Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 413 of 425
Found at i:125732303 original size:22 final size:22
Alignment explanation
Indices: 125732278--125732320 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
125732268 TTAGCATATT
125732278 ATTTATTAATTAT-TTTCTTTTA
1 ATTTATTAATTATATTT-TTTTA
* *
125732300 ATTTTTTATTTATATTTTTTT
1 ATTTATTAATTATATTTTTTT
125732321 GTAAATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (22 bp):
ATTTATTAATTATATTTTTTTA
Found at i:125732344 original size:12 final size:12
Alignment explanation
Indices: 125732327--125732367 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
125732317 TTTTGTAAAT
125732327 ATATTAAATTAA
1 ATATTAAATTAA
125732339 ATATT-AATATAA
1 ATATTAAAT-TAA
125732351 ATA-TAAATTAA
1 ATATTAAATTAA
125732362 TATATT
1 -ATATT
125732368 TTATTCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
11 7 0.28
12 17 0.68
13 1 0.04
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATATTAAATTAA
Found at i:125732955 original size:85 final size:83
Alignment explanation
Indices: 125732812--125733028 Score: 247
Period size: 85 Copynumber: 2.6 Consensus size: 83
125732802 AAGCAAGGGA
* * *
125732812 CTTGGT-CCCTTGGTTTGGTAAATATTCCTCTTTTAGTCCTCTAAATTTATAAGCTTGTCAGTTA
1 CTTGGTCCCCTTGGTTTGGTAAA-ATTCCTC-TTTAGTCCTCAAAATTTATAAGATTGTCAGCTA
*
125732876 ATTAAATGGTAAAAATAAAC
64 ATTAAATGGAAAAAATAAAC
* * * *
125732896 TTTGGTCCCCTTGATTTGGTAAAATTCCTCATTTAGGTCCTCAAAATTTGTAATATTGTCAGCTA
1 CTTGGTCCCCTTGGTTTGGTAAAATTCCTC-TTTA-GTCCTCAAAATTTATAAGATTGTCAGCTA
* **
125732961 ATTCAATGGAAAAAATGTAC
64 ATTAAATGGAAAAAATAAAC
** *
125732981 CTTGAACCCATTGGTTTGGTAAAATTCCTCTTGTAGTCCTCCAAAATT
1 CTTGGTCCCCTTGGTTTGGTAAAATTCCTCTT-TAGTCCT-CAAAATT
125733029 GTTAACTTGA
Statistics
Matches: 112, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
84 23 0.21
85 89 0.79
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (83 bp):
CTTGGTCCCCTTGGTTTGGTAAAATTCCTCTTTAGTCCTCAAAATTTATAAGATTGTCAGCTAAT
TAAATGGAAAAAATAAAC
Found at i:125735568 original size:14 final size:14
Alignment explanation
Indices: 125735549--125735578 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
125735539 ACTCTAATAA
*
125735549 TTTATTTATTTGTT
1 TTTATTTATTTATT
125735563 TTTATTTATTTATT
1 TTTATTTATTTATT
125735577 TT
1 TT
125735579 ATGAAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (14 bp):
TTTATTTATTTATT
Found at i:125739069 original size:2 final size:2
Alignment explanation
Indices: 125739062--125739087 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
125739052 GGAGCGATTT
125739062 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
125739088 AAGACATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:125739737 original size:17 final size:17
Alignment explanation
Indices: 125739712--125739745 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
125739702 AAATTAAAAA
125739712 AAAATTAGGTT-GATTT
1 AAAATTAGGTTGGATTT
125739728 AAAATATAGGTTGGATTT
1 AAAAT-TAGGTTGGATTT
125739746 GAACATTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 6 0.38
18 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (17 bp):
AAAATTAGGTTGGATTT
Found at i:125743144 original size:14 final size:13
Alignment explanation
Indices: 125743123--125743162 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
125743113 TATTTTATTT
125743123 AATTAAATAATTA
1 AATTAAATAATTA
125743136 AAGTTAAAT-ATTA
1 AA-TTAAATAATTA
125743149 AATTAAATTAATTA
1 AATTAAA-TAATTA
125743163 GTGGTTGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 5 0.21
13 9 0.38
14 10 0.42
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (13 bp):
AATTAAATAATTA
Found at i:125748560 original size:21 final size:21
Alignment explanation
Indices: 125748536--125748580 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
125748526 AACTTTTGAT
125748536 ATTAAATATGATT-ATAGAAAA
1 ATTAAA-ATGATTAATAGAAAA
* *
125748557 ATTAAAATGGTTAATATAAAA
1 ATTAAAATGATTAATAGAAAA
125748578 ATT
1 ATT
125748581 TTAAAAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.36
Consensus pattern (21 bp):
ATTAAAATGATTAATAGAAAA
Found at i:125749462 original size:12 final size:12
Alignment explanation
Indices: 125749445--125749475 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
125749435 CACAAAAAAG
125749445 AAAAAAAAGGAA
1 AAAAAAAAGGAA
*
125749457 AAAAAAAAGGGA
1 AAAAAAAAGGAA
125749469 AAAAAAA
1 AAAAAAA
125749476 CCTTTGTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGGAA
Found at i:125749463 original size:13 final size:13
Alignment explanation
Indices: 125749445--125749475 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
125749435 CACAAAAAAG
125749445 AAAAAAAAGGAAA
1 AAAAAAAAGGAAA
*
125749458 AAAAAAAGGGAAA
1 AAAAAAAAGGAAA
125749471 AAAAA
1 AAAAA
125749476 CCTTTGTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGGAAA
Found at i:125759064 original size:188 final size:188
Alignment explanation
Indices: 125758707--125759080 Score: 570
Period size: 188 Copynumber: 2.0 Consensus size: 188
125758697 TGAGAATTTG
* * * * * ** *
125758707 GGGTGTTCAATCCATCCAGTAAGGAATCTGAAAGGACAATCTTTAGACAACTTAACCTCCGGTTT
1 GGGTATTCAATCCAGCCAGTAAGAAATCTAAAAGGAAAATCTTTAGACAACTTAACCTCCAATTC
* *
125758772 GAGGGATAAAAGTAGAAGTCTATGATCTAACTTGGCCCTCAGGAGGTAAGTGACTGAGCAATACG
66 GAGGGATAAAAGTAGAAGTCTATGATCTAACTTGACCCTCAGGAGGTAAGTGACTGAGCAATACA
*
125758837 GAAAAAGCCTTATCCAAGCATCGTTACCAATTGCCCTATCAAGTCTTTCATAAAGCCC
131 GAAAAAGCCTTATCCAAACATCGTTACCAATTGCCCTATCAAGTCTTTCATAAAGCCC
* * *
125758895 GGGTATTCAATTCAGCCAGTTAGAAATCTAAAAGGAAAATCTTTGGACAACTTAACCTCCAATTC
1 GGGTATTCAATCCAGCCAGTAAGAAATCTAAAAGGAAAATCTTTAGACAACTTAACCTCCAATTC
* *
125758960 GAGGGATAAAAGTAGAGGTCTATGATCTAACTTGACCCTCAGGAGGTAAGTGACTGAGCAATATA
66 GAGGGATAAAAGTAGAAGTCTATGATCTAACTTGACCCTCAGGAGGTAAGTGACTGAGCAATACA
* *
125759025 G-AAAAGGCTTCATCCAAACATCGTTACCAATTTCCCTATCAAGTCTTTCATAAAGC
131 GAAAAAGCCTT-ATCCAAACATCGTTACCAATTGCCCTATCAAGTCTTTCATAAAGC
125759081 TCACCTCGAT
Statistics
Matches: 167, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
187 8 0.05
188 159 0.95
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (188 bp):
GGGTATTCAATCCAGCCAGTAAGAAATCTAAAAGGAAAATCTTTAGACAACTTAACCTCCAATTC
GAGGGATAAAAGTAGAAGTCTATGATCTAACTTGACCCTCAGGAGGTAAGTGACTGAGCAATACA
GAAAAAGCCTTATCCAAACATCGTTACCAATTGCCCTATCAAGTCTTTCATAAAGCCC
Found at i:125761571 original size:47 final size:46
Alignment explanation
Indices: 125761329--125761682 Score: 208
Period size: 47 Copynumber: 7.6 Consensus size: 46
125761319 ATATAGTGCC
* *
125761329 GATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCT
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCTATCATACTA--TG-GCT
* * *
125761379 GATGCATGTCCCAGACATGTCTTACACTAGC-A-CA-ACTCTTAG-T
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATACT-ATGGCT
* * * *
125761422 GATGCGTGTCCCAGACACGTCTTACACTGGCTATC-T-CTGTCGAGACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATACTAT-G-G-CT
* *
125761469 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCAT-CTCTGTGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATACTATG-GCT
* * * *
125761515 GGTACCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGTT
1 GAT-GCATGTCCCAGACAT-GTCTTACACTGGCTATCATACTATGGCT
* ** ** * *
125761563 GATGCATGTCCCAGGCATGTCTTACACTAACCCTCGT-CTGGATGTC-
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATACT--ATGGCT
* * * * * * *
125761609 GATGCCACGTCCCAAACATGGTCTTACGCTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATACTATGGCT
*
125761657 GAAGCATGTCCCAGACATGTCTTACA
1 GATGCATGTCCCAGACATGTCTTACA
125761683 TTGGTGCACA
Statistics
Matches: 236, Mismatches: 47, Indels: 46
0.72 0.14 0.14
Matches are distributed among these distances:
43 30 0.13
44 4 0.02
45 4 0.02
46 33 0.14
47 89 0.38
48 53 0.22
49 18 0.08
50 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCATACTATGGCT
Found at i:125761582 original size:94 final size:92
Alignment explanation
Indices: 125761335--125761682 Score: 298
Period size: 94 Copynumber: 3.7 Consensus size: 92
125761325 TGCCGATGCT
* * *
125761335 ATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTCCCAGACATGT
1 ATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGTCCCAGACATGT
* * *
125761399 CTTACACTAGCA--CAACTCT-TAGTGATGC
63 CTTACACTAGCACTCATCTCTGT-GCGATCC
* * * *
125761427 GTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGA-GACCGATGCATGTCCCAGACATGT
1 ATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGTCCCAGACATGT
* *
125761489 CTTACACTGGCACTCATCTCTGTGCCGGTACC
63 CTTACACTAGCACTCATCTCTGTG-CGAT-CC
** *
125761521 ATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGTTGATGCATGTCCCAGGCATGTCTT
1 ATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACATGTCTT
* * * *
125761586 ACACTAACCCTCGTCT-GGATGTCGATGCC
66 ACACTAGCACTCATCTCTG-TG-CGAT-CC
* * * * * * *
125761615 ACGTCCCAAACATGGTCTTACGCTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGACATGTCTT
1 ATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACATGTCTT
125761680 ACA
66 ACA
125761683 TTGGTGCACA
Statistics
Matches: 207, Mismatches: 36, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
90 33 0.16
91 17 0.08
92 19 0.09
93 5 0.02
94 113 0.55
95 19 0.09
96 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (92 bp):
ATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACATGTCTT
ACACTAGCACTCATCTCTGTGCGATCC
Found at i:125768067 original size:9 final size:8
Alignment explanation
Indices: 125768047--125768125 Score: 70
Period size: 8 Copynumber: 9.4 Consensus size: 8
125768037 CATTTACATT
125768047 AAAA-TTA
1 AAAATTTA
*
125768054 AAATTTTA
1 AAAATTTA
125768062 AAAATTTAA
1 AAAATTT-A
*
125768071 AAAATATA
1 AAAATTTA
125768079 AAAATTTA
1 AAAATTTA
125768087 AAATGATTTTA
1 AAA--A-TTTA
*
125768098 AAAATTCAA
1 AAAATT-TA
*
125768107 AAAATATA
1 AAAATTTA
125768115 AAAATTTA
1 AAAATTTA
125768123 AAA
1 AAA
125768126 TGATCTAATC
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
7 3 0.05
8 33 0.57
9 14 0.24
10 1 0.02
11 7 0.12
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (8 bp):
AAAATTTA
Found at i:125768080 original size:17 final size:17
Alignment explanation
Indices: 125768060--125768125 Score: 87
Period size: 17 Copynumber: 3.8 Consensus size: 17
125768050 ATTAAAATTT
125768060 TAAAAATTTAAAAAATA
1 TAAAAATTTAAAAAATA
* *
125768077 TAAAAATTTAAAATGATTT
1 TAAAAATTTAAAA--AATA
*
125768096 TAAAAATTCAAAAAATA
1 TAAAAATTTAAAAAATA
125768113 TAAAAATTTAAAA
1 TAAAAATTTAAAA
125768126 TGATCTAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
17 27 0.66
19 14 0.34
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (17 bp):
TAAAAATTTAAAAAATA
Found at i:125768098 original size:36 final size:36
Alignment explanation
Indices: 125768056--125768129 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
125768046 TAAAATTAAA
*
125768056 ATTTTAAAAATTTAAAAAATATAAAAATTTAAAATG
1 ATTTTAAAAATTCAAAAAATATAAAAATTTAAAATG
125768092 ATTTTAAAAATTCAAAAAATATAAAAATTTAAAATG
1 ATTTTAAAAATTCAAAAAATATAAAAATTTAAAATG
125768128 AT
1 AT
125768130 CTAATCGCGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (36 bp):
ATTTTAAAAATTCAAAAAATATAAAAATTTAAAATG
Found at i:125778228 original size:64 final size:64
Alignment explanation
Indices: 125778155--125778365 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
125778145 CTGGGCCAGA
*
125778155 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
125778219 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
125778281 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
125778292 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
125778356 GCCCATTTCA
1 GCCCATTTCA
125778366 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:125778367 original size:137 final size:137
Alignment explanation
Indices: 125778121--125778407 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
125778111 TATTGGGCCT
