Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 416 of 425
Found at i:126327205 original size:20 final size:20
Alignment explanation
Indices: 126327180--126327229 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
126327170 ATAAAACAAA
126327180 AGAATAATGAAAATGATACC
1 AGAATAATGAAAATGATACC
126327200 AGAATAATGAAAATGATACC
1 AGAATAATGAAAATGATACC
**
126327220 TTAATAATGA
1 AGAATAATGA
126327230 TATGGTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.54, C:0.08, G:0.14, T:0.24
Consensus pattern (20 bp):
AGAATAATGAAAATGATACC
Found at i:126329301 original size:50 final size:49
Alignment explanation
Indices: 126329226--126329396 Score: 217
Period size: 44 Copynumber: 3.5 Consensus size: 49
126329216 CCATGGCAAC
126329226 AAGTGATAAGTGATAGCTTCGGCTACACTTACCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTA-CTGATCAAGGACAAATGA
*
126329276 AAGTGATAAGTAATAGCTTCGGCTACAC-T--T-ATC-AGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTACTGATCAAGGACAAATGA
* *
126329320 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTA-CTGATCAAGGACAAATGA
* * * *
126329370 CAAGTGAAAAGTGGTAGCCTAGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
126329397 CTGATCAGTG
Statistics
Matches: 106, Mismatches: 8, Indels: 13
0.83 0.06 0.10
Matches are distributed among these distances:
44 38 0.36
45 4 0.04
46 1 0.01
48 1 0.01
49 4 0.04
50 36 0.34
51 22 0.21
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (49 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTACTGATCAAGGACAAATGA
Found at i:126329404 original size:94 final size:94
Alignment explanation
Indices: 126329226--126329404 Score: 261
Period size: 94 Copynumber: 1.9 Consensus size: 94
126329216 CCATGGCAAC
* *
126329226 AAGTGATAAGTGATAGCTTCGGCTACACTTACCTGATCAAGGACAAATGAAAGTGATAAGTAATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTACCTGATCAAGGACAAATAAAAGTGAAAAGTAATA
* * *
126329291 GCTTCGGCTACACTTATCAGGACAAATGA
66 GCCTAGGCTACACTGATCAGGACAAATGA
* * **
126329320 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATAACAAGTGAAAAGTGGT
1 AAGTGATAAGTGATAGCTTCGGCTACACTTACCTGATCAAGGACAAATAA-AAGTGAAAAGTAAT
126329385 AGCCTAGGCTAC-CTGATCAG
65 AGCCTAGGCTACACTGATCAG
126329405 TGAAAAGTGG
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
94 54 0.72
95 21 0.28
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (94 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTACCTGATCAAGGACAAATAAAAGTGAAAAGTAATA
GCCTAGGCTACACTGATCAGGACAAATGA
Found at i:126329410 original size:31 final size:31
Alignment explanation
Indices: 126329372--126329551 Score: 231
Period size: 31 Copynumber: 5.8 Consensus size: 31
126329362 ACAAATAACA
*
126329372 AGTGAAAAGTGGTAGCCTAGGCTACCTGATC
1 AGTGAAAAGTGGTAGCCTCGGCTACCTGATC
* *
126329403 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCCTCGGCTACCTGATC
*
126329434 AGTGAAAAGTGGTAG-CTCCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCCT-CGGCTACCTGATC
*
126329465 AGTGAAAAGTGGAAG-CTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCCT-CGGCTACCTGATC
*
126329496 AGTGAAAAATGGTAG-CTCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCCTC-GGCTACCTGATC
** *
126329527 AGTGATTAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCCTCGGCTAC
126329552 AAGTGACAAG
Statistics
Matches: 132, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
30 2 0.02
31 128 0.97
32 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCCTCGGCTACCTGATC
Found at i:126329469 original size:62 final size:62
Alignment explanation
Indices: 126329372--126329551 Score: 263
Period size: 62 Copynumber: 2.9 Consensus size: 62
126329362 ACAAATAACA
*
126329372 AGTGAAAAGTGGTAGC-CTAGGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTC-AGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
