Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 415 of 425
Found at i:126082158 original size:36 final size:36
Alignment explanation
Indices: 126082063--126082160 Score: 103
Period size: 36 Copynumber: 2.7 Consensus size: 36
126082053 TCATTTCTTC
*
126082063 AAGATTGCATATCATATCAAAGATTACATATCATATCT
1 AAGATTGCATATCCT-T-AAAGATTACATATCATATCT
**
126082101 AAGATTGTATCATAT-C-T-AAGATTGTATATCATATCT
1 AAGATTG---CATATCCTTAAAGATTACATATCATATCT
126082137 AAGATTGCATATCCTTAAAGATTA
1 AAGATTGCATATCCTTAAAGATTA
126082161 TATTTTCATA
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
33 5 0.10
34 1 0.02
35 1 0.02
36 30 0.60
38 8 0.16
41 5 0.10
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (36 bp):
AAGATTGCATATCCTTAAAGATTACATATCATATCT
Found at i:126082523 original size:45 final size:45
Alignment explanation
Indices: 126082468--126082579 Score: 172
Period size: 45 Copynumber: 2.5 Consensus size: 45
126082458 GGAAGACAAT
*
126082468 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
126082513 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
126082558 ATTTGCT-TCTTCAATCTGCTCC
1 ATCTGCTATCTTCGATCTGCTCC
126082580 TTGCAAACTC
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 14 0.23
45 47 0.77
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.33
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:126083005 original size:205 final size:205
Alignment explanation
Indices: 126082653--126083367 Score: 1207
Period size: 205 Copynumber: 3.5 Consensus size: 205
126082643 AAATCTGTTT
* * * *
126082653 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTTAACATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
**
126082718 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
126082783 GGATCTGCTTCAGTATAAACATCTGAAAGTTGGATCTGCTATGTGTCTGCCCTCCGTCAAAGTGG
131 GGATCTACTTCAGTATAAACATCTGAAAGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
126082848 AGATGCCAGA
196 AGATGCCAGA
126082858 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
126082923 GTGAAAGCCAAATCAGCTCTGTCTTCAATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
126082988 GGATCTACTTCAGTATAAACATCTG-AAGTTTGGATCTGCTATGTGTCTGCCCTCTGTCGAAGTG
131 GGATCTACTTCAGTATAAACATCTGAAAG-TTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTG
*
126083052 GAGATGCTAGA
195 GAGATGCCAGA
*
126083063 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGTTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* *
126083128 GTGAAAGCCAAATCAGCTCTGTCTTCAATTTGCTCCTTGTAAGCAAAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
126083193 GGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTGCCCTCCATTGAAGCGG
131 GGATCTACTTCAGTATAAACATCTGAAAGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
*
126083258 AGATGCCAAA
196 AGATGCCAGA
* *
126083268 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* *
126083333 GTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTC
66 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTC
126083368 TCCGCCAATA
Statistics
Matches: 482, Mismatches: 26, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
204 3 0.01
205 477 0.99
206 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTATAAACATCTGAAAGTTGGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGG
AGATGCCAGA
Found at i:126083405 original size:44 final size:44
Alignment explanation
Indices: 126083354--126083446 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 44
126083344 ATCAGCTATG
* **
126083354 TCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGGTA
1 TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTACTA
*
126083398 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTA
1 TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTACTA
126083442 TCTTC
1 TCTTC
126083447 AACTTGTTCC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTACTA
Found at i:126083474 original size:44 final size:44
Alignment explanation
Indices: 126083377--126083833 Score: 335
Period size: 44 Copynumber: 10.4 Consensus size: 44
126083367 CTCCGCCAAT
* * * * * *
126083377 ACAGAGATGCCAAATCTGGTATCTTCGATCTGCTCTCTGA-CAAT
1 ACAGGGATGCCAAATCTGCTATCTTCGATCTGTTCCCT-ATAAAC
* * *
126083421 ACAGAGATGCCAAATCTACTATCTTC-AACTTGTTCCCTATAAAC
1 ACAGGGATGCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAAC
** * * * *
126083465 ACAGGGATGCC--ATGCTGAAATCCTCGATCTGCTTCGCTGTAAGC
1 ACAGGGATGCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAAC
* * * * *
126083509 TCA-GGAGTGTCAGATTTGTTATCTTCGATCTGTTCCCTATAAAC
1 ACAGGGA-TGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAAC
* *
126083553 ACAAGGATGCCAAATCTGCTATCTTC-AACTTGTTCCCTATAAAC
1 ACAGGGATGCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAAC
** * * ** * *
126083597 ACAGGGATGCC--ATGCTGAAATCCTCGATCTACTTTGCTGTAAGC
1 ACAGGGATGCCAAAT-CTGCTATCTTCGATCT-GTTCCCTATAAAC
* * *
126083641 ACA-GGAGTGTCAGATCTGTTATCTTCGATCTGTTCCCTATAAAC
1 ACAGGGA-TGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAAC
*
126083685 ACAGGGATGCCAAATCTGCTATCTTC-AACTTGTTCCCTATAAAC
1 ACAGGGATGCCAAATCTGCTATCTTCGATC-TGTTCCCTATAAAC
* ** * * *
126083729 ACAAGGATGCC--ATGCTGAAATCTTCGATCTGCTTCGCTGTAAGC
1 ACAGGGATGCCAAAT-CTGCTATCTTCGATCTG-TTCCCTATAAAC
* * *
126083773 ACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAAC
1 ACAGGGATGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAAC
126083817 ACAGGGATGCCAAATCT
1 ACAGGGATGCCAAATCT
126083834 TGTTTCTTTG
Statistics
Matches: 318, Mismatches: 72, Indels: 46
0.73 0.17 0.11
Matches are distributed among these distances:
42 6 0.02
43 42 0.13
44 217 0.68
45 47 0.15
46 6 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
ACAGGGATGCCAAATCTGCTATCTTCGATCTGTTCCCTATAAAC
Found at i:126083636 original size:132 final size:132
Alignment explanation
Indices: 126083390--126083833 Score: 728
Period size: 132 Copynumber: 3.4 Consensus size: 132
126083380 GAGATGCCAA
* * * * * * *
126083390 ATCTGGTATCTTCGATCTGCTCTCTGA-CAATACAGAGATGCCAAATCTACTATCTTCAACTTGT
1 ATCTGTTATCTTCGATCTGTTCCCT-ATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGT
*
126083454 TCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCTCAGGAGTGT
65 TCCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGT
126083519 CAG
130 CAG
* *
126083522 ATTTGTTATCTTCGATCTGTTCCCTATAAACACAAGGATGCCAAATCTGCTATCTTCAACTTGTT
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
* *
126083587 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTACTTTGCTGTAAGCACAGGAGTGTC
66 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
126083652 AG
131 AG
126083654 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
* * *
126083719 CCCTATAAACACAAGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATGTC
66 CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
126083784 AG
131 AG
*
126083786 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCT
1 ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCT
126083834 TGTTTCTTTG
Statistics
Matches: 291, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
131 1 0.00
132 290 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
ATCTGTTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
CCCTATAAACACAGGGATGCCATGCTGAAATCCTCGATCTGCTTCGCTGTAAGCACAGGAGTGTC
AG
Found at i:126084699 original size:7 final size:7
Alignment explanation
Indices: 126084687--126084753 Score: 70
Period size: 7 Copynumber: 9.7 Consensus size: 7
126084677 GGCCTCTCTA
126084687 TTTTTCT
1 TTTTTCT
126084694 TTTTTCT
1 TTTTTCT
126084701 TTTTTCTT
1 TTTTTC-T
126084709 TTTTTCT
1 TTTTTCT
*
126084716 TTTTAT-A
1 TTTT-TCT
126084723 TTTTTCT
1 TTTTTCT
126084730 CTTTTTC-
1 -TTTTTCT
126084737 -TTTTCT
1 TTTTTCT
126084743 TTTTT-T
1 TTTTTCT
126084749 TTTTT
1 TTTTT
126084754 GAAATAGAAG
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
5 5 0.10
6 7 0.13
7 26 0.50
8 14 0.27
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:126084704 original size:8 final size:8
Alignment explanation
Indices: 126084687--126084753 Score: 61
Period size: 8 Copynumber: 8.6 Consensus size: 8
126084677 GGCCTCTCTA
126084687 TTTTTC-T
1 TTTTTCTT
126084694 TTTTTC-T
1 TTTTTCTT
126084701 TTTTTCTT
1 TTTTTCTT
126084709 TTTTTCTT
1 TTTTTCTT
* *
126084717 TTTATATT
1 TTTTTCTT
*
126084725 TTTCTCTT
1 TTTTTCTT
126084733 TTTCTT-TT
1 TTT-TTCTT
126084741 CTTTTT-TT
1 -TTTTTCTT
126084749 TTTTT
1 TTTTT
126084754 GAAATAGAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
7 18 0.35
8 30 0.58
9 4 0.08
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:126084713 original size:22 final size:22
Alignment explanation
Indices: 126084687--126084753 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
126084677 GGCCTCTCTA
126084687 TTTTTCTTTTTTCTTTTTTCTT
1 TTTTTCTTTTTTCTTTTTTCTT
* *
126084709 TTTTTCTTTTTAT-ATTTTTCTC
1 TTTTTCTTTTT-TCTTTTTTCTT
126084731 TTTTTC--TTTTCTTTTTT-TT
1 TTTTTCTTTTTTCTTTTTTCTT
126084750 TTTT
1 TTTT
126084754 GAAATAGAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 6 0.15
20 8 0.21
22 24 0.62