**
125778121 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
125778186 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
125778251 CATATGC
131 CATATGC
125778258 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
125778323 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
125778388 CATATGC
131 CATATGC
125778395 AAGCCCATTTGGG
1 AAGCCCATTTGGG
125778408 GAGACTACTC
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:125778701 original size:26 final size:26
Alignment explanation
Indices: 125778655--125778707 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
125778645 TCAAACATAC
*
125778655 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
125778681 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
125778707 A
1 A
125778708 AAGCTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:125780229 original size:26 final size:26
Alignment explanation
Indices: 125780193--125780302 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
125780183 CATGATATTC
125780193 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
125780219 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
125780245 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
125780271 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
125780297 TTATCA
1 TTATCA
125780303 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:125785511 original size:13 final size:13
Alignment explanation
Indices: 125785493--125785518 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
125785483 GTTCGCACAT
125785493 TTTATAAATTTGA
1 TTTATAAATTTGA
125785506 TTTATAAATTTGA
1 TTTATAAATTTGA
125785519 AATTTCAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TTTATAAATTTGA
Found at i:125789618 original size:42 final size:42
Alignment explanation
Indices: 125789539--125789620 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
125789529 TCGTTTTCTC
** **
125789539 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT
1 GATGCCATAGCCCAACTATGGTCTTACACATAATCACATAAT
* *
125789581 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATA
1 GATGCCATAGCCCAACTATGGTCTTACACATAATCACATA
125789621 TCACATATCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
GATGCCATAGCCCAACTATGGTCTTACACATAATCACATAAT
Found at i:125789656 original size:56 final size:55
Alignment explanation
Indices: 125789572--125789677 Score: 178
Period size: 56 Copynumber: 1.9 Consensus size: 55
125789562 TTACACATCT
*
125789572 TCACATAATGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCACATAATGATGCCATAGCCCAACTATGGTCTTACACG-AATCACATATCACATA
125789628 TCACAT-ATCGATGCCATAGCCCAACTATGGTCTTACACGAATCACATATC
1 TCACATAAT-GATGCCATAGCCCAACTATGGTCTTACACGAATCACATATC
125789678 TCACTAATGC
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
55 13 0.27
56 35 0.73
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (55 bp):
TCACATAATGATGCCATAGCCCAACTATGGTCTTACACGAATCACATATCACATA
Found at i:125789820 original size:31 final size:31
Alignment explanation
Indices: 125789777--125789925 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
125789767 CTTGTCACTT
* *
125789777 GTAGTCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
125789808 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
125789839 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
**
125789870 GTAGTAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
125789901 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
125789926 TGTCATTTGT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:125791924 original size:16 final size:16
Alignment explanation
Indices: 125791903--125791933 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
125791893 ACTAAATTAA
125791903 TAATATTTCCTACTCG
1 TAATATTTCCTACTCG
125791919 TAATATTTCCTACTC
1 TAATATTTCCTACTC
125791934 ATTTGTCGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45
Consensus pattern (16 bp):
TAATATTTCCTACTCG
Found at i:125797298 original size:31 final size:31
Alignment explanation
Indices: 125797260--125797324 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
125797250 CCCCTCTCTC
125797260 TCTCTCTCTTCACATTAGTTCACCCGTGGTT
1 TCTCTCTCTTCACATTAGTTCACCCGTGGTT
*
125797291 TCTCTCTCTTCACATTAGTTCACTCGTGGTT
1 TCTCTCTCTTCACATTAGTTCACCCGTGGTT
125797322 TCT
1 TCT
125797325 ATGTGATGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.12, C:0.31, G:0.12, T:0.45
Consensus pattern (31 bp):
TCTCTCTCTTCACATTAGTTCACCCGTGGTT
Found at i:125802223 original size:58 final size:58
Alignment explanation
Indices: 125802133--125802242 Score: 184
Period size: 58 Copynumber: 1.9 Consensus size: 58
125802123 CTCTACTCGT
125802133 TTTTTTCCAATTTCCTGTACTTCAAAAATAGTTTCAAAAAAATTCCTTTTCTTTTTTC
1 TTTTTTCCAATTTCCTGTACTTCAAAAATAGTTTCAAAAAAATTCCTTTTCTTTTTTC
* * * *
125802191 TTTTTTCCAATTTCTTGTGCTTGAAAAATAGTTTCAAAAAAGTTCCTTTTCT
1 TTTTTTCCAATTTCCTGTACTTCAAAAATAGTTTCAAAAAAATTCCTTTTCT
125802243 GGTGCTTGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.49
Consensus pattern (58 bp):
TTTTTTCCAATTTCCTGTACTTCAAAAATAGTTTCAAAAAAATTCCTTTTCTTTTTTC
Found at i:125802685 original size:10 final size:9
Alignment explanation
Indices: 125802646--125802722 Score: 50
Period size: 9 Copynumber: 8.0 Consensus size: 9
125802636 CTTTTCTTTC
125802646 TTTTTT-TT
1 TTTTTTATT
*
125802654 TTTTTTACT
1 TTTTTTATT
125802663 TTTTTTACTT
1 TTTTTTA-TT
125802673 TTTTTTATGT
1 TTTTTTAT-T
125802683 TTTGTTT-TT
1 TTT-TTTATT
*
125802692 TATGTTTATTT
1 T-TTTTTA-TT
125802703 ATTTATTTATT
1 -TTT-TTTATT
*
125802714 TATTTTATT
1 TTTTTTATT
125802723 ATTATTATTA
Statistics
Matches: 55, Mismatches: 5, Indels: 17
0.71 0.06 0.22
Matches are distributed among these distances:
8 6 0.11
9 20 0.36
10 16 0.29
11 8 0.15
12 5 0.09
ACGTcount: A:0.13, C:0.03, G:0.04, T:0.81
Consensus pattern (9 bp):
TTTTTTATT
Found at i:125802692 original size:25 final size:24
Alignment explanation
Indices: 125802636--125802685 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
125802626 TGTCTGTTTC
*
125802636 CTTTTCTTTCTTTTTTTTTTTTTTA
1 CTTTT-TTTCTTTTTTTTTGTTTTA
125802661 CTTTTTTTACTTTTTTTTATGTTTT
1 CTTTTTTT-CTTTTTTTT-TGTTTT
125802686 GTTTTTTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.64
26 5 0.23
ACGTcount: A:0.06, C:0.10, G:0.02, T:0.82
Consensus pattern (24 bp):
CTTTTTTTCTTTTTTTTTGTTTTA
Found at i:125802724 original size:12 final size:12
Alignment explanation
Indices: 125802697--125802737 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
125802687 TTTTTTATGT
125802697 TTATTTA-TTTA
1 TTATTTATTTTA
125802708 TTTATTTATTTTA
1 -TTATTTATTTTA
125802721 TTA-TTATTATTA
1 TTATTTATT-TTA
125802733 TTATT
1 TTATT
125802738 AACTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 5 0.19
12 16 0.62
13 5 0.19
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TTATTTATTTTA
Found at i:125805490 original size:46 final size:46
Alignment explanation
Indices: 125805423--125805650 Score: 350
Period size: 46 Copynumber: 5.0 Consensus size: 46
125805413 AGTGTGCTCT
125805423 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
125805469 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
125805515 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
125805561 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
125805607 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
125805651 TCATGTCAAA
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.01
46 169 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:125810745 original size:46 final size:46
Alignment explanation
Indices: 125810678--125810859 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
125810668 AGTGTGCTCT
*
125810678 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
125810724 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
125810770 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
125810816 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
125810860 TCATGTCAAA
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 123 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:125811523 original size:34 final size:36
Alignment explanation
Indices: 125811471--125811548 Score: 115
Period size: 34 Copynumber: 2.2 Consensus size: 36
125811461 TTACATTATT
125811471 AATATATATTTTTCTAAATTTTAAATA-TATATTTTA
1 AATAT-TATTTTTCTAAATTTTAAATATTATATTTTA
* *
125811507 AA-ATTATTTTTTTAAATTTTAAATATTATTTTTTA
1 AATATTATTTTTCTAAATTTTAAATATTATATTTTA
125811542 AATATTA
1 AATATTA
125811549 AATATATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
34 20 0.53
35 12 0.32
36 6 0.16
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (36 bp):
AATATTATTTTTCTAAATTTTAAATATTATATTTTA
Found at i:125811573 original size:22 final size:20
Alignment explanation
Indices: 125811505--125811575 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 20
125811495 ATATATATTT
*
125811505 TAAAAT-TATTTTTTTAAATT
1 TAAAATATA-TTTTTTAAATA
*
125811525 TTAAATATTATTTTTTAAATA
1 TAAAATA-TATTTTTTAAATA
*
125811546 TTAAATATATTTTTTAATAATA
1 TAAAATATATTTTTT-A-AATA
125811568 TAAAATAT
1 TAAAATAT
125811576 TTAAATATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
20 13 0.30
21 18 0.41
22 13 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TAAAATATATTTTTTAAATA
Found at i:125811577 original size:20 final size:20
Alignment explanation
Indices: 125811467--125811562 Score: 96
Period size: 21 Copynumber: 5.0 Consensus size: 20
125811457 GGTGTTACAT
125811467 TATTAATATATATTTTTCTAAA
1 TATTAA-ATATATTTTT-TAAA
* *
125811489 TTTTAAATATATATTTTAAA
1 TATTAAATATATTTTTTAAA
125811509 -A-T---TAT-TTTTTTAAA
1 TATTAAATATATTTTTTAAA
*
125811523 TTTTAAATATTATTTTTTAAA
1 TATTAAATA-TATTTTTTAAA
125811544 TATTAAATATATTTTTTAA
1 TATTAAATATATTTTTTAA
125811563 TAATATAAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
14 8 0.13
15 3 0.05
16 1 0.02
18 1 0.02
19 2 0.03
20 15 0.25
21 26 0.43
22 5 0.08
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTAAATATATTTTTTAAA
Found at i:125812208 original size:2 final size:2
Alignment explanation
Indices: 125812201--125812228 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
125812191 CTAATATGAT
125812201 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125812229 GATTTACGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:125812236 original size:228 final size:216
Alignment explanation
Indices: 125811924--125812600 Score: 980
Period size: 222 Copynumber: 3.1 Consensus size: 216
125811914 AAACAAACCA
* * *
125811924 TTAATTTTAATAATGCATACTTTATCC-GGATAAAGTATGTATTAGCAGATTCACTAATATGATT
1 TTAATTTTAATAATGCATACTTTA-CCAAGATGAAGTATGTATTAGTAGATTCACTAATATGATT
* * * *
125811988 ATATATATGTAGAT--ATTTACGCATGTATCACATTACAAAAATAAAAATTTAAATACTTATTCC
65 ATATATATATATATAGATTTACGCATGTATCACATTACAAAAACAAAAATTTAAATACTTATACC
* *
125812051 TAATAAAACATTTATCTTATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTT
130 TAATAAAACATATATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTT
125812116 ATTTCTTATTTAATATTTTAAT
195 ATTTCTTATTTAATATTTTAAT
* **
125812138 TTAATTTTAATAATGCACACTTTACCTCGATGAAGTATGTATTAGTAGATTCACTAATATGATTA
1 TTAATTTTAATAATGCATACTTTACCAAGATGAAGTATGTATTAGTAGATTCACTAATATG----
125812203 TATATATATATATATATATATATATAGATTTACGCATGTATCACATTACAAAAACAAAAATTTAA
62 -------AT-TATATATATATATATAGATTTACGCATGTATCACATTACAAAAACAAAAATTTAA
125812268 ATACTTATACCTAATAAAACATATATCTCATTACAAT-A-A--T-TTTT-CAAATAACATATTGT
119 ATACTTATACCTAATAAAACATATATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGT
*
125812327 TTTATAAATTTATTTCTTATTTAATATTTTAAT
184 TTTATAATTTTATTTCTTATTTAATATTTTAAT
* *
125812360 TTAATTTTAATAATGCATAATTTATCAAGATGAAGTATGTATTAGTAGATTCACTAATATGATTA
1 TTAATTTTAATAATGCATACTTTACCAAGATGAAGTATGTATTAGTAGATTCACTAATATGATTA
125812425 TA-A-ATATATATAGATTTACGCATGTATCACATTACAAAAACAAAAATTTAAATACTTATACCT
66 TATATATATATATAGATTTACGCATGTATCACATTACAAAAACAAAAATTTAAATACTTATACCT
* *
