATTACTA
Found at i:125002960 original size:16 final size:16
Alignment explanation
Indices: 125002884--125002973 Score: 57
Period size: 16 Copynumber: 5.8 Consensus size: 16
125002874 TTTTTACTTT
125002884 TATTATA-TATTTATTAC
1 TATTATATTATTTA-T-C
125002901 TTATTATATTATTT-T-
1 -TATTATATTATTTATC
*
125002916 TATTATA-TA-TTATG
1 TATTATATTATTTATC
**
125002930 TA-TATCGTATATTATC
1 TATTATATTAT-TTATC
*
125002946 TATTATATTATTTATG
1 TATTATATTATTTATC
*
125002962 TTTTATATTATT
1 TATTATATTATT
125002974 CATTTTATTA
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
12 2 0.03
13 6 0.10
14 11 0.19
16 21 0.36
17 7 0.12
18 7 0.12
19 5 0.08
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (16 bp):
TATTATATTATTTATC
Found at i:125002988 original size:16 final size:17
Alignment explanation
Indices: 125002946--125002988 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
125002936 GTATATTATC
*
125002946 TATTATATTATTTATGT
1 TATTATATTATTCATGT
*
125002963 T-TTATATTATTCATTT
1 TATTATATTATTCATGT
125002979 TATTAT-TTAT
1 TATTATATTAT
125002989 AATTTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATATTATTCATGT
Found at i:125004498 original size:44 final size:44
Alignment explanation
Indices: 125004391--125005181 Score: 436
Period size: 44 Copynumber: 18.2 Consensus size: 44
125004381 GAAACAAGAT
125004391 TTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAGA
1 TTGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGA
* * * * * **
125004434 TCTGACA-CTCCTATGCTTATAGCGAAGTAGATCGAAGATTTCAGCA
1 T-TGGCATC-CCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAG-A
* *
125004480 -TGGCATCCCTGTGTTTATAGGGAA-CA-AGTTGAAAATAGCAGA
1 TTGGCATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAGA
* *
125004522 TTTGGCATCCTTGTATTTATAGGGAA-CAGATCGAAGATAGCAGA
1 -TTGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGA
* * * * * **
125004566 TCTGACA-CTCCTGTGCTTACAGTGAAGTAGATCGAAGATTTCAGCA
1 T-TGGCATC-CCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAG-A
* * * *
125004612 -TGACATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATGGTAGA
1 TTGGCATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAGA
*
125004654 TTTGGCATCCCTGTGTTTATAGAGAA-CAGATCGAAGATAGCAGA
1 -TTGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGA
* * * * * **
125004698 TCTGACA-CTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTCAGCA
1 T-TGGCATC-CCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAG-A
*
125004744 -TGGCATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATAGCAGA
1 TTGGCATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAGA
*
125004786 CTTGGCATCCCTGTGTTAATAGGGAA-CA-A---AA-AT--CTA-A
1 -TTGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGC-AGA
** * * ** * **
125004823 ----CATAACTGTGATTACAACGAAGCAGATCAAAGATTTCAGCA
1 TTGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAG-A
* * *
125004864 -TGGCATCCCTGTATTTATA-GGAAACA-AGTTGAAGATAGCAGA
1 TTGGCATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAGA
* *
125004906 TTTGGCATCCCTGTGTTTATAGGGAA-CAAATCGAATATAGCAGA
1 -TTGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGA
* * * * * **
125004950 TCTGACATTCCTGTGATTACAGCGAAGCAGATCGAAGATTTCAGCA
1 T-TGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAG-A
* *
125004996 -TGACATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATAGCAGA
1 TTGGCATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAGA
* * *
125005038 TTTGGCATCCTTGTGTTTATAGGGAA-AAAATCGAAGATAGCAGA
1 -TTGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGA
* * * * ** * * **
125005082 TCTGACATTCCTATGCTTATAGCAAAGTAGATCAAAGATTTCAGCA
1 T-TGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAG-A
* *
125005128 -TGGCATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATAGAAGA
1 TTGGCATCCCTGTGTTTATAGGGAAGCAGA-TCGAAGATAGCAGA
125005170 TTTGGCATCCCT
1 -TTGGCATCCCT
125005182 AAAAATCAAA
Statistics
Matches: 569, Mismatches: 121, Indels: 115
0.71 0.15 0.14
Matches are distributed among these distances:
32 14 0.02
33 2 0.00
34 1 0.00
37 4 0.01
38 3 0.01
39 3 0.01
40 3 0.01
41 1 0.00
42 12 0.02
43 76 0.13
44 367 0.64
45 78 0.14
46 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (44 bp):
TTGGCATCCCTGTGTTTATAGGGAAGCAGATCGAAGATAGCAGA
Found at i:125004624 original size:132 final size:132
Alignment explanation
Indices: 125004387--125005181 Score: 1159
Period size: 132 Copynumber: 6.1 Consensus size: 132
125004377 AAGAGAAACA
*
125004387 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * *
125004452 ATAGCGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAAATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
