Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 414 of 425
Found at i:125940058 original size:3 final size:3
Alignment explanation
Indices: 125940046--125940076 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
125940036 CTAAAAAAAA
*
125940046 AAG AAA AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
125940077 TCATGGAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:125941880 original size:66 final size:66
Alignment explanation
Indices: 125941764--125941892 Score: 213
Period size: 66 Copynumber: 2.0 Consensus size: 66
125941754 ATTCATATAT
* * *
125941764 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCAGAGCATCCTAATCATTTGAC
125941829 A
66 A
* *
125941830 CATTCATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATTAGAGCATCCTAATCATTTG
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCAGAGCATCCTAATCATTTG
125941893 GCATAAGTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCAGAGCATCCTAATCATTTGAC
A
Found at i:125942031 original size:45 final size:44
Alignment explanation
Indices: 125941917--125942130 Score: 168
Period size: 44 Copynumber: 4.8 Consensus size: 44
125941907 AACTGATTTT
* *
125941917 ACAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGGTG
1 ACAGATCTTATCCCCTTAAGCAGTAGGGAAACAGATCGAAGTTG
* * * * * *
125941961 ACA-AGCCTTAACCCCTTAAGTAGTAGGGTAACAG-GCTGAAGATTT
1 ACAGA-TCTTATCCCCTTAAGCAGTAGGGAAACAGATC-GAAG-TTG
**
125942006 ACAGATCTTATCCCCTTAAGCAGTAGGGAAACAGATCGAAGGCG
1 ACAGATCTTATCCCCTTAAGCAGTAGGGAAACAGATCGAAGTTG
* * * * * * *
125942050 AC-GAGTTTTAACCCGTTAAGCAGTAGGGTAACA-AGCTAAAGTTC
1 ACAGA-TCTTATCCCCTTAAGCAGTAGGGAAACAGATC-GAAGTTG
* *
125942094 ATAGATCTTATCACCC-TAAGCAGTAGGGAAGCAGATC
1 ACAGATCTTATC-CCCTTAAGCAGTAGGGAAACAGATC
125942131 AAAAGACGGC
Statistics
Matches: 128, Mismatches: 32, Indels: 19
0.72 0.18 0.11
Matches are distributed among these distances:
43 6 0.05
44 81 0.63
45 39 0.30
46 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.21
Consensus pattern (44 bp):
ACAGATCTTATCCCCTTAAGCAGTAGGGAAACAGATCGAAGTTG
Found at i:125942069 original size:89 final size:87
Alignment explanation
Indices: 125941914--125942130 Score: 299
Period size: 89 Copynumber: 2.4 Consensus size: 87
125941904 TGAAACTGAT
*
125941914 TTTACAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAACCCCTTA
1 TTTACAGATCTTAT-CCCCTAAGCAGTAGGGAAACAGATCGAAGGCGACAAGCCTTAACCCCTTA
* * *
125941979 AGTAGTAGGGTAACAGGCTGAAG
65 AGCAGTAGGGTAACAAGCTAAAG
* ** *
125942002 ATTTACAGATCTTATCCCCTTAAGCAGTAGGGAAACAGATCGAAGGCGACGAGTTTTAACCCGTT
1 -TTTACAGATCTTATCCCC-TAAGCAGTAGGGAAACAGATCGAAGGCGACAAGCCTTAACCCCTT
125942067 AAGCAGTAGGGTAACAAGCTAAAG
64 AAGCAGTAGGGTAACAAGCTAAAG
* * *
125942091 TTCATAGATCTTATCACCCTAAGCAGTAGGGAAGCAGATC
1 TTTACAGATCTTATC-CCCTAAGCAGTAGGGAAACAGATC
125942131 AAAAGACGGC
Statistics
Matches: 115, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
88 37 0.32
89 78 0.68
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (87 bp):
TTTACAGATCTTATCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGACAAGCCTTAACCCCTTAA
GCAGTAGGGTAACAAGCTAAAG
Found at i:125942254 original size:45 final size:43
Alignment explanation
Indices: 125942190--125942343 Score: 148
Period size: 43 Copynumber: 3.5 Consensus size: 43
125942180 ACCACTAAGC
* * * * * *
125942190 CTTAATCCCCTAAGTAGTAGGGTAATAGGTTGAAGATCTACAGAT
1 CTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGAT-GA-AGAT
*
125942235 CTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATGAT
1 CTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * **
125942278 CTT-ATCACCCTAAGCAGTAGGGAAACAGATCAAAGAAGATGGGC
1 CTTAATC-CCCTAAGCAGTAGGGAAACAGATCGAAGATGA-AGAT
*
125942322 CTTAACCCCCTAAGCAGTAGGG
1 CTTAATCCCCTAAGCAGTAGGG
125942344 TAATAGGCTG
Statistics
Matches: 93, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 3 0.03
43 36 0.39
44 20 0.22
45 34 0.37
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.21
Consensus pattern (43 bp):
CTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
Found at i:125942639 original size:87 final size:88
Alignment explanation
Indices: 125942451--125942658 Score: 251
Period size: 87 Copynumber: 2.4 Consensus size: 88
125942441 CAAACCACCA
* * * * *
125942451 AGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATATTATTGCCCTAAGAAGT
1 AGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTCAAATTTACAGACATTAATGCCCTAAGAAGT
* * *
125942516 AGGGAAACAGATCGAATATGATG
66 AGGGAAACAGATCGAAGACGACG
* * * * *
125942539 GGC-TAAACCCCCTAAGCGGTAGGGTAACAAGC-CAAATTTACAGACCTTGAAT-CCCTAAGCAG
1 AGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTCAAATTTACAGACATT-AATGCCCTAAGAAG
*
125942601 TAGGGAAACAGATCGAAGGCGACG
65 TAGGGAAACAGATCGAAGACGACG
*
125942625 AGCTTTAACTCCCTAAGCAGTAGGGTAACAAGCT
1 AGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCT
125942659 GACGTTCATA
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
86 42 0.42
87 55 0.56
88 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (88 bp):
AGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCTCAAATTTACAGACATTAATGCCCTAAGAAGT
AGGGAAACAGATCGAAGACGACG
Found at i:125945945 original size:9 final size:9
Alignment explanation
Indices: 125945933--125945959 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
125945923 AATAATAATG
125945933 GAAACAAAA
1 GAAACAAAA
125945942 GAAACAAAA
1 GAAACAAAA
125945951 GAAACAAAA
1 GAAACAAAA
125945960 AAAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.11, G:0.11, T:0.00
Consensus pattern (9 bp):
GAAACAAAA
Found at i:125946140 original size:2 final size:2
Alignment explanation
Indices: 125946133--125946161 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
125946123 TATGGAGTAT
125946133 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
125946162 TAGAAGGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:125961254 original size:51 final size:52
Alignment explanation
Indices: 125961199--125961307 Score: 184
Period size: 51 Copynumber: 2.1 Consensus size: 52
125961189 TGATACAAAT
125961199 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
* * *
125961250 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
125961302 TGATAA
1 TGATAA
125961308 GAATTCATGT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 31 0.57
52 23 0.43
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:125961268 original size:26 final size:26
Alignment explanation
Indices: 125961199--125961307 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
125961189 TGATACAAAT
*
125961199 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
125961225 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
125961250 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
125961276 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
125961302 TGATAA
1 TGATAA
125961308 GAATTCATGT
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
25 25 0.31
26 56 0.69
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:125962816 original size:26 final size:26
Alignment explanation
Indices: 125962787--125962839 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
125962777 TTTACAGTTT
125962787 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
125962813 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
125962839 T
1 T
125962840 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:125967049 original size:51 final size:52
Alignment explanation
Indices: 125966994--125967102 Score: 184
Period size: 51 Copynumber: 2.1 Consensus size: 52
125966984 TGATACAAAT
125966994 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
* * *
125967045 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
125967097 TGATAA
1 TGATAA
125967103 GAATTCATGT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 31 0.57
52 23 0.43
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:125967063 original size:26 final size:26
Alignment explanation
Indices: 125966994--125967102 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
125966984 TGATACAAAT
*
125966994 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
125967020 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
125967045 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
125967071 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
125967097 TGATAA
1 TGATAA
125967103 GAATTCATGT
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
25 25 0.31
26 56 0.69
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:125970711 original size:12 final size:12
Alignment explanation
Indices: 125970691--125970726 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
125970681 TGGGATATGC
*
125970691 AATGTATGAATG
1 AATGCATGAATG
125970703 AATGCATGAATG
1 AATGCATGAATG
125970715 AATGCATGAATG
1 AATGCATGAATG
125970727 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:125972762 original size:33 final size:33
Alignment explanation
Indices: 125972700--125972762 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
125972690 ACACAATATG
* * *
125972700 GTATTTAAAATATATATATATGTATATATAATA
1 GTATTTAAAATATATACATAAGTAAATATAATA
125972733 GTATTTAAGAATATATACATAAG-AAATATA
1 GTATTTAA-AATATATACATAAGTAAATATA
125972763 TAACTAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 14 0.54
34 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (33 bp):
GTATTTAAAATATATACATAAGTAAATATAATA
Found at i:125972923 original size:12 final size:13
Alignment explanation
Indices: 125972906--125972935 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
125972896 CGCCGCTCGT
125972906 CACCGGCGCCGG-
1 CACCGGCGCCGGC
125972918 CACCGGCGCCGGC
1 CACCGGCGCCGGC
125972931 CACCG
1 CACCG
125972936 CCCACGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.10, C:0.53, G:0.37, T:0.00
Consensus pattern (13 bp):
CACCGGCGCCGGC
Found at i:125976403 original size:26 final size:26
Alignment explanation
Indices: 125976367--125976476 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
125976357 CATGTAATTC
125976367 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
125976393 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
125976419 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
125976445 TTGTCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
125976471 TTATCA
1 TTATCA
125976477 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:125981883 original size:12 final size:13
Alignment explanation
Indices: 125981831--125981883 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 13
125981821 TTAATATTAC
125981831 TGTATA-ATGTTA
1 TGTATATATGTTA
125981843 T-TATATATG-TA
1 TGTATATATGTTA
* *
125981854 TATATATATGTGTG
1 TGTATATATGT-TA
125981868 TGTATATAT-TTA
1 TGTATATATGTTA
125981880 TGTA
1 TGTA
125981884 GTTTTATCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
11 7 0.21
12 17 0.50
13 1 0.03
14 9 0.26
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (13 bp):
TGTATATATGTTA
Found at i:125982097 original size:23 final size:22
Alignment explanation
Indices: 125982070--125982117 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
125982060 ATGTTTTGTG
*
125982070 TATATA-TTTCTAATACTATATAT
1 TATATACTTT-TAATACCAT-TAT
125982093 TATATACTTTTAATACCATTAT
1 TATATACTTTTAATACCATTAT
125982115 TAT
1 TAT
125982118 TTATATATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
23 14 0.61
24 3 0.13