125812488 AATAAAACATGTATCTCATTACAATAATAATAGTTATTTTCTAAATAACATATTGTTTTATAATT
131 AATAAAACATATATCTCATTAC---AATAATAGTTATTTTCCAAATAACATATTGTTTTATAATT
125812553 TTATTTCTTATTTAATATTTTAAT
193 TTATTTCTTATTTAATATTTTAAT
125812577 TTAATTTTAATAATGCATACTTTA
1 TTAATTTTAATAATGCATACTTTA
125812601 TCCGGCAGCA
Statistics
Matches: 419, Mismatches: 20, Indels: 45
0.87 0.04 0.09
Matches are distributed among these distances:
208 81 0.19
209 1 0.00
210 4 0.01
211 5 0.01
212 1 0.00
213 3 0.01
214 54 0.13
215 1 0.00
216 4 0.01
217 69 0.16
222 103 0.25
223 4 0.01
224 1 0.00
225 2 0.00
226 14 0.03
227 1 0.00
228 71 0.17
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (216 bp):
TTAATTTTAATAATGCATACTTTACCAAGATGAAGTATGTATTAGTAGATTCACTAATATGATTA
TATATATATATATAGATTTACGCATGTATCACATTACAAAAACAAAAATTTAAATACTTATACCT
AATAAAACATATATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTA
TTTCTTATTTAATATTTTAAT
Found at i:125812668 original size:27 final size:27
Alignment explanation
Indices: 125812630--125812686 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
125812620 GGTGGAGGGT
* *
125812630 GTTGCGTCTACCT-ATCAAGTGCGACTA
1 GTTGCGCCTACCTGA-CAAGTGCGACAA
*
125812657 GTTGCGCCTACCTGACAAGTTCGACAA
1 GTTGCGCCTACCTGACAAGTGCGACAA
125812684 GTT
1 GTT
125812687 TCGGGTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (27 bp):
GTTGCGCCTACCTGACAAGTGCGACAA
Found at i:125813625 original size:26 final size:26
Alignment explanation
Indices: 125813589--125813639 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
125813579 GAATGGTTAA
125813589 TAACAAATTAAAACA-AATTATAAAAC
1 TAACAAATTAAAACATAATT-TAAAAC
*
125813615 TAACAAATTAAATCATAATTTAAAA
1 TAACAAATTAAAACATAATTTAAAA
125813640 TATTATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (26 bp):
TAACAAATTAAAACATAATTTAAAAC
Found at i:125813646 original size:36 final size:34
Alignment explanation
Indices: 125813605--125813684 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 34
125813595 ATTAAAACAA
*
125813605 ATTATAAAACTAACAAATTAAATCATAATTTAAAAT
1 ATTATAAAACTAA-AAATTAAATAAT-ATTTAAAAT
125813641 ATTATAAAA-T--AAATTAAATAATATTTAAAAT
1 ATTATAAAACTAAAAATTAAATAATATTTAAAAT
125813672 ATTATAAAACTAA
1 ATTATAAAACTAA
125813685 TAACAAAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
31 18 0.45
32 12 0.30
35 1 0.03
36 9 0.22
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (34 bp):
ATTATAAAACTAAAAATTAAATAATATTTAAAAT
Found at i:125813650 original size:10 final size:10
Alignment explanation
Indices: 125813635--125813680 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
125813625 AATCATAATT
125813635 TAAAATATTA
1 TAAAATATTA
125813645 TAAAATAAATTA
1 TAAAAT--ATTA
125813657 -AATAATATT-
1 TAA-AATATTA
125813666 TAAAATATTA
1 TAAAATATTA
125813676 TAAAA
1 TAAAA
125813681 CTAATAACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
9 6 0.19
10 16 0.52
11 2 0.06
12 7 0.23
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
TAAAATATTA
Found at i:125813740 original size:21 final size:21
Alignment explanation
Indices: 125813714--125813779 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
125813704 AAATATTTAA
*
125813714 ATATTTTATATTATTAAAAAT
1 ATATTTAATATTATTAAAAAT
125813735 ATATTTAATATTA--AAAAAT
1 ATATTTAATATTATTAAAAAT
*
125813754 AATATTTAAAATT-TTAAAAAT
1 -ATATTTAATATTATTAAAAAT
125813775 A-ATTT
1 ATATTT
125813780 CAAAATATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 10 0.25
20 12 0.30
21 18 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATATTTAATATTATTAAAAAT
Found at i:125813874 original size:17 final size:18
Alignment explanation
Indices: 125813852--125813895 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
125813842 ATTTAATAAT
125813852 AATAAACAAATAAA-ATA
1 AATAAACAAATAAACATA
*
125813869 AATAAATAAATAAACATA
1 AATAAACAAATAAACATA
125813887 AA-AAACAAA
1 AATAAACAAA
125813896 ACATAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 19 0.79
18 5 0.21
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (18 bp):
AATAAACAAATAAACATA
Found at i:125824106 original size:6 final size:6
Alignment explanation
Indices: 125824097--125824138 Score: 75
Period size: 6 Copynumber: 6.8 Consensus size: 6
125824087 TTATAAGTAT
125824097 AATTAC AATTAC AATTAC AATTAC AATTAC AATTACC AATTA
1 AATTAC AATTAC AATTAC AATTAC AATTAC AATTA-C AATTA
125824139 TTAGTTAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
AATTAC
Found at i:125830377 original size:3 final size:3
Alignment explanation
Indices: 125830369--125830586 Score: 119
Period size: 3 Copynumber: 73.0 Consensus size: 3
125830359 ATATATGTAT
* * * * * *
125830369 ATA ATA ATA ATA GTA AT- ATA ATG GTG ATA ACA A-A A-A ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
125830414 AAA ATA ATA A-A GATA GTA ATA ATG ATA ATA ATA ATA GTA ACGA A-A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
** * * * ** * *
125830459 GATA ATA AGG AGA ATA ACA ATA GTGA A-A ATA GCA ATA A-A ACA AAA
1 -ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
* *
125830504 ATA ATA ATA ATA ATA GTA AGTA A-A ACAA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA A-TA ATA A-TA ATA ATA ATA ATA ATA ATA
125830550 ATA ATA ATA ATAA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
125830587 GTAGCAAATG
Statistics
Matches: 166, Mismatches: 35, Indels: 28
0.72 0.15 0.12
Matches are distributed among these distances:
2 14 0.08
3 139 0.84
4 13 0.08
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.25
Consensus pattern (3 bp):
ATA
Found at i:125830581 original size:31 final size:30
Alignment explanation
Indices: 125830492--125830586 Score: 147
Period size: 31 Copynumber: 3.1 Consensus size: 30
125830482 TGAAAATAGC
*
125830492 AATAAAACAAA-AATAATAATAATAATAGT
1 AATAAAACAAATAATAATAATAATAATAAT
125830521 AAGTAAAACAAATAATAATAATAATAATAAT
1 AA-TAAAACAAATAATAATAATAATAATAAT
*
125830552 AATAATAATAAATAATAATAATAATAATAAT
1 AATAA-AACAAATAATAATAATAATAATAAT
125830583 AATA
1 AATA
125830587 GTAGCAAATG
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
29 2 0.03
30 12 0.20
31 47 0.77
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (30 bp):
AATAAAACAAATAATAATAATAATAATAAT
Found at i:125832129 original size:44 final size:44
Alignment explanation
Indices: 125832074--125832805 Score: 541
Period size: 44 Copynumber: 16.7 Consensus size: 44
125832064 GCTATATTTG
* *
125832074 ATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATTTTCA
1 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
* * * * **
125832118 A-CTTGTTCCCTATAAACACAGGGATGCCATA-CGGA-AATCTTTG
1 ATC-TGTTCCCTATAAGCACAGGGATGCCAAATC-TACTATCTTCA
* * * * *
125832161 ATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCA
1 ATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
* *
125832206 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCA
1 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
* * *
125832250 A-CTTGTTCCCTATAAACACAGGGATGCC--ATGCTGA-AATCTTCG
1 ATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CT-ACTATCTTCA
* * * * * * *
125832293 ATCTGCTTCTCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
1 ATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
* * *
125832338 ATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATTTTCA
1 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
* * *
125832382 A-CTCGTTCCCTATAAGCACAGGGATGCC--ATGCTGA-AATATTCG
1 ATCT-GTTCCCTATAAGCACAGGGATGCCAAAT-CT-ACTATCTTCA
** * * * * * *
125832425 ATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
1 ATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
* *
125832470 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCA
1 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
* * * *
125832514 A-CTTGTTCCCTATAAACATAGGGATGCC--ATGCTGA-AATCTTCG
1 ATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CT-ACTATCTTCA
* * * * * * *
125832557 ATCTGCTTCTCTGTAAGCACAGGAATGTCAGATCTTCTATCTTCG
1 ATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
*
125832602 ATCTGTTCCCTATAA-CACAGGGATGCCAAATCTACTATTTTCA
1 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
* * * *
125832645 A-CTCGTTCCCTATAAGCAAAGGGATGCCATA-CTGA-AATCTTCG
1 ATCT-GTTCCCTATAAGCACAGGGATGCCAAATCT-ACTATCTTCA
* * * * * * * *
125832688 ATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCG
1 ATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
* *
125832733 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATTTTCA
1 ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
*
125832777 A-CTTGTTCCCTATAAACACAGGGATGCCA
1 ATC-TGTTCCCTATAAGCACAGGGATGCCA
125832806 TGCTGAAATC
Statistics
Matches: 541, Mismatches: 109, Indels: 76
0.75 0.15 0.10
Matches are distributed among these distances:
42 8 0.01
43 86 0.16
44 375 0.69
45 66 0.12
46 6 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTATCTTCA
Found at i:125832287 original size:132 final size:132
Alignment explanation
Indices: 125832025--125832862 Score: 1358
Period size: 132 Copynumber: 6.4 Consensus size: 132
125832015 CTCTTGACGG
* * * * * * *
125832025 CTTCAATCTGCTTCACTGCAA-CTCAGGAA-GGCGATATCTGCTATATTTGATCTGTTCCCTATA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTC-AGATCTGCTATCTTCGATCTGTTCCCTATA
* * * *
125832088 AACACAGGGATGCCAAATCTACTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATACGGA
65 AGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGA
125832153 AAT
130 AAT
* * *
125832156 CTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTACTATCTTCAATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
125832221 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAA
66 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAA
125832286 AT
131 AT
*
125832288 CTTCGATCTGCTTCTCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
* * *
125832353 ACACAGGGATGCCAAATCTGCTATTTTCAACTCGTTCCCTATAAGCACAGGGATGCCATGCTGAA
66 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAA
125832418 AT
131 AT
* *
125832420 ATTCGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
*
125832485 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACATAGGGATGCCATGCTGAA
66 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAA
125832550 AT
131 AT
* *
125832552 CTTCGATCTGCTTCTCTGTAAGCACAGGAATGTCAGATCTTCTATCTTCGATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
* * * * *
125832617 -CACAGGGATGCCAAATCTACTATTTTCAACTCGTTCCCTATAAGCAAAGGGATGCCATACTGAA
66 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAA
125832681 AT
131 AT
*
125832683 CTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
125832748 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAA
66 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAA
125832813 AT
131 AT
* * *
125832815 CTTTGATCTGCTTCACTGTAAGCATAGGAATGTCAGATCTGTTATCTT
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTT
125832863 TAGTCTGCTC
Statistics
Matches: 655, Mismatches: 49, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
131 141 0.22
132 512 0.78
133 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (132 bp):
CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAA
AT
Found at i:125833005 original size:68 final size:68
Alignment explanation
Indices: 125832917--125833252 Score: 503
Period size: 68 Copynumber: 5.0 Consensus size: 68
125832907 TCTTCTTCCC
* * ** * * *
125832917 CTGAAACTTTAAGGAAATCTGCTGTAACGTTTAGTCGTTCCAACGCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
*
125832982 CTA
66 CCA
* * *
125832985 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
* *
125833050 TCG
66 CCA
*
125833053 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
*
125833118 CCG
66 CCA
*
125833121 CTGAAAC-TCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
125833185 CCA
66 CCA
* *
125833188 TTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCTATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