125004517 GC
131 GC
* *
125004519 AGATTTGGCATCCTTGTATTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * *
125004584 ACAGTGAAGTAGATCGAAGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATG
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
125004649 GT
131 GC
*
125004651 AGATTTGGCATCCCTGTGTTTATAGAGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
125004716 ACAGCGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
125004781 GC
131 GC
* * *
125004783 AGACTTGGCATCCCTGTGTTAATAGGGAACA-A---AA-AT--CTA-A-CAT-A-A---CTGTGA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC-AGATC-TGACACTCCTGTGC
* * * *
125004834 TTACAACGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTATTTATAGGAAACAAGTTGAAGA
64 TTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGA
125004899 TAGC
129 TAGC
* * * *
125004903 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAATATAGCAGATCTGACATTCCTGTGATT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
*
125004968 ACAGCGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
125005033 GC
131 GC
* * * * *
125005035 AGATTTGGCATCCTTGTGTTTATAGGGAAAAAATCGAAGATAGCAGATCTGACATTCCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
* * * *
125005100 ATAGCAAAGTAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
125005165 GA
131 GC
125005167 AGATTTGGCATCCCT
1 AGATTTGGCATCCCT
125005182 AAAAATCAAA
Statistics
Matches: 601, Mismatches: 46, Indels: 32
0.89 0.07 0.05
Matches are distributed among these distances:
120 98 0.16
121 1 0.00
123 1 0.00
124 4 0.01
125 5 0.01
126 2 0.00
127 5 0.01
128 4 0.01
129 1 0.00
131 1 0.00
132 479 0.80
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:125005177 original size:384 final size:384
Alignment explanation
Indices: 125004456--125005181 Score: 1200
Period size: 384 Copynumber: 1.9 Consensus size: 384
125004446 ATGCTTATAG
* * * *
125004456 CGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAAATAGCAG
1 CGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTATTTATAGGAAACAAGTTGAAAATAGCAG
* * *
125004521 ATTTGGCATCCTTGTATTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTAC
66 ATTTGGCATCCCTGTATTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGATTAC
* * * *
125004586 AGTGAAGTAGATCGAAGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATGGT
131 AGCGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
* * *
125004651 AGATTTGGCATCCCTGTGTTTATAGAGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTT
196 AGATTTGGCATCCCTGTGTTTATAGAGAAAAAATCGAAGATAGCAGATCTGACACTCCTATGCTT
* **
125004716 ACAGCGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
261 ACAGCAAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
125004781 GCAGACTTGGCATCCCTGTGTTAATAGGGAACAAAAATCTAACATAACTGTGATTACAA
326 GAAGACTTGGCATCCCTGTGTTAATAGGGAACAAAAATCTAACATAACTGTGATTACAA
*
125004840 CGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTATTTATAGGAAACAAGTTGAAGATAGCAG
1 CGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTATTTATAGGAAACAAGTTGAAAATAGCAG
* * *
125004905 ATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAATATAGCAGATCTGACATTCCTGTGATTAC
66 ATTTGGCATCCCTGTATTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGATTAC
125004970 AGCGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
131 AGCGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
* * *
125005035 AGATTTGGCATCCTTGTGTTTATAGGGAAAAAATCGAAGATAGCAGATCTGACATTCCTATGCTT
196 AGATTTGGCATCCCTGTGTTTATAGAGAAAAAATCGAAGATAGCAGATCTGACACTCCTATGCTT
* *
125005100 ATAGCAAAGTAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
261 ACAGCAAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
*
125005165 GAAGATTTGGCATCCCT
326 GAAGACTTGGCATCCCT
125005182 AAAAATCAAA
Statistics
Matches: 314, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
384 314 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (384 bp):
CGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTATTTATAGGAAACAAGTTGAAAATAGCAG
ATTTGGCATCCCTGTATTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGATTAC
AGCGAAGCAGATCGAAGATTTCAGCATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
AGATTTGGCATCCCTGTGTTTATAGAGAAAAAATCGAAGATAGCAGATCTGACACTCCTATGCTT
ACAGCAAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GAAGACTTGGCATCCCTGTGTTAATAGGGAACAAAAATCTAACATAACTGTGATTACAA
Found at i:125005811 original size:19 final size:19
Alignment explanation
Indices: 125005787--125005848 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
125005777 AATCTTTAAG
125005787 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