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATACTTTTAATACCATTAT
Found at i:125982278 original size:2 final size:2
Alignment explanation
Indices: 125982273--125982301 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
125982263 TAAATACTAT
125982273 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
125982302 GTAGCGACGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:125983312 original size:2 final size:2
Alignment explanation
Indices: 125983305--125983335 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
125983295 GGTTTTAAGA
125983305 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
125983336 CACAATATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:125983377 original size:24 final size:23
Alignment explanation
Indices: 125983350--125983410 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
125983340 ATATAGTATT
125983350 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
* *
125983374 TAAAAACATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
125983398 TAAGAAATATATA
1 TAA-AAATATATA
125983411 TAATTAGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
24 19 0.63
25 9 0.30
26 2 0.07
ACGTcount: A:0.54, C:0.05, G:0.13, T:0.28
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:125983570 original size:21 final size:21
Alignment explanation
Indices: 125983545--125983641 Score: 81
Period size: 21 Copynumber: 4.5 Consensus size: 21
125983535 ATATATACAT
125983545 ATATA-AATAATAGTATTAGAA
1 ATATACAATAATAGTATTA-AA
*
125983566 ATATACAAT-ATAATATTATAA
1 ATATACAATAATAGTATTA-AA
*
125983587 ATATACATATAATAGTATAAAA
1 ATATACA-ATAATAGTATTAAA
* * *
125983609 TATATATAACTAATAATACTAAA
1 -ATATACAA-TAATAGTATTAAA
*
125983632 ATATATAATA
1 ATATACAATA
125983642 TATAAAAACA
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
21 24 0.38
22 16 0.25
23 23 0.37
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (21 bp):
ATATACAATAATAGTATTAAA
Found at i:125983614 original size:44 final size:46
Alignment explanation
Indices: 125983533--125983636 Score: 108
Period size: 44 Copynumber: 2.3 Consensus size: 46
125983523 ACACACACAC
* * *
125983533 ATATATATACATATATAAATAATAGTATTAGAAATATACAA-T-ATA
1 ATAT-TATAAATATACAAATAATAGTATTAAAAATATACAACTAATA
* *
125983578 ATATTATAAATATACATATAATAGTA-TAAAATATATATAACTAATA
1 ATATTATAAATATACAAATAATAGTATTAAAA-ATATACAACTAATA
*
125983624 ATACTA-AAATATA
1 ATATTATAAATATA
125983637 TAATATATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
43 4 0.08
44 26 0.52
45 12 0.24
46 8 0.16
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.36
Consensus pattern (46 bp):
ATATTATAAATATACAAATAATAGTATTAAAAATATACAACTAATA
Found at i:125983654 original size:15 final size:15
Alignment explanation
Indices: 125983636--125983674 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
125983626 ACTAAAATAT
125983636 ATAATATATAAAAAC
1 ATAATATATAAAAAC
*
125983651 ATAATAT-TGAAAAC
1 ATAATATATAAAAAC
125983665 AT-ATATATAA
1 ATAATATATAA
125983675 CATATATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 4 0.19
14 10 0.48
15 7 0.33
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (15 bp):
ATAATATATAAAAAC
Found at i:125983674 original size:20 final size:22
Alignment explanation
Indices: 125983651--125983703 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
125983641 ATATAAAAAC
125983651 ATAATATTGAA-AACATAT-AT
1 ATAATATTGAAGAACATATAAT
*
125983671 ATAACATATATGAAGAATATATAAT
1 AT-A-ATAT-TGAAGAACATATAAT
125983696 ATAATATT
1 ATAATATT
125983704 CAAACATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
20 2 0.07
21 1 0.04
22 5 0.19
23 8 0.30
24 7 0.26
25 4 0.15
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.36
Consensus pattern (22 bp):
ATAATATTGAAGAACATATAAT
Found at i:125983897 original size:3 final size:3
Alignment explanation
Indices: 125983883--125984043 Score: 59
Period size: 3 Copynumber: 53.7 Consensus size: 3
125983873 ATACATACAC
* *
125983883 TAA TAT TAA TAA TAA TAA TAA -AA CTAGA -AA TAA TAA TAA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA
* * * ** * * *
125983929 TTA TAA TACA TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA CAG
1 TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * *
125983974 TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAGA -AA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TA-A TAA TAA
* *
125984019 -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
125984044 TGTAAAAAAA
Statistics
Matches: 114, Mismatches: 28, Indels: 32
0.66 0.16 0.18
Matches are distributed among these distances:
2 13 0.11
3 88 0.77
4 12 0.11
5 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:125984025 original size:14 final size:15
Alignment explanation
Indices: 125983999--125984032 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
125983989 TAACAGTAAT
125983999 AATAAAGATAATAGA
1 AATAAAGATAATAGA
*
125984014 AATAAA-ATAATAGT
1 AATAAAGATAATAGA
125984028 AATAA
1 AATAA
125984033 TATTAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (15 bp):
AATAAAGATAATAGA
Found at i:125984456 original size:36 final size:34
Alignment explanation
Indices: 125984377--125984456 Score: 83
Period size: 36 Copynumber: 2.3 Consensus size: 34
125984367 CGGATCGGGT
125984377 TAGG-CCAAAACGACGTCATTTTGGGGCTTAAGTA
1 TAGGCCCAAAACGACGTCATTTTGGGGCTTAAG-A
* *
125984411 TAGCCCCCAAAACGACGTCGTTTTGGAGGGCTATAA-A
1 TAG-GCCCAAAACGACGTCATTTT-G-GGGCT-TAAGA
125984448 TAGGCCCAA
1 TAGGCCCAA
125984457 TTTTAGAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
34 3 0.08
36 22 0.58
37 5 0.13
38 5 0.13
39 3 0.08
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (34 bp):
TAGGCCCAAAACGACGTCATTTTGGGGCTTAAGA
Found at i:125984684 original size:2 final size:2
Alignment explanation
Indices: 125984677--125984706 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
125984667 TAATATGTTC
125984677 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
125984707 GGTAAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:125985968 original size:75 final size:74
Alignment explanation
Indices: 125985818--125986377 Score: 662
Period size: 75 Copynumber: 7.5 Consensus size: 74
125985808 CATGCGATCC
* * **
125985818 GAGGCTCCACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAGAGATCAAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAATTACCTCA
*
125985881 GCGTGTCCT
66 GCGTGTCTT
*
125985890 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTATTTTGAAAGACAGAAATTGAAATTACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAGACAGAAATTGAAATTACCTC
125985955 AGCGTGTCTT
65 AGCGTGTCTT
* *
125985965 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAATTACCTCA
*
125986030 ACGTGTCTT
66 GCGTGTCTT
* * * * *
125986039 GAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTGAAAGACGGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTGAAAGACAGAAATTGAAATTACCTC
** *
125986104 AATGTCTCTT
65 AGCGTGTCTT
* * * * ** *
125986114 GAGGCTCAACTCACTTCTTGCAGTATGAGTTGA-ATTTTG-AA-ACAGAAATAAAAATTATCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAATTACCTCA
**
125986176 GCGTGTCCC
66 GCGTGTCTT
* *
125986185 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAATTAGC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAAGACAGAAATTGAAATTACC
*
125986250 TCAGCGTGTCCT
63 TCAGCGTGTCTT
* * * *
125986262 GAGGCTCAACTCACCTCTCGTAAAATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTGAAATTACCTC
* * *
125986327 AACATGTCAGTC
65 AGCGTGTC--TT
* * *
125986339 AAGGCTTAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
125986378 TGAACGTTAA
Statistics
Matches: 426, Mismatches: 50, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
71 49 0.12
72 33 0.08
73 6 0.01
74 74 0.17
75 172 0.40
76 8 0.02
77 84 0.20
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (74 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAATTACCTCA
GCGTGTCTT
Found at i:125986048 original size:149 final size:147
Alignment explanation
Indices: 125985818--125986381 Score: 675
Period size: 149 Copynumber: 3.8 Consensus size: 147
125985808 CATGCGATCC
* * * *
125985818 GAGGCTCCACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAGATCAAAATTACCTCAGC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATGAAAATTACCTCAAC
** * *
125985883 GTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTATTTTGAAAGACAGAAATTGAAA
66 GTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAA
125985948 TTACCTCAGCGTGTCTT
131 TTACCTCAGCGTGTCTT
*
125985965 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAA-TACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAGAAA-TGAAAATTACCTC
*** * * * * *
125986029 AACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTGAAAGACGGAAATTG
63 AACGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG
* ** *
125986094 AAAATACCTCAATGTCTCTT
128 AAATTACCTCAGCGTGTCTT
* * * * * * *
125986114 GAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTG-AAACAGAAATAAAAATTATCTCAGC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATGAAAATTACCTCAAC
125986178 GTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGA
66 GTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAGAAATTGA
* *
125986243 AATTAGCTCAGCGTGTCCT
129 AATTACCTCAGCGTGTCTT
* * *
125986262 GAGGCTCAACTCACCTCTCGTAAAATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAA-TACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAA-TGAAAATTACCT
* * * *
125986326 CAACATGTCAGTCAAGGCTTAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAA
62 CAACGTGTC--CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
125986382 CGTTAAAAAT
Statistics
Matches: 351, Mismatches: 53, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
145 5 0.01
146 48 0.14
147 33 0.09
148 76 0.22
149 113 0.32
150 10 0.03
151 2 0.01
152 27 0.08
153 5 0.01
154 32 0.09
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (147 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATGAAAATTACCTCAAC
GTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAA
TTACCTCAGCGTGTCTT
Found at i:125986293 original size:223 final size:223
Alignment explanation
Indices: 125985778--125986377 Score: 669
Period size: 223 Copynumber: 2.7 Consensus size: 223
125985768 TGAAACTTAA
* * * *
125985778 TTTGAAA-AGCAGAATTTGAAAATACCTCGACATGCGATCC-GAGGCTCCACTCACCTCTCGCAA
1 TTTGAAAGA-CAGAAATTGAAAATACCTC-A-ACGTG-TCCTGAGGCTCAACTCACCTCTCGCAA
* * * *
125985841 TATGAGTTG-A-TTTTTGAAA-ACAGAGA-TCAAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
62 TATGAGTTGAATTTTTTGAAAGACAGAAATTGAAAA-TACCTCAACGTCTCCTGAGGCTCAACTC
** ***
125985902 ACCTCTCACAATATGAGTTGATTATTTTGAAAGACAGAAATTGAAATTACCTCAGCGTGTCTTGA
126 ACCTCTCACAATATGAGTTGA-TATTTTGAAAGACAGAAATAAAAATTACCTCAGCGTGTCCCAA
125985967 GGCTCAACTCACCTCTCACAATATGAGTTGATTT
190 GGCTCAACTCACCTCTCACAATATGAGTTGATTT
* * * *
125986001 TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATG
1 TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * *
125986066 AGTTGAATTTTTTGAAAGACGGAAATTGAAAATACCTCAATGTCTCTTGAGGCTCAACTCACTTC
66 AGTTGAATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTCTCCTGAGGCTCAACTCACCTC
** * *
125986131 TTGCAGTATGAGTTGA-ATTTTG-AA-ACAGAAATAAAAATTATCTCAGCGTGTCCCAAGGCTCA
131 TCACAATATGAGTTGATATTTTGAAAGACAGAAATAAAAATTACCTCAGCGTGTCCCAAGGCTCA
*
125986193 ACTCACCTCTCGCAATATGAGTTGATTTTTT
196 ACTCACCTCTCACAATATGAGTTGA---TTT
* * * * *