125833253 TTATAATTTC
Statistics
Matches: 245, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
67 65 0.27
68 180 0.73
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
CCA
Found at i:125833197 original size:135 final size:136
Alignment explanation
Indices: 125832917--125833252 Score: 505
Period size: 135 Copynumber: 2.5 Consensus size: 136
125832907 TCTTCTTCCC
* * ** * * *
125832917 CTGAAACTTTAAGGAAATCTGCTGTAACGTTTAGTCGTTCCAACGCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
* *
125832982 CTACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAGA
66 CCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGA
* * *
125833047 GGTTCG
131 GATCCA
*
125833053 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
*
125833118 CCGCTGAAAC-TCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAA-AAG
66 CCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCA-GGAAGAAG
125833181 AGATCCA
130 AGATCCA
* *
125833188 TTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCTATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
125833253 TTATAATTTC
Statistics
Matches: 182, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
135 113 0.62
136 69 0.38
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (136 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
CCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGA
GATCCA
Found at i:125833484 original size:61 final size:64
Alignment explanation
Indices: 125833367--125833491 Score: 195
Period size: 61 Copynumber: 2.0 Consensus size: 64
125833357 TCATTTATCC
125833367 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
125833431 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
125833492 TTATTATATG
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 31 0.53
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.34
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:125840359 original size:3 final size:3
Alignment explanation
Indices: 125840351--125840607 Score: 215
Period size: 3 Copynumber: 86.0 Consensus size: 3
125840341 ATATATGTAT
* * * * * *
125840351 ATA ATA ATA ATA GTA AT- ATA ATG GTG ATA ACA A-A A-A ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
125840396 AAA ATA ATA A-A GATA GTA ATA ATG ATA ATA ATA ATA GTA ACGA A-A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
** * * * ** *
125840441 GATA ATA AGG AGA ATA ACA ATA GTGA A-A ATA GCA ATA A-A ACA ATA
1 -ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
*
125840486 ATA ATA ATA ATA ATA ATA GTA AGTA A-A ATAA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA AT-A ATA ATA ATA ATA ATA
125840532 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
125840578 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
125840608 GTAGCAAATG
Statistics
Matches: 207, Mismatches: 33, Indels: 28
0.77 0.12 0.10
Matches are distributed among these distances:
2 14 0.07
3 179 0.86
4 14 0.07
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:125842148 original size:44 final size:44
Alignment explanation
Indices: 125842081--125842862 Score: 606
Period size: 44 Copynumber: 17.8 Consensus size: 44
125842071 GGAAGGCGAT
** * *
125842081 ATCTGCTATCTTTGATCTATTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* * *
125842125 ATCTGCTATTTTCAA-CTTGTTCCCTATAAACACAGGGATGCCAT
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
* ** * * * * *
125842169 A-CGGAAATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCAATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
125842213 ATCTACTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
125842257 ATCTGCTATTTTCAA-CTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * ** *
125842299 ATGCTGAAATCTTCGATCTGCTTCTCTGTAAGCACAGGAATGTTAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * *
125842345 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCTAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
*
125842389 ATCTGCTATTTTCAA-CTCGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCAATCT-GTTCCCTATAAGCACAGGGATGCCAA
** * * * * * * *
125842431 ATGCTGAAATATTCGATCTGCTTCTCTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * *
125842477 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCTAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
*
125842521 ATCTGCTATTTTCAA-CTCGTTCCCTATAAGCACAGGGATGCC--
1 ATCTGCTATCTTCAATCT-GTTCCCTATAAGCACAGGGATGCCAA
** * * ** * * * *
125842563 ATGCTGAAATATTCGATCTGCTTTACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAGCACAGGGATGCCAA
*
125842609 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* **
125842653 ATCTGCTATTTTCAA-CTTGTTCCCTATAAATACAGGGATGCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
125842695 ATGCTGAAATCTTCAATCTGCTTCTCTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAGCACAGGGATGCCAA
* * * *
125842741 ATCTTCTATCTTCGATCTGTTCCCTATAAACACAGGGATGTCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
125842785 ATCTACTATTTTCAA-CTCGTTCCCTATAAGCAAAGGGATGCCAT
1 ATCTGCTATCTTCAATCT-GTTCCCTATAAGCACAGGGATGCCAA
** * * *
125842829 A-CTGAAATCTTCGATCTGCTTCACTGTAAGCACA
1 ATCTGCTATCTTCAATCTG-TTCCCTATAAGCACA
125842863 AGAATGTCAG
Statistics
Matches: 581, Mismatches: 126, Indels: 62
0.76 0.16 0.08
Matches are distributed among these distances:
42 8 0.01
43 71 0.12
44 426 0.73
45 68 0.12
46 8 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:125842877 original size:132 final size:132
Alignment explanation
Indices: 125842046--125842876 Score: 1306
Period size: 132 Copynumber: 6.3 Consensus size: 132
125842036 CTCTTAACAG
* * * * * * *
125842046 CTTCAATCTGCTTCACTGCAA-CTCAGGAA-GGCGATATCTGCTATCTTTGATCTATTCCCTATA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTC-AGATCTGCTATCTTCGATCTGTTCCCTATA
* * *
125842109 AACACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATACGGA
65 AACACAGGGATGCCAAATCTGCTATTTTCAACTCGTTCCCTATAAACACAGGGATGCCATGCTGA
125842174 AAT
130 AAT
* * *
125842177 CTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTACTATCTTCAATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
* *
125842242 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAA
66 ACACAGGGATGCCAAATCTGCTATTTTCAACTCGTTCCCTATAAACACAGGGATGCCATGCTGAA
125842307 AT
131 AT
* *
125842309 CTTCGATCTGCTTCTCTGTAAGCACAGGAATGTTAGATCTGCTATCTTCGATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
* *
125842374 ACACAGGGATGCTAAATCTGCTATTTTCAACTCGTTCCCTATAAGCACAGGGATGCCATGCTGAA
66 ACACAGGGATGCCAAATCTGCTATTTTCAACTCGTTCCCTATAAACACAGGGATGCCATGCTGAA
125842439 AT
131 AT
* *
125842441 ATTCGATCTGCTTCTCTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
* *
125842506 ACACAGGGATGCTAAATCTGCTATTTTCAACTCGTTCCCTATAAGCACAGGGATGCCATGCTGAA
66 ACACAGGGATGCCAAATCTGCTATTTTCAACTCGTTCCCTATAAACACAGGGATGCCATGCTGAA
125842571 AT
131 AT
* *
125842573 ATTCGATCTGCTTTACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
* * *
125842638 GCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAATACAGGGATGCCATGCTGAA
66 ACACAGGGATGCCAAATCTGCTATTTTCAACTCGTTCCCTATAAACACAGGGATGCCATGCTGAA
125842703 AT
131 AT
* * *
125842705 CTTCAATCTGCTTCTCTGTAAGCACAGGAATGTCAGATCTTCTATCTTCGATCTGTTCCCTATAA
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
* * * * *
125842770 ACACAGGGATGTCAAATCTACTATTTTCAACTCGTTCCCTATAAGCAAAGGGATGCCATACTGAA
66 ACACAGGGATGCCAAATCTGCTATTTTCAACTCGTTCCCTATAAACACAGGGATGCCATGCTGAA
125842835 AT
131 AT
*
125842837 CTTCGATCTGCTTCACTGTAAGCACAAGAATGTCAGATCT
1 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCT
125842877 TGCAACTGGG
Statistics
Matches: 651, Mismatches: 47, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
131 18 0.03
132 631 0.97
133 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (132 bp):
CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAA
ACACAGGGATGCCAAATCTGCTATTTTCAACTCGTTCCCTATAAACACAGGGATGCCATGCTGAA
AT
Found at i:125843220 original size:21 final size:22
Alignment explanation
Indices: 125843194--125843246 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
125843184 TTTTTTACTA
*
125843194 TTATTTTGCTATC-CTTTGTTG
1 TTATTTTGCTATCACTTTGATG
* *
125843215 TTA-TTTGCTGTCATTTTGATG
1 TTATTTTGCTATCACTTTGATG
*
125843236 TTGTTTTGCTA
1 TTATTTTGCTA
125843247 CCATTTTGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 8 0.32
21 11 0.44
22 6 0.24
ACGTcount: A:0.11, C:0.11, G:0.17, T:0.60
Consensus pattern (22 bp):
TTATTTTGCTATCACTTTGATG
Found at i:125844747 original size:28 final size:27
Alignment explanation
Indices: 125844692--125844749 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
125844682 TGCCATTAAC
*
125844692 TTTGGGGTTAATAATAATTTTCATAAT
1 TTTGGGGTTAATAATAATTTTCAAAAT
125844719 TTTGGGGTTTAATTAA-AATGTTT-AAAAT
1 TTTGGGG-TTAA-TAATAAT-TTTCAAAAT
125844747 TTT
1 TTT
125844750 TAAGAGGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 7 0.26
28 14 0.52
29 6 0.22
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.50
Consensus pattern (27 bp):
TTTGGGGTTAATAATAATTTTCAAAAT
Found at i:125845116 original size:19 final size:21
Alignment explanation
Indices: 125845076--125845117 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
125845066 GGTATAAAAG
125845076 AAATAATTTTACATATTAATA
1 AAATAATTTTACATATTAATA
*
125845097 AAAT-ATTTTATATA-TAATA
1 AAATAATTTTACATATTAATA
125845116 AA
1 AA
125845118 TTTTAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 9 0.45
21 4 0.20
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
AAATAATTTTACATATTAATA
Found at i:125846687 original size:2 final size:2
Alignment explanation
Indices: 125846680--125846705 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
125846670 CTACTCATTC
125846680 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
125846706 GGGGTTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:125847230 original size:19 final size:20
Alignment explanation
Indices: 125847206--125847243 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
125847196 AAATTTCATA
*
125847206 AAATAAAAGTATA-ATTTTC
1 AAATAAAAATATAGATTTTC
125847225 AAATAAAAATATAGATTTT
1 AAATAAAAATATAGATTTT
125847244 GGGCATGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (20 bp):
AAATAAAAATATAGATTTTC
Found at i:125848035 original size:31 final size:27
Alignment explanation
Indices: 125847970--125848039 Score: 86
Period size: 27 Copynumber: 2.4 Consensus size: 27
125847960 TATAATTAAA
*
125847970 TTATCACTTTGGTATATGTACTTTTTT
1 TTATCAATTTGGTATATGTACTTTTTT
*
125847997 TTATCAATTTGGTATTTGTACTCTATTTT
1 TTATCAATTTGGTATATGTACT-T-TTTT
125848026 GGTTATCAATTTGG
1 --TTATCAATTTGG
125848040 CCATTGTACT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
27 20 0.54
28 1 0.03
29 4 0.11
31 12 0.32
ACGTcount: A:0.20, C:0.10, G:0.14, T:0.56
Consensus pattern (27 bp):
TTATCAATTTGGTATATGTACTTTTTT
Found at i:125848047 original size:31 final size:32
Alignment explanation
Indices: 125847997--125848058 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
125847987 GTACTTTTTT
*
125847997 TTATCAATTTGGTATTTGTACTCT-ATTTTGG
1 TTATCAATTTGGCATTTGTACTCTCATTTTGG
*
125848028 TTATCAATTTGGCCA-TTGTACTTTCATTTTG
1 TTATCAATTTGG-CATTTGTACTCTCATTTTG
125848059 TATACCCCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.19, C:0.13, G:0.15, T:0.53
Consensus pattern (32 bp):
TTATCAATTTGGCATTTGTACTCTCATTTTGG
Found at i:125850421 original size:17 final size:17
Alignment explanation
Indices: 125850378--125850412 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
125850368 CCGAGGTAAG
125850378 TACATATGTAAATAATA
1 TACATATGTAAATAATA
125850395 TACATATGTAAATAATA
1 TACATATGTAAATAATA
125850412 T
1 T
125850413 GTCATTGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (17 bp):
TACATATGTAAATAATA
Found at i:125855596 original size:2 final size:2
Alignment explanation
Indices: 125855591--125855618 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
125855581 TTATTTTCAA