126329434 AGTGAAAAGTGGTAGCTCCGGCTACCTGATTAGTGAAAAGTGGAAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCAGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * **
126329496 AGTGAAAAATGGTAGCTCTGGCTACCTGATCAGTGATTAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCAGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
126329552 AAGTGACAAG
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
62 104 0.99
63 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (62 bp):
AGTGAAAAGTGGTAGCTCAGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:126329488 original size:93 final size:93
Alignment explanation
Indices: 126329372--126329551 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
126329362 ACAAATAACA
* *
126329372 AGTGAAAAGTGGTAGCCTAGGCTACCTGATCAGTGAAAAGTGGTAGCTTCT-GCTACCTGATCAG
1 AGTGAAAAGTGGAAGCCTAGGCTACCTGATCAGTGAAAAATGGTAGC-TCTGGCTACCTGATCAG
126329436 TGAAAAGTGGTAGCTCCGGCTACCTGATT
65 TGAAAAGTGGTAGCTCCGGCTACCTGATT
*
126329465 AGTGAAAAGTGGAAG-CTCCGGCTACCTGATCAGTGAAAAATGGTAGCTCTGGCTACCTGATCAG
1 AGTGAAAAGTGGAAGCCT-AGGCTACCTGATCAGTGAAAAATGGTAGCTCTGGCTACCTGATCAG
** *
126329529 TGATTAGTGGTAGCTTCGGCTAC
65 TGAAAAGTGGTAGCTCCGGCTAC
126329552 AAGTGACAAG
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
92 5 0.06
93 74 0.94
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (93 bp):
AGTGAAAAGTGGAAGCCTAGGCTACCTGATCAGTGAAAAATGGTAGCTCTGGCTACCTGATCAGT
GAAAAGTGGTAGCTCCGGCTACCTGATT
Found at i:126329674 original size:49 final size:48
Alignment explanation
Indices: 126329573--126329736 Score: 191
Period size: 49 Copynumber: 3.6 Consensus size: 48
126329563 GATTTCCGTA
** * * *
126329573 TAAGACCATATTTGGGATATTGCATCAGTA-A-GATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGATTCGTG
* *
126329619 TAAGACCATAGCTGGGTTATGGCATCAATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGATT-CGTG
*
126329668 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGATTCGTG
126329710 TAAGACCATAGCTGGGCTATGGCATCA
1 TAAGACCATAGCTGGGCTATGGCATCA
126329737 TTATCTGAAG
Statistics
Matches: 105, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
42 29 0.28
44 1 0.01
45 1 0.01
46 26 0.25
48 12 0.11
49 36 0.34
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCAATATATGATATGTGATTCGTG
Found at i:126329711 original size:42 final size:43
Alignment explanation
Indices: 126329616--126329779 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 43
126329606 TATGTGATTC
* * *
126329616 GTGTAAGACCATAGCTGGGTTATGGCATCAATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATC--GAT-T-ATATGAAGA-T
*
126329663 ACGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
126329707 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATCTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
126329749 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
126329780 GAAAACGAAG
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 64 0.62
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 28 0.27
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:126330453 original size:23 final size:23
Alignment explanation
Indices: 126330423--126330473 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
126330413 ATGATATTTC
*
126330423 AAATACTTTGGTGAATAAAGCTT
1 AAATACTTTGGTAAATAAAGCTT
126330446 AAATACTTTGGTAAATAAAGCTT
1 AAATACTTTGGTAAATAAAGCTT
126330469 AAATA
1 AAATA
126330474 TGAAATAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (23 bp):
AAATACTTTGGTAAATAAAGCTT
Found at i:126330635 original size:3 final size:3
Alignment explanation
Indices: 126330627--126331052 Score: 160
Period size: 3 Copynumber: 141.3 Consensus size: 3
126330617 GACAATACAT
** * *
126330627 TAA TAA TAA TAA TAA TAA TATA TGT TAA TAA CAA TAA TAA TAA TATG
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TA-A
* * * * * *
126330674 TAA AAA AAA GGAA -AA TAA TAA -CA TAG TAA AAA TAA TAA TAA T-A
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * * * * * **
126330717 TGT TAA TAA AAA TAA TAG TAG CAG TAA TAA TAGA -AA GGTAA TGG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA --TAA TAA TAA
* * * * * *
126330764 TAA AAA TAA AAA TAA AAA TAA TAG TAA TAA TGA TAA TAA TAA TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * ** *
126330812 TAA CAGA AAA AAA GCAA -CA TAA CGA TAA -AA GTAA TAA TAA TAA TTA
1 TAA TA-A TAA TAA -TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
* * * *
126330858 TTA TAA TAG TAA TAA T-A TAA -AA TTAA TGA T-A TAA TAA T-G TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
** * * **
126330900 TAA TAA TAA TAA TGC TGA CAA TAGA TAA TAA TAA TAA -AA GGCA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA -TAA TAA
* * * * * *
126330946 TAA TAA TAG TAA TAAA CAA AAA TAG TAA TAA TAA TAA TGAA -AG TAG
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
*
126330992 TGGA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
126331037 TAA -ATA TAA TAA TAA T
1 TAA TA-A TAA TAA TAA T
126331053 GGAAAAATAG
Statistics
Matches: 316, Mismatches: 77, Indels: 60
0.70 0.17 0.13
Matches are distributed among these distances:
2 21 0.07
3 269 0.85
4 24 0.08
5 2 0.01
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:126334697 original size:18 final size:18
Alignment explanation
Indices: 126334665--126334700 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
126334655 CTTCTTACAT
126334665 ATATTAAAATCTATAAAA
1 ATATTAAAATCTATAAAA
126334683 ATATTGAAAAT-TATAAAA
1 ATATT-AAAATCTATAAAA
126334701 TAAATAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (18 bp):
ATATTAAAATCTATAAAA
Found at i:126336997 original size:24 final size:24
Alignment explanation
Indices: 126336965--126337012 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
126336955 CAATATTTAC
*
126336965 TTTTCAAATTTAAAATAAATTATT
1 TTTTCAAATCTAAAATAAATTATT
* *
126336989 TTTTTAAATCTATAATAAATTATT
1 TTTTCAAATCTAAAATAAATTATT
126337013 GAATTTCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTTCAAATCTAAAATAAATTATT
Found at i:126344949 original size:11 final size:11
Alignment explanation
Indices: 126344935--126345003 Score: 68
Period size: 11 Copynumber: 6.4 Consensus size: 11
126344925 TTTTTAATTG
126344935 TTTTGTTATTA
1 TTTTGTTATTA
*
126344946 TTTTGTTATTG
1 TTTTGTTATTA
126344957 TTTT-TTATTA
1 TTTTGTTATTA
**
126344967 TTTTGTTACCA
1 TTTTGTTATTA
** *
126344978 TTTCATTAGTA
1 TTTTGTTATTA
*
126344989 TGTTGTTATTA
1 TTTTGTTATTA
126345000 TTTT
1 TTTT
126345004 ATTGTTATTA
Statistics
Matches: 44, Mismatches: 13, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
10 9 0.20
11 35 0.80
ACGTcount: A:0.17, C:0.04, G:0.10, T:0.68
Consensus pattern (11 bp):
TTTTGTTATTA
Found at i:126344964 original size:21 final size:22
Alignment explanation
Indices: 126344931--126344974 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
126344921 GTTTTTTTTA
126344931 ATTGTTTTGTTATTATTTTGTT
1 ATTGTTTTGTTATTATTTTGTT
126344953 ATTGTTTT-TTATTATTTTGTT
1 ATTGTTTTGTTATTATTTTGTT
126344974 A
1 A
126344975 CCATTTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (22 bp):
ATTGTTTTGTTATTATTTTGTT
Found at i:126345395 original size:19 final size:17
Alignment explanation
Indices: 126345371--126345409 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
126345361 TTCTTATATG
126345371 AAATATAAATTAATATTTT
1 AAATAT-AATTAAT-TTTT
*
126345390 AAATATATTTAATTTTT
1 AAATATAATTAATTTTT
126345407 AAA
1 AAA
126345410 AACAAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 6 0.32
19 6 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATATAATTAATTTTT
Found at i:126346326 original size:20 final size:22
Alignment explanation
Indices: 126346278--126346326 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
126346268 TTATTGTTTG
126346278 ATATAATCACATAAAATTATAT
1 ATATAATCACATAAAATTATAT
*
126346300 ATAATAAT-ACATAATATTATA-