23 1 0.03
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (22 bp):
TTTTTCTTTTTTCTTTTTTCTT
Found at i:126091494 original size:19 final size:19
Alignment explanation
Indices: 126091470--126091537 Score: 113
Period size: 19 Copynumber: 3.7 Consensus size: 19
126091460 TCATATTTTC
126091470 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
126091489 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCT
*
126091506 AAGACTGCATATCATATCT
1 AAGATTGCATATCATATCT
126091525 AAGATTGCATATC
1 AAGATTGCATATC
126091538 CTTAAAGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.36
19 29 0.64
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:126092002 original size:30 final size:31
Alignment explanation
Indices: 126091968--126092081 Score: 82
Period size: 30 Copynumber: 3.9 Consensus size: 31
126091958 ACCTATATAT
126091968 ATATATATA-TATTAAAAAATAATATACATA
1 ATATATATAGTATTAAAAAATAATATACATA
* * *
126091998 ATATA-AGAGTATTAAAATAATAA-ATAAAAA
1 ATATATATAGTATTAAAA-AATAATATACATA
* * * *
126092028 ATAAAGA-AATAAGT-AAAAATAATATACATA
1 ATATATATAGT-ATTAAAAAATAATATACATA
*
126092058 ATA-ATATAGTA--AGAAAATAATATA
1 ATATATATAGTATTAAAAAATAATATA
126092082 TTTATAATAA
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
28 11 0.17
29 10 0.15
30 37 0.56
31 8 0.12
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (31 bp):
ATATATATAGTATTAAAAAATAATATACATA
Found at i:126092164 original size:21 final size:21
Alignment explanation
Indices: 126092122--126092178 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
126092112 GTATATACGT
126092122 ATAAT-AATGATAA-AAAAATA
1 ATAATAAAT-ATAATAAAAATA
* *
126092142 ATAGTGAAA-ATAATAAATATA
1 ATAAT-AAATATAATAAAAATA
126092163 ATAATAAATATAATAA
1 ATAATAAATATAATAA
126092179 TAGAAACGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
20 11 0.37
21 17 0.57
22 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (21 bp):
ATAATAAATATAATAAAAATA
Found at i:126092165 original size:12 final size:12
Alignment explanation
Indices: 126092150--126092280 Score: 76
Period size: 12 Copynumber: 10.7 Consensus size: 12
126092140 TAATAGTGAA
126092150 AATAATAAATAT
1 AATAATAAATAT
126092162 AATAATAAATAT
1 AATAATAAATAT
*
126092174 AATAATAGAA-AC
1 AATAATA-AATAT
* *
126092186 GATAAT-ACTAT
1 AATAATAAATAT
126092197 -ATAA-AAAT-T
1 AATAATAAATAT
**
126092206 ATATATATACCTAT
1 A-ATA-ATAAATAT
126092220 ATATAATAAAATAT
1 A-ATAAT-AAATAT
*
126092234 ATATACT-AATATT
1 A-ATAATAAATA-T
126092247 AATAATAAATAT
1 AATAATAAATAT
*
126092259 AATATTATAATACT
1 AATAATA-AATA-T
126092273 AATAATAA
1 AATAATAA
126092281 TAATATGAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
9 1 0.01
10 7 0.08
11 4 0.04
12 41 0.44
13 17 0.18
14 23 0.25
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.35
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:126092251 original size:26 final size:25
Alignment explanation
Indices: 126092150--126092286 Score: 87
Period size: 26 Copynumber: 5.5 Consensus size: 25
126092140 TAATAGTGAA
*
126092150 AATAAT-AAATATA-ATAATAAATAT
1 AATAATAAAATATATATACT-AATAT
*
126092174 AATAATAGAAACGATA-ATACT-ATAT
1 AATAATA-AAA-TATATATACTAATAT
**
126092199 AA-AA-ATTATATATATACCT-ATAT
1 AATAATAAAATATATATA-CTAATAT
126092222 -ATAATAAAATATATATACTAATATT
1 AATAATAAAATATATATACTAATA-T
126092247 AATAAT-AAATATAATATTA-TAATACT
1 AATAATAAAATAT-ATA-TACTAATA-T
126092273 AATAATAATAATAT
1 AATAATAA-AATAT
126092287 GAAATTAAAG
Statistics
Matches: 91, Mismatches: 8, Indels: 24
0.74 0.07 0.20
Matches are distributed among these distances:
21 3 0.03
22 5 0.05
23 11 0.12
24 21 0.23
25 13 0.14
26 23 0.25
27 10 0.11
28 5 0.05
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.36
Consensus pattern (25 bp):
AATAATAAAATATATATACTAATAT
Found at i:126092302 original size:29 final size:28
Alignment explanation
Indices: 126092222--126092311 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 28
126092212 ATACCTATAT
*
126092222 ATAATAA-AATAT-ATA-TACTAATATTA
1 ATAATAATAATATAATATTA-TAATACTA
126092248 ATAAT-A-AATATAATATTATAATACTA
1 ATAATAATAATATAATATTATAATACTA
126092274 ATAATAATAATATGAA-ATTA-AAGTAACTA
1 ATAATAATAATAT-AATATTATAA-T-ACTA
*
126092303 AAAATAATA
1 ATAATAATA
126092312 CCGTATGCAT
Statistics
Matches: 55, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
25 6 0.11
26 20 0.36
27 5 0.09
28 10 0.18
29 14 0.25
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (28 bp):
ATAATAATAATATAATATTATAATACTA
Found at i:126092359 original size:3 final size:3
Alignment explanation
Indices: 126092341--126092399 Score: 50
Period size: 3 Copynumber: 19.7 Consensus size: 3
126092331 AAATATACAT
* * * *
126092341 TAA TATA TAA -AA TAA TAA TAA TAT TGA TAA TAT TAA TAA TAT TAGA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
126092387 -AA TAA TAA TAA TA
1 TAA TAA TAA TAA TA
126092400 TTTAATAAAG
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
2 3 0.07
3 38 0.86
4 3 0.07
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:126092364 original size:18 final size:17
Alignment explanation
Indices: 126092341--126092401 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 17
126092331 AAATATACAT
126092341 TAATATATAAAATAATAA
1 TAATAT-TAAAATAATAA
* *
126092359 TAATATTGATAATATTAA
1 TAATATT-AAAATAATAA
126092377 TAATATTAGAAATAATAA
1 TAATATTA-AAATAATAA
126092395 TAATATT
1 TAATATT
126092402 TAATAAAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
17 2 0.05
18 35 0.95
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
TAATATTAAAATAATAA
Found at i:126094302 original size:20 final size:20
Alignment explanation
Indices: 126094275--126094325 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
126094265 CAAGTCACGT
126094275 AGGTATCGATACTGAAACAA
1 AGGTATCGATACTGAAACAA
* *
126094295 ATGTATCGATATTGAAACAA
1 AGGTATCGATACTGAAACAA
*
126094315 AGGAATCGATA
1 AGGTATCGATA
126094326 TTTCTTTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.24
Consensus pattern (20 bp):
AGGTATCGATACTGAAACAA
Found at i:126095339 original size:25 final size:26
Alignment explanation
Indices: 126095245--126095353 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
126095235 TGATACAGAT
126095245 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126095271 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126095297 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
126095323 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126095348 TGATAA
1 TGATAA
126095354 GAATTTCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 24 0.30
26 57 0.70
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:126096858 original size:26 final size:26
Alignment explanation
Indices: 126096828--126096880 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
126096818 TTTATAGTTT
126096828 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
126096854 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
126096880 T
1 T
126096881 GTATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:126102247 original size:26 final size:26
Alignment explanation
Indices: 126102218--126102327 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
126102208 TGATACAAAT
126102218 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
126102244 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
126102270 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
126102296 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
126102322 TGATAA
1 TGATAA
126102328 GAAATTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:126104080 original size:21 final size:21
Alignment explanation
Indices: 126104054--126104101 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
126104044 ATTCCCCACA
126104054 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
126104075 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
126104096 TTGAGT
1 TGGAGT
126104102 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:126104352 original size:136 final size:136
Alignment explanation
Indices: 126104108--126104392 Score: 543
Period size: 136 Copynumber: 2.1 Consensus size: 136
126104098 GAGTAGTCTC
126104108 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
126104173 ATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 ATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
126104238 CTGTTA
131 CTGTTA
126104244 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
126104309 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 ATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
126104374 CTGTTA
131 CTGTTA
**
126104380 CCTGAATGGGCTT
1 CCCAAATGGGCTT
126104393 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 146 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
ATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:126109889 original size:3 final size:3
Alignment explanation
Indices: 126109881--126109967 Score: 61
Period size: 3 Copynumber: 28.0 Consensus size: 3
126109871 TGGGTAAAAT
* *