125855591 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
125855619 TTTAATTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125857301 original size:25 final size:25
Alignment explanation
Indices: 125857266--125857316 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
125857256 AATTAAACAA
125857266 ATATTAAATAAATAAAATATTATAT
1 ATATTAAATAAATAAAATATTATAT
* *
125857291 ATATTATATAAATAAAATATTTTAT
1 ATATTAAATAAATAAAATATTATAT
125857316 A
1 A
125857317 ATTTTAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
ATATTAAATAAATAAAATATTATAT
Found at i:125857963 original size:20 final size:23
Alignment explanation
Indices: 125857921--125857967 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
125857911 GTTTTTGGTT
125857921 TTTTGGAGGAGGATTGTTCTTTG
1 TTTTGGAGGAGGATTGTTCTTTG
125857944 TTTTGGAGGAGG-TT-TT-TTTG
1 TTTTGGAGGAGGATTGTTCTTTG
125857964 TTTT
1 TTTT
125857968 TTGGAGGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 8 0.33
21 2 0.08
22 2 0.08
23 12 0.50
ACGTcount: A:0.11, C:0.02, G:0.32, T:0.55
Consensus pattern (23 bp):
TTTTGGAGGAGGATTGTTCTTTG
Found at i:125857979 original size:21 final size:22
Alignment explanation
Indices: 125857894--125857984 Score: 82
Period size: 21 Copynumber: 4.2 Consensus size: 22
125857884 CATTCAAGAC
* * *
125857894 TTTGTTTTTTAG-GGTGGGTTT
1 TTTGTTTTTTGGAGGAGGTTTT
*
125857915 TTGGTTTTTTGGAGGAGGATTGTT
1 TTTGTTTTTTGGAGGAGG-TT-TT
125857939 CTTTG--TTTTGGAGGAGGTTTT
1 -TTTGTTTTTTGGAGGAGGTTTT
*
125857960 TTTGTTTTTTGGAGG-TGTTTT
1 TTTGTTTTTTGGAGGAGGTTTT
125857981 TTTG
1 TTTG
125857985 GAAAAGAAGG
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
20 4 0.07
21 21 0.36
22 15 0.26
23 13 0.22
24 2 0.03
25 3 0.05
ACGTcount: A:0.08, C:0.01, G:0.33, T:0.58
Consensus pattern (22 bp):
TTTGTTTTTTGGAGGAGGTTTT
Found at i:125858332 original size:3 final size:3
Alignment explanation
Indices: 125858318--125858403 Score: 72
Period size: 3 Copynumber: 28.3 Consensus size: 3
125858308 GAGCTTCGTT
* *
125858318 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
125858362 TTTA TCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 -TTA TTA T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
125858404 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 7, Indels: 16
0.75 0.08 0.18
Matches are distributed among these distances:
2 6 0.09
3 52 0.76
4 10 0.15
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:125858356 original size:27 final size:26
Alignment explanation
Indices: 125858317--125858403 Score: 83
Period size: 27 Copynumber: 3.4 Consensus size: 26
125858307 AGAGCTTCGT
125858317 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTA-TATTA
* *
125858344 TTTATATTATTATTATTATT-TATCA
1 TTTATATTATTATTATTTTTATATTA
* *
125858369 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTA-TATTA
125858395 -TTATATTAT
1 TTTATATTAT
125858404 ATATGCCCTC
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
24 11 0.22
25 13 0.27
26 11 0.22
27 14 0.29
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (26 bp):
TTTATATTATTATTATTTTTATATTA
Found at i:125858360 original size:18 final size:18
Alignment explanation
Indices: 125858318--125858407 Score: 101
Period size: 18 Copynumber: 4.7 Consensus size: 18
125858308 GAGCTTCGTT
*
125858318 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
125858338 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
125858356 TTATTATTTATCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
125858377 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
125858395 TTA-TATTATATAT
1 TTATTATT-TATAT
125858408 GCCCTCTCCA
Statistics
Matches: 63, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
17 4 0.06
18 27 0.43
19 9 0.14
20 10 0.16
21 13 0.21
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:125858642 original size:22 final size:23
Alignment explanation
Indices: 125858615--125858671 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
125858605 CTATTACTAT
* *
125858615 TATATATTAGTGTATATTTTTATG
1 TATATA-TAGTATATATTTATATG
*
125858639 TATATATA-TATATATTTATATT
1 TATATATAGTATATATTTATATG
125858661 TATATATAGTA
1 TATATATAGTA
125858672 CTGTTTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 19 0.66
23 4 0.14
24 6 0.21
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (23 bp):
TATATATAGTATATATTTATATG
Found at i:125870772 original size:19 final size:22
Alignment explanation
Indices: 125870730--125870772 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 22
125870720 ACTCGATAGC
*
125870730 AAATACAAAAGTTGTTAATTTA
1 AAATACAAAAGTTGTTAATATA
125870752 AAAT-CAAAA-TT-TTAATATA
1 AAATACAAAAGTTGTTAATATA
125870771 AA
1 AA
125870773 TAGATTAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 9 0.45
20 2 0.10
21 5 0.25
22 4 0.20
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (22 bp):
AAATACAAAAGTTGTTAATATA
Found at i:125871689 original size:18 final size:18
Alignment explanation
Indices: 125871668--125871723 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
125871658 TGGTGGTGGG
125871668 GGTGGTGCCCGCCATGGT
1 GGTGGTGCCCGCCATGGT
** *
125871686 GGTGGTGCCCGCCGCGGC
1 GGTGGTGCCCGCCATGGT
* *
125871704 GGTGATGGCCGCCATGGT
1 GGTGGTGCCCGCCATGGT
125871722 GG
1 GG
125871724 GGCTTAGGCT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.05, C:0.29, G:0.48, T:0.18
Consensus pattern (18 bp):
GGTGGTGCCCGCCATGGT
Found at i:125872418 original size:3 final size:3
Alignment explanation
Indices: 125872410--125872447 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
125872400 TTAGTTTTAA
125872410 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
125872448 AAACCATAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:125873127 original size:20 final size:21
Alignment explanation
Indices: 125873104--125873151 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
125873094 TATAAATTTG
*
125873104 TAAAATATT-ATTAAAATTCA
1 TAAAATATTAAATAAAATTCA
125873124 TAAAAATATTAAATAAAATTCA
1 T-AAAATATTAAATAAAATTCA
125873146 -AAAATA
1 TAAAATA
125873152 AAAATTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 7 0.28
21 8 0.32
22 10 0.40
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (21 bp):
TAAAATATTAAATAAAATTCA
Found at i:125873129 original size:21 final size:21
Alignment explanation
Indices: 125873105--125873149 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
125873095 ATAAATTTGT
*
125873105 AAAATATT-ATTAAAATTCATA
1 AAAATATTAAATAAAATTCA-A
125873126 AAAATATTAAATAAAATTCAA
1 AAAATATTAAATAAAATTCAA
125873147 AAA
1 AAA
125873150 TAAAAATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAATATTAAATAAAATTCAA
Found at i:125873461 original size:21 final size:21
Alignment explanation
Indices: 125873444--125873488 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
125873434 CATATTTATA
125873444 AATTTAAAAAATTAATTTTAG
1 AATTTAAAAAATTAATTTTAG
* * *
125873465 AATTTTAAAAATTAAGTCTAG
1 AATTTAAAAAATTAATTTTAG
125873486 AAT
1 AAT
125873489 GAATTTGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (21 bp):
AATTTAAAAAATTAATTTTAG
Found at i:125874969 original size:18 final size:20
Alignment explanation
Indices: 125874937--125874974 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
125874927 CCATATTTGA
125874937 AATTAAAAAATATATAAAAT
1 AATTAAAAAATATATAAAAT
125874957 AATTAAAAAATATA-AAAA
1 AATTAAAAAATATATAAAA
125874975 GGAAGTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
AATTAAAAAATATATAAAAT
Found at i:125875081 original size:8 final size:8
Alignment explanation
Indices: 125875068--125875127 Score: 50
Period size: 8 Copynumber: 7.2 Consensus size: 8
125875058 TTTTAATTCT
125875068 TTTATATA
1 TTTATATA
125875076 TTTATATA
1 TTTATATA
*
125875084 TTTTTATAAA
1 --TTTATATA
125875094 TTTATA-A
1 TTTATATA
* *
125875101 TTTTAAAAA
1 -TTTATATA
*
125875110 TATATATA
1 TTTATATA
125875118 TTTATATA
1 TTTATATA
125875126 TT
1 TT
125875128 ATAGTTTGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
7 1 0.02
8 33 0.79
9 1 0.02
10 7 0.17
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TTTATATA
Found at i:125875099 original size:16 final size:16
Alignment explanation
Indices: 125875078--125875123 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
125875068 TTTATATATT
125875078 TATATATTTTTATAAA
1 TATATATTTTTATAAA
* * *
125875094 TTTATAATTTTAAAAA
1 TATATATTTTTATAAA
*
125875110 TATATATATTTATA
1 TATATATTTTTATA
125875124 TATTATAGTT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATATTTTTATAAA
Found at i:125878627 original size:13 final size:13
Alignment explanation
Indices: 125878609--125878635 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
125878599 GGTGTCTTCC
125878609 TTCAATTCTTTGT
1 TTCAATTCTTTGT
125878622 TTCAATTCTTTGT
1 TTCAATTCTTTGT
125878635 T
1 T
125878636 AGATCCTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (13 bp):
TTCAATTCTTTGT
Found at i:125880974 original size:16 final size:16
Alignment explanation
Indices: 125880953--125881011 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
125880943 TTAGTTAACA
125880953 ATTTAAAATTAAAAAT
1 ATTTAAAATTAAAAAT
*
125880969 ATTT--AACTAAAAATT
1 ATTTAAAATTAAAAA-T
* *
125880984 AATGAAAA-TAAAAAT
1 ATTTAAAATTAAAAAT
*
125880999 ATTAAAAATTAAA
1 ATTTAAAATTAAA
125881012 TTTAATATCA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 8 0.24
15 10 0.29
16 14 0.41
17 2 0.06
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (16 bp):
ATTTAAAATTAAAAAT
Found at i:125886872 original size:10 final size:10
Alignment explanation
Indices: 125886857--125886882 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
125886847 AGTGTCGAGT
125886857 TAACTTGTGA
1 TAACTTGTGA
125886867 TAACTTGTGA
1 TAACTTGTGA
125886877 TAACTT
1 TAACTT
125886883 ATGGACATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (10 bp):
TAACTTGTGA
Found at i:125891480 original size:215 final size:215
Alignment explanation
Indices: 125891109--125891546 Score: 858
Period size: 215 Copynumber: 2.0 Consensus size: 215
125891099 CAATTGAAAT
125891109 GCTAGAAATGTGAGATTGATAGCTTTTTGGGAAATAAACCATTTTGAATGAAGTTGGATGAGTAA
1 GCTAGAAATGTGAGATTGATAGCTTTTTGGGAAATAAACCATTTTGAATGAAGTTGGATGAGTAA
*
125891174 TTGATAACAATAGGCAGCTTAGATCGGCCAATTCTAAGTTAGATGGCTTGTGCGTCTTTGGATTA
66 TTGATAACAATAGACAGCTTAGATCGGCCAATTCTAAGTTAGATGGCTTGTGCGTCTTTGGATTA
125891239 TATACTTGCTACTTTACTTTCTTTGATAATTAGCTTGCTATGTCCTAACCCTTATTTGCATAGGA
131 TATACTTGCTACTTTACTTTCTTTGATAATTAGCTTGCTATGTCCTAACCCTTATTTGCATAGGA
125891304 TCTTTAATATGCATAAAGTG
196 TCTTTAATATGCATAAAGTG
125891324 GCTAGAAATGTGAGATTGATAGCTTTTTGGGAAATAAACCATTTTGAATGAAGTTGGATGAGTAA
1 GCTAGAAATGTGAGATTGATAGCTTTTTGGGAAATAAACCATTTTGAATGAAGTTGGATGAGTAA
125891389 TTGATAACAATAGACAGCTTAGATCGGCCAATTCTAAGTTAGATGGCTTGTGCGTCTTTGGATTA
66 TTGATAACAATAGACAGCTTAGATCGGCCAATTCTAAGTTAGATGGCTTGTGCGTCTTTGGATTA
125891454 TATACTTGCTACTTTACTTTCTTTGATAATTAGCTTGCTATGTCCTAACCCTTATTTGCATAGGA
131 TATACTTGCTACTTTACTTTCTTTGATAATTAGCTTGCTATGTCCTAACCCTTATTTGCATAGGA
125891519 TCTTTAATATGCATAAAGTG
196 TCTTTAATATGCATAAAGTG
*
125891539 GCTGGAAA
1 GCTAGAAA
125891547 AAAGCATTTC
Statistics
Matches: 221, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
215 221 1.00
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (215 bp):
GCTAGAAATGTGAGATTGATAGCTTTTTGGGAAATAAACCATTTTGAATGAAGTTGGATGAGTAA
TTGATAACAATAGACAGCTTAGATCGGCCAATTCTAAGTTAGATGGCTTGTGCGTCTTTGGATTA
TATACTTGCTACTTTACTTTCTTTGATAATTAGCTTGCTATGTCCTAACCCTTATTTGCATAGGA
TCTTTAATATGCATAAAGTG
Found at i:125892962 original size:83 final size:83
Alignment explanation
Indices: 125892822--125892982 Score: 225
Period size: 83 Copynumber: 1.9 Consensus size: 83
125892812 GTTTAAGTTA
* * *
125892822 GATTATTTTAGGTTTTAGTTGTTTCTAGTTGAACTCACTTCAAACTATGATAATTATGGTTAATC
1 GATTATTTTAGGTTTTAGTTGTTTCAAGTTGAACTCACTTCAAACTATGATAATTATGATTAACC
*
125892887 ATGTGTCCTTTGAGTTTT