1 AT-ATAATCACATAAAATTATAT
126346321 ATATAA
1 ATATAA
126346327 ATATTAAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 2 0.08
22 14 0.56
23 5 0.20
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATAATCACATAAAATTATAT
Found at i:126346662 original size:12 final size:13
Alignment explanation
Indices: 126346635--126346663 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
126346625 TTATTTTCCC
126346635 TATTTTTAAAATA
1 TATTTTTAAAATA
126346648 TATTTTTAAAA-A
1 TATTTTTAAAATA
126346660 TATT
1 TATT
126346664 AATAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TATTTTTAAAATA
Found at i:126365054 original size:16 final size:16
Alignment explanation
Indices: 126365033--126365063 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
126365023 CTTGATGGAT
126365033 TAAAGTACAAAAAATC
1 TAAAGTACAAAAAATC
*
126365049 TAAAGTATAAAAAAT
1 TAAAGTACAAAAAAT
126365064 AAAAAAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (16 bp):
TAAAGTACAAAAAATC
Found at i:126367241 original size:29 final size:30
Alignment explanation
Indices: 126367206--126367262 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
126367196 CCTTAAATCT
126367206 AACTTTT-CAAAATTACAATTTTGCCCCTA
1 AACTTTTGCAAAATTACAATTTTGCCCCTA
* * *
126367235 AACTTTTGCATATTTACACTTTTGCCCC
1 AACTTTTGCAAAATTACAATTTTGCCCC
126367263 AAAGCCCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.28, C:0.26, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTTGCAAAATTACAATTTTGCCCCTA
Found at i:126375025 original size:23 final size:23
Alignment explanation
Indices: 126374995--126375041 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
126374985 TATGTTTAAC
126374995 ATGAAAACCCCTTTAGCCCAAAG
1 ATGAAAACCCCTTTAGCCCAAAG
*
126375018 ATGAAAACCCCTTTGGCCCAAAG
1 ATGAAAACCCCTTTAGCCCAAAG
126375041 A
1 A
126375042 CAATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.30, G:0.15, T:0.17
Consensus pattern (23 bp):
ATGAAAACCCCTTTAGCCCAAAG
Found at i:126377331 original size:30 final size:30
Alignment explanation
Indices: 126377297--126377359 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
126377287 ATTTATTTTA
126377297 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
126377327 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
126377357 TTG
1 TTG
126377360 ATTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:126378883 original size:121 final size:120
Alignment explanation
Indices: 126378669--126379019 Score: 542
Period size: 121 Copynumber: 2.9 Consensus size: 120
126378659 TCCTAAAAAA
*
126378669 GTTAAAACATCACACACATTGTTAGTACATATTGGTTCC-TGTTTTAACATGTTACAACTGTTTA
1 GTTAAAACATCACACACATTGTTCGTACATATTGG-TCCTTGTTTTAACATGTTACAACTG-TTA
*
126378733 ACATGTGGGTGGTAGAGTCGGTAATAAAAGGATTTGGAATAACAACTTTTCCTAAAT
64 ACATGTGGGTGGTAGGGTCGGTAATAAAAGGATTTGGAATAACAACTTTTCCTAAAT
*
126378790 GTTAAAACATCACACACATTGTTCGTACATTTTGGTCCTTGTTTTAACATGTTACAACTGTTCAA
1 GTTAAAACATCACACACATTGTTCGTACATATTGGTCCTTGTTTTAACATGTTACAACTGTT-AA
* *
126378855 CATGTGGATGGTAGGGTCGGTAATAAAAGGATTTGGAATAACAGCTTTTCCTAAAT
65 CATGTGGGTGGTAGGGTCGGTAATAAAAGGATTTGGAATAACAACTTTTCCTAAAT
* * * * *
126378911 GTTAAAACATCACACACATTGTTCATACATGTTGGTCCTTGTTTTAACATGTTATAATTGTTAAA
1 GTTAAAACATCACACACATTGTTCGTACATATTGGTCCTTGTTTTAACATGTTACAACTGTTAAC
* * * *
126378976 ATGTGGGTGGTTGGGTAGGCAATAAAAAGATTTGGAATAACAAC
66 ATGTGGGTGGTAGGGTCGGTAATAAAAGGATTTGGAATAACAAC
126379020 CGGGTAAAAA
Statistics
Matches: 212, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
120 45 0.21
121 167 0.79
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34
Consensus pattern (120 bp):
GTTAAAACATCACACACATTGTTCGTACATATTGGTCCTTGTTTTAACATGTTACAACTGTTAAC
ATGTGGGTGGTAGGGTCGGTAATAAAAGGATTTGGAATAACAACTTTTCCTAAAT
Found at i:126379163 original size:12 final size:12
Alignment explanation
Indices: 126379146--126379200 Score: 67