125986224 TTTGAAAGACAGAAATTGAAATTAGCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAAAATG
1 TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * * * * *
125986289 AGTTGATTTTTTTGAAAGGCAGAAATTGAAAATACCTCAACATGTCAGTCAAGGCTTAACTCACC
66 AGTTGAATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTCTC-CT-GAGGCTCAACTCACC
* * *
125986354 TCTCGCAATATGAGCTGATTTTTT
129 TCTCACAATATGAGTTGATATTTT
125986378 TGAACGTTAA
Statistics
Matches: 316, Mismatches: 49, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
220 58 0.18
221 33 0.10
222 8 0.03
223 133 0.42
224 48 0.15
225 32 0.10
226 4 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (223 bp):
TTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGAATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTCTCCTGAGGCTCAACTCACCTC
TCACAATATGAGTTGATATTTTGAAAGACAGAAATAAAAATTACCTCAGCGTGTCCCAAGGCTCA
ACTCACCTCTCACAATATGAGTTGATTT
Found at i:125991290 original size:46 final size:46
Alignment explanation
Indices: 125991230--125991549 Score: 397
Period size: 46 Copynumber: 7.0 Consensus size: 46
125991220 TTTGACATGA
* * * * ** * *
125991230 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
** *
125991276 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
* **** ** * *
125991322 TGCCATGCTATCTTTCAACCATGGTCTTGTTTATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
* *
125991368 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
* *
125991414 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
* *
125991460 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
*
125991506 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAG
125991550 AGAGCACACT
Statistics
Matches: 244, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 244 1.00
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGC
Found at i:125996664 original size:46 final size:46
Alignment explanation
Indices: 125996503--125996773 Score: 350
Period size: 46 Copynumber: 6.0 Consensus size: 46
125996493 TTATCTTTGA
* * * * *
125996503 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTT-TTGT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
125996548 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * **
125996594 CA--CTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCCGT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
125996638 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
125996684 CAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
125996730 CAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGCTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
125996774 ATCAAGAGCA
Statistics
Matches: 204, Mismatches: 19, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
44 40 0.20
45 36 0.18
46 128 0.63
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
CATGCTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:125998930 original size:18 final size:20
Alignment explanation
Indices: 125998915--125998951 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
125998905 TAATAATAAA
*
125998915 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
125998935 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
125998952 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:126001179 original size:27 final size:28
Alignment explanation
Indices: 126001142--126001280 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
126001132 AGCATGGCTG
* *
126001142 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
126001168 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
126001196 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
126001223 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
126001250 CCAGAT-CAG-TATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
126001276 CCAGA
1 CCAGA
126001281 ACGCTTCCTC
Statistics
Matches: 105, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
26 26 0.25
27 62 0.59
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:126002908 original size:26 final size:26
Alignment explanation
Indices: 126002879--126002988 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
126002869 CATGAAATTC
126002879 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
126002905 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
126002931 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
126002957 TTATCATGGAACATTTACCTAAGCTA
1 TTATCATGAAACATTTACCTAACCCA
126002983 TTATCA
1 TTATCA
126002989 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:126010033 original size:18 final size:18
Alignment explanation
Indices: 126010000--126010054 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 18
126009990 CGTGATCTGA
*
126010000 TTGAAAA-ACAAGAATTT
1 TTGAAAACACAAAAATTT
*
126010017 TTTAAAACACAAAAA-TT
1 TTGAAAACACAAAAATTT
*
126010034 TTGAAAACACGAAAATTT
1 TTGAAAACACAAAAATTT
126010052 TTG
1 TTG
126010055 GGATCCAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
17 21 0.66
18 11 0.34
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (18 bp):
TTGAAAACACAAAAATTT
Found at i:126010674 original size:18 final size:17
Alignment explanation
Indices: 126010648--126010701 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
126010638 AATAAGCATA
126010648 ATAATAAATATAATGATAT
1 ATAA-AAATATAAT-ATAT
*
126010667 ATAAAAATAATACTATAT
1 ATAAAAAT-ATAATATAT
*
126010685 ATAAAAGTAT-ATATAT
1 ATAAAAATATAATATAT
126010701 A
1 A
126010702 CGTACAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 6 0.19
17 2 0.06
18 15 0.48
19 8 0.26
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (17 bp):
ATAAAAATATAATATAT
Found at i:126010767 original size:3 final size:3
Alignment explanation
Indices: 126010759--126010812 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
126010749 AAAAATAAGT
* * * *
126010759 ATA ATA AT- ATA TTA GATA GTA AAA ATA ATA ATA ATA ACA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
126010804 ATA ATA ATA
1 ATA ATA ATA
126010813 TGTGAAGGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:126011892 original size:64 final size:64
Alignment explanation
Indices: 126011819--126012035 Score: 154
Period size: 64 Copynumber: 3.3 Consensus size: 64
126011809 CTGGGCCAGA
* *
126011819 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
***** * ** *
126011883 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAAAATACAAT--AA-A-CTGGGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
126011945 CTGGGCCAGA-
55 -TGGCCCATAG
* * *
126011955 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
126012019 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
126012036 TGCAACATCA
Statistics
Matches: 107, Mismatches: 30, Indels: 32
0.63 0.18 0.19
Matches are distributed among these distances:
63 9 0.08
64 31 0.29
65 5 0.05
66 1 0.01
67 13 0.12
68 4 0.04
69 13 0.12
70 1 0.01
71 5 0.05
72 16 0.15
73 9 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:126012029 original size:136 final size:136
Alignment explanation
Indices: 126011785--126012069 Score: 543
Period size: 136 Copynumber: 2.1 Consensus size: 136
126011775 TATTGGGCCT
**
126011785 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
126011850 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
126011915 ATATGC
131 ATATGC
*
126011921 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
126011986 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
126012051 ATATGC
131 ATATGC
126012057 AAGCCCATTTGGG
1 AAGCCCATTTGGG
126012070 GAGACTACTC
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:126012105 original size:21 final size:21
Alignment explanation
Indices: 126012076--126012123 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
126012066 TGGGGAGACT
*
126012076 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
126012097 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
126012118 ACTCCA
1 ACTCCA
126012124 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:126012350 original size:25 final size:26
Alignment explanation
Indices: 126012316--126012367 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
126012306 TCAAACATGC
126012316 ATTTAGGTAATTTAAC-CCTAGGGGT
1 ATTTAGGTAATTTAACTCCTAGGGGT
* *
126012341 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAGGTAATTTAACTCCTAGGGGT
126012367 A
1 A
126012368 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTAATTTAACTCCTAGGGGT
Found at i:126013880 original size:26 final size:26
Alignment explanation
Indices: 126013844--126013927 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
126013834 CATGAAATTC
126013844 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
126013870 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
126013896 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
126013922 TTATCA
1 TTATCA
126013928 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:126017887 original size:136 final size:134
Alignment explanation
Indices: 126017643--126017925 Score: 530
Period size: 136 Copynumber: 2.1 Consensus size: 134
126017633 TATTGGGCCT
**
126017643 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
126017708 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATC-A-AAC
126017773 ATATGC
129 ATATGC
126017779 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
126017844 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAACAT
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAACAT
126017909 ATGC
131 ATGC
126017913 AAGCCCATTTGGG
1 AAGCCCATTTGGG
126017926 GAGACTACTC
Statistics
Matches: 145, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
134 22 0.15
135 1 0.01
136 122 0.84
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (134 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAACAT
ATGC
Found at i:126017961 original size:21 final size:21
Alignment explanation
Indices: 126017932--126017979 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
126017922 TGGGGAGACT
*
126017932 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
126017953 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
126017974 ACTCCA
1 ACTCCA
126017980 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:126018209 original size:25 final size:27
Alignment explanation
Indices: 126018172--126018224 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
126018162 TCAAACATGC
126018172 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
126018198 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
126018224 A
1 A
126018225 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:126019735 original size:26 final size:26
Alignment explanation
Indices: 126019699--126019782 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
126019689 CATGAAATTC
126019699 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
126019725 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
126019751 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
126019777 TTATCA
1 TTATCA
126019783 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:126025006 original size:26 final size:26
Alignment explanation
Indices: 126024970--126025079 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
126024960 CATGATATTC
126024970 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
126024996 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
126025022 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