66 ATGGGTCCTTTGAGTTTT
* * * * *
125892905 GATTATTTTAGGTTTTAGTTGTTTCAAGTTTAATTCACTTTAAACTAT-AGTAGTTATGATTTAC
1 GATTATTTTAGGTTTTAGTTGTTTCAAGTTGAACTCACTTCAAACTATGA-TAATTATGATTAAC
125892969 CATGGGTCCTTTGA
65 CATGGGTCCTTTGA
125892983 ATTCGAGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
82 1 0.01
83 67 0.99
ACGTcount: A:0.25, C:0.11, G:0.17, T:0.48
Consensus pattern (83 bp):
GATTATTTTAGGTTTTAGTTGTTTCAAGTTGAACTCACTTCAAACTATGATAATTATGATTAACC
ATGGGTCCTTTGAGTTTT
Found at i:125893678 original size:20 final size:21
Alignment explanation
Indices: 125893640--125893679 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
125893630 ATAATAAGTC
*
125893640 TAAAAATTATAATTTATTAAA
1 TAAAAATTATAATTAATTAAA
*
125893661 TAAAAATTAT-CTTAATTAA
1 TAAAAATTATAATTAATTAA
125893680 TATTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TAAAAATTATAATTAATTAAA
Found at i:125894579 original size:2 final size:2
Alignment explanation
Indices: 125894572--125894604 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
125894562 CAATTTTCAT
125894572 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
125894605 TTGGGCACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:125908030 original size:12 final size:12
Alignment explanation
Indices: 125908013--125908048 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
125908003 ATACATGATG
125908013 TGTATATTTTTT
1 TGTATATTTTTT
125908025 TGTATA-TTTTT
1 TGTATATTTTTT
125908036 TGTATATTTTTT
1 TGTATATTTTTT
125908048 T
1 T
125908049 TATGTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.48
12 12 0.52
ACGTcount: A:0.17, C:0.00, G:0.08, T:0.75
Consensus pattern (12 bp):
TGTATATTTTTT
Found at i:125908036 original size:11 final size:11
Alignment explanation
Indices: 125908013--125908047 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
125908003 ATACATGATG
125908013 TGTATATTTTTT
1 TGTATA-TTTTT
125908025 TGTATATTTTT
1 TGTATATTTTT
125908036 TGTATATTTTT
1 TGTATATTTTT
125908047 T
1 T
125908048 TTATGTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (11 bp):
TGTATATTTTT
Found at i:125908040 original size:23 final size:22
Alignment explanation
Indices: 125908013--125908056 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
125908003 ATACATGATG
125908013 TGTATATTTTTTTGTATATTTTT
1 TGTATATTTTTTT-TATATTTTT
*
125908036 TGTATATTTTTTTTATGTTTT
1 TGTATATTTTTTTTATATTTT
125908057 AATATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (22 bp):
TGTATATTTTTTTTATATTTTT
Found at i:125908056 original size:11 final size:11
Alignment explanation
Indices: 125908015--125908056 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
125908005 ACATGATGTG
125908015 TATATTTTTTT
1 TATATTTTTTT
*
125908026 GTATATTTTTTG
1 -TATATTTTTTT
125908038 TATATTTTTTT
1 TATATTTTTTT
*
125908049 TATGTTTT
1 TATATTTT
125908057 AATATATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (11 bp):
TATATTTTTTT
Found at i:125908064 original size:23 final size:23
Alignment explanation
Indices: 125908015--125908065 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
125908005 ACATGATGTG
* *
125908015 TATATTTTTTTGTATATTTTTTG
1 TATATTTTTTTGTATATTTTATA
*
125908038 TATATTTTTTT-TATGTTTTAATA
1 TATATTTTTTTGTATATTTT-ATA
125908061 TATAT
1 TATAT
125908066 AGGTTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (23 bp):
TATATTTTTTTGTATATTTTATA
Found at i:125908475 original size:35 final size:35
Alignment explanation
Indices: 125908430--125908498 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
125908420 GAGTGTGTGA
*
125908430 TGGTGTTGGTGGCAGACAGCATGGGAGAATGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGAG
*
125908465 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
125908499 AGAGGCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.22, C:0.10, G:0.49, T:0.19
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGAG
Found at i:125910109 original size:22 final size:21
Alignment explanation
Indices: 125910071--125910111 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
125910061 TAATTCGTAA
*
125910071 TAAATTATTAATAATATTATT
1 TAAATTATAAATAATATTATT
125910092 TAAATTATAATATAATATTA
1 TAAATTATAA-ATAATATTA
125910112 ATATTCAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TAAATTATAAATAATATTATT
Found at i:125911925 original size:2 final size:2
Alignment explanation
Indices: 125911914--125911944 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
125911904 TTGATGAATC
125911914 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125911945 ATGAAATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:125915441 original size:20 final size:20
Alignment explanation
Indices: 125915418--125915478 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 20
125915408 TTTTTTAACA
125915418 TTTAAAAATATTTTTATATT
1 TTTAAAAATATTTTTATATT
*
125915438 TTT-AATA-ATTTTTA-ATT
1 TTTAAAAATATTTTTATATT
* *
125915455 TTTAAAAATAGTGTTATAATT
1 TTTAAAAATATTTTTAT-ATT
125915476 TTT
1 TTT
125915479 TGAATTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
17 6 0.18
18 10 0.30
19 8 0.24
20 3 0.09
21 6 0.18
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTAAAAATATTTTTATATT
Found at i:125915485 original size:37 final size:36
Alignment explanation
Indices: 125915409--125915499 Score: 96
Period size: 37 Copynumber: 2.5 Consensus size: 36
125915399 TTTAATTATT
* *
125915409 TTTTTAACA-TTTAAAAATATTTTTATATTTTTAATAA
1 TTTTTAA-ATTTTAAAAATAGTGTTATATTTTT-ATAA
*
125915446 TTTTTAATTTTTAAAAATAGTGTTATAATTTTT-TGAA
1 TTTTTAAATTTTAAAAATAGTGTTAT-ATTTTTAT-AA
*
125915483 TTTTAAAATTTTAAAAA
1 TTTTTAAATTTTAAAAA
125915500 AACTAATTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
36 1 0.02
37 39 0.85
38 6 0.13
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (36 bp):
TTTTTAAATTTTAAAAATAGTGTTATATTTTTATAA
Found at i:125916284 original size:13 final size:13
Alignment explanation
Indices: 125916266--125916291 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
125916256 ATTTCAGAAT
125916266 TTAGGTTTTATTG
1 TTAGGTTTTATTG
125916279 TTAGGTTTTATTG
1 TTAGGTTTTATTG
125916292 ACAAATAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (13 bp):
TTAGGTTTTATTG
Found at i:125917025 original size:15 final size:16
Alignment explanation
Indices: 125917005--125917045 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
125916995 TCACTTTTAA
125917005 TATTAAAT-TAATTTT
1 TATTAAATATAATTTT
125917020 TATTAAAAATATAATTTT
1 TATT--AAATATAATTTT
125917038 T-TTAAATA
1 TATTAAATA
125917046 ATATTAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 9 0.39
17 6 0.26
18 8 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTAAATATAATTTT
Found at i:125917034 original size:18 final size:17
Alignment explanation
Indices: 125917009--125917049 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
125916999 TTTTAATATT
125917009 AAAT-TAATTTTTATTAA
1 AAATATAATTTTT-TTAA
125917026 AAATATAATTTTTTTAA
1 AAATATAATTTTTTTAA
125917043 ATAATAT
1 A-AATAT
125917050 TAAATCTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AAATATAATTTTTTTAA
Found at i:125921079 original size:26 final size:26
Alignment explanation
Indices: 125921050--125921102 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
125921040 TACATATGTA
* *
125921050 GAAAATGTTCCGTTCATTTTCTAATT
1 GAAAATGTTCCATTCATTGTCTAATT
*
125921076 GAAAATGTTTCATTCATTGTCTAATT
1 GAAAATGTTCCATTCATTGTCTAATT
125921102 G
1 G
125921103 CACTCTCCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.45
Consensus pattern (26 bp):
GAAAATGTTCCATTCATTGTCTAATT
Found at i:125924128 original size:13 final size:14
Alignment explanation
Indices: 125924099--125924132 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
125924089 AGTTTGTAAC
125924099 AATATAGTATTTTTT
1 AATATAGTA-TTTTT
125924114 AATATAGTA-TTTT
1 AATATAGTATTTTT
125924127 AATATA
1 AATATA
125924133 ATAAAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.53
15 9 0.47
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (14 bp):
AATATAGTATTTTT
Found at i:125924929 original size:24 final size:23
Alignment explanation
Indices: 125924879--125924934 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
125924869 AAATAATGTA
* *
125924879 ATTTCAAATTTAATAATTTTTAAT
1 ATTT-AAATTTAATAATATATAAT
*
125924903 ATTTAAATTTAATAATAATATATT
1 ATTTAAATTTAATAAT-ATATAAT
*
125924927 ATTCAAAT
1 ATTTAAAT
125924935 GTCTATGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (23 bp):
ATTTAAATTTAATAATATATAAT
Found at i:125929322 original size:15 final size:15
Alignment explanation
Indices: 125929304--125929333 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
125929294 CATTATTCTC
*
125929304 ATTACTTTTATTATT
1 ATTAATTTTATTATT
125929319 ATTAATTTTATTATT
1 ATTAATTTTATTATT
125929334 TGACATATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTAATTTTATTATT
Found at i:125931487 original size:19 final size:19
Alignment explanation
Indices: 125931463--125931506 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
125931453 TCCTTTCTTT
*
125931463 TGCATT-CATTTCATGCATC
1 TGCATTGCATTGCAT-CATC
*
125931482 TGCATTGCATTGCATTATC
1 TGCATTGCATTGCATCATC
125931501 TGCATT
1 TGCATT
125931507 AGACTTTCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (19 bp):
TGCATTGCATTGCATCATC
Found at i:125934375 original size:15 final size:15
Alignment explanation
Indices: 125934355--125934402 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
125934345 ACTATTTTAA
125934355 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
125934370 GGTTTAGGGATTATG
1 GGTTTATGGATTATG
* *
125934385 GG-TTATGGTTTAAG
1 GGTTTATGGATTATG
125934399 GGTT
1 GGTT
125934403 GGGGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.44
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:125934375 original size:22 final size:21
Alignment explanation
Indices: 125934350--125934399 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
125934340 GAGTTACTAT
*
125934350 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
125934372 TTTAGGGATTATGGGTTATGG
1 TTTAAGGATTATGGATTATGG
125934393 TTTAAGG
1 TTTAAGG
125934400 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:125934409 original size:35 final size:36
Alignment explanation
Indices: 125934355--125934465 Score: 91
Period size: 35 Copynumber: 3.1 Consensus size: 36
125934345 ACTATTTTAA
* * *
125934355 GGTTTATGGATTATGGGTTTAGGGATTATGGGTTAT
1 GGTTTAAGGGTTAGGGGTTTAGGGATTATGGGTTAT
* *
125934391 GGTTTAAGGGTT-GGGGTTTA-AGACTTAGGGGTTAT
1 GGTTTAAGGGTTAGGGGTTTAGGGA-TTATGGGTTAT
* * ** * * *
125934426 GGGTTAAGTGTTAGGTTTTTAGGGTTTATAGATTAT
1 GGTTTAAGGGTTAGGGGTTTAGGGATTATGGGTTAT
125934462 GGTT
1 GGTT
125934466 ATGATTTAGG
Statistics
Matches: 57, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
34 2 0.04
35 27 0.47
36 27 0.47
37 1 0.02
ACGTcount: A:0.20, C:0.01, G:0.36, T:0.43
Consensus pattern (36 bp):
GGTTTAAGGGTTAGGGGTTTAGGGATTATGGGTTAT
Found at i:125934680 original size:21 final size:21
Alignment explanation
Indices: 125934656--125934697 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
125934646 ATTTATGATA
* * *
125934656 TAGGGTTTTGGGTTTAGGGGT
1 TAGGGGTTGGGGTTTAAGGGT
125934677 TAGGGGTTGGGGTTTAAGGGT
1 TAGGGGTTGGGGTTTAAGGGT
125934698 AAATATAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.50, T:0.38
Consensus pattern (21 bp):
TAGGGGTTGGGGTTTAAGGGT
Found at i:125937835 original size:23 final size:23
Alignment explanation
Indices: 125937802--125938815 Score: 629
Period size: 23 Copynumber: 44.3 Consensus size: 23
125937792 AAATATTGTT
*
125937802 AATTGAGGTG-TTAAACTGCTGCA
1 AATTGAAGTGTTTAAA-TGCTGCA
* * *
125937825 AACTGAAGTGTTTGAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGCA
* *
125937848 AATTGAAGTGTTTGAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGCA
*
125937871 AATTGAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGCA
* * *
125937894 AATTGAAATGCTTAAATGTTGCA