126109881 ATA ATA ATA ATA AT- ATA ATA GTA GTA ATA ATA ATA AGGTA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA AT-A ATA
** * *
126109928 ATA ACG GTA ATA GTA ATA ATA AT- ATA TATA AGTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA A-TA ATA ATA
126109968 TAAATGGATA
Statistics
Matches: 67, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
2 4 0.06
3 51 0.76
4 9 0.13
5 3 0.04
ACGTcount: A:0.57, C:0.01, G:0.09, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:126109945 original size:18 final size:16
Alignment explanation
Indices: 126109878--126109949 Score: 68
Period size: 14 Copynumber: 4.8 Consensus size: 16
126109868 TAATGGGTAA
126109878 AATATAATAATAA--T
1 AATATAATAATAAGGT
*
126109892 AATATAATAGT-A-GT
1 AATATAATAATAAGGT
126109906 -A-ATAATAATAAGGT
1 AATATAATAATAAGGT
126109920 AATA-AATAATAACGGT
1 AATATAATAATAA-GGT
126109936 AATAGTAATAATAA
1 AATA-TAATAATAA
126109950 TATATATAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
12 7 0.15
13 3 0.06
14 13 0.27
15 9 0.19
16 8 0.17
18 8 0.17
ACGTcount: A:0.58, C:0.01, G:0.10, T:0.31
Consensus pattern (16 bp):
AATATAATAATAAGGT
Found at i:126109970 original size:12 final size:13
Alignment explanation
Indices: 126109881--126109967 Score: 74
Period size: 15 Copynumber: 6.5 Consensus size: 13
126109871 TGGGTAAAAT
126109881 ATAATAATAA-TA
1 ATAATAATAAGTA
126109893 AT-ATAATAGTAGTA
1 ATAATAATA--AGTA
126109907 ATAATAATAAGGTA
1 ATAATAATAA-GTA
126109921 ATAAATAATAACGGTA
1 AT-AATAATAA--GTA
*
126109937 ATAGTAATAA-TA
1 ATAATAATAAGTA
126109949 AT-ATATATAAGTA
1 ATAATA-ATAAGTA
126109962 ATAATA
1 ATAATA
126109968 TAAATGGATA
Statistics
Matches: 63, Mismatches: 2, Indels: 18
0.76 0.02 0.22
Matches are distributed among these distances:
11 8 0.13
12 10 0.16
13 6 0.10
14 12 0.19
15 21 0.33
16 6 0.10
ACGTcount: A:0.57, C:0.01, G:0.09, T:0.32
Consensus pattern (13 bp):
ATAATAATAAGTA
Found at i:126110136 original size:3 final size:3
Alignment explanation
Indices: 126110117--126110168 Score: 86
Period size: 3 Copynumber: 17.0 Consensus size: 3
126110107 AATATATTTG
*
126110117 TAA TAA CAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
126110163 TAA TAA
1 TAA TAA
126110169 GTTAAATTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:126110606 original size:3 final size:3
Alignment explanation
Indices: 126110600--126110650 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
126110590 ATTAGCAAAT
126110600 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
126110648 TAA
1 TAA
126110651 GCTTAATAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:126116733 original size:11 final size:11
Alignment explanation
Indices: 126116717--126116749 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
126116707 TTTAATAGTG
*
126116717 TTAATTAAATT
1 TTAATTCAATT
126116728 TTAATTCAATT
1 TTAATTCAATT
126116739 TTAATTCAATT
1 TTAATTCAATT
126116750 AATATTGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (11 bp):
TTAATTCAATT
Found at i:126119875 original size:18 final size:18
Alignment explanation
Indices: 126119837--126119875 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
126119827 TACATGCACA
* *
126119837 TATATCTATATATGTAAC
1 TATATATATATATCTAAC
*
126119855 TATATATATATATCTATC
1 TATATATATATATCTAAC
126119873 TAT
1 TAT
126119876 TTATTTTCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (18 bp):
TATATATATATATCTAAC
Found at i:126119917 original size:2 final size:2
Alignment explanation
Indices: 126119905--126119938 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
126119895 TTTGTTCTTT
*
126119905 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126119939 CACTTTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:126121230 original size:131 final size:131
Alignment explanation
Indices: 126120982--126121502 Score: 647
Period size: 131 Copynumber: 4.0 Consensus size: 131
126120972 TAATTATTCA
* * * * *
126120982 TTTAAAAATTCTTTAAGCGAAGGCGATGTTCGATATTTGGCAATTCGCGGAATCGTG-CCTATCG
1 TTTAAAAATTCTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTATCG
*
126121046 TGCTGGGTAGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACTCATGTC
66 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACTCATGTC
126121111 T
131 T
* * * * * **
126121112 TTTAAAAATTCTTTAAACGAAGGCGATGTTTGATTTTTGGCAATTCGCGGAATCGTGCCCTATAA
1 TTTAAAAATTCTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTATCG
* *
126121177 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTTGAATTTCACTCACGT-
66 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACTCATGTC
126121241 T
131 T
* *
126121242 TTCTAAAAACTCTTCAAAACGAAGGTAATATTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAT
1 TT-TAAAAATTCTT-AAAACGAAGGCAATATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAT
* * ** * * * *
126121306 CGTGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCGAATATTCCATTGGGATTTCACTCATG
64 CGTGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACTCATG
126121371 -CT
129 TCT
* * *
126121373 TTTAAAAATTCTCCAAAACGAAGGTAATATTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCT-TAAAACGAAGGCAATATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTATC
* * * ** * * *
126121438 GTGCTGGGTTGCGATCTC-CTGTTTGTTCAAGATAATCGAATATTCCTTTAGAATTTAATTCATG
65 GTGCTGGGTTGCAATTTCTC-GTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACTCATG
126121502 T
129 T
126121503 TCTCCAAATT
Statistics
Matches: 347, Mismatches: 36, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
130 101 0.29
131 218 0.63
132 28 0.08
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTTAAAACGAAGGCAATATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTATCG
TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTAGAATTTCACTCATGTC
T
Found at i:126122321 original size:118 final size:118
Alignment explanation
Indices: 126122158--126122405 Score: 408
Period size: 118 Copynumber: 2.1 Consensus size: 118
126122148 CCAAAGAAAT
126122158 TAATTAGTACATTTTCCAAATACCTTCATTTTCAACATCTTAAATTAATTAGTGTAATCAATTTA
1 TAATTAGTACATTTTCCAAATACCTTCATTTTCAACATCTTAAATTAATTAGTGTAATCAATTTA
*
126122223 GTCCAAAAAATTAGAGTCAAAATCTTAAAAAAC-AAGAAAAATTAATTTTGTTA
66 GTCCAAAAAATTAGAGTCAAAATATTAAAAAACGAA-AAAAATTAATTTTGTTA
*
126122276 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATCTTAAATTAATTAGTGTAATCAATTTA
1 TAATTAGTACATTTTCCAAATACCTTCATTTTCAACATCTTAAATTAATTAGTGTAATCAATTTA
* * * *
126122341 GTCTAAAAAATTAGAGTTAACATATTAAAAAACGGAAAAAAATTAATTTTGTTG
66 GTCCAAAAAATTAGAGTCAAAATATTAAAAAAC-GAAAAAAATTAATTTTGTTA
*
126122395 TAATTAATACA
1 TAATTAGTACA
126122406 ATAAATAGGC
Statistics
Matches: 121, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
118 93 0.77
119 26 0.21
120 2 0.02
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (118 bp):
TAATTAGTACATTTTCCAAATACCTTCATTTTCAACATCTTAAATTAATTAGTGTAATCAATTTA
GTCCAAAAAATTAGAGTCAAAATATTAAAAAACGAAAAAAATTAATTTTGTTA
Found at i:126122428 original size:2 final size:2
Alignment explanation
Indices: 126122421--126122449 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
126122411 TAGGCAGAGT
126122421 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
126122450 GTTTATTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:126123171 original size:13 final size:14
Alignment explanation
Indices: 126123129--126123173 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
126123119 TAATAATGAT
126123129 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
126123144 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
126123157 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
126123170 TAAA
1 TAAA
126123174 ATAAAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:126123251 original size:17 final size:17
Alignment explanation
Indices: 126123229--126123262 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
126123219 GTGAAAGAAA
126123229 GAAAGAAAGAA-AAAAGG
1 GAAAGAAA-AAGAAAAGG
126123246 GAAAGAAAAAGAAAAGG
1 GAAAGAAAAAGAAAAGG
126123263 AAAATTTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAAGAAAAGG
Found at i:126125200 original size:20 final size:20
Alignment explanation
Indices: 126125151--126125203 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
126125141 ACGGCTGCAG
* * *
126125151 CACACGGGCATGTTCCAGGC
1 CACACGGGCGTGTCCCAAGC
126125171 CACACGGGCGTGTCCCAAGC
1 CACACGGGCGTGTCCCAAGC
126125191 CACACGGGCGTGT
1 CACACGGGCGTGT
126125204 GCCTCTATCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.19, C:0.36, G:0.32, T:0.13
Consensus pattern (20 bp):
CACACGGGCGTGTCCCAAGC
Found at i:126125444 original size:44 final size:44
Alignment explanation
Indices: 126125381--126125471 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
126125371 GTTTAAGTCT
* * ** *
126125381 GGTAATATCTCGTAGCCCTATTTCGGTGACGGCGTGGGGTTAGG
1 GGTAATATCTAGTAGCCCTATTCCAATGACGGCATGGGGTTAGG
126125425 GGTAATATCTAGTAGCCCTATTCCAATGACGGCATGGGGTTAGG
1 GGTAATATCTAGTAGCCCTATTCCAATGACGGCATGGGGTTAGG
126125469 GGT
1 GGT
126125472 TGTTACAAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.29