126025048 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
126025074 TTATCA
1 TTATCA
126025080 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:126032936 original size:68 final size:70
Alignment explanation
Indices: 126032771--126032944 Score: 210
Period size: 71 Copynumber: 2.5 Consensus size: 70
126032761 CTTTTCAAGG
* * *
126032771 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTTTG
126032836 TTTTCA
66 TTTT-A
* * * * *
126032842 AAATCAACTCATATTGCGAGAAGTGAGTTGAGTCT-AGGGCACGCTGAGGTATTTTT-AGTTTAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTT-T
126032905 GTTTT-
65 GTTTTA
** *
126032910 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
126032945 TTTAATTTTT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
68 30 0.34
69 4 0.04
70 23 0.26
71 32 0.36
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.35
Consensus pattern (70 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAAATTTTG
TTTTA
Found at i:126033327 original size:140 final size:140
Alignment explanation
Indices: 126033038--126033439 Score: 761
Period size: 140 Copynumber: 2.9 Consensus size: 140
126033028 TGTTTTAATT
126033038 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
1 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
126033103 TGCGAGAGGT-AGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGT
66 TGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGT
126033167 TGTTCAAGAA
131 TGTTCAAGAA
126033177 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
1 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
126033242 TGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGT
66 TGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGT
126033307 TGTTCAAGAA
131 TGTTCAAGAA
* *
126033317 TCAACTCATATTGCGAGAGGTGGGTTGAACATTTTAATTTCTACTTTTTCAAAATCAACTCATAT
1 TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
* *
126033382 TGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTGTCAA
66 TGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
126033440 AAAAATCAAC
Statistics
Matches: 258, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
139 75 0.29
140 183 0.71
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (140 bp):
TCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAGCTCATAT
TGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTTACGT
TGTTCAAGAA
Found at i:126033493 original size:74 final size:74
Alignment explanation
Indices: 126033367--126033658 Score: 415
Period size: 77 Copynumber: 3.9 Consensus size: 74
126033357 CTACTTTTTC
126033367 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
126033432 GTTGTCAAA
66 GTTGTCAAA
* * * * *
126033441 AAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTAAGGTATTGTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
126033506 CGTATGTTTC-AA
66 -GT-TG--TCAAA
*
126033518 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
126033583 GTTGTAAAAA
66 GTTGT-CAAA
* * * *
126033593 AAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCGCACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT
126033658 C
64 C
126033659 CGTTTTTCAA
Statistics
Matches: 193, Mismatches: 17, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
73 1 0.01
74 60 0.31
75 44 0.23
76 4 0.02
77 82 0.42
78 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTGTCAAA
Found at i:126033667 original size:151 final size:151
Alignment explanation
Indices: 126033367--126033668 Score: 477
Period size: 151 Copynumber: 2.0 Consensus size: 151
126033357 CTACTTTTTC
126033367 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
* * *
126033432 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTAAGGTATTG
66 GTTGTAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGACACGCCAAGGTATTG
*
126033497 TCAATTTTTCGTATGTTTCAA
131 TCAATTTTCCGTATGTTTCAA
*
126033518 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
126033583 GTTGTAAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCG-CACGCCGAGGT
66 GTTGT-AAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTC-GG--GACACGCCAAGGT
*
126033647 ATTTTCAA-TTTCCGT-T-TTTCAA
127 ATTGTCAATTTTCCGTATGTTTCAA
126033669 TTTCTTCCTT
Statistics
Matches: 140, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
151 75 0.54
152 40 0.29
153 8 0.06
154 16 0.11
155 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (151 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTGTAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCGGGACACGCCAAGGTATTG
TCAATTTTCCGTATGTTTCAA
Found at i:126033858 original size:171 final size:167
Alignment explanation
Indices: 126033516--126033990 Score: 695
Period size: 169 Copynumber: 2.8 Consensus size: 167
126033506 CGTATGTTTC
*
126033516 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
*
126033581 CTGTTGTAAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCGCACGCCGAGG
66 CTGTTGT-AAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGG
*
126033646 TATTTTCAATTTCCGTTTTTCAATTTCTTCCTTTCAAAAA
130 TATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC--AAA
* *
126033686 AACAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
*
126033751 TCTGTTGT-AAAAAAATCAACTCGTATTGCGAGCA-GCGAGTTGAGCCTCAGGTCACATGCCGAG
65 TCTGTTGTAAAAAAAATCAACTCGTATTGCGAG-AGGCGAGTTGAGCCTCAGGTCACACGCCGAG
126033814 GTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
129 GTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
* * *
126033853 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAA
* * * * * * * *
126033917 TTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTG
63 TTTCTGT-TGTAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCG
126033982 AGGTATTTT
127 AGGTATTTT
126033991 TTCAATTTAT
Statistics
Matches: 278, Mismatches: 19, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
165 2 0.01
166 35 0.13
167 5 0.02
168 24 0.09
169 89 0.32
170 56 0.20
171 67 0.24
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (167 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
CTGTTGTAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGT
ATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAA
Found at i:126033912 original size:93 final size:93
Alignment explanation
Indices: 126033759--126033930 Score: 231
Period size: 93 Copynumber: 1.8 Consensus size: 93
126033749 TTTCTGTTGT
* * *
126033759 AAAAAAATCAACTCGTATTGCGAGCAGCGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGCAGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
126033824 TTTCCGTTTTTCAATTTCTGCCTTTCAA
66 TTTCCGTCTTTCAATTTCTGCCTTTCAA
* * * *
126033852 AAAAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTC
1 AAAAAAATCAACTCATATTGCGAGCA-GCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTC
*
126033915 AATTTCTGTCTTTCAA
64 AATTTCCGTCTTTCAA
126033931 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 3 0.04
93 65 0.96
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGCAGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCAA
Found at i:126033960 original size:77 final size:77
Alignment explanation
Indices: 126033831--126034212 Score: 372
Period size: 79 Copynumber: 4.7 Consensus size: 77
126033821 CAATTTCCGT
**
126033831 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
126033896 CACGCGCTGAGCTA
64 CACACGCTGAGCTA
* * *
126033910 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
* *
126033974 ACACACTGAGGTA
65 ACACGCTGAGCTA
* * * * * *
126033987 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
126034052 CACATG-TCGAGGTA
64 CACACGCT-GAGCTA
** *
126034066 TTTTCAAAATCTGTTTTTCAAATCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTCAATTTCTGTTTTTC-AA---------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
** *
126034131 CCTTGGCTCACGTGCTGATCTA
56 CCTTGGCTCACACGCTGAGCTA
126034153 TTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTG---TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
126034213 TTTTTAATTT
Statistics
Matches: 253, Mismatches: 30, Indels: 38
0.79 0.09 0.12
Matches are distributed among these distances:
76 3 0.01
77 64 0.25
78 3 0.01
79 80 0.32
80 7 0.03
81 29 0.11
87 58 0.23
88 1 0.00
89 2 0.01
90 6 0.02
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACGCTGAGCTA
Found at i:126034097 original size:12 final size:13
Alignment explanation
Indices: 126034066--126034099 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
126034056 TGTCGAGGTA
126034066 TTTTCAAAATCTGT
1 TTTTC-AAATCTGT
126034080 TTTTCAAATCTG-
1 TTTTCAAATCTGT
126034092 TTTTCAAA
1 TTTTCAAA
126034100 AATCAACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 7 0.35
14 5 0.25
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAATCTGT
Found at i:126034103 original size:14 final size:14
Alignment explanation
Indices: 126034066--126034100 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
126034056 TGTCGAGGTA
126034066 TTTTCAAAATCTGT
1 TTTTCAAAATCTGT
126034080 TTTTC-AAATCTG-
1 TTTTCAAAATCTGT
126034092 TTTTCAAAA
1 TTTTCAAAA
126034101 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 10 0.50
14 5 0.25
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (14 bp):
TTTTCAAAATCTGT
Found at i:126034130 original size:243 final size:241
Alignment explanation
Indices: 126033689--126034417 Score: 829
Period size: 243 Copynumber: 3.0 Consensus size: 241
126033679 TCAAAAAAAC
* * * * *
126033689 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA-ATTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTCAATT
* * * * *
126033751 TCT-GTTGT-AAAAAAATCAACTCGTATTGCGAGCAGCGAGTTGAGCCTCAGGTCACATGCCGAG
66 TCTATTTTTCAAAAAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTCAGGTCACATGTCGAG
** * *
126033814 GTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGG
130 GTATTTTCAAAATCTGTTTTTCAA-ATCTG--TTTC---AAAAAATCAACTCATATTGCGAGAGG
126033879 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAA
189 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAA
126033932 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTA-TTTTTCAAT
* * *
126033997 TTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGA
65 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGTCACATGTCGA
*
126034062 GGTATTTTCAAAATCTGTTTTTCAAATCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAG
129 GGTATTTTCAAAATCTGTTTTTCAAATCTG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAG
* * *
126034126 TTGAGCCTTGGCTCACGTGCTGATCTATTTTCAATTTCTGTTTTTTTTCAAA
193 TTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTG---TCTTTCAAA
* * * * *
126034178 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAG
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-
* *
126034242 TCTTTT-AATTTCTATTTTTC--AAAAATCAACTCATATTGC-AGAGGTGAGTTAAACCTCCA-G
56 T-TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCT-CAGG
* * *
126034302 TCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGT-TAAGTTTCAAAAAATCAACTCATATT
118 TCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATCT--GTTTCAAAAAATCAACTCATATT
126034366 GCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCT-AGCTATTTTCAATTTCTGT
181 GCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGT
126034418 TTTTAATGTC
Statistics
Matches: 422, Mismatches: 40, Indels: 43
0.84 0.08 0.09
Matches are distributed among these distances:
243 103 0.24
245 12 0.03
246 12 0.03