125005806 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
125005825 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
125005846 GAT
1 GAT
125005849 CTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:125006222 original size:14 final size:14
Alignment explanation
Indices: 125006205--125006236 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
125006195 TTATATAGTT
125006205 TATTTTCAAATATA
1 TATTTTCAAATATA
*
125006219 TATTTTCATATATA
1 TATTTTCAAATATA
125006233 TATT
1 TATT
125006237 ATATTATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTTTCAAATATA
Found at i:125007720 original size:31 final size:31
Alignment explanation
Indices: 125007685--125007802 Score: 209
Period size: 31 Copynumber: 3.8 Consensus size: 31
125007675 CTTGTCACTT
*
125007685 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
125007716 GTAGCCGAAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
125007747 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
125007778 GTAGCCGAAGCTACAACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
125007803 TGTCATTTGT
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 83 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:125007879 original size:50 final size:51
Alignment explanation
Indices: 125007778--125007906 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
125007768 CACTGATCAG
* *
125007778 GTAGCCGAAGCTA-CAACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATC-ACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
* *
125007829 GTAGCCGAAGGTATCACTTATCACTT-TCACTTGTTCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
* *
125007879 GTAGCCGAAGTTGTCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
125007907 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 46 0.66
51 23 0.33
52 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAGT
Found at i:125012697 original size:19 final size:19
Alignment explanation
Indices: 125012663--125012723 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
125012653 CTGACTTGTT
125012663 TTGAAACAGTTTTAACTTGA
1 TTGAAACA-TTTTAACTTGA
**
125012683 TTGAAA-ATGTTTAACTCAA
1 TTGAAACAT-TTTAACTTGA
125012702 TTGAAACCATTTTAACTTGA
1 TTGAAA-CATTTTAACTTGA
125012722 TT
1 TT
125012724 TTATCATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 1 0.03
19 15 0.44
20 16 0.47
21 2 0.06
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.41
Consensus pattern (19 bp):
TTGAAACATTTTAACTTGA
Found at i:125012790 original size:24 final size:23
Alignment explanation
Indices: 125012753--125012797 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
125012743 GTTCAACTTT
125012753 AACTTTTATTCAAAA-ATATTTG
1 AACTTTTATTCAAAACATATTTG
125012775 AACTTGTTATATCAAAACATATT
1 AACTT-TTAT-TCAAAACATATT
125012798 ATCAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 4 0.20
24 6 0.30
25 5 0.25
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.42
Consensus pattern (23 bp):
AACTTTTATTCAAAACATATTTG
Found at i:125014918 original size:2 final size:2
Alignment explanation
Indices: 125014911--125014948 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
125014901 AACAATTTTA
125014911 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
125014949 GAAAGAAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125018422 original size:27 final size:26
Alignment explanation
Indices: 125018355--125018513 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
125018345 AGGAAGCGTC
125018355 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAA-TATCTGAT
* * * *
125018382 CTAGTGACTTTGCCACATATATATG-T
1 CTGGTGGCTATGCCACA-ATATCTGAT
125018408 CTTGGTGGCTATGCCACAATTATCTGAT
1 C-TGGTGGCTATGCCACAA-TATCTGAT
* * * *
125018436 CTAGTTGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACA-ATATCTGAT
*
125018463 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACAATATCTG-AT
* ** *
125018490 CTGGTGACTCCGTCACAATATCTG
1 CTGGTGGCTATGCCACAATATCTG
125018514 GCAGCCTCGC
Statistics
Matches: 108, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
26 10 0.09
27 94 0.87
28 4 0.04
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTATGCCACAATATCTGAT
Found at i:125018438 original size:54 final size:54
Alignment explanation
Indices: 125018355--125018499 Score: 206
Period size: 54 Copynumber: 2.7 Consensus size: 54
125018345 AGGAAGCGTC
*
125018355 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTTTGCCACATATATATG-T
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATATGTT
*
125018408 CTTGGTGGCTATGCCACAATTATCTGATCTAGTTG-CTCTGCCACATATATCTGTT