Consensus pattern (44 bp):
GGTAATATCTAGTAGCCCTATTCCAATGACGGCATGGGGTTAGG
Found at i:126128384 original size:27 final size:28
Alignment explanation
Indices: 126128354--126128409 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
126128344 AAATATGTTG
*
126128354 AATAATAATACTTAT-ATCTTTAATAAT
1 AATAATAATACTTATAATATTTAATAAT
126128381 AATAATAATACTTATAATATTTAATAAT
1 AATAATAATACTTATAATATTTAATAAT
126128409 A
1 A
126128410 GTACAATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 15 0.56
28 12 0.44
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (28 bp):
AATAATAATACTTATAATATTTAATAAT
Found at i:126130433 original size:19 final size:22
Alignment explanation
Indices: 126130394--126130433 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
126130384 AGAAACCCAA
126130394 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
126130416 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
126130434 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:126130532 original size:27 final size:27
Alignment explanation
Indices: 126130495--126130661 Score: 239
Period size: 27 Copynumber: 6.2 Consensus size: 27
126130485 AGCATGGCTG
* * *
126130495 CCAGAACAGATA-ATGTGACAGAGTCA
1 CCAGATCAGATATATGTGGCAGAGCCA
126130521 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGAT-CAGATATAT-GTGGCAGAGCCA
*
126130549 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
126130576 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
126130603 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
126130630 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
126130657 CCAGA
1 CCAGA
126130662 ACGCTTCCTC
Statistics
Matches: 132, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
26 5 0.04
27 110 0.83
28 17 0.13
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CCAGATCAGATATATGTGGCAGAGCCA
Found at i:126130554 original size:54 final size:54
Alignment explanation
Indices: 126130495--126130663 Score: 268
Period size: 54 Copynumber: 3.1 Consensus size: 54
126130485 AGCATGGCTG
* * * *
126130495 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
126130549 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
* *
126130603 CCAGATCAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
126130657 CCAGAAC
1 CCAGAAC
126130664 GCTTCCTCCA
Statistics
Matches: 107, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
54 89 0.83
55 18 0.17
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
Found at i:126132319 original size:26 final size:26
Alignment explanation
Indices: 126132283--126132392 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
126132273 CATGAATTTC
126132283 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
126132309 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
126132335 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
126132361 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
126132387 TTATCA
1 TTATCA
126132393 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:126133646 original size:3 final size:3
Alignment explanation
Indices: 126133631--126133919 Score: 137
Period size: 3 Copynumber: 95.7 Consensus size: 3
126133621 TTTCTAATCA
*
126133631 ATT ATT TTT ATT ATT ACTT -TCT ATT ATT A-T ATTT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT A-TT AT-T ATT ATT ATT A-TT ATT ATT ATT ATT
* * * * ** *
126133677 GTT -TT ATT ACT ATT ACT ACT AAC ATA ATAT ATTT ATT -TCT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T A-TT ATT AT-T ATT ATT
* * * * *
126133723 TTCT ATT ATT GTC ATT ATT AAT ATAT ACT ATT ATT ATT ATT ATT ATT
1 AT-T ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT
* * * * * *
126133770 ATT ATT ATT AAT A-T GTT GTT ATT ATT ATT ATT ACT ATT ATC ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
126133817 ATC ATT -TT -TT ATT ACT GTT ACT ATT ATT ATT ATT TTT ACT ATCT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T
* * * * *
126133861 AAT A-T ATT ATT ATT ACCTT TTT ATT ATT ATT ACT ACT ATT -GT ATT
1 ATT ATT ATT ATT ATT A--TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
126133906 ATT ACT ATT ATT AT
1 ATT ATT ATT ATT AT
126133920 ATTTTCATCT
Statistics
Matches: 216, Mismatches: 51, Indels: 38
0.71 0.17 0.12
Matches are distributed among these distances:
2 14 0.06
3 184 0.85
4 15 0.07
5 3 0.01
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:126133890 original size:20 final size:20
Alignment explanation
Indices: 126133751--126133915 Score: 86
Period size: 20 Copynumber: 8.7 Consensus size: 20
126133741 TAATATATAC
*
126133751 TATTATTATTATTATTA-T-
1 TATTATTATTATTACTATTG
* *
126133769 TATTATTATTAATA-TGTTG
1 TATTATTATTATTACTATTG
126133788 TTATTATTATTATTACTA-T-
1 -TATTATTATTATTACTATTG
* *
126133807 TATCACTATTA-T-C-ATT-
1 TATTATTATTATTACTATTG
* * *
126133823 TTTTATTACTGTTACTA-T-
1 TATTATTATTATTACTATTG
*
126133841 TATTATTATTTTTACTATCT-
1 TATTATTATTATTACTAT-TG
* *
126133861 AATATATTATTATTACCT-TTT
1 TAT-TATTATTATTA-CTATTG
*
126133882 TATTATTATTACTACTATTG
1 TATTATTATTATTACTATTG
*
126133902 TATTATTACTATTA
1 TATTATTATTATTA
126133916 TTATATTTTC
Statistics
Matches: 112, Mismatches: 21, Indels: 26
0.70 0.13 0.16
Matches are distributed among these distances:
15 1 0.01
16 8 0.07
17 3 0.03
18 39 0.35
19 3 0.03
20 42 0.38
21 14 0.12
22 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.59
Consensus pattern (20 bp):
TATTATTATTATTACTATTG
Found at i:126133905 original size:17 final size:17
Alignment explanation
Indices: 126133834--126133922 Score: 70
Period size: 17 Copynumber: 4.9 Consensus size: 17
126133824 TTTATTACTG
* *
126133834 TTACTATTATTATTATTT
1 TTACTACTATTA-TATTA
*
126133852 TTACTATCTAATATATTA
1 TTACTA-CTATTATATTA
* *
126133870 TTATTACCTTTTTATTATTA
1 TTACTA-C-TATTA-TATTA
*
126133890 TTACTACTATTGTATTA
1 TTACTACTATTATATTA
*
126133907 TTACTATTATTATATT
1 TTACTACTATTATATT
126133923 TTCATCTATA
Statistics
Matches: 56, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
17 19 0.34
18 19 0.34
19 8 0.14
20 10 0.18
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (17 bp):
TTACTACTATTATATTA
Found at i:126133969 original size:17 final size:17
Alignment explanation
Indices: 126133949--126133981 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
126133939 TTCTTATTAT
126133949 TTATCTAGTT-ATATTTC
1 TTATCTA-TTCATATTTC
126133966 TTATCTATTCATATTT
1 TTATCTATTCATATTT
126133982 TGTTGTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.24, C:0.12, G:0.03, T:0.61
Consensus pattern (17 bp):
TTATCTATTCATATTTC
Found at i:126134088 original size:31 final size:30
Alignment explanation
Indices: 126134053--126134123 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 30
126134043 TTACTATTGC
*
126134053 TATTTTATTATAATCATTATTATTAGCATTA-
1 TATTTTATT-T-ATCACTATTATTAGCATTAT
* *
126134084 TA-TTTATTTATTACTATTATTAGTATTAT
1 TATTTTATTTATCACTATTATTAGCATTAT
126134113 TATTTTATTTA
1 TATTTTATTTA
126134124 GTACTATCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 16 0.46
29 3 0.09
30 14 0.40
31 2 0.06
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (30 bp):
TATTTTATTTATCACTATTATTAGCATTAT
Found at i:126134114 original size:18 final size:18
Alignment explanation
Indices: 126134091--126134140 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
126134081 TTATATTTAT
126134091 TTATTACTATTATTAGTA
1 TTATTACTATTATTAGTA
*
126134109 TTATTA-TTTTATTTAGTA
1 TTATTACTATTA-TTAGTA
* *
126134127 CTATCAC-ATTATTA
1 TTATTACTATTATTA
126134141 TGTTATTCGT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (18 bp):
TTATTACTATTATTAGTA
Found at i:126134191 original size:23 final size:23
Alignment explanation
Indices: 126134165--126134210 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
126134155 TTAATGTACT
*
126134165 ATTATTATT-TCCTATTTATTATA
1 ATTATTATTAACCT-TTTATTATA
126134188 ATTATTATTAACCTTTTATTATA
1 ATTATTATTAACCTTTTATTATA
126134211 TTGCTAGTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (23 bp):
ATTATTATTAACCTTTTATTATA
Found at i:126136066 original size:29 final size:31
Alignment explanation
Indices: 126136034--126136104 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
126136024 TAAATTTCAA
*
126136034 ATAATTGAGTGAT-AAAAT-TATAATTT-TTT
1 ATAATTGAGTGATCAAAATATA-AATTTATTG
* *
126136063 ATAATTAAATGATCAAAATATAAATTTATTG
1 ATAATTGAGTGATCAAAATATAAATTTATTG
126136094 ATAATTGAGTG
1 ATAATTGAGTG
126136105 GTCACGGTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
29 11 0.32
30 10 0.29
31 13 0.38
ACGTcount: A:0.45, C:0.01, G:0.11, T:0.42
Consensus pattern (31 bp):
ATAATTGAGTGATCAAAATATAAATTTATTG
Found at i:126146770 original size:13 final size:13
Alignment explanation
Indices: 126146752--126146778 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
126146742 ATGTGTATTT
126146752 TTCTACTCATTGA
1 TTCTACTCATTGA
126146765 TTCTACTCATTGA
1 TTCTACTCATTGA
126146778 T
1 T
126146779 ATGCACTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.48
Consensus pattern (13 bp):