247 44 0.10
248 10 0.02
249 72 0.17
250 3 0.01
251 72 0.17
252 70 0.17
253 5 0.01
254 15 0.04
255 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (241 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTCAATT
TCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGTCACATGTCGAGG
TATTTTCAAAATCTGTTTTTCAAATCTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAA
Found at i:126034156 original size:87 final size:87
Alignment explanation
Indices: 126034010--126034170 Score: 225
Period size: 87 Copynumber: 1.9 Consensus size: 87
126034000 TATTTTTCAA
* * *
126034010 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
126034075 TCTGTTTTTCAAATCTGTTTTC
66 TCTGTTTTTCAAATCTGTTTTC
* * * * *
126034097 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGATCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
126034161 TTCTGTTTTT
65 ATCTGTTTTT
126034171 TTTCAAAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
86 1 0.02
87 63 0.98
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTGTTTTTCAAATCTGTTTTC
Found at i:126034230 original size:30 final size:30
Alignment explanation
Indices: 126034194--126034254 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
126034184 CAACTCATAT
126034194 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
126034224 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
126034254 T
1 T
126034255 ATTTTTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:126035948 original size:3 final size:3
Alignment explanation
Indices: 126035903--126035934 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
126035893 TTATTGTAGA
126035903 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
126035935 CATACTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:126038040 original size:26 final size:26
Alignment explanation
Indices: 126038001--126038110 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
126037991 TGATACAAAT
*
126038001 TGATAATAGCTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126038027 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126038053 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126038079 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126038105 TGATAA
1 TGATAA
126038111 GAATTTTATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:126039622 original size:26 final size:26
Alignment explanation
Indices: 126039593--126039642 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
126039583 ACAGTTTTAT
126039593 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
126039619 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
126039643 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:126040335 original size:136 final size:137
Alignment explanation
Indices: 126039890--126040449 Score: 1050
Period size: 137 Copynumber: 4.1 Consensus size: 137
126039880 GAGTAGTCTC
* *
126039890 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
*
126039955 TGTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
126040020 ACTGTTA
131 ACTGTTA
*
126040027 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
126040092 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
126040157 ACTGTTA
131 ACTGTTA
126040164 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
126040229 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
126040293 ACTGTTA
131 ACTGTTA
126040300 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
*
126040365 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
126040430 ACTGTTA
131 ACTGTTA
**
126040437 CCTGAATGGGCTT
1 CCCAAATGGGCTT
126040450 AGGCCCAATG
Statistics
Matches: 416, Mismatches: 6, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
136 136 0.33
137 280 0.67
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:126040378 original size:273 final size:274
Alignment explanation
Indices: 126039890--126040449 Score: 1050
Period size: 273 Copynumber: 2.0 Consensus size: 274
126039880 GAGTAGTCTC
* *
126039890 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
*
126039955 TGTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
126040020 ACTGTTACCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGG
131 ACTGTTACCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGG
*
126040085 GCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCC
196 GCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCC
126040150 CAGTACCACTGTTA
261 CAGTACCACTGTTA
126040164 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
126040229 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
126040293 ACTGTTACCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGG
131 ACTGTTACCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGG
126040358 GCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCC
196 GCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCC
126040423 CAGTACCACTGTTA
261 CAGTACCACTGTTA
**
126040437 CCTGAATGGGCTT
1 CCCAAATGGGCTT
126040450 AGGCCCAATG
Statistics
Matches: 279, Mismatches: 7, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
273 202 0.72
274 77 0.28
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (274 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTACCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGG
GCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCC
CAGTACCACTGTTA
Found at i:126044257 original size:26 final size:26
Alignment explanation
Indices: 126044221--126044330 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
126044211 TGATACAAAT
*
126044221 TGATAATAGGTTAGATAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126044247 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126044273 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126044299 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126044325 TGATAA
1 TGATAA
126044331 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:126046361 original size:137 final size:137
Alignment explanation
Indices: 126046115--126046538 Score: 767
Period size: 137 Copynumber: 3.1 Consensus size: 137
126046105 GAGTAGTCTC
* *
126046115 CCCAAATGGGCTTACATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
126046180 TGTTATCTGAATAAGGGGCTAAGGCTCGGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
126046245 ACTGTTA
131 ACTGTTA
*
126046252 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
126046317 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
126046382 ACTGTTA
131 ACTGTTA
*
126046389 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCACGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
126046454 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
126046519 ACTGTTA
131 ACTGTTA
**
126046526 CCTGAATGGGCTT
1 CCCAAATGGGCTT
126046539 AGGCCCAATG
Statistics
Matches: 277, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 277 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:126051940 original size:53 final size:52
Alignment explanation
Indices: 126051787--126051942 Score: 183
Period size: 52 Copynumber: 3.0 Consensus size: 52
126051777 TGACAGAAAA
126051787 GATGTGATATGT-ATTTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
1 GATGTGATATGTGATTT-CGTATAAGACCATAACTGGGCTATGGCATCGGTAC
* * * **
126051839 AATGTGAT-TCGCG-TTCCCGTATAAGACCATAACTGGGCTATGGCATCGGTGT
1 GATGTGATAT-GTGATT-TCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
* * *
126051891 GATGTGATAATGTGATTTCGTAAAAGACCATATCTGGGATATGGCATCGGTA
1 GATGTGAT-ATGTGATTTCGTATAAGACCATAACTGGGCTATGGCATCGGTA
126051943 TGTTATGTGA
Statistics
Matches: 86, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
51 1 0.01
52 50 0.58
53 32 0.37
54 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (52 bp):
GATGTGATATGTGATTTCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
Found at i:126053602 original size:25 final size:25
Alignment explanation
Indices: 126053556--126053603 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
126053546 TTATAATATG
* * * *
126053556 AAAATGACCGTTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
126053581 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
126053604 GTTTAAATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:126053687 original size:11 final size:11
Alignment explanation
Indices: 126053651--126053706 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
126053641 CATGGTATGT
126053651 ATGATATGCAC
1 ATGATATGCAC
* *
126053662 ATGACATG--T
1 ATGATATGCAC
126053671 ATGATATGCAC
1 ATGATATGCAC
*
126053682 ATGATATG--T
1 ATGATATGCAC
126053691 ATGATATGCAC
1 ATGATATGCAC
126053702 ATGAT
1 ATGAT
126053707 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:126053706 original size:20 final size:20
Alignment explanation
Indices: 126053640--126053706 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
126053630 ATTTTGATAA
*
126053640 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
126053660 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
126053680 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
126053700 ACATGAT
1 ACATGAT
126053707 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:126053783 original size:25 final size:25
Alignment explanation
Indices: 126053755--126053884 Score: 169
Period size: 25 Copynumber: 5.2 Consensus size: 25
126053745 GGAGAAAGTG
126053755 TAAAGGGCTTATGCCCCAGTTATGA
1 TAAAGGGCTTATGCCCCAGTTATGA
126053780 TAAAGGGCTTATGCCCCAGTTATGA
1 TAAAGGGCTTATGCCCCAGTTATGA
*
126053805 TAAAGGGCTTATGCCCCAGTTATTA
1 TAAAGGGCTTATGCCCCAGTTATGA
*
126053830 -AAAGGGCTT-TGCCCCAGTTATTA
1 TAAAGGGCTTATGCCCCAGTTATGA
*
126053853 -AAAGAGGC-TAGGCCTCCAGTTATATGA
1 TAAAG-GGCTTATGCC-CCAG-T-TATGA
126053880 TAAAG
1 TAAAG
126053885 CAGCTATGCT
Statistics
Matches: 96, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
23 19 0.20
24 15 0.16
25 53 0.55
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (25 bp):
TAAAGGGCTTATGCCCCAGTTATGA
Found at i:126054104 original size:31 final size:31
Alignment explanation
Indices: 126054069--126054128 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
126054059 CGTTTACAGT
126054069 AAAGGCTTCGGCCCAGTAATATGAAATATAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATAA
**
126054100 AAAGGCTTCGGCCCAGTGTTATGAAATAT
1 AAAGGCTTCGGCCCAGTAATATGAAATAT
126054129 GAAATATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATAA
Found at i:126057051 original size:20 final size:18
Alignment explanation
Indices: 126057026--126057062 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
126057016 ATTGCTAAGT
126057026 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
126057046 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
126057063 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:126057674 original size:46 final size:47
Alignment explanation
Indices: 126057624--126057797 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 47
126057614 GTTGAGCATC
*
126057624 CGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG-TT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGATT
* * * *
126057670 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGACATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G--ATT
* * *
126057717 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGATT
*
126057764 -GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
126057798 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 60 0.56