1 C-TGGTGGCTATGCCACAATTATCTGATCTAG-TGACTCTGCCACATATATATGTT
* *
125018463 CTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTC
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTC
125018500 CGTCACAATA
Statistics
Matches: 83, Mismatches: 4, Indels: 9
0.86 0.04 0.09
Matches are distributed among these distances:
53 9 0.11
54 70 0.84
55 4 0.05
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATATGTT
Found at i:125019701 original size:2 final size:2
Alignment explanation
Indices: 125019694--125019718 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
125019684 TGAAAATGAA
125019694 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
125019719 AGGCTATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:125019862 original size:14 final size:16
Alignment explanation
Indices: 125019836--125019869 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
125019826 AAATAAAAAT
125019836 ATAAAATATGACAA-A
1 ATAAAATATGACAATA
125019851 ATAAAA-ATGACAATA
1 ATAAAATATGACAATA
125019866 ATAA
1 ATAA
125019870 TGAAAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.21
Consensus pattern (16 bp):
ATAAAATATGACAATA
Found at i:125019870 original size:3 final size:3
Alignment explanation
Indices: 125019862--125020168 Score: 67
Period size: 3 Copynumber: 102.3 Consensus size: 3
125019852 TAAAAATGAC
* * ** * *
125019862 AAT AAT AAT GAA- AAC AAC AAT AAT AAT AAT GCT AAT AGT AGT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *** *
125019907 AGT AAT AGT AAA AAGT AAT AAT AAT AAT AGT AAT GGC AAT AAT AGT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * * * *
125019953 AAT AAT -AT GCT AAAT AAT AAT AAG AA- AA- AAC AAT AGT AAT AGT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
125019996 AAT TAC AA- AAGT GAT AAT AAT AA- AAT AGGAT GAT AAT AAT AAT ACT
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AAT
* * * * * * **
125020042 AAT GAA- ACT AAA AAT AGT AGT AAT AGT AAT AAT AAT AAG ACC AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * ** *
125020087 AAA AAG AAA AAGA AAT AAT AAC ATAT AAAT GGT AAT AAT AAT -AT ATT
1 AAT AAT AAT AA-T AAT AAT AAT A-AT -AAT AAT AAT AAT AAT AAT AAT
* *
125020134 AAT AAG AA- AAT AAT AAT -CT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
125020169 GAAATGGAAT
Statistics
Matches: 216, Mismatches: 69, Indels: 38
0.67 0.21 0.12
Matches are distributed among these distances:
2 18 0.08
3 181 0.84
4 14 0.06
5 3 0.01
ACGTcount: A:0.59, C:0.04, G:0.10, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:125019940 original size:15 final size:15
Alignment explanation
Indices: 125019880--125019959 Score: 76
Period size: 15 Copynumber: 5.5 Consensus size: 15
125019870 TGAAAACAAC
125019880 AATAATAATAAT-GCT
1 AATAATAATAATAG-T
* *
125019895 AATAGTAGTAATAGT
1 AATAATAATAATAGT
*
125019910 AATAGTAA-AA-AGT
1 AATAATAATAATAGT
125019923 AATAATAATAATAGT
1 AATAATAATAATAGT
***
125019938 AATGGCAATAATAGT
1 AATAATAATAATAGT
125019953 AATAATA
1 AATAATA
125019960 TGCTAAATAA
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
13 10 0.19
14 4 0.08
15 37 0.71
16 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (15 bp):
AATAATAATAATAGT
Found at i:125020138 original size:11 final size:11
Alignment explanation
Indices: 125020119--125020168 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
125020109 ATATAAATGG
125020119 TAATAATAATA
1 TAATAATAATA
* *
125020130 TATTAATAAGA
1 TAATAATAATA
* *
125020141 AAATAATAATC
1 TAATAATAATA
125020152 TAATAATAATAA
1 TAATAATAAT-A
125020164 TAATA
1 TAATA
125020169 GAAATGGAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
11 25 0.83
12 5 0.17
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (11 bp):
TAATAATAATA
Found at i:125021784 original size:52 final size:47
Alignment explanation
Indices: 125021702--125021846 Score: 147
Period size: 45 Copynumber: 3.1 Consensus size: 47
125021692 GTTTGTTTTG
* * * *
125021702 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTATTTATTCATAACTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--TA-TT-TGC-TAACTTCA
* *
125021754 ATCTGCTCCACTGCAACTTCAGGGAAATAAG--ATTTGCTATCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATATTTGCTAACTTCA
*
125021799 ATCTGCTCCACTGCAACTTCAGGGAGATAAG--ATTTG-TGACTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATATTTGCTAACTTCA
125021843 ATCT
1 ATCT
125021847 ACTCTGCTGA
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
44 10 0.12
45 42 0.50
46 2 0.02
47 2 0.02
48 1 0.01
52 27 0.32
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (47 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATATTTGCTAACTTCA
Done.