TTCTACTCATTGA
Found at i:126153043 original size:11 final size:11
Alignment explanation
Indices: 126153027--126153057 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
126153017 CGAACTTCAA
126153027 AGCTCGAATCC
1 AGCTCGAATCC
126153038 AGCTCGAATCC
1 AGCTCGAATCC
126153049 AGCTCGAAT
1 AGCTCGAAT
126153058 TTAGAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.19
Consensus pattern (11 bp):
AGCTCGAATCC
Found at i:126155979 original size:77 final size:77
Alignment explanation
Indices: 126155847--126156000 Score: 281
Period size: 77 Copynumber: 2.0 Consensus size: 77
126155837 AACCAAGCAG
126155847 ACTGAATGTTAAGTGACGTCAGACTCGACCACTTTTGAGTTCTGATTGTCATTACATCGGCTATC
1 ACTGAATGTTAAGTGACGTCAGACTCGACCACTTTTGAGTTCTGATTGTCATTACATCGGCTATC
126155912 CTTATTATTGTT
66 CTTATTATTGTT
* * *
126155924 ACTGAATGTTAAGTGACGTCAGACTTGACCACTTTTGAGTTCTGATTGTCCTTACATCGTCTATC
1 ACTGAATGTTAAGTGACGTCAGACTCGACCACTTTTGAGTTCTGATTGTCATTACATCGGCTATC
126155989 CTTATTATTGTT
66 CTTATTATTGTT
126156001 GATTCTACTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (77 bp):
ACTGAATGTTAAGTGACGTCAGACTCGACCACTTTTGAGTTCTGATTGTCATTACATCGGCTATC
CTTATTATTGTT
Found at i:126157806 original size:12 final size:12
Alignment explanation
Indices: 126157789--126157813 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
126157779 TAAATTAAAT
126157789 AAAAAAATATAA
1 AAAAAAATATAA
126157801 AAAAAAATATAA
1 AAAAAAATATAA
126157813 A
1 A
126157814 TAGATAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAAATATAA
Found at i:126157874 original size:28 final size:30
Alignment explanation
Indices: 126157830--126157900 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 30
126157820 ATAATAATTT
*
126157830 TATTTAAATATAATTAAAT--AA-TATTTAA
1 TATTTAATTATAATTAAATACAATTA-TTAA
*
126157858 TATTTAATTATATTTAAATACAATTATTAA
1 TATTTAATTATAATTAAATACAATTATTAA
*
126157888 TATTTATTTATAA
1 TATTTAATTATAA
126157901 ATCCTCCTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 17 0.47
30 17 0.47
31 2 0.06
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (30 bp):
TATTTAATTATAATTAAATACAATTATTAA
Found at i:126159678 original size:2 final size:2
Alignment explanation
Indices: 126159671--126159704 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
126159661 ACATGCATAC
126159671 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126159705 TGTATTAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126166521 original size:6 final size:6
Alignment explanation
Indices: 126166510--126166544 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
126166500 AAATTATTAA
126166510 AAATAT AAATAT AAATAT AAATAT AAATAT AAATA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATA
126166545 AACAATTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAATAT
Found at i:126171486 original size:15 final size:16
Alignment explanation
Indices: 126171455--126171488 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
126171445 TCGTAAAATC
*
126171455 AATTATTTATATATAA
1 AATTATGTATATATAA
126171471 AATTATGTAT-TATAA
1 AATTATGTATATATAA
126171486 AAT
1 AAT
126171489 GTTAAATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
AATTATGTATATATAA
Found at i:126179677 original size:18 final size:18
Alignment explanation
Indices: 126179654--126179688 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
126179644 ATCTCTTTAA
*
126179654 TTAAAAATAGTTTATTTT
1 TTAAAAAGAGTTTATTTT
*
126179672 TTAAAAAGATTTTATTT
1 TTAAAAAGAGTTTATTT
126179689 AAAAGTAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (18 bp):
TTAAAAAGAGTTTATTTT
Found at i:126180057 original size:18 final size:19
Alignment explanation
Indices: 126180036--126180083 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
126180026 AAAAAAATAT
126180036 AAATATATAAAT-TATT-TA
1 AAAT-TATAAATATATTATA
*
126180054 AAATTCTAAATATATTATAA
1 AAATTATAAATATATTAT-A
126180074 AAATTATAAA
1 AAATTATAAA
126180084 AAAAATTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 6 0.24
18 8 0.32
19 1 0.04
20 10 0.40
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
AAATTATAAATATATTATA
Found at i:126180259 original size:31 final size:31
Alignment explanation
Indices: 126180221--126180300 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 31
126180211 TTTTTGATCT
*
126180221 AATTTAGTACCTGAACTTGACACATTTTCCA
1 AATTTAGTACCTAAACTTGACACATTTTCCA
* * **
126180252 AATTTAGTATCTAAACTTGACACTTTTTCTT
1 AATTTAGTACCTAAACTTGACACATTTTCCA
* *
126180283 AAGTTAGTACTTAAACTT
1 AATTTAGTACCTAAACTT
126180301 TTTGGGGACT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (31 bp):
AATTTAGTACCTAAACTTGACACATTTTCCA
Found at i:126185545 original size:2 final size:2
Alignment explanation
Indices: 126185538--126185568 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
126185528 TTGGTATGTC
126185538 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
126185569 TGTCTTAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:126189756 original size:6 final size:6
Alignment explanation
Indices: 126189745--126189772 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
126189735 GATGATTTTC
126189745 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
126189773 CTATTGGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:126190591 original size:24 final size:24
Alignment explanation
Indices: 126190546--126190614 Score: 59
Period size: 24 Copynumber: 2.8 Consensus size: 24
126190536 ACACAAACAT
* *
126190546 TAAAATAATAT-TAAGATAATTATA
1 TAAAA-AATATATAAAATAATTAAA
*
126190570 TAAAAAATATATAAAATTATTAAA
1 TAAAAAATATATAAAATAATTAAA
* *
126190594 TATTAAAATAATATAATATAA
1 TA-AAAAAT-ATATAAAATAA
126190615 ATATTTAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
23 5 0.14
24 17 0.47
25 5 0.14
26 9 0.25
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.36
Consensus pattern (24 bp):
TAAAAAATATATAAAATAATTAAA
Found at i:126190609 original size:26 final size:26
Alignment explanation
Indices: 126190544--126190614 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
126190534 TAACACAAAC
* *
126190544 ATTAAAATAATATTAAGATAATTATAT
1 ATTAAAATAATA-TAAAATAATTAAAT
* *
126190571 A-AAAAAT-ATATAAAATTATTAAAT
1 ATTAAAATAATATAAAATAATTAAAT
*
126190595 ATTAAAATAATATAATATAA
1 ATTAAAATAATATAAAATAA
126190615 ATATTTAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
24 12 0.34
25 8 0.23
26 14 0.40
27 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (26 bp):
ATTAAAATAATATAAAATAATTAAAT
Found at i:126192919 original size:2 final size:2
Alignment explanation
Indices: 126192912--126192959 Score: 69
Period size: 2 Copynumber: 24.0 Consensus size: 2
126192902 TAAACTCAAA
* * *
126192912 AG AG AG AG AG AA AG AG AG AT AG AG AG AG AG GG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
126192954 AG AG AG
1 AG AG AG
126192960 GACCCAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02
Consensus pattern (2 bp):
AG
Found at i:126196061 original size:21 final size:20
Alignment explanation
Indices: 126196010--126196061 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
126196000 TTTTATGATT
126196010 TTTTATACTTTTTATAATATA
1 TTTTATA-TTTTTATAATATA
*
126196031 TTTGTA-ATTTTTTTAATAATA
1 TTT-TATATTTTTATAAT-ATA
126196052 TTTTATATTT
1 TTTTATATTT
126196062 CCTATAGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 11 0.41
21 14 0.52
22 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTATATTTTTATAATATA
Found at i:126196111 original size:37 final size:37
Alignment explanation
Indices: 126196041--126196122 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
126196031 TTTGTAATTT
* *
126196041 TTTTAATAATATTTTATATTTCCTATAGTTTTTAAATA
1 TTTTAATAATATTTTAAATTTCATATAGTTTTTAAA-A
*
126196079 TTTTAAT-ATATTTTAAATTT-ATATATTCTTTTAAAA
1 TTTTAATAATATTTTAAATTTCATATAGT-TTTTAAAA
126196115 TTTATAAT
1 TTT-TAAT
126196123 TACTTTTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
36 9 0.23
37 23 0.59
38 7 0.18
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.59
Consensus pattern (37 bp):
TTTTAATAATATTTTAAATTTCATATAGTTTTTAAAA
Found at i:126196112 original size:18 final size:19
Alignment explanation
Indices: 126196089--126196134 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
126196079 TTTTAATATA
126196089 TTTTAAATTTATATATT-CT
1 TTTTAAATTTATA-ATTACT
*
126196108 TTTAAAATTTATAATTACT
1 TTTTAAATTTATAATTACT
126196127 TTTTAAAT
1 TTTTAAAT
126196135 AAAATTTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 3 0.12
19 21 0.88
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTAAATTTATAATTACT
Found at i:126196115 original size:19 final size:18
Alignment explanation
Indices: 126196070--126196134 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 18
126196060 TTCCTATAGT
*
126196070 TTTTAAATATTTTAATATA-
1 TTTTAAAT-TTATAAT-TAC
126196089 TTTTAAATTTATATATT-C
1 TTTTAAATTTATA-ATTAC
126196107 TTTTAAAATTTATAATTAC
1 TTTT-AAATTTATAATTAC
126196126 TTTTTAAAT
1 -TTTTAAAT
126196135 AAAATTTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