1 AATTGAAGTGTTTAAATGCTGCA
* *
125937917 AATTGAAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTTAAATGCTGCA
** *
125937940 AATTGAAGTGTTTAGTTGCTGGA
1 AATTGAAGTGTTTAAATGCTGCA
* * *
125937963 TATTG-AGATGTTT-TATCGCTG-T
1 AATTGAAG-TGTTTAAAT-GCTGCA
* * * **
125937985 AATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAATGCTGCA
125938008 AATTG-AGATG-TTAAAGTGCTGCA
1 AATTGAAG-TGTTTAAA-TGCTGCA
* *
125938031 AATTGAAGTGCTTAAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGCA
*
125938054 AATTGAAGTG-TTAAAGTGTTGCA
1 AATTGAAGTGTTTAAA-TGCTGCA
** *
125938077 AATTGAAGTGTTTAGTTGCTGGA
1 AATTGAAGTGTTTAAATGCTGCA
* * *
125938100 CATTG-AGATGTTT-TATCGCTG-T
1 AATTGAAG-TGTTTAAAT-GCTGCA
* * * **
125938122 AATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAATGCTGCA
* *
125938145 AATTG-AGATG-CTATAGTGCTGCA
1 AATTGAAG-TGTTTA-AATGCTGCA
* * *
125938168 AATTAAAGTGCTTAAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGCA
125938191 AATTGAAGTG-TTAAAGTGCTGCA
1 AATTGAAGTGTTTAAA-TGCTGCA
* *
125938214 AATTGAAGTGTTTGAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGCA
* *
125938237 AGTTGAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGCA
* * *
125938260 AATTGATGTGCTTAAATGTTGCA
1 AATTGAAGTGTTTAAATGCTGCA
* * *
125938283 AATTGAAGTGTTTAAGTACTACA
1 AATTGAAGTGTTTAAATGCTGCA
** *
125938306 AATTGAAGTGTTTAGTTGCTGGA
1 AATTGAAGTGTTTAAATGCTGCA
* * *
125938329 CATTG-AGATGTTT-TATCGCTG-T
1 AATTGAAG-TGTTTAAAT-GCTGCA
* * * **
125938351 AATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAATGCTGCA
* **
125938374 AATTG-AGATG-TAAAAGTGCTATA
1 AATTGAAG-TGTTTAAA-TGCTGCA
* *
125938397 AATTGAAGTGCTTAAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGCA
125938420 AATTGAAGTG-TTAAAGTGCTGCA
1 AATTGAAGTGTTTAAA-TGCTGCA
*
125938443 AATTGAAGTGTTTGAATGCTGCA
1 AATTGAAGTGTTTAAATGCTGCA
* *
125938466 AATTGAAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTTAAATGCTGCA
** * *
125938489 AATTGAAGTGTTTAGTTACTGGA
1 AATTGAAGTGTTTAAATGCTGCA
* *
125938512 CATTG-AGATGTTT-TAT-C-GCTA
1 AATTGAAG-TGTTTAAATGCTGC-A
* * **
125938533 TAATTGAGGTGTTTAAATGTTGTT
1 -AATTGAAGTGTTTAAATGCTGCA
125938557 AATTG-AGATG-TTAAAGTGCTGCA
1 AATTGAAG-TGTTTAAA-TGCTGCA
125938580 AATTGAAGTG-TTAAAGTGCTGCA
1 AATTGAAGTGTTTAAA-TGCTGCA
* * *
125938603 AACTGAAGTGTTTGAATGCTGTA
1 AATTGAAGTGTTTAAATGCTGCA
* *
125938626 AATTGAAGTGTTTAAATGATGTA
1 AATTGAAGTGTTTAAATGCTGCA
* *
125938649 AATTGAAGTGCTTAAATGTTGCA
1 AATTGAAGTGTTTAAATGCTGCA
* **
125938672 AATTGAAGTGTTTAAGTATTGCA
1 AATTGAAGTGTTTAAATGCTGCA
** *
125938695 AATTGAAGTGTTTAGTTGCTGGA
1 AATTGAAGTGTTTAAATGCTGCA
* *
125938718 CATTG-AGATGTTT-TAT-C-GCTA
1 AATTGAAG-TGTTTAAATGCTGC-A
* * **
125938739 TAATTGAGGTGTTTAAATGTTGTT
1 -AATTGAAGTGTTTAAATGCTGCA
125938763 AATTG-AGATG-TTAAAGTGCTTG-A
1 AATTGAAG-TGTTTAAA-TGC-TGCA
125938786 AATTGAAGTG-TTAAAGTGCTGCA
1 AATTGAAGTGTTTAAA-TGCTGCA
125938809 AATTGAA
1 AATTGAA
125938816 TGTAGCTGTC
Statistics
Matches: 784, Mismatches: 150, Indels: 114
0.75 0.14 0.11
Matches are distributed among these distances:
20 2 0.00
21 4 0.01
22 107 0.14
23 627 0.80
24 42 0.05
25 2 0.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.37
Consensus pattern (23 bp):
AATTGAAGTGTTTAAATGCTGCA
Found at i:125938082 original size:114 final size:115
Alignment explanation
Indices: 125937802--125938299 Score: 287
Period size: 114 Copynumber: 4.3 Consensus size: 115
125937792 AAATATTGTT
* * * * *
125937802 AATTGAGGTG-TTAAACTGCTGCAAACTGAAGTGTTTGAA--TGCTGTAAATTGA-AGTGTTTGA
1 AATTGAAGTGCTTAAA-TACTGCAAATTGAAGTG-TT-AAGTTGCTGCAAATTGAGA-TGTTT-T
* *
125937863 AT-GCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGCTTAAATGTTGCA
61 ATCGCTGTAAATTGAAGTGTATAAATGCTGTAAATTGAAATGCTTAAATGCTGCA
* * * * *
125937917 AATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGATATTGAGATGTTTTATCGC
1 AATTGAAGTGCTTAAATACTGCAAATTGAAGTGTTAAGTTGCTGCAAATTGAGATGTTTTATCGC
* * * *
125937982 TGT-AATTGAGGTGTATAAATGTTGTTAATTGAGATG-TTAAAGTGCTGCA
66 TGTAAATTGAAGTGTATAAATGCTGTAAATTGAAATGCTTAAA-TGCTGCA
* * *
125938031 AATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAG-TGTTGCAAATTGA-A-GTGTTTAGT
1 AATTGAAGTGCTTAAATACTGCAAATTGAAGTGTT-AAGTTGCTGCAAATTGAGATGT-TTTA-T
* * * ** ** * **
125938093 TGCTGGACATTG-AGATGT-TTTATCGCTGT-AATTGAGGTG-TATAAATGTTGTT
63 CGCTGTAAATTGAAG-TGTATAAAT-GCTGTAAATTGAAATGCT-TAAATGCTGCA
* * * * * **
125938145 AATTG-AGATGC-TATAGTGCTGCAAATTAAAGTGCTTAA-ATGCTGTAAATTGA-AGTGTTAAA
1 AATTGAAG-TGCTTA-AATACTGCAAATTGAAGTG-TTAAGTTGCTGCAAATTGAGA-TGTTTTA
* * * * * * *
125938206 GT-GCTGCAAATTGAAGTGTTTGAATGCTGTAAGTTGAAGTGTTTAAATGCTGTA
62 -TCGCTGTAAATTGAAGTGTATAAATGCTGTAAATTGAAATGCTTAAATGCTGCA
* **
125938260 AATTGATGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGT
1 AATTGAAGTGCTTAAATACTGCAAATTGAAGTG-TTAAGT
125938300 ACTACAAATT
Statistics
Matches: 303, Mismatches: 54, Indels: 51
0.74 0.13 0.12
Matches are distributed among these distances:
112 2 0.01
113 15 0.05
114 157 0.52
115 118 0.39
116 11 0.04
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (115 bp):
AATTGAAGTGCTTAAATACTGCAAATTGAAGTGTTAAGTTGCTGCAAATTGAGATGTTTTATCGC
TGTAAATTGAAGTGTATAAATGCTGTAAATTGAAATGCTTAAATGCTGCA
Found at i:125938245 original size:206 final size:206
Alignment explanation
Indices: 125937997--125938815 Score: 991
Period size: 206 Copynumber: 4.0 Consensus size: 206
125937987 TTGAGGTGTA
* * *
125937997 TAAATGTTGTTAATTG-AGATG-TTAAAGTGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGA
1 TAAATGCTGTAAATTGAAG-TGTTTAAA-TGCTGCAAATTGAAGTGCTTAAATGCTGCAAATTGA
* * *
125938060 AGTGTTAAAGTGTTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAAT
64 AGTGTTAAAGTATTGCAAATTGAAGTGTTTAGTTACTGGACATTGAGATGTTTTATCGCTATAAT
* * * *
125938125 TGAGGTGTATAAATGTTGTTAATTGAGATGCTATAGTGCTGCAAATTAAAGTGCTTAAA-TGCTG
129 TGAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTG-TTAAAGTGCTG
*
125938189 TAAATTGAAGTG-T
193 CAAATTGAAGTGCT
* * * * * * *
125938202 TAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAGTTGAAGTGTTTAAATGCTGTAAATTGAT
1 TAAA-TGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGCTGCAAATTGAA
* ** * * **
125938267 GTGCTTAAA-TGTTGCAAATTGAAGTGTTTAAG-TACTACAAATTGA-A-GTGTTTAGTTGCTGG
65 GTG-TTAAAGTATTGCAAATTGAAGTGTTT-AGTTACTGGACATTGAGATGT-TTTA-TCGCTAT
* * * * * ** *
125938328 ACATTGAGATGTTT-TATCGCTG-TAATTGAGGTGTATAAA-TGTTGTTAATTG-AGATGTAAAA
126 A-ATTGAGGTGTTTAAAT-GTTGTTAATTGAGATGT-TAAAGTGCTGCAAATTGAAG-TGTTAAA
**
125938389 GTGCTATAAATTGAAGTGCT
187 GTGCTGCAAATTGAAGTGCT
* *
125938409 TAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGCAAATTGAA
1 TAAATGCTGTAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGTGCTTAAATGCTGCAAATTGAA
* *
125938473 GTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTACTGGACATTGAGATGTTTTATCGCTATAATT
65 GTGTTAAAGTATTGCAAATTGAAGTGTTTAGTTACTGGACATTGAGATGTTTTATCGCTATAATT
125938538 GAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTAAAGTGCTGCA
130 GAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTAAAGTGCTGCA
* *
125938603 AACTGAAGTGTT
195 AATTGAAGTGCT
* * * *
125938615 TGAATGCTGTAAATTGAAGTGTTTAAATGATGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAG
1 TAAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGCTGCAAATTGAAG
* *
125938680 TGTTTAAGTATTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTATAATTG
66 TGTTAAAGTATTGCAAATTGAAGTGTTTAGTTACTGGACATTGAGATGTTTTATCGCTATAATTG
125938745 AGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTTG-AAATTGAAGTGTTAAAGTGCTGCA
131 AGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGC-TGCAAATTGAAGTGTTAAAGTGCTGCA
125938809 AATTGAA
195 AATTGAA
125938816 TGTAGCTGTC
Statistics
Matches: 526, Mismatches: 64, Indels: 47
0.83 0.10 0.07
Matches are distributed among these distances:
204 2 0.00
205 43 0.08
206 431 0.82
207 48 0.09
208 2 0.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (206 bp):
TAAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGCTGCAAATTGAAG
TGTTAAAGTATTGCAAATTGAAGTGTTTAGTTACTGGACATTGAGATGTTTTATCGCTATAATTG
AGGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTAAAGTGCTGCAA
ATTGAAGTGCT
Found at i:125938273 original size:229 final size:229
Alignment explanation
Indices: 125938018--125938498 Score: 793
Period size: 229 Copynumber: 2.1 Consensus size: 229
125938008 AATTGAGATG
* ** *
125938018 TTAAAGTGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGTTGCAAATTGA
1 TTAAA-TGCTGCAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTAAAGTACTACAAATTGA
125938083 AGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAAT
65 AGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAAT
* *
125938148 TGAGATGCT-ATAGTGCTGCAAATTAAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTG
130 TGAGATG-TAAAAGTGCTACAAATTAAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTG
* *
125938212 CAAATTGAAGTGTTTGAATGCTGTAAGTTGAAGTGT
194 CAAATTGAAGTGTTTGAATGCTGCAAATTGAAGTGT
* * * *
125938248 TTAAATGCTGTAAATTGATGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTACAAATTGAA
1 TTAAATGCTGCAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTAAAGTACTACAAATTGAA
125938313 GTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATT
66 GTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATT
* *
125938378 GAGATGTAAAAGTGCTATAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCA
131 GAGATGTAAAAGTGCTACAAATTAAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCA
125938443 AATTGAAGTGTTTGAATGCTGCAAATTGAAGTGT
196 AATTGAAGTGTTTGAATGCTGCAAATTGAAGTGT
* *
125938477 TTAAGTACTGCAAATTGAAGTG
1 TTAAATGCTGCAAATTGAAGTG
125938499 TTTAGTTACT
Statistics
Matches: 232, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
228 1 0.00
229 226 0.97
230 5 0.02
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (229 bp):
TTAAATGCTGCAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTAAAGTACTACAAATTGAA
GTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATT
GAGATGTAAAAGTGCTACAAATTAAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCA
AATTGAAGTGTTTGAATGCTGCAAATTGAAGTGT
Found at i:125938513 original size:183 final size:183
Alignment explanation
Indices: 125937841--125938685 Score: 1053
Period size: 183 Copynumber: 4.6 Consensus size: 183
125937831 AGTGTTTGAA
* * * * *
125937841 TGCTGTAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAATGCT
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* *
125937906 TAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGATATTGAGA
66 TAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGA
125937971 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
131 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
* *
125938024 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTG-TTAAAGTGTTGCAAATTGAAGTGT
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGT
** * * * * * * * ** * *
125938088 TTAGTTGCTGGACATTG-AGATGTTTTA-TCGCTG-TAATTGAGGTGTATAAATGTTGTTA-ATT
65 TTAAATGCTGCAAATTGAAG-TGTTTAAGT-ACTGCAAATTGAAGTGTTTAGTTGCTG-GACATT
* * * * * * *
125938149 GAGATGCTATAGT-GCTGCAAATTAAAGTGCT-TAAATGCTGTAAATTGA-AGTGTTAAAG
127 GAGATGTTTTA-TCGCTG-TAATTGAGGTG-TATAAATGTTGTTAATTGAGA-TGTTAAAG
* * * * *
125938207 TGCTGCAAATTGAAGTGTTTGAATGCTGTAAGTTGAAGTGTTTAAATGCTGTAAATTGATGTGCT
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
* *
125938272 TAAATGTTGCAAATTGAAGTGTTTAAGTACTACAAATTGAAGTGTTTAGTTGCTGGACATTGAGA
66 TAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGA
*
125938337 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTAAAAG
131 TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
** *
125938390 TGCTATAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGT
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGT
* *
125938454 TTGAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTACTGGACATTGAG
65 TTAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAG
* *