Period size: 12 Copynumber: 4.6 Consensus size: 12
126379136 GAAGAAATTG
126379146 TAAAATAATTTT
1 TAAAATAATTTT
*
126379158 TAAAAT-ATTAT
1 TAAAATAATTTT
* *
126379169 AAAAATGAATTTG
1 TAAAAT-AATTTT
126379182 TAAAATAATTTT
1 TAAAATAATTTT
126379194 TAAAATA
1 TAAAATA
126379201 TTATAAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
11 9 0.26
12 18 0.51
13 8 0.23
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (12 bp):
TAAAATAATTTT
Found at i:126379725 original size:2 final size:2
Alignment explanation
Indices: 126379718--126379747 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
126379708 TTTAAATACC
126379718 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126379748 GGATTCAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126386116 original size:21 final size:21
Alignment explanation
Indices: 126386075--126386117 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
126386065 TAAACTGGAA
* **
126386075 AAAAGATTCATCCATTTTTCT
1 AAAAGATTAATCCATGCTTCT
126386096 AAAAGATTAATCCATGCTTCT
1 AAAAGATTAATCCATGCTTCT
126386117 A
1 A
126386118 TCATATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (21 bp):
AAAAGATTAATCCATGCTTCT
Found at i:126389142 original size:15 final size:16
Alignment explanation
Indices: 126389114--126389143 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
126389104 ACAAAAGCTT
126389114 CATTTTATATTTTATA
1 CATTTTATATTTTATA
126389130 CATTTTA-ATTTTAT
1 CATTTTATATTTTAT
126389144 TATGCACATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (16 bp):
CATTTTATATTTTATA
Found at i:126395689 original size:31 final size:32
Alignment explanation
Indices: 126395639--126395707 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 32
126395629 AATTATGAAA
*
126395639 AAAATTCAAATAACTAATTAAATATTAATACT
1 AAAATTCAAATAACAAATTAAATATTAATACT
* * *
126395671 AAAATT-AAATACCAAATTATATATTAATCCT
1 AAAATTCAAATAACAAATTAAATATTAATACT
126395702 AAAATT
1 AAAATT
126395708 TATTATTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 27 0.82
32 6 0.18
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (32 bp):
AAAATTCAAATAACAAATTAAATATTAATACT
Found at i:126401062 original size:13 final size:13
Alignment explanation
Indices: 126401022--126401098 Score: 82
Period size: 13 Copynumber: 5.9 Consensus size: 13
126401012 ACACTTAAAT
*
126401022 TTTTCCAAAGCAC
1 TTTTCAAAAGCAC
* **
126401035 TTCTCAAAAATAC
1 TTTTCAAAAGCAC
*
126401048 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
126401061 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
126401074 TTTTCAAAAGCAT
1 TTTTCAAAAGCAC
126401087 TTTTCAAAAGCA
1 TTTTCAAAAGCA
126401099 ATGAAGAACT
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 52 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:126401094 original size:39 final size:39
Alignment explanation
Indices: 126401022--126401098 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 39
126401012 ACACTTAAAT
*
126401022 TTTTCCAAAGCACTTCTCAAAAATACTTCTCAAAAGCAC
1 TTTTCCAAAGCACTTCTCAAAAACACTTCTCAAAAGCAC
* * * * *
126401061 TTTTCCACAGCACTTTTCAAAAGCATTTTTCAAAAGCA
1 TTTTCCAAAGCACTTCTCAAAAACACTTCTCAAAAGCA
126401099 ATGAAGAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (39 bp):
TTTTCCAAAGCACTTCTCAAAAACACTTCTCAAAAGCAC
Found at i:126405064 original size:17 final size:17
Alignment explanation
Indices: 126405042--126405076 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
126405032 AGCTGTGTGA
126405042 TGAGACTTTATAATGAC
1 TGAGACTTTATAATGAC
126405059 TGAGACTTTATAATGAC
1 TGAGACTTTATAATGAC
126405076 T
1 T
126405077 CGGATTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.37
Consensus pattern (17 bp):
TGAGACTTTATAATGAC
Found at i:126415195 original size:23 final size:24
Alignment explanation
Indices: 126415150--126415196 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
126415140 TGTTCGCTTA