18 12 0.30
19 24 0.60
20 4 0.10
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTAAATTTATAATTAC
Found at i:126208820 original size:19 final size:19
Alignment explanation
Indices: 126208774--126208822 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
126208764 TATCATCCAC
*
126208774 TTGCGAAAATAAATATTTA
1 TTGCAAAAATAAATATTTA
* * * *
126208793 ATGCTAAAATAATTATTTT
1 TTGCAAAAATAAATATTTA
126208812 TTGCAAAAATA
1 TTGCAAAAATA
126208823 CATTTTAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (19 bp):
TTGCAAAAATAAATATTTA
Found at i:126209974 original size:14 final size:15
Alignment explanation
Indices: 126209955--126209983 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
126209945 AAAAATATGC
126209955 AAATAA-ATTTTAAA
1 AAATAAGATTTTAAA
126209969 AAATAAGATTTTAAA
1 AAATAAGATTTTAAA
126209984 TTCAGGGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
AAATAAGATTTTAAA
Found at i:126210136 original size:2 final size:2
Alignment explanation
Indices: 126210129--126210158 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
126210119 TCTCTTTTAG
126210129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126210159 GAACTCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126210274 original size:25 final size:28
Alignment explanation
Indices: 126210218--126210278 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
126210208 TAATTAGGGT
*
126210218 ATTAATTATAATTTTTTTATAACTATAA
1 ATTAATTATAATTTTTTTATAAATATAA
*
126210246 ATTAATTAT-ATTTTTTTA-AAATAT-G
1 ATTAATTATAATTTTTTTATAAATATAA
126210271 ATTAATTA
1 ATTAATTA
126210279 ATAAAGTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 8 0.26
26 5 0.16
27 9 0.29
28 9 0.29
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (28 bp):
ATTAATTATAATTTTTTTATAAATATAA
Found at i:126211192 original size:3 final size:3
Alignment explanation
Indices: 126211184--126211224 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
126211174 ATATATATAC
126211184 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
126211225 ATAAAACCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:126214012 original size:8 final size:8
Alignment explanation
Indices: 126213986--126214019 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
126213976 TGTCAGATAT
126213986 TTTTATAA
1 TTTTATAA
*
126213994 TTTTTTGAA
1 TTTTAT-AA
126214003 TTTTATAA
1 TTTTATAA
126214011 TTTTATAA
1 TTTTATAA
126214019 T
1 T
126214020 ATTTTTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (8 bp):
TTTTATAA
Found at i:126214411 original size:21 final size:22
Alignment explanation
Indices: 126214368--126214417 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
126214358 AAATATCAAA
126214368 TATATAATCTTATATTAATATT
1 TATATAATCTTATATTAATATT
*
126214390 TATAT-ATTTTATAATTAA-ATT
1 TATATAATCTTAT-ATTAATATT
*
126214411 TAAATAA
1 TATATAA
126214418 AAATATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATAATCTTATATTAATATT
Found at i:126214775 original size:18 final size:18
Alignment explanation
Indices: 126214734--126214769 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
126214724 TAATCATATC
*
126214734 TATTTTTATTATTTTCTA
1 TATTTTTATTATTTCCTA
126214752 TATTTTTATTATCTTCCT
1 TATTTTTATTAT-TTCCT
126214770 TTTTTTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.69
Consensus pattern (18 bp):
TATTTTTATTATTTCCTA
Found at i:126216767 original size:2 final size:2
Alignment explanation
Indices: 126216722--126216748 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
126216712 ATTCATCTGA
126216722 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
126216749 CATTTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:126220760 original size:31 final size:31
Alignment explanation
Indices: 126220722--126220784 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
126220712 TATCATGAAT
126220722 TAATCCTTTTCATAAAGAAGCTAAGTGCAAA
1 TAATCCTTTTCATAAAGAAGCTAAGTGCAAA
* *
126220753 TAATCCTTTTTATAACGAAGCTAAGTGCAAA
1 TAATCCTTTTCATAAAGAAGCTAAGTGCAAA
126220784 T
1 T
126220785 TTATTATAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.32
Consensus pattern (31 bp):
TAATCCTTTTCATAAAGAAGCTAAGTGCAAA
Found at i:126220879 original size:14 final size:14
Alignment explanation
Indices: 126220860--126220889 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
126220850 TTAAAAATAT
*
126220860 TTAGAAATTTATCA
1 TTAGAAATTTACCA
126220874 TTAGAAATTTACCA
1 TTAGAAATTTACCA
126220888 TT
1 TT
126220890 GACTCTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (14 bp):
TTAGAAATTTACCA
Found at i:126228243 original size:2 final size:2
Alignment explanation
Indices: 126228236--126228260 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
126228226 TAGTAATTTC
126228236 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
126228261 TTGTAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:126228470 original size:26 final size:26
Alignment explanation
Indices: 126228438--126228487 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
126228428 ATTTTTTTCA
126228438 ATATTGTGAAAGAAGTATATTTATGT
1 ATATTGTGAAAGAAGTATATTTATGT
126228464 ATATTGTGAAAGAAGTATATTTAT
1 ATATTGTGAAAGAAGTATATTTAT
126228488 ATGCTGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (26 bp):
ATATTGTGAAAGAAGTATATTTATGT
Found at i:126233374 original size:42 final size:42
Alignment explanation
Indices: 126233327--126233433 Score: 153
Period size: 42 Copynumber: 2.5 Consensus size: 42
126233317 TATAGTTCAA
*
126233327 CTATGGTCTTACACATCTTCACACAAT-GATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACA-AATCGATGCCATAGCCCAG
* *
126233369 CTATGGTCTTACACATATTCATATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACAAATCGATGCCATAGCCCAG
* *
126233411 CTATGGTCTTACACGTAATCACA
1 CTATGGTCTTACACATATTCACA
126233434 TACCACATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 2 0.03
42 56 0.97
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (42 bp):
CTATGGTCTTACACATATTCACAAATCGATGCCATAGCCCAG
Found at i:126233453 original size:49 final size:48
Alignment explanation
Indices: 126233391--126233516 Score: 166
Period size: 49 Copynumber: 2.6 Consensus size: 48
126233381 ACATATTCAT
126233391 ATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATACCAC
1 ATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATACCAC
* * * *
126233440 ATATCGATGCCATAGCCCAACTATGGTCGTACACGAATCACATATCTC
1 ATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATACCAC
* * *
126233488 A-CT-GATGCCATATCCCAGATATGGTCTTA
1 ATATCGATGCCATAGCCCAGCTATGGTCTTA
126233517 TACAGTAGCA
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
46 22 0.32
47 1 0.01
48 12 0.18
49 33 0.49
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (48 bp):
ATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATACCAC
Found at i:126233620 original size:31 final size:31
Alignment explanation
Indices: 126233585--126233733 Score: 244
Period size: 31 Copynumber: 4.8 Consensus size: 31
126233575 CTTGTCACTT
*
126233585 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
126233616 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
126233647 GTAACCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
126233678 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
126233709 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
126233734 TGTCATTTGT
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 109 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:126233807 original size:50 final size:51
Alignment explanation
Indices: 126233709--126233837 Score: 179
Period size: 50 Copynumber: 2.5 Consensus size: 51
126233699 CACTGATCAG
* * * * *
126233709 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCAAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAACT
* *
126233760 GTAGTCAAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAACT
1 GTAGCCAAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAACT
*
126233810 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCAAAGCTATCACTTATCACTTGT
126233838 TGCCATGGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 45 0.66
51 23 0.34
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCAAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAACT
Found at i:126240887 original size:35 final size:35
Alignment explanation
Indices: 126240838--126240904 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
126240828 TCGTTTTATT
*
126240838 TTTTAAAAATTTTTATAA-ACTTTTGTAATTTTGAA
1 TTTTAAAAATTTTTA-AATACTTTTATAATTTTGAA
*
126240873 TTTTACAAAA-TTTTAAATATTTTTATAATTTT
1 TTTTA-AAAATTTTTAAATACTTTTATAATTTT
126240905 TTAATTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 2 0.07
35 22 0.79
36 4 0.14
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (35 bp):
TTTTAAAAATTTTTAAATACTTTTATAATTTTGAA
Found at i:126249092 original size:15 final size:15
Alignment explanation
Indices: 126249072--126249102 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
126249062 CTGCGATCAT
126249072 CGCTTAATTCGAAGC