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGATT
Found at i:126057779 original size:93 final size:93
Alignment explanation
Indices: 126057620--126057789 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
126057610 GATGGTTGAG
*
126057620 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTTCGAACTCGTTGAGTT
126057685 GAGTCCGAGTTCGTGAGATGTAACTAGA
66 GAGTCCGAGTTCGTGAGATGTAACTAGA
* * *
126057713 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTT-GAGCTCGTTGAGT
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG-TTCGAACTCGTTGAGT
126057777 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
126057790 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTTCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAGA
Found at i:126060590 original size:25 final size:25
Alignment explanation
Indices: 126060553--126060608 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
126060543 ATATATGTAT
*
126060553 ACATA-TTTAAATACTATATTATAC
1 ACATATTTTAAATACCATATTATAC
* * *
126060577 ACATATTTTTAATACCATGTTATAT
1 ACATATTTTAAATACCATATTATAC
126060602 ACATATT
1 ACATATT
126060609 ATTATTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (25 bp):
ACATATTTTAAATACCATATTATAC
Found at i:126060694 original size:21 final size:21
Alignment explanation
Indices: 126060670--126060717 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
126060660 TGTGTTTTAT
* *
126060670 TATATGTATATATCTTTAATG
1 TATATATATATATATTTAATG
*
126060691 TATATATATATATATTTTATG
1 TATATATATATATATTTAATG
126060712 TA-ATAT
1 TATATAT
126060718 TATTAATAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (21 bp):
TATATATATATATATTTAATG
Found at i:126060795 original size:24 final size:24
Alignment explanation
Indices: 126060748--126060842 Score: 68
Period size: 24 Copynumber: 3.7 Consensus size: 24
126060738 ACATTATTAT
126060748 TATTTCTAATATGTATATACTATGTAAA
1 TATTT-TAATAT-TATAT--TATGTAAA
*
126060776 TATTTTAATATTATATTATGTATA
1 TATTTTAATATTATATTATGTAAA
* *
126060800 CATTTT-TTA-TATATTATGTATATA
1 TATTTTAATATTATATTATGTA-A-A
*
126060824 TATCTTTTAATATTGTATT
1 TA--TTTTAATATTATATT
126060843 TTTTATATGT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
22 11 0.20
23 2 0.04
24 14 0.26
26 9 0.17
27 8 0.15
28 10 0.19
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (24 bp):
TATTTTAATATTATATTATGTAAA
Found at i:126060821 original size:11 final size:11
Alignment explanation
Indices: 126060757--126060824 Score: 55
Period size: 11 Copynumber: 6.0 Consensus size: 11
126060747 TTATTTCTAA
*
126060757 TATGTATATAC
1 TATGTATATAT
*
126060768 TATGTAAATAT
1 TATGTATATAT
* *
126060779 TTTAATATTATAT
1 TAT-GTA-TATAT
*
126060792 TATGTATACAT
1 TATGTATATAT
* *
126060803 TTTTTATATAT
1 TATGTATATAT
126060814 TATGTATATAT
1 TATGTATATAT
126060825 ATCTTTTAAT
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
11 32 0.76
12 4 0.10
13 6 0.14
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (11 bp):
TATGTATATAT
Found at i:126060861 original size:37 final size:37
Alignment explanation
Indices: 126060801--126060889 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 37
126060791 TTATGTATAC
* *
126060801 ATTTTTTATATATTATGTATATATATCTTTTAATATTGT
1 ATTTTTTATATATTATG-ATATATATC-TTTAATACTAT
*
126060840 ATTTTTTATATGTTATG-TATATATCTTTAATACTAT
1 ATTTTTTATATATTATGATATATATCTTTAATACTAT
*
126060876 ATTATTTATATATT
1 ATTTTTTATATATT
126060890 TTTTTATTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
36 21 0.47
37 8 0.18
39 16 0.36
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.61
Consensus pattern (37 bp):
ATTTTTTATATATTATGATATATATCTTTAATACTAT
Found at i:126060861 original size:50 final size:46
Alignment explanation
Indices: 126060757--126060863 Score: 106
Period size: 50 Copynumber: 2.2 Consensus size: 46
126060747 TTATTTCTAA
*
126060757 TATGTATATACTATGTAAATATTTTAATATTATATTATGTATACAT
1 TATGTATATATTATGTAAATATTTTAATATTATATTATGTATACAT
* * * * * **
126060803 TTTTTATATATTATGTATATATATCTTTTAATATTGTATTTTTTATATGT
1 TATGTATATATTATGTA-A-ATA--TTTTAATATTATATTATGTATACAT
126060853 TATGTATATAT
1 TATGTATATAT
126060864 CTTTAATACT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
46 14 0.30
47 1 0.02
48 3 0.06
50 29 0.62
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.57
Consensus pattern (46 bp):
TATGTATATATTATGTAAATATTTTAATATTATATTATGTATACAT
Found at i:126060937 original size:31 final size:28
Alignment explanation
Indices: 126060856--126060967 Score: 81
Period size: 31 Copynumber: 4.0 Consensus size: 28
126060846 TATATGTTAT
*
126060856 GTATATATCTTTAATACTATATTATTTA
1 GTATATATTTTTAATACTATATTATTTA
* * **
126060884 -TATATTTTTTTATTTTTCATATTATCTTA
1 GTATATATTTTTAATACT-ATATTAT-TTA
126060913 CGTATATATTTTTAATAACTATATTA--T-
1 -GTATATATTTTTAAT-ACTATATTATTTA
* *
126060940 GTATATATTATTACTA-TATATCTATTTA
1 GTATATATTTTTAATACTATAT-TATTTA
126060968 TGTAGCACTA
Statistics
Matches: 64, Mismatches: 11, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
24 5 0.08
25 3 0.05
26 13 0.20
27 13 0.20
28 8 0.12
29 3 0.05
31 18 0.28
32 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (28 bp):
GTATATATTTTTAATACTATATTATTTA
Found at i:126061054 original size:2 final size:2
Alignment explanation
Indices: 126061049--126061075 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
126061039 AATACTATTT
126061049 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
126061076 TAATACCGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:126061137 original size:12 final size:12
Alignment explanation
Indices: 126061122--126061234 Score: 67
Period size: 12 Copynumber: 9.3 Consensus size: 12
126061112 TTTTTATCCC
126061122 TATTATATTTAT
1 TATTATATTTAT
126061134 TATTA-A--TAT
1 TATTATATTTAT
*
126061143 TAGTATATATT-T
1 TATTATAT-TTAT
126061155 TATTATATGTGTAT
1 TATTATAT-T-TAT
126061169 ATATATATACTTT-T
1 -TAT-TATA-TTTAT
*
126061183 TA-TATATAGTAT
1 TATTATAT-TTAT
* *
126061195 TATTTTATATAT
1 TATTATATTTAT
*
126061207 CATTATATTTAT
1 TATTATATTTAT
*
126061219 TATTATACTTAT
1 TATTATATTTAT
126061231 TATT
1 TATT
126061235 TTCACTATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 24
0.69 0.10 0.21
Matches are distributed among these distances:
9 7 0.09
10 2 0.03
11 6 0.08
12 43 0.55
13 8 0.10
14 2 0.03
15 4 0.05
16 5 0.06
17 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.59
Consensus pattern (12 bp):
TATTATATTTAT
Found at i:126061216 original size:17 final size:17
Alignment explanation
Indices: 126061168--126061206 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
126061158 TATATGTGTA
*
126061168 TATATATA-TACT-TTT
1 TATATATAGTATTATTT
126061183 TATATATAGTATTATTT
1 TATATATAGTATTATTT
126061200 TATATAT
1 TATATAT
126061207 CATTATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 3 0.14
17 10 0.48
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (17 bp):
TATATATAGTATTATTT
Found at i:126062915 original size:11 final size:11
Alignment explanation
Indices: 126062885--126062942 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
126062875 CTTTGAAACC
*
126062885 TTTATTTTACT
1 TTTATTTTATT
*
126062896 ATTATTTTTATT
1 TTTA-TTTTATT
126062908 TTTATTTTATT
1 TTTATTTTATT
**
126062919 TCAATTTTATT
1 TTTATTTTATT
*
126062930 TTGTTTTTTATT
1 TT-TATTTTATT
126062942 T
1 T
126062943 CTTTTTGAAG
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
11 20 0.54
12 17 0.46
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:126062925 original size:23 final size:23
Alignment explanation
Indices: 126062901--126062943 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
126062891 TTACTATTAT
126062901 TTTTATTTT-TATTTTATTTCAA
1 TTTTATTTTGTATTTTATTTCAA
*
126062923 TTTTATTTTGTTTTTTATTTC
1 TTTTATTTTGTATTTTATTTC
126062944 TTTTTGAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTTATTTTGTATTTTATTTCAA
Found at i:126064854 original size:30 final size:30
Alignment explanation
Indices: 126064819--126064876 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
126064809 TAGGCACTTT
126064819 CACACGGGT-GATCCACACGCCCGTGTGTGA
1 CACACGGGTAGA-CCACACGCCCGTGTGTGA
126064849 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACGGGTAGACCACACGCCCGTGTGT
126064877 CATGGCTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.21, C:0.34, G:0.29, T:0.16
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCGTGTGTGA
Found at i:126067148 original size:25 final size:27
Alignment explanation
Indices: 126067110--126067170 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 27
126067100 TCATAGTATG
*
126067110 AAAACATATTCATAGTATA-ATGTTA-AA
1 AAAACATA-TCATAATATATA-GTTATAA
126067137 AAAACATA-CATAATATATAGTTATAA
1 AAAACATATCATAATATATAGTTATAA
126067163 AAAA-ATAT
1 AAAACATAT
126067171 AATATGTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
25 15 0.50
26 7 0.23
27 8 0.27
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (27 bp):
AAAACATATCATAATATATAGTTATAA
Found at i:126067386 original size:2 final size:2
Alignment explanation
Indices: 126067379--126067411 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
126067369 AAGATATACC
126067379 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
126067412 TAAAGATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:126067496 original size:15 final size:14
Alignment explanation
Indices: 126067478--126067552 Score: 55
Period size: 14 Copynumber: 5.4 Consensus size: 14
126067468 TATATATACG
126067478 TAATATATAAAAATA
1 TAATATATAAAAA-A
126067493 TAATAT-TAAAAAA
1 TAATATATAAAAAA
* * *
126067506 TAATATACATAATA
1 TAATATATAAAAAA
* *
126067520 TAAGAGTAT-TAAAA
1 TAATA-TATAAAAAA
* *
126067534 TAATAAATAATAAA
1 TAATATATAAAAAA
126067548 TAATA
1 TAATA
126067553 AAGAAATAAG
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
13 9 0.19
14 30 0.64
15 8 0.17
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (14 bp):
TAATATATAAAAAA
Found at i:126067532 original size:30 final size:28
Alignment explanation
Indices: 126067495--126067603 Score: 94
Period size: 30 Copynumber: 3.6 Consensus size: 28
126067485 TAAAAATATA
126067495 ATATTAAAAAATAATATACATAATATAAG
1 ATATTAAAAAATAATATACATAATA-AAG
*
126067524 AGTATTAAAATAATAAATAATAAATAATAAAG
1 A-TATTAAAA-AAT-AAT-ATACATAATAAAG
* * *
126067556 AAATAAGTAAAAATAATATACATAAT-AAT
1 ATATTA--AAAAATAATATACATAATAAAG
*
126067585 ATAGTAAGAAAATAATATA
1 ATATTAA-AAAATAATATA
126067604 TTTATAATAA
Statistics
Matches: 65, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
27 1 0.02
28 11 0.17
29 6 0.09
30 16 0.25
31 9 0.14
32 10 0.15
33 12 0.18
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (28 bp):
ATATTAAAAAATAATATACATAATAAAG
Found at i:126067543 original size:7 final size:7
Alignment explanation
Indices: 126067531--126067583 Score: 54
Period size: 7 Copynumber: 7.3 Consensus size: 7
126067521 AAGAGTATTA
126067531 AAATAAT
1 AAATAAT
126067538 AAATAAT
1 AAATAAT
126067545 AAATAAT
1 AAATAAT
*
126067552 AAAGAAAT
1 AAA-TAAT
*
126067560 AAGTAA-
1 AAATAAT
126067566 AAATAAT
1 AAATAAT
126067573 ATACATAAT
1 A-A-ATAAT
126067582 AA
1 AA
126067584 TATAGTAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
6 5 0.13
7 20 0.53
8 7 0.18
9 6 0.16
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (7 bp):
AAATAAT
Found at i:126067687 original size:12 final size:12
Alignment explanation
Indices: 126067672--126067788 Score: 59