126415150 ATGTTCACAAACATATAAATGAAC
1 ATGTTCACAAACATATAAATGAAC
126415174 ATGTTCACAAACAT-TAAATGAAC
1 ATGTTCACAAACATATAAATGAAC
126415197 CAAGCCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.49, C:0.17, G:0.09, T:0.26
Consensus pattern (24 bp):
ATGTTCACAAACATATAAATGAAC
Found at i:126416350 original size:102 final size:102
Alignment explanation
Indices: 126416174--126416379 Score: 385
Period size: 102 Copynumber: 2.0 Consensus size: 102
126416164 TAGGCCAATG
*
126416174 AAGCATGTCATATATGAAAAATAGAAAGCAGGCTCGTAAAATTCCGGAAATATGATAGTTGTAGT
1 AAGCATGTCATATATGAAAAATAGAAAGCAGACTCGTAAAATTCCGGAAATATGATAGTTGTAGT
126416239 GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
66 GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
* *
126416276 AAGCATGTCATATATGAAAAATAGAAAGGAGACTCGTTAAATTCCGGAAATATGATAGTTGTAGT
1 AAGCATGTCATATATGAAAAATAGAAAGCAGACTCGTAAAATTCCGGAAATATGATAGTTGTAGT
126416341 GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
66 GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
126416378 AA
1 AA
126416380 CAAAAAAAAA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 101 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (102 bp):
AAGCATGTCATATATGAAAAATAGAAAGCAGACTCGTAAAATTCCGGAAATATGATAGTTGTAGT
GACTATCTGATCATTCAAGCACTTTTAACAATGTTGC
Found at i:126418284 original size:28 final size:26
Alignment explanation
Indices: 126418246--126418305 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
126418236 AATTTTAAAA
126418246 TTTAAAAAAAAGTATA-AGACTAAATT
1 TTTAAAAAAAA-TATAGAGACTAAATT
*
126418272 TTTAGAAATAAAATATAGGGACTAAA-T
1 TTTA-AAA-AAAATATAGAGACTAAATT
126418299 TTTAAAA
1 TTTAAAA
126418306 TTGTAAATAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 7 0.23
27 12 0.40
28 11 0.37
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.32
Consensus pattern (26 bp):
TTTAAAAAAAATATAGAGACTAAATT
Found at i:126418433 original size:59 final size:58
Alignment explanation
Indices: 126418351--126418462 Score: 172
Period size: 59 Copynumber: 1.9 Consensus size: 58
126418341 CTTTTTCATT
126418351 TTAAAAGTTTATATAAAAATTAAATGATTATTTTATTAAAATGATAGAATTAAATGTCTA
1 TTAAAAGTTTATATAAAAATTAAATGATT-TTTTATT-AAATGATAGAATTAAATGTCTA
* * *
126418411 TTAAAATTTTAT-TAAAAATTAAATGATTTTTTATTAAATGGTATAATTAAAT
1 TTAAAAGTTTATATAAAAATTAAATGATTTTTTATTAAATGATAGAATTAAAT
126418463 CTAAAAAATG
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
57 15 0.31
58 7 0.14
59 16 0.33
60 11 0.22
ACGTcount: A:0.47, C:0.01, G:0.07, T:0.45
Consensus pattern (58 bp):
TTAAAAGTTTATATAAAAATTAAATGATTTTTTATTAAATGATAGAATTAAATGTCTA
Found at i:126420040 original size:20 final size:19
Alignment explanation
Indices: 126420016--126420057 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
126420006 ATTTAAATAA
*
126420016 TAAAAAT-ATTTTAAAAATT
1 TAAAAATAATTAT-AAAATT
126420035 TAAAAATAATTATAAAATT
1 TAAAAATAATTATAAAATT
126420054 TAAA
1 TAAA
126420058 TAAAAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAAAATAATTATAAAATT
Found at i:126420067 original size:19 final size:19
Alignment explanation
Indices: 126420029--126420067 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
126420019 AAATATTTTA
*
126420029 AAAATTTAAAAATAATTAT
1 AAAATTTAAAAATAAATAT
126420048 AAAATTTAAATAA-AAATAT
1 AAAATTTAAA-AATAAATAT
126420067 A
1 A
126420068 GTTTTAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTTAAAAATAAATAT
Found at i:126420980 original size:20 final size:20
Alignment explanation
Indices: 126420955--126420994 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
126420945 AAAAATACAA
126420955 AAATAACATTAAATAATTAG
1 AAATAACATTAAATAATTAG
126420975 AAATAACATTAAATAATTAG
1 AAATAACATTAAATAATTAG
126420995 TAAGGAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (20 bp):
AAATAACATTAAATAATTAG
Found at i:126435284 original size:30 final size:31
Alignment explanation