125938519 ATGTTTTATCGCTATAATTGAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAG
130 ATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
* * *
125938573 TGCTGCAAATTGAAGTG-TTAAAGTGCTGCAAACTGAAGTGTTTGAATGCTGTAAATTGAAGTGT
1 TGCTGCAAATTGAAGTGCTTAAA-TGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGT
* * * * **
125938637 TTAAATGATGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTA
65 TTAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTA
125938686 AGTATTGCAA
Statistics
Matches: 557, Mismatches: 86, Indels: 38
0.82 0.13 0.06
Matches are distributed among these distances:
182 52 0.09
183 459 0.82
184 46 0.08
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (183 bp):
TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTT
TAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGA
TGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
Found at i:125938539 original size:160 final size:159
Alignment explanation
Indices: 125938228--125938658 Score: 441
Period size: 160 Copynumber: 2.7 Consensus size: 159
125938218 GAAGTGTTTG
* * *
125938228 AATGCTGTAAGTTGAAGTGTTTAAATGCTGTAAATTGATGTGCTTAAA-TGTTGCAAATTGAAGT
1 AATGCTGTAAATTGAAGTG-TTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGT
* * * * * * *
125938292 GTTT-AAGTACTACAAATTGAAGTGTTT-AGTTGCTGGACATTG-AGATGTTTTATCGCTGTAAT
64 GTTTGAA-TGCTGCAAATTGAAGTGTTTAAG-TACTGCAAATTGAAG-TGTTTTATCACTGGAAT
* * *
125938354 TGAGGTGTATAAATGTTGTTAATTGAGATG-TAA
126 TGAGATGTATAAATGCTGATAATTGAGATGTTAA
*
125938387 AAGTGCTATAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGT
1 AA-TGCTGTAAATTGAAGTG-TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGT
*
125938452 GTTTGAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTG-TTTAGTTACTGGACATT
64 GTTTGAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTTA-TCACTGGA-ATT
** * *
125938516 GAGATGT-TTTATCGCT-ATAATTGAGGTGTTTA
127 GAGATGTATAAAT-GCTGATAATTGAGATGTTAA
* * * *
125938548 AATGTTGTTAATTG-AGATGTTAAAGTGCTGCAAATTGAAGTGTTAAAGTGCTGCAAACTGAAGT
1 AATGCTGTAAATTGAAG-TGTTAAA-TGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGT
* * *
125938612 GTTTGAATGCTGTAAATTGAAGTGTTTAAATGA-TGTAAATTGAAGTG
64 GTTTGAATGCTGCAAATTGAAGTGTTTAAGT-ACTGCAAATTGAAGTG
125938659 CTTAAATGTT
Statistics
Matches: 232, Mismatches: 28, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
159 18 0.08
160 192 0.83
161 22 0.09
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (159 bp):
AATGCTGTAAATTGAAGTGTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGT
TTGAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTTATCACTGGAATTGAGA
TGTATAAATGCTGATAATTGAGATGTTAA
Found at i:125938654 original size:137 final size:137
Alignment explanation
Indices: 125937842--125938654 Score: 813
Period size: 137 Copynumber: 5.9 Consensus size: 137
125937832 GTGTTTGAAT
* * * * *
125937842 GCTGTAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAATGCT
1 GCTGT-AATTGAGGTGTTTAAATGTTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGCT
* * ** *
125937906 TAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGATATTGAGA
64 TAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGGAAATTGAGA
125937971 TGTTTTATC
129 TGTTTTATC
* *
125937980 GCTGTAATTGAGGTGTATAAATGTTGTTAATTG-AGATGTTAAAGTGCTGCAAATTGAAGTGCTT
1 GCTGTAATTGAGGTGTTTAAATGTTGTAAATTGAAG-TGTTAAAGTGCTGCAAATTGAAGTGCTT
* * * ** *
125938044 AAATGCTGTAAATTGAAGTGTTAAAGTGTTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGAT
65 AAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGGAAATTGAGAT
125938109 GTTTTATC
130 GTTTTATC
* * * * *
125938117 GCTGTAATTGAGGTGTATAAATGTTGTTAATTG-AGATGCTATAGTGCTGCAAATTAAAGTGCTT
1 GCTGTAATTGAGGTGTTTAAATGTTGTAAATTGAAG-TGTTAAAGTGCTGCAAATTGAAGTGCTT
* * * * *
125938181 AAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAGTTGA-AG
65 AAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGGAAATTGAGA-
*
125938245 TGTTTAAAT-
129 TGTTT-TATC
* * * * * * *
125938254 GCTGTAAATTGATGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTACAAATTGAAGTGTTT
1 GCTGT-AATTGAGGTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGCTT
** * * * * * * * **
125938319 AGTTGCTGGACATTG-AGATGTTTTA-TCGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGAG
65 AAATGCTGCAAATTGAAG-TGTTTAAGT-GCTGCAAATTGAAGTGTTTAAATGCTGGAAATTGAG
***
125938381 ATGTAAAAGT-
128 ATGTTTTA-TC
* * * * *
125938391 GCTATAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTT
1 GCTGT-AATTGAGGTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGCTT
* * ** * *
125938456 GAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTACTGGACATTGAGAT
65 AAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGGAAATTGAGAT
125938521 GTTTTATC
130 GTTTTATC
* *
125938529 GCTATAATTGAGGTGTTTAAATGTTGTTAATTG-AGATGTTAAAGTGCTGCAAATTGAAGTG-TT
1 GCTGTAATTGAGGTGTTTAAATGTTGTAAATTGAAG-TGTTAAAGTGCTGCAAATTGAAGTGCTT
* * * *
125938592 AAAGTGCTGCAAACTGAAGTGTTTGAA-TGCTGTAAATTGAAGTGTTTAAATGATGTAAATTGA
65 AAA-TGCTGCAAATTGAAGTGTTT-AAGTGCTGCAAATTGAAGTGTTTAAATGCTGGAAATTGA
125938655 AGTGCTTAAA
Statistics
Matches: 566, Mismatches: 92, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
136 16 0.03
137 440 0.78
138 108 0.19
139 2 0.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (137 bp):
GCTGTAATTGAGGTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGCTTA
AATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGGAAATTGAGATG
TTTTATC
Found at i:125938745 original size:183 final size:180
Alignment explanation
Indices: 125937841--125938815 Score: 974
Period size: 183 Copynumber: 5.3 Consensus size: 180
125937831 AGTGTTTGAA
* * * * * *
125937841 TGCTGTAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAATGC
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGT
* *
125937905 TTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGATATTGAG
65 TTAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTT--TGGAAATTGAG
125937970 ATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAG
128 ATGTTTTATCGCTGTAATTGAGGTGT-TAAATGTTGTTAATTGAGATGTTAAAG
*
125938024 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGTTGCAAATTGAAGTGTT
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTT
** * * * * * * * * **
125938089 TAGTTGCTGGACATTG-AGATGTTTTA-TCGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGA
66 TAAATGCTGCAAATTGAAG-TGTTTAAGT-ACTGCAAATTGAAGTGT-TTAGT-TTGGAAATTGA
* * * * * * *
125938151 GATGCTATAGT-GCTGCAAATTAAAGTGCTTAAATGCTGTAAATTGA-AGTGTTAAAG
127 GATGTTTTA-TCGCTG-TAATTGAGGTG-TTAAATGTTGTTAATTGAGA-TGTTAAAG
* * * * * *
125938207 TGCTGCAAATTGAAGTGTTTGAATGCTGTAAGTTGAAGTGTTTAAA-TGCTGTAAATTGATGTGC
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGT
* * *
125938271 TTAAATGTTGCAAATTGAAGTGTTTAAGTACTACAAATTGAAGTGTTTAGTTGCTGGACATTGAG
65 TTAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTT--TGGAAATTGAG
*
125938336 ATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTAAAAG
128 ATGTTTTATCGCTGTAATTGAGGTGT-TAAATGTTGTTAATTGAGATGTTAAAG
**
125938390 TGCTATAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTT
1 TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTT
* *
125938455 TGAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTACTGGACATTGAGA
66 TAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTT--TGGAAATTGAGA
*
125938520 TGTTTTATCGCTATAATTGAGGTGTTTAAATGTTGTTAATTGAGATGTTAAAG
129 TGTTTTATCGCTGTAATTGAGGTG-TTAAATGTTGTTAATTGAGATGTTAAAG
* * * *
125938573 TGCTGCAAATTGAAGTG-TTAAAGTGCTGCAAACTGAAGTGTTTGAA-TGCTGTAAATTGAAGTG
1 TGCTGCAAATTGAAGTGCTTAAA-TGCTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTG
* * * * ** *
125938636 TTTAAATGATGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTATTGCAAATTGA
64 TTTAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTT-AGT-TTGGAAATTGA
* * * ** * * *
125938701 -A-GTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCT-ATAATTGAGGTGTTTAAA-
127 GATGT-TTTA-TCGCTGTA-ATTGAGGTGTTAAAT-GTTGTTAATTGAGATG-TTAAAG
* **
125938756 TGTTGTTAATTG-AGATG-TTAAAGTGCT-TGAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
1 TGCTGCAAATTGAAG-TGCTTAAA-TGCTGT-AAATTGAAGTGTTAAAGTGCTGCAAATTGAA
125938816 TGTAGCTGTC
Statistics
Matches: 657, Mismatches: 103, Indels: 64
0.80 0.12 0.08
Matches are distributed among these distances:
181 2 0.00
182 60 0.09
183 532 0.81
184 62 0.09
185 1 0.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (180 bp):
TGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTT
TAAATGCTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTTGGAAATTGAGATG
TTTTATCGCTGTAATTGAGGTGTTAAATGTTGTTAATTGAGATGTTAAAG
Found at i:125938814 original size:91 final size:90
Alignment explanation
Indices: 125938567--125938818 Score: 219
Period size: 91 Copynumber: 2.8 Consensus size: 90
125938557 AATTGAGATG
* ** * *
125938567 TTAAAGTGCTGCAAATTGAAGTGTTAAAGTGCTGCAAACTGAAGTGTTTGAA--TGCTGTAAATT
1 TTAAA-TGTTGCAAATTGAAGTGTTAAAGTATTGCAAATTGAAGTG-TT-AAGTTGCTGCAAATT
* * *
125938630 GAAGTGTTTAAAT-GATGTAAATTGAAGTGC
63 GAA-TGTTT-TATCGCTAT-AATTGAAGTGC
* * * *
125938660 TTAAATGTTGCAAATTGAAGTGTTTAAGTATTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAG
1 TTAAATGTTGCAAATTGAAGTGTTAAAGTATTGCAAATTGAAGTGTTAAGTTGCTGCAAATTGA-
* *
125938725 ATGTTTTATCGCTATAATTGAGGTGT
65 ATGTTTTATCGCTATAATTGAAGTGC
** *
125938751 TTAAATGTTGTTAATTG-AGATGTTAAAGTGCTTG-AAATTGAAGTGTTAAAG-TGCTGCAAATT
1 TTAAATGTTGCAAATTGAAG-TGTTAAAGT-ATTGCAAATTGAAGTGTT-AAGTTGCTGCAAATT
125938813 GAATGT
63 GAATGT
125938819 AGCTGTCTTA
Statistics
Matches: 132, Mismatches: 20, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
90 7 0.05
91 60 0.45
92 59 0.45
93 6 0.05
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (90 bp):
TTAAATGTTGCAAATTGAAGTGTTAAAGTATTGCAAATTGAAGTGTTAAGTTGCTGCAAATTGAA
TGTTTTATCGCTATAATTGAAGTGC
Found at i:125939175 original size:42 final size:43
Alignment explanation
Indices: 125939085--125939180 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 43
125939075 ATAATTTTTT
*
125939085 TTAAAGGTTATATTCTTTAGCGGCGTTTGTCGAAAAAGCGCCG
1 TTAAAGGTTATATTCTATAGCGGCGTTTGTCGAAAAAGCGCCG
* * * * **
125939128 CTAAAGGTCTAT-TT-TATAGCGGCGTTTGTGGGAAAAGTGTTG
1 TTAAAGGT-TATATTCTATAGCGGCGTTTGTCGAAAAAGCGCCG
125939170 TTAAAGGTTAT
1 TTAAAGGTTAT
125939181 GACTTTTAGC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
41 3 0.07
42 29 0.66
43 9 0.20
44 3 0.07
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.35
Consensus pattern (43 bp):
TTAAAGGTTATATTCTATAGCGGCGTTTGTCGAAAAAGCGCCG
Found at i:125939192 original size:43 final size:41
Alignment explanation
Indices: 125939085--125939194 Score: 105
Period size: 42 Copynumber: 2.6 Consensus size: 41
125939075 ATAATTTTTT
125939085 TTAAAGGTTATATTCTTTAGCGGCGTTTGTCGAAAAAGCGCCG
1 TTAAAGGTTATA-T-TTTAGCGGCGTTTGTCGAAAAAGCGCCG
* * * * **
125939128 CTAAAGGTCTAT-TTTATAGCGGCGTTTGTGGGAAAAGTGTTG
1 TTAAAGGT-TATATTT-TAGCGGCGTTTGTCGAAAAAGCGCCG
125939170 TTAAAGGTTATGACTTTTAGCGGCG
1 TTAAAGGTTAT-A-TTTTAGCGGCG
125939195 CTTTCCCAAC
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
41 5 0.09
42 29 0.53
43 15 0.27
44 6 0.11
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.35
Consensus pattern (41 bp):
TTAAAGGTTATATTTTAGCGGCGTTTGTCGAAAAAGCGCCG
Found at i:125939272 original size:43 final size:43
Alignment explanation
Indices: 125939179--125939279 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 43
125939169 GTTAAAGGTT
* * * *
125939179 ATGACTTTTAGCGGCGCTTTCCCAACAAATGCCGCTAAAAGCC
1 ATGACTTTTAGCTGTGCTTTCCCAACAAACGCCGCTAAAAACC
* *
125939222 ATAACTTTTAGCTGTGCTTTTCCC-ACAAACGCCGCTAAAAATC
1 ATGACTTTTAGCTGTGC-TTTCCCAACAAACGCCGCTAAAAACC
*
125939265 ATGACTTTTCGCTGT
1 ATGACTTTTAGCTGT
125939280 ATTTTTTTGA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 43 0.88
44 6 0.12
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (43 bp):
ATGACTTTTAGCTGTGCTTTCCCAACAAACGCCGCTAAAAACC
Done.