Period size: 12 Copynumber: 9.7 Consensus size: 12
126067662 TAATAGTGAA
126067672 AATAATAAATAT
1 AATAATAAATAT
*
126067684 AATAATAGAA-AC
1 AATAATA-AATAT
* *
126067696 GATAAT-ACTAT
1 AATAATAAATAT
126067707 -ATAA-AAAT-T
1 AATAATAAATAT
*
126067716 ATATATATACATAT
1 A-ATA-ATAAATAT
126067730 -ATAATAAAATAT
1 AATAAT-AAATAT
*
126067742 ATATACT-AATATT
1 A-ATAATAAATA-T
126067755 AATAATAAATAT
1 AATAATAAATAT
*
126067767 AATATTATAATACT
1 AATAATA-AATA-T
126067781 AATAATAA
1 AATAATAA
126067789 TAATATGAAA
Statistics
Matches: 79, Mismatches: 11, Indels: 29
0.66 0.09 0.24
Matches are distributed among these distances:
9 1 0.01
10 7 0.09
11 6 0.08
12 37 0.47
13 16 0.20
14 12 0.15
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:126067725 original size:22 final size:21
Alignment explanation
Indices: 126067700--126067778 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 21
126067690 AGAAACGATA
126067700 ATACTATATAA-AAATTATATAT
1 ATACTATATAATAAA--ATATAT
126067722 ATACATATATAATAAAATATAT
1 ATAC-TATATAATAAAATATAT
* *
126067744 ATACTA-ATATTAATAATAAAT
1 ATACTATATAATAA-AATATAT
*
126067765 ATAATATTATAATA
1 ATACTA-TATAATA
126067779 CTAATAATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
20 6 0.12
21 13 0.27
22 14 0.29
23 12 0.25
24 3 0.06
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (21 bp):
ATACTATATAATAAAATATAT
Found at i:126067759 original size:26 final size:24
Alignment explanation
Indices: 126067697--126067794 Score: 85
Period size: 26 Copynumber: 3.8 Consensus size: 24
126067687 AATAGAAACG
*
126067697 ATAATACTATATAA-AAATTATATAT
1 ATAATA-TA-ATAATAAAATATATAT
126067722 ATACATAT-ATAATAAAATATATAT
1 ATA-ATATAATAATAAAATATATAT
126067746 ACTAATATTAATAAT-AAATATAATATT
1 A-TAATA-TAATAATAAAATAT-ATA-T
126067773 ATAATACTAATAATAATAATAT
1 ATAATA-TAATAATAA-AATAT
126067795 GAAATTAAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 15
0.78 0.03 0.19
Matches are distributed among these distances:
23 4 0.06
24 14 0.23
25 13 0.21
26 23 0.37
27 3 0.05
28 5 0.08
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (24 bp):
ATAATATAATAATAAAATATATAT
Found at i:126067810 original size:29 final size:28
Alignment explanation
Indices: 126067730--126067819 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 28
126067720 ATATACATAT
*
126067730 ATAATAA-AATAT-ATA-TACTAATATTA
1 ATAATAATAATATAATATTA-TAATACTA
126067756 ATAAT-A-AATATAATATTATAATACTA
1 ATAATAATAATATAATATTATAATACTA
126067782 ATAATAATAATATGAA-ATTA-AAGTAACTA
1 ATAATAATAATAT-AATATTATAA-T-ACTA
*
126067811 AAAATAATA
1 ATAATAATA
126067820 TTGTATGCAT
Statistics
Matches: 55, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
25 6 0.11
26 20 0.36
27 5 0.09
28 10 0.18
29 14 0.25
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (28 bp):
ATAATAATAATATAATATTATAATACTA
Found at i:126067881 original size:9 final size:9
Alignment explanation
Indices: 126067862--126067918 Score: 62
Period size: 9 Copynumber: 6.2 Consensus size: 9
126067852 TATATAAAAA
*
126067862 AATAATAAT
1 AATATTAAT
*
126067871 AATATTGAT
1 AATATTAAT
126067880 AATATTAAT
1 AATATTAAT
126067889 AATATTAGA-
1 AATATTA-AT
*
126067898 AATAATAAT
1 AATATTAAT
126067907 AATATTTAAT
1 AATA-TTAAT
126067917 AA
1 AA
126067919 AGAAACAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
8 1 0.03
9 32 0.80
10 7 0.17
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.39
Consensus pattern (9 bp):
AATATTAAT
Found at i:126067883 original size:18 final size:18
Alignment explanation
Indices: 126067861--126067912 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
126067851 ATATATAAAA
126067861 AAATAATAATAATATT-G
1 AAATAATAATAATATTAG
*
126067878 ATAATATTAATAATATTAG
1 A-AATAATAATAATATTAG
126067897 AAATAATAATAATATT
1 AAATAATAATAATATT
126067913 TAATAAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 1 0.03
18 28 0.90
19 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (18 bp):
AAATAATAATAATATTAG
Found at i:126069719 original size:14 final size:14
Alignment explanation
Indices: 126069700--126069735 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
126069690 AGTTGATTTT
126069700 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
126069714 TTTGAAAAGTAGAA
1 TTTGAAAAGCAGAA
*
126069728 ATTGAAAA
1 TTTGAAAA
126069736 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.19, T:0.25
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:126069755 original size:89 final size:88
Alignment explanation
Indices: 126069571--126070140 Score: 414
Period size: 89 Copynumber: 6.7 Consensus size: 88
126069561 TACTCGGCAT
* * * * *
126069571 GTGATCCTGA-GCTCAACTCACTTCTCGCAATATGAGTTG-TCTCTTT-AAAATAGACATT-AAA
1 GTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAA
* * *
126069632 AACAAAAATTGAAAATACATCAGC
65 AATAGAAATTGAAAATACCTCAGC
* *
126069656 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAATTTGAAA
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CAGAAATTGAAA
*
126069721 AGTAGAAATTGAAAATACCTCAGC
65 AATAGAAATTGAAAATACCTCAGC
* * *
126069745 GTGCCCTGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTTTGAAAAGTAGAAATTG
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAA-CAGAAATTG
* * *
126069810 AAAAACAGAAATTGAAAATATCTCGGC
62 AAAAATAGAAATTGAAAATACCTCAGC
* * *
126069837 GTGTGACCTGA-GCTCAACTCACTTCTCGCAATACGAGTTGACTTTTTTT-AAAA-A-AAAAT-A
1 --GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAACAGAAATTGA
** * * ** ** *
126069897 GGAATTGAAAAT--ACCT-CAGC-GT
63 AAAATAGAAATTGAAAATACCTCAGC
* * *
126069919 GTGACCTGAGGCTCAACTTACCTCTCCCAATATGAGTTGA--TTTTTG-AAACATAAATTG----
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA
** ** *
126069977 --A-AAA-T--ACCT-CGGCA-T
66 ATAGAAATTGAAAATACCTCAGC
* * *
126069992 GTGACCCGAGGATCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCATAAATTGAAA
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-CAGAAATTGAAA
*
126070055 AATGGAAATTGAAAATACCTCAGC
65 AATAGAAATTGAAAATACCTCAGC
* * * *
126070079 GTGTCCTAAGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTG-AAACATAAATTGAAAA
1 GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA
126070141 TACCTCGGCA
Statistics
Matches: 397, Mismatches: 58, Indels: 60
0.77 0.11 0.12
Matches are distributed among these distances:
73 51 0.13
74 6 0.02
75 9 0.02
78 8 0.02
79 1 0.00
80 13 0.03
81 26 0.07
82 4 0.01
83 2 0.01
84 7 0.02
85 46 0.12
86 19 0.05
87 49 0.12
88 6 0.02
89 61 0.15
90 4 0.01
91 7 0.02
92 43 0.11
93 27 0.07
94 8 0.02
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (88 bp):
GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA
ATAGAAATTGAAAATACCTCAGC
Found at i:126069929 original size:174 final size:173
Alignment explanation
Indices: 126069570--126070575 Score: 479
Period size: 160 Copynumber: 6.3 Consensus size: 173
126069560 TTACTCGGCA
* * *
126069570 TGTGATCCTGA-GCTCAACTCACTTCTCGCAATATGAGTTG----TCTCTTTAAAATAGACATTA
1 TGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCTTTAAAATAGAAATTA
*
126069630 AAAACAAAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
65 AAAACAAAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG
126069695 ATTTTTTTGAAAAGCAGAATTTGAAAAGTAGAAATTGAAAATACCTCAGC
130 ATTTTTTT--AAA-CAGAA--T-AAAAGTAGAAATTGAAAATACCTCAGC
* * *
126069745 -GTGCCCTGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTTTGAAAAGTAGAAATT
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCTTT-AAAA-TAGAAATT
* * *
126069809 GAAAAACAGAAATTGAAAATATC-TCGGCGTGTGACCTGA-GCTCAACTCACTTCTCGCAATACG
64 -AAAAACAAAAATTGAAAATA-CATCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACG
*
126069872 AGTTGACTTTTTTT-AA-A-AA-AAAA-TAGGAATTGAAAATACCTCAGC
125 AGTTGA-TTTTTTTAAACAGAATAAAAGTAGAAATTGAAAATACCTCAGC
* * *
126069917 GTGTGACCTGAGGCTCAACTTACCTCTCCCAATATGAGTTGA---TTT-TTGAAACAT--AAATT
1 -TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCTTTAAA-ATAGAAATT
* ** ** * * * * *
126069976 ------GAAAA-T--ACCT-CGGCA-TGTGACCCGAGGATCAACTCACCTCTCGCAATATGAGTT
64 AAAAACAAAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTT
** * * *
126070030 GATTTTTGAAAAGCATAAATTGAAAAATGGAAATTGAAAATACCTCAGC
129 GATTTTTTTAAA-CA-GAA-T-AAAAGTAGAAATTGAAAATACCTCAGC
* * * *
126070079 -GTGTCCTAAGGCTCAACTCACCTCTCACAATATGAGTTGA---TTT-TTGAAACAT--AAATT-
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCTTTAAA-ATAGAAATTA
* ** ** * * * *
126070136 -----GAAAA-T--ACCT-CGGCA-TGTGACCCGAGGCTCAACTCGCCTCTCGCAATACGAGTTG
65 AAAACAAAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG
* * *
126070191 A--TTTTT-----G-A-CAAA-CAGAAATTGAAATTACCTCAGC
130 ATTTTTTTAAACAGAATAAAAGTAGAAATTGAAAATACCTCAGC
* * *
126070225 -GTGTCCTGAGGCTCAACTCACTTCTTGCAATATGAGTTGA--TTTTC-TT----T-G-------
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCTTTAAAATAGAAATTAA
* * * * *
126070274 AAACATAAATTGAAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCG
66 AAACAAAAATTG-AAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTG
*
126070339 A--TTTTT-----G-A-AAAA-CAGAAATTGAAAATACCTCAGC
130 ATTTTTTTAAACAGAATAAAAGTAGAAATTGAAAATACCTCAGC
* *
126070373 -GTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTT-TTGAAACAT--AAATTA
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCTTTAAA-ATAGAAATT-
* * * * * *
126070432 AAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG-GTC
64 AAAAACAAAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTT
* *
126070496 GA--TTTTT-----G-A-AAAA-CAGAAATTGAAAAAACCTCAGC
129 GATTTTTTTAAACAGAATAAAAGTAGAAATTGAAAATACCTCAGC
* * *
126070531 -GTGTCCTAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
126070576 GAAACAGAAA
Statistics
Matches: 695, Mismatches: 81, Indels: 125
0.77 0.09 0.14
Matches are distributed among these distances:
142 4 0.01
143 1 0.00
146 57 0.08
147 10 0.01
148 106 0.15
150 1 0.00
153 10 0.01
154 29 0.04
155 4 0.01
156 2 0.00
157 2 0.00
158 78 0.11
159 45 0.06
160 122 0.18
161 4 0.01
162 20 0.03
167 5 0.01
169 4 0.01
170 3 0.00
171 3 0.00
172 21 0.03
173 9 0.01
174 66 0.09
177 2 0.00
178 6 0.01
179 4 0.01
180 9 0.01
181 27 0.04
182 29 0.04
183 12 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (173 bp):
TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTCTTTAAAATAGAAATTAA
AAACAAAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA
TTTTTTTAAACAGAATAAAAGTAGAAATTGAAAATACCTCAGC
Found at i:126070023 original size:73 final size:72
Alignment explanation
Indices: 126069812--126070435 Score: 540
Period size: 73 Copynumber: 8.2 Consensus size: 72
126069802 AGAAATTGAA
* * * * *
126069812 AAACAGAAATTGAAAATATCTCGGCGTGTGACCTGA-GCTCAACTCACTTCTCGCAATACGAGTT
1 AAACATAAATTGAAAATACCTCAGC-TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
126069876 GACTTTTTTTAAAA
65 GA---TTTTT---G
* * *
126069890 AAAAATAGGAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTTACCTCTCCCAATATGAG
1 AAACATA--AATTGAAAATACCTCAGC-TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
126069955 TTGATTTTTG
63 TTGATTTTTG
* * *
126069965 AAACATAAATTGAAAATACCTCGGCATGTGACCCGAGGATCAACTCACCTCTCGCAATATGAGTT
1 AAACATAAATTGAAAATACCTCAGC-TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
126070030 GATTTTTG
65 GATTTTTG
** * *** * *
126070038 AAAAGCATAAATTGAAAAATGGAAAT-TGAAAAT-ACCTCAGCGTGTCCTAAGGCTCAACTCACC
1 -AAA-CATAAATTG-AAAAT--ACCTCAG-CTGTGACCT--GAG-G--CT----C-AA-CTCACC
*
126070101 TCTCACAATATGAGTTGATTTTTG
49 TCTCGCAATATGAGTTGATTTTTG