Indices: 126435234--126435291 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
126435224 ACACTCATTG
* * *
126435234 TCACTGAACTATTAATAAATTTACATTTCAA
1 TCACTCAACTATTAAAAAATTTAAATTTCAA
126435265 TCACTCAACT-TTAAAAAATTTAAATTT
1 TCACTCAACTATTAAAAAATTTAAATTT
126435292 GTTTTGTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.40
Consensus pattern (31 bp):
TCACTCAACTATTAAAAAATTTAAATTTCAA
Found at i:126436203 original size:63 final size:63
Alignment explanation
Indices: 126436125--126436324 Score: 373
Period size: 63 Copynumber: 3.2 Consensus size: 63
126436115 ATTGTAGTTT
*
126436125 GAAAGGAAGATCATAAATTTTAGTTGAATTCTGCAAGTATTTACATTTATAATGATGTTGATA
1 GAAAGGAAGATCATAAATTTTAGTTGAATTCTGCAAGTATTTACATTTATAATGTTGTTGATA
*
126436188 GAAAGGAAGATCATAAATTTTAGTTGAATTCTGCCAGTATTTACATTTATAATGTTGTTGATA
1 GAAAGGAAGATCATAAATTTTAGTTGAATTCTGCAAGTATTTACATTTATAATGTTGTTGATA
126436251 GAAAGGAAGATCATAAATTTTAGTTGAATTCTGCAAGTATTTACATTTATAATGTTGTTGATA
1 GAAAGGAAGATCATAAATTTTAGTTGAATTCTGCAAGTATTTACATTTATAATGTTGTTGATA
*
126436314 GGAAGGAAGAT
1 GAAAGGAAGAT
126436325 AATCCCAAAT
Statistics
Matches: 133, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 133 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.38
Consensus pattern (63 bp):
GAAAGGAAGATCATAAATTTTAGTTGAATTCTGCAAGTATTTACATTTATAATGTTGTTGATA
Found at i:126441792 original size:18 final size:18
Alignment explanation
Indices: 126441769--126441807 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
126441759 ATTATAAAAA
*
126441769 AAATTA-AAAATATTAATT
1 AAATTATAAAA-ATTAAAT
126441787 AAATTATAAAAATTAAAT
1 AAATTATAAAAATTAAAT
126441805 AAA
1 AAA
126441808 AAAATTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATTATAAAAATTAAAT
Found at i:126441812 original size:13 final size:13
Alignment explanation
Indices: 126441765--126441819 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
126441755 GGCTATTATA
126441765 AAAAAAATTAAA-
1 AAAAAAATTAAAT
**
126441777 AATATTAATTAAATT
1 AA-AAAAATTAAA-T
*
126441792 ATAAAAATTAAAT
1 AAAAAAATTAAAT
126441805 AAAAAAATTAAAT
1 AAAAAAATTAAAT
126441818 AA
1 AA
126441820 TATTAAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
12 2 0.06
13 23 0.68
14 8 0.24
15 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAAAAATTAAAT
Found at i:126445485 original size:16 final size:17
Alignment explanation
Indices: 126445454--126445486 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
126445444 TTCATAAATA
126445454 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
126445471 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
126445487 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:126446000 original size:46 final size:46
Alignment explanation
Indices: 126445767--126445998 Score: 270
Period size: 46 Copynumber: 5.0 Consensus size: 46
126445757 TTATCTTTGA
* * * * *
126445767 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* ***
126445813 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
126445859 CATGTTGCCATGGTATCTTTCAGCCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * * *
126445905 CACGTTGCTATGGTATCTTTGAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
126445951 CA-GATTGTCATGGTATCTTTCAACCACGGTCTTACACATTTCATAT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
126445997 CA
1 CA
126445999 GAGAGCACAC
Statistics
Matches: 164, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
45 5 0.03
46 159 0.97
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:126447838 original size:2 final size:2
Alignment explanation
Indices: 126447831--126447882 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
126447821 CTTTCCTTTC
126447831 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126447873 AT AT AT AT AT
1 AT AT AT AT AT
126447883 TAAATAAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126448215 original size:29 final size:30