1 CGCTTAATTCGAAGC
126249087 CGCTTAATTCGAAGC
1 CGCTTAATTCGAAGC
126249102 C
1 C
126249103 TTCGATTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (15 bp):
CGCTTAATTCGAAGC
Found at i:126252681 original size:30 final size:29
Alignment explanation
Indices: 126252645--126252709 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
126252635 ATAATTTACA
*
126252645 AAAATTGGATC-AAATCAAAATTTCATGTAT
1 AAAATTGGA-CAAAATCAAAA-TTCACGTAT
*
126252675 AAAATTGTACAAAATCAAAATTCACGTAT
1 AAAATTGGACAAAATCAAAATTCACGTAT
*
126252704 ACAATT
1 AAAATT
126252710 AAACATTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (29 bp):
AAAATTGGACAAAATCAAAATTCACGTAT
Found at i:126262016 original size:15 final size:15
Alignment explanation
Indices: 126261996--126262025 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
126261986 CCATTGTGAT
126261996 TGGTTTATACAAAGG
1 TGGTTTATACAAAGG
*
126262011 TGGTTTATAGAAAGG
1 TGGTTTATACAAAGG
126262026 AAGTTAACCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.33
Consensus pattern (15 bp):
TGGTTTATACAAAGG
Found at i:126273843 original size:32 final size:32
Alignment explanation
Indices: 126273802--126273863 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
126273792 AGAATAAACT
126273802 TGAACAAATGAGTGTCTAAATTCAAATATATA
1 TGAACAAATGAGTGTCTAAATTCAAATATATA
*
126273834 TGAACAAATGAGTGTCTATATTCAAATATA
1 TGAACAAATGAGTGTCTAAATTCAAATATA
126273864 ATGGTATAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (32 bp):
TGAACAAATGAGTGTCTAAATTCAAATATATA
Found at i:126274645 original size:14 final size:16
Alignment explanation
Indices: 126274623--126274659 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
126274613 TTTATAAAGA
126274623 TATATTTTA-TTTAAT
1 TATATTTTATTTTAAT
126274638 TA-ATTTTATTTTAAT
1 TATATTTTATTTTAAT
126274653 TATATTT
1 TATATTT
126274660 AAGATTGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 6 0.30
15 10 0.50
16 4 0.20
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATATTTTATTTTAAT
Found at i:126280863 original size:19 final size:19
Alignment explanation
Indices: 126280839--126280887 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 19
126280829 ATAATAGCAT
* *
126280839 AATAGTAAAATGATAATAA
1 AATAGTAAAATAATAAGAA
126280858 AATAGTGAAAAAATAATAAGAA
1 AATAGT---AAAATAATAAGAA
126280880 AATAGTAA
1 AATAGTAA
126280888 CAAAACAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 8 0.32
22 17 0.68
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.22
Consensus pattern (19 bp):
AATAGTAAAATAATAAGAA
Found at i:126282136 original size:22 final size:20
Alignment explanation
Indices: 126282090--126282138 Score: 53
Period size: 25 Copynumber: 2.2 Consensus size: 20
126282080 ATGATTTAAT
126282090 AAAAAATGTAAATTTAATAACTA
1 AAAAAATGTAAATTTAAT---TA
126282113 AAAAATATGATAAATTTAATTA
1 AAAAA-ATG-TAAATTTAATTA
126282135 AAAA
1 AAAA
126282139 CTAAAATAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.25
23 5 0.21
24 3 0.12
25 10 0.42
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (20 bp):
AAAAAATGTAAATTTAATTA
Found at i:126291338 original size:18 final size:17
Alignment explanation
Indices: 126291309--126291349 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
126291299 TGCATGCTAG
*
126291309 TTTTAGTTTTTTATTTT
1 TTTTATTTTTTTATTTT
126291326 TTATTATTTTTTTATTTT
1 TT-TTATTTTTTTATTTT
126291344 TTTTAT
1 TTTTAT
126291350 GGCTATGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (17 bp):
TTTTATTTTTTTATTTT
Found at i:126294169 original size:36 final size:30
Alignment explanation
Indices: 126294096--126294158 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
126294086 GCTCCTATAA
*
126294096 TTGGTGAATACAATATTAATATTCTAAATT
1 TTGGTGAATACAATATCAATATTCTAAATT
126294126 TTGGTGAATACAATATCAATATTCTAAATT
1 TTGGTGAATACAATATCAATATTCTAAATT
126294156 TTG
1 TTG
126294159 TAGCAGGTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (30 bp):
TTGGTGAATACAATATCAATATTCTAAATT
Found at i:126295983 original size:3 final size:3
Alignment explanation
Indices: 126295975--126296006 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
126295965 AGCCTTGCCC
126295975 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
126296007 GTGATTGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:126304300 original size:43 final size:44
Alignment explanation
Indices: 126304245--126304512 Score: 350
Period size: 45 Copynumber: 6.2 Consensus size: 44
126304235 GGTTCCTACA
** *
126304245 TTATATACTTCAAA-TTATTATATCGTGTTTATTTTGAAATTAT
1 TTATATACTTCAAACTTATTATATATTATTTATTTTGAAATTAT
* * *
126304288 TTATATACTTCAAA-TTATTATGTCTT-TTTATTTTGAAATTAC
1 TTATATACTTCAAACTTATTATATATTATTTATTTTGAAATTAT
* *
126304330 TTATATACTTCAAA-ATATTATATCTTATTTATTTTGAAATTAT
1 TTATATACTTCAAACTTATTATATATTATTTATTTTGAAATTAT
* *
126304373 TTATATACTTTAAACTTTTATATATATTATTTATTTTGAAATTAT
1 TTATATACTTCAAACTTAT-TATATATTATTTATTTTGAAATTAT
* *
126304418 TTATATACTTTAAACTTTTATATATATTATTTATTTTGAAATTAT
1 TTATATACTTCAAACTTAT-TATATATTATTTATTTTGAAATTAT
* *
126304463 TTATATACTTTAAACTT-TTATATATTATTTATTTT-AGATTAT
1 TTATATACTTCAAACTTATTATATATTATTTATTTTGAAATTAT
126304505 TTATATAC
1 TTATATAC
126304513 ATGTGTTTTT
Statistics
Matches: 211, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
42 53 0.25
43 69 0.33
44 3 0.01
45 86 0.41
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (44 bp):
TTATATACTTCAAACTTATTATATATTATTTATTTTGAAATTAT
Found at i:126304469 original size:90 final size:87
Alignment explanation
Indices: 126304245--126304512 Score: 355
Period size: 85 Copynumber: 3.1 Consensus size: 87
126304235 GGTTCCTACA
* ** * * *
126304245 TTATATACTTCAAATTATTATATCGTGTTTATTTTGAAATTATTTATATACTTCAAA-TTATTAT
1 TTATATACTTCAAAATATTATATATTATTTATTTTGAAATTATTTATATACTTTAAACTTTTTAT
* * *
126304309 GTCTT-TTTATTTTGAAATTAC
66 ATATTATTTATTTTGAAATTAT
*
126304330 TTATATACTTCAAAATATTATATCTTATTTATTTTGAAATTATTTATATACTTTAAACTTTTATA
1 TTATATACTTCAAAATATTATATATTATTTATTTTGAAATTATTTATATACTTTAAACTTTT-TA
126304395 TATATTATTTATTTTGAAATTAT
65 TATATTATTTATTTTGAAATTAT
* * *
126304418 TTATATACTTTAAACTTTTATATATATTATTTATTTTGAAATTATTTATATACTTTAAAC-TTTT
1 TTATATACTTCAAA-ATAT-TATATATTATTTATTTTGAAATTATTTATATACTTTAAACTTTTT
*
126304482 ATATATTATTTATTTT-AGATTAT
64 ATATATTATTTATTTTGAAATTAT
126304505 TTATATAC
1 TTATATAC
126304513 ATGTGTTTTT
Statistics
Matches: 165, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
85 53 0.32
86 3 0.02
87 20 0.12
88 45 0.27
89 5 0.03
90 39 0.24
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (87 bp):
TTATATACTTCAAAATATTATATATTATTTATTTTGAAATTATTTATATACTTTAAACTTTTTAT
ATATTATTTATTTTGAAATTAT
Found at i:126304498 original size:24 final size:24
Alignment explanation
Indices: 126304381--126304498 Score: 62
Period size: 19 Copynumber: 5.2 Consensus size: 24
126304371 ATTTATATAC
126304381 TTTAAACTTTTATATATATTATTTAT
1 TTTAAAC-TTT-TATATATTATTTAT
* *
126304407 TTTGAAA----T-TAT-TTATATAC
1 TTT-AAACTTTTATATATTATTTAT
126304426 TTTAAACTTTTATATATATTATTTAT
1 TTTAAAC-TTT-TATATATTATTTAT
* *
126304452 TTTGAAA----T-TAT-TTATATAC
1 TTT-AAACTTTTATATATTATTTAT
126304471 TTTAAACTTTTATATATTATTTAT
1 TTTAAACTTTTATATATTATTTAT
126304495 TTTA
1 TTTA
126304499 GATTATTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 34
0.62 0.07 0.31
Matches are distributed among these distances:
18 6 0.09
19 18 0.26
20 6 0.09
21 2 0.03
22 1 0.01
23 3 0.04
24 11 0.16
25 3 0.04
26 12 0.18
27 6 0.09
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTAAACTTTTATATATTATTTAT
Found at i:126304541 original size:90 final size:90
Alignment explanation
Indices: 126304272--126304512 Score: 311
Period size: 88 Copynumber: 2.8 Consensus size: 90
126304262 TTATATCGTG
* * * * *
126304272 TTTATTTTGAAATTATTTATATACTTCAAA-TTAT-TATGTCTT-TTTATTTTGAAATTACTTAT
1 TTTATTTTGAAATTATTTATATACTTTAAACTTTTATATATATTATTTATTTTGAAATTATTTAT
* * *
126304334 ATACT-TCAAAATATTATAT--CTTA
66 ATACTGT-AAACTTTTATATAAATTA
126304357 TTTATTTTGAAATTATTTATATACTTTAAACTTTTATATATATTATTTATTTTGAAATTATTTAT
1 TTTATTTTGAAATTATTTATATACTTTAAACTTTTATATATATTATTTATTTTGAAATTATTTAT
* *
126304422 ATACTTTAAACTTTTATATATATTA
66 ATACTGTAAACTTTTATATAAATTA
*
126304447 TTTATTTTGAAATTATTTATATACTTTAAAC-TTT-TATATATTATTTATTTT-AGATTATTTAT
1 TTTATTTTGAAATTATTTATATACTTTAAACTTTTATATATATTATTTATTTTGAAATTATTTAT
126304509 ATAC
66 ATAC
126304513 ATGTGTTTTT
Statistics
Matches: 141, Mismatches: 9, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
85 29 0.21
86 3 0.02
87 20 0.14
88 51 0.36
89 4 0.03
90 34 0.24
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (90 bp):
TTTATTTTGAAATTATTTATATACTTTAAACTTTTATATATATTATTTATTTTGAAATTATTTAT
ATACTGTAAACTTTTATATAAATTA
Found at i:126306090 original size:70 final size:70
Alignment explanation
Indices: 126306002--126306142 Score: 246
Period size: 70 Copynumber: 2.0 Consensus size: 70
126305992 TCAATTCATT
* * *
126306002 AATTTTGACTGTGATTCGACATAGCAAACATCCCTCTTTAAAAAAATAAGTGATGTAATTTGAAA
1 AATTCTGACTGTGATTCGACAGAGCAAACATCCCTCTTTAAAAAAATAAGTGATGCAATTTGAAA