* * * *
126070125 AAACATAAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCGCCTCTCGCAATACGAGTT
1 AAACATAAATTGAAAATACCTCAGC-TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
126070190 GATTTTTG
65 GATTTTTG
* * * * *
126070198 ACAAACAGAAATTGAAATTACCTCAGC-GTGTCCTGAGGCTCAACTCACTTCTTGCAATATGAGT
1 --AAACATAAATTGAAAATACCTCAGCTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
126070262 TGATTTTCTTTG
64 TGA--TT-TTTG
* * *
126070274 AAACATAAATTGAAAAATACCTCAGC-GTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTC
1 AAACATAAATTG-AAAATACCTCAGCTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
126070338 GATTTTTG
65 GATTTTTG
* *
126070346 AAAAACAGAAATTGAAAATACCTCAGC-GTGACCTGAGGCTCAACTCACCTCTCACAATATGAGT
1 --AAACATAAATTGAAAATACCTCAGCTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
126070410 TGATTTTTTG
64 TGA-TTTTTG
*
126070420 AAACATAAATTAAAAA
1 AAACATAAATTGAAAA
126070436 ACAAAAACTG
Statistics
Matches: 453, Mismatches: 61, Indels: 70
0.78 0.10 0.12
Matches are distributed among these distances:
72 18 0.04
73 172 0.38
74 32 0.07
75 88 0.19
76 12 0.03
77 2 0.00
78 14 0.03
79 3 0.01
80 27 0.06
81 28 0.06
82 4 0.01
83 2 0.00
84 8 0.02
85 10 0.02
86 4 0.01
87 29 0.06
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (72 bp):
AAACATAAATTGAAAATACCTCAGCTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTG
Found at i:126070117 original size:87 final size:86
Alignment explanation
Indices: 126069971--126070140 Score: 252
Period size: 87 Copynumber: 2.0 Consensus size: 86
126069961 TTTGAAACAT
* * *
126069971 AAATTGAAAATACCTCGGCATGTGACCCGAGGATCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCA-GTGACCCAAGGATCAACTCACCTCTCACAATATGAGTTGATTTT
126070036 TGAAAAGCATAAATTGAAAAATGG
65 TG-AAA-CATAAATTGAAAAATGG
* * *
126070060 AAATTGAAAATACCTCAGC-GTGTCCTAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCAGTGACCCAAGGATCAACTCACCTCTCACAATATGAGTTGATTTTT
126070124 GAAACATAAATTGAAAA
66 GAAACATAAATTGAAAA
126070141 TACCTCGGCA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
85 13 0.17
86 3 0.04
87 41 0.55
89 18 0.24
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (86 bp):
AAATTGAAAATACCTCAGCAGTGACCCAAGGATCAACTCACCTCTCACAATATGAGTTGATTTTT
GAAACATAAATTGAAAAATGG
Found at i:126070361 original size:148 final size:146
Alignment explanation
Indices: 126070049--126070593 Score: 688
Period size: 148 Copynumber: 3.7 Consensus size: 146
126070039 AAAGCATAAA
**
126070049 TTGAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCACAATATGA
* * *
126070114 GTTGA-TTTTTGAAACATAAATTG-AAAATACCTCGGCATGTGACCCGAGGCTCAACTCGCCTCT
66 GTTGATTTTTTGAAACATAAATTGAAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCT
* *
126070177 CGCAATACGAGTTGATTT
129 CGCAATATGAGTCGATTT
* * * * **
126070195 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCACAATATGA
* *
126070260 GTTGATTTTCTTTGAAACATAAATTGAAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCT
66 GTTGA-TTT-TTTGAAACATAAATTGAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCT
126070325 CGCAATATGAGTCGATTT
129 CGCAATATGAGTCGATTT
* *
126070343 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCACAATATGA
* *
126070408 GTTGATTTTTTGAAACATAAATTAAAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTC
66 GTTGATTTTTTGAAACATAAATT---------GAA---AA-ATACCTCAGCGTGACCTGAGGCTC
126070473 AACTCACCTCTCGCAATATG-GTCGATTT
118 AACTCACCTCTCGCAATATGAGTCGATTT
* **
126070501 TTGAAAAACAGAAATTGAAAAAACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCACAATATGA
*
126070566 GTTGA-TTTTTGAAACAGAAA-T-AAAAATA
66 GTTGATTTTTTGAAACATAAATTGAAAAATA
126070594 TCAGAATACC
Statistics
Matches: 352, Mismatches: 30, Indels: 38
0.84 0.07 0.09
Matches are distributed among these distances:
142 3 0.01
143 2 0.01
146 79 0.22
147 3 0.01
148 103 0.29
149 16 0.05
150 12 0.03
155 2 0.01
156 1 0.00
157 14 0.04
158 75 0.21
159 42 0.12
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (146 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTTTGAAACATAAATTGAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCG
CAATATGAGTCGATTT
Found at i:126070491 original size:86 final size:86
Alignment explanation
Indices: 126070346--126070524 Score: 254
Period size: 86 Copynumber: 2.1 Consensus size: 86
126070336 TCGATTTTTG
* * *
126070346 AAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTT
1 AAAAACAAAAACTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCACAATATG-GTC
*
126070411 GATTTTTTG-AAACATAAATT-A
65 GA-TTTTTGAAAACAGAAATTGA
* * *
126070432 AAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGGTCG
1 AAAAACAAAAACTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGGTCG
126070497 ATTTTTGAAAAACAGAAATTGA
66 ATTTTTG-AAAACAGAAATTGA
126070519 AAAAAC
1 AAAAAC
126070525 CTCAGCGTGT
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
84 6 0.07
85 4 0.05
86 66 0.80
87 7 0.08
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (86 bp):
AAAAACAAAAACTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGGTCG
ATTTTTGAAAACAGAAATTGA
Found at i:126070549 original size:72 final size:73
Alignment explanation
Indices: 126070432--126070586 Score: 217
Period size: 72 Copynumber: 2.2 Consensus size: 73
126070422 ACATAAATTA
* * * * *
126070432 AAAAACAAAAACTGAACATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG-GTC
1 AAAAACAGAAATTGAAAAAACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTC
126070496 GATTTTTG
66 GATTTTTG
* * *
126070504 AAAAACAGAAATTGAAAAAACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAAAACAGAAATTGAAAAAACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTC
126070569 GATTTTTG
66 GATTTTTG
126070577 --AAACAGAAAT
1 AAAAACAGAAAT
126070587 AAAAATATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
71 10 0.14
72 54 0.73
73 10 0.14
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (73 bp):
AAAAACAGAAATTGAAAAAACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTC
GATTTTTG
Found at i:126071259 original size:3 final size:3
Alignment explanation
Indices: 126071251--126071311 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
126071241 TTCATCTTGA
126071251 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
126071299 TCT TCT TCT TCT T
1 TCT TCT TCT TCT T
126071312 TTTTAAGGCG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:126072864 original size:46 final size:46
Alignment explanation
Indices: 126072713--126073256 Score: 811
Period size: 46 Copynumber: 11.8 Consensus size: 46
126072703 TGATGTCATA
* * * * ** * *
126072713 GTATCTTTCAACTATGGTTTTACTCGTTTTTTGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
** * *
126072759 GTATCTTTCAACCATGGTCTTATTCATTTTCCCT-TCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACA-TTT-CATATCAGGTTGCCATG
** *
126072806 GTATCTTTCAACCATGGTCTTACTTATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
* ** *
126072852 GTATCTTTCAACCATGGCCTTATGCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
126072898 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
126072944 GTATCTTTCAACCATGGTCTTACACATTCCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
* *
126072990 GTATCTTTCAACCATGGTCTTACACATTCCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
126073036 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
126073082 GTATCTTTCAACCATTGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
126073128 GTATCTTTCAACCATGGTCTTACACATTCCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
126073174 ATATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
126073220 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAG
126073257 AGAACACACT
Statistics
Matches: 464, Mismatches: 31, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
45 2 0.00
46 421 0.91
47 40 0.09
48 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
Found at i:126076132 original size:9 final size:9
Alignment explanation
Indices: 126076118--126076146 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
126076108 ACCTCTCTAT
126076118 TTTCTTTTC
1 TTTCTTTTC
126076127 TTTCTTTTC
1 TTTCTTTTC
126076136 TTTC-TTTC
1 TTTCTTTTC
126076144 TTT
1 TTT
126076147 TTTGCTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.35
9 13 0.65
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:126076741 original size:1 final size:1
Alignment explanation
Indices: 126076735--126076787 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
126076725 TTGATCTCTC
* * * * * *
126076735 TTTTTTTATTTTTTTTGTTTTTTTGTTTTGTTTTTTTTTGTTTTTTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
126076788 CATGACTGTC
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.02, C:0.02, G:0.08, T:0.89
Consensus pattern (1 bp):
T
Found at i:126076748 original size:8 final size:8
Alignment explanation
Indices: 126076744--126076781 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
126076734 CTTTTTTTAT
126076744 TTTTTTTG
1 TTTTTTTG
126076752 TTTTTTTG
1 TTTTTTTG
*
126076760 TTTTGTT-
1 TTTTTTTG
126076767 TTTTTTTG
1 TTTTTTTG
126076775 TTTTTTT
1 TTTTTTT
126076782 TCTTTTCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (8 bp):
TTTTTTTG
Found at i:126076750 original size:10 final size:10
Alignment explanation
Indices: 126076735--126076782 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
126076725 TTGATCTCTC
*
126076735 TTTTTTTATT
1 TTTTTTTGTT
*
126076745 TTTTTTGTTTT
1 TTTTTT-TGTT
126076756 TTTGTTTTGTT
1 TTT-TTTTGTT
126076767 TTTTTTTGTT
1 TTTTTTTGTT
126076777 TTTTTT
1 TTTTTT
126076783 CTTTTCATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 19 0.56
11 12 0.35
12 3 0.09
ACGTcount: A:0.02, C:0.00, G:0.08, T:0.90
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:126076782 original size:24 final size:23
Alignment explanation
Indices: 126076743--126076787 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
126076733 TCTTTTTTTA
*
126076743 TTTTTTTTGTTTTTTTGTTTTGT
1 TTTTTTTTGTTTTTTTCTTTTGT
126076766 TTTTTTTTGTTTTTTTTCTTTT
1 TTTTTTTTG-TTTTTTTCTTTT
126076788 CATGACTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (23 bp):
TTTTTTTTGTTTTTTTCTTTTGT
Found at i:126082087 original size:19 final size:19
Alignment explanation
Indices: 126082063--126082149 Score: 133
Period size: 19 Copynumber: 4.7 Consensus size: 19
126082053 TCATTTCTTC
*
126082063 AAGATTGCATATCATATCA
1 AAGATTGCATATCATATCT
*
126082082 AAGATTACATATCATATCT
1 AAGATTGCATATCATATCT
126082101 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCT
*
126082118 AAGATTGTATATCATATCT
1 AAGATTGCATATCATATCT
126082137 AAGATTGCATATC
1 AAGATTGCATATC
126082150 CTTAAAGATT
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
17 17 0.27
19 45 0.73
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:126082114 original size:36 final size:37
Alignment explanation
Indices: 126082063--126082149 Score: 122
Period size: 36 Copynumber: 2.3 Consensus size: 37
126082053 TCATTTCTTC
126082063 AAGATTGCATATCATATCAAAGATTACATATCATATCT
1 AAGATTG-ATATCATATCAAAGATTACATATCATATCT
* **
126082101 AAGATTG-TATCATATCTAAGATTGTATATCATATCT
1 AAGATTGATATCATATCAAAGATTACATATCATATCT
126082137 AAGATTGCATATC
1 AAGATTG-ATATC
126082150 CTTAAAGATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
36 33 0.75
38 11 0.25
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (37 bp):
AAGATTGATATCATATCAAAGATTACATATCATATCT
Done.