Alignment explanation
Indices: 126448165--126448232 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
126448155 CACCCTTAAA
* * *
126448165 ATATTTTCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
126448195 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
126448224 AGTATTTAC
1 A-TATTTAC
126448233 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:126456205 original size:14 final size:14
Alignment explanation
Indices: 126456186--126456215 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
126456176 CTTGTTTTTC
*
126456186 TTTTTCCTTTTCCT
1 TTTTTCCTTTACCT
126456200 TTTTTCCTTTACCT
1 TTTTTCCTTTACCT
126456214 TT
1 TT
126456216 AATCTTCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.03, C:0.27, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTCCTTTACCT
Found at i:126456531 original size:3 final size:3
Alignment explanation
Indices: 126456516--126456589 Score: 121
Period size: 3 Copynumber: 24.7 Consensus size: 3
126456506 AAAACACCAG
* *
126456516 TCT TCT GCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT GCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
*
126456564 TCT TCT TCT TCG TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
126456590 CATTATCTGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.00, C:0.34, G:0.04, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:126462829 original size:18 final size:18
Alignment explanation
Indices: 126462795--126462832 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
126462785 GTAGAAAACT
**
126462795 TTTAAAAATTATTGAAAA
1 TTTAAAAATTAAAGAAAA
126462813 TTTAAAAATTAAAGAAAA
1 TTTAAAAATTAAAGAAAA
126462831 TT
1 TT
126462833 ATTAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
TTTAAAAATTAAAGAAAA
Found at i:126462849 original size:19 final size:19
Alignment explanation
Indices: 126462827--126462922 Score: 58
Period size: 19 Copynumber: 5.2 Consensus size: 19
126462817 AAAATTAAAG
126462827 AAAATTATTAAAAAATTAT
1 AAAATTATTAAAAAATTAT
** *
126462846 AAAA-TAGAAAAAAAATCAT
1 AAAATTA-TTAAAAAATTAT
* * *
126462865 AAAAATA-TAAATATTTA-
1 AAAATTATTAAAAAATTAT
*
126462882 AAAATTATATAAATACATT-T
1 AAAATTAT-TAAA-AAATTAT
*
126462902 AAAATTATTATAAAA-TAT
1 AAAATTATTAAAAAATTAT
126462920 AAA
1 AAA
126462923 TAAATACAAA
Statistics
Matches: 57, Mismatches: 13, Indels: 15
0.67 0.15 0.18
Matches are distributed among these distances:
17 7 0.12
18 14 0.25
19 24 0.42
20 12 0.21
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.32
Consensus pattern (19 bp):
AAAATTATTAAAAAATTAT
Found at i:126462858 original size:28 final size:27
Alignment explanation
Indices: 126462798--126462859 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
126462788 GAAAACTTTT
* *
126462798 AAAAATTATTGAAAATTTAAAAATTAA
1 AAAAATTATTAAAAAATTAAAAATTAA
*
126462825 AGAAAATTATTAAAAAATTATAAAATAGAA
1 A-AAAATTATTAAAAAATTA-AAAAT-TAA
126462855 AAAAA
1 AAAAA
126462860 ATCATAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 1 0.03
28 16 0.55
29 9 0.31
30 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (27 bp):
AAAAATTATTAAAAAATTAAAAATTAA
Found at i:126462903 original size:21 final size:18
Alignment explanation
Indices: 126462869--126462915 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 18
126462859 AATCATAAAA
126462869 ATATAAATATTTAAAAATT
1 ATATAAATATTT-AAAATT
126462888 ATATAAATACATTTAAAATT
1 ATATAAAT--ATTTAAAATT
126462908 ATTATAAA
1 A-TATAAA
126462916 ATATAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
20 7 0.28
21 10 0.40
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATAAATATTTAAAATT
Found at i:126462953 original size:28 final size:28
Alignment explanation
Indices: 126462873--126462963 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 28
126462863 ATAAAAATAT
126462873 AAATATTTAAAAATTA-TATAAATACATTTAA
1 AAATATTT