126306067 AACTA
66 AACTA
*
126306072 AATTCTGACTGTGATTCGACAGAGCAAACATCCCTCTTTAAGAAAATAAGTGATGCAATTTGAAA
1 AATTCTGACTGTGATTCGACAGAGCAAACATCCCTCTTTAAAAAAATAAGTGATGCAATTTGAAA
126306137 AACTA
66 AACTA
126306142 A
1 A
126306143 CTTTCGTTTT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (70 bp):
AATTCTGACTGTGATTCGACAGAGCAAACATCCCTCTTTAAAAAAATAAGTGATGCAATTTGAAA
AACTA
Found at i:126306692 original size:10 final size:10
Alignment explanation
Indices: 126306641--126306695 Score: 53
Period size: 9 Copynumber: 5.6 Consensus size: 10
126306631 TTAATTAAAT
126306641 TTAAAAATT-
1 TTAAAAATTA
126306650 TTAAAAATTCA
1 TTAAAAATT-A
*
126306661 -GAAAAATTA
1 TTAAAAATTA
*
126306670 -TAAAAATAAA
1 TTAAAAAT-TA
126306680 TTAAAAATTA
1 TTAAAAATTA
126306690 TTAAAA
1 TTAAAA
126306696 GAATTAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 16 0.42
10 15 0.39
11 7 0.18
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:126306923 original size:35 final size:36
Alignment explanation
Indices: 126306877--126306950 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 36
126306867 TACAAACCAT
126306877 AAACAGTCTATGAAAAGAGATTAGTCGAATGGAA-A
1 AAACAGTCTATGAAAAGAGATTAGTCGAATGGAAGA
*
126306912 AAACAGTCTATGAAAAGAGATTAGTCGGATGGAAGA
1 AAACAGTCTATGAAAAGAGATTAGTCGAATGGAAGA
126306948 AAA
1 AAA
126306951 GGGATAAGGG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 33 0.89
36 4 0.11
ACGTcount: A:0.49, C:0.08, G:0.24, T:0.19
Consensus pattern (36 bp):
AAACAGTCTATGAAAAGAGATTAGTCGAATGGAAGA
Found at i:126307123 original size:24 final size:24
Alignment explanation
Indices: 126307091--126307136 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
126307081 TAGTTGGTTT
* *
126307091 AAAAATGGTAATGATAATTAATAA
1 AAAAATGGTAAAGATAAATAATAA
126307115 AAAAATGGTAAAGATAAATAAT
1 AAAAATGGTAAAGATAAATAAT
126307137 TTTTTGCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (24 bp):
AAAAATGGTAAAGATAAATAATAA
Found at i:126308187 original size:25 final size:25
Alignment explanation
Indices: 126308154--126308223 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
126308144 TAGTATTTAA
126308154 AAAATAAGCTCAATCCAAGATATTT
1 AAAATAAGCTCAATCCAAGATATTT
126308179 AAAATAAGCTCAATCCCAA-ATATTT
1 AAAATAAGCTCAAT-CCAAGATATTT
126308204 AAAATAAGCTCAATCCAAGA
1 AAAATAAGCTCAATCCAAGA
126308224 AGAAAAGGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
24 4 0.09
25 35 0.81
26 4 0.09
ACGTcount: A:0.50, C:0.19, G:0.07, T:0.24
Consensus pattern (25 bp):
AAAATAAGCTCAATCCAAGATATTT
Found at i:126310698 original size:69 final size:70
Alignment explanation
Indices: 126310579--126310718 Score: 237
Period size: 69 Copynumber: 2.0 Consensus size: 70
126310569 TCAATTCTTT
* * *
126310579 AATTTTGACTGTGATTCGACATAGCAAACTTCCCTCTTTAAGAAAATAAGTGATGCAATTTGAAA
1 AATTCTGACTGTGATTCGACAGAGCAAACATCCCTCTTTAAGAAAATAAGTGATGCAATTTGAAA
126310644 AACTA
66 AACTA
126310649 AATTCTGACTGTGATTCGACAGAGC-AACATCCCTCTTTAAGAAAATAAGTGATGCAATTTGAAA
1 AATTCTGACTGTGATTCGACAGAGCAAACATCCCTCTTTAAGAAAATAAGTGATGCAATTTGAAA
*
126310713 AGCTA
66 AACTA
126310718 A
1 A
126310719 CTTTCATTTT
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
69 43 0.65
70 23 0.35
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (70 bp):
AATTCTGACTGTGATTCGACAGAGCAAACATCCCTCTTTAAGAAAATAAGTGATGCAATTTGAAA
AACTA
Found at i:126311282 original size:8 final size:8
Alignment explanation
Indices: 126311269--126311293 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
126311259 TTTTAAATGA
126311269 TATTTTAT
1 TATTTTAT
126311277 TATTTTAT
1 TATTTTAT
126311285 TATTTTAT
1 TATTTTAT
126311293 T
1 T
126311294 TAGTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:126313485 original size:46 final size:46
Alignment explanation
Indices: 126313433--126313833 Score: 479
Period size: 46 Copynumber: 8.6 Consensus size: 46
126313423 GCTTTCTGAA
126313433 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
126313479 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
126313525 ATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
126313571 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * * ** *
126313617 ATAAAATGTGTAAGCCGCTATAAGGATG--AGGTTCGCGGGAGTGTGCTTTC-TGAA
1 ATGAAATGTGTAAGAC-C-AT--GGTTGAAAGATAC-C---A-TG-GC-AACATGAT
126313671 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
126313717 ATGAAATGTGGAAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** * *
126313762 CGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
126313808 A-GAAAATGAGTAAGACCATAGTTGAA
1 ATG-AAATGTGTAAGACCATGGTTGAA
126313834 GACACTATGA
Statistics
Matches: 307, Mismatches: 32, Indels: 32
0.83 0.09 0.09
Matches are distributed among these distances:
45 40 0.13
46 217 0.71
47 3 0.01
48 7 0.02
49 1 0.00
50 8 0.03
51 1 0.00
52 7 0.02
53 3 0.01
54 19 0.06
55 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:126314152 original size:16 final size:17
Alignment explanation
Indices: 126314131--126314163 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
126314121 ATGATGGAGT
126314131 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
126314147 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
126314164 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:126316274 original size:26 final size:26
Alignment explanation
Indices: 126316245--126316325 Score: 78
Period size: 26 Copynumber: 3.1 Consensus size: 26
126316235 TACTATATAT
126316245 ATACATATAATATAGTTATTAAGAAA
1 ATACATATAATATAGTTATTAAGAAA
* *
126316271 ATACATACAATATA-TAATATTAAGAAT
1 ATACATATAATATAGT--TATTAAGAAA
* *
126316298 ATATATAATAATAT-GGTATTAA-AAA
1 ATACAT-ATAATATAGTTATTAAGAAA
126316323 ATA
1 ATA
126316326 TAGTATTGTA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
25 6 0.13
26 19 0.42
27 14 0.31
28 6 0.13
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (26 bp):
ATACATATAATATAGTTATTAAGAAA
Found at i:126316700 original size:2 final size:2
Alignment explanation
Indices: 126316693--126316731 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
126316683 ATGACATTAA
*
126316693 AT AT AT AT AT AT AT AT AT A- AT AT AA AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
126316732 CCTATATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 31 0.94
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:126316721 original size:15 final size:15
Alignment explanation
Indices: 126316693--126316731 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
126316683 ATGACATTAA
*
126316693 ATAT-ATATATATAT
1 ATATAATATAAATAT
126316707 ATATAATATAAATAT
1 ATATAATATAAATAT
126316722 ATATAATATA
1 ATATAATATA
126316732 CCTATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATATAATATAAATAT
Found at i:126316955 original size:2 final size:2
Alignment explanation
Indices: 126316907--126316936 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
126316897 TACATAAAAA
*
126316907 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126316937 GTGTGTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:126318317 original size:20 final size:19
Alignment explanation
Indices: 126318294--126318334 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
126318284 AAAAATTCAG
*
126318294 AAAATTTATAAAAATAAATT
1 AAAAATTATAAAAAT-AATT
*
126318314 AAAAATTATTAAAATAATT
1 AAAAATTATAAAAATAATT
126318333 AA
1 AA
126318335 TATGTAGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATTATAAAAATAATT
Found at i:126318452 original size:18 final size:19
Alignment explanation
Indices: 126318431--126318494 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
126318421 ACAATTAATT
126318431 AAATTTAAAAATT-TAAAA
1 AAATTTAAAAATTATAAAA
**
126318449 AAATCAAAAAAATTATAAAA
1 AAAT-TTAAAAATTATAAAA
*
126318469 ATAAATTAAAAATTATCAAAA
1 A-AATTTAAAAATTAT-AAAA
*
126318490 GAATT
1 AAATT
126318495 AATGTGTAGT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 4 0.11
19 7 0.20
20 18 0.51
21 6 0.17
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (19 bp):
AAATTTAAAAATTATAAAA
Found at i:126318496 original size:19 final size:20
Alignment explanation
Indices: 126318430--126318489 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 20
126318420 AACAATTAAT
*
126318430 TAAATTTAAAAATTTAAAAAAA
1 TAAA-TTAAAAA-TTATAAAAA
*
126318452 TCAA--AAAAATTATAAAAA
1 TAAATTAAAAATTATAAAAA
126318470 TAAATTAAAAATTATCAAAA
1 TAAATTAAAAATTAT-AAAA
126318490 GAATTAATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 11 0.34
19 5 0.16
20 9 0.28
21 4 0.12
22 3 0.09
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAATTAAAAATTATAAAAA
Found at i:126318881 original size:24 final size:24
Alignment explanation
Indices: 126318849--126318894 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
126318839 TAGTTGGTTT
* *
126318849 AAAAATGGTAATGATAATTAATAA
1 AAAAATGGTAAAGATAAATAATAA
126318873 AAAAATGGTAAAGATAAATAAT
1 AAAAATGGTAAAGATAAATAAT
126318895 TTTTTGCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (24 bp):
AAAAATGGTAAAGATAAATAATAA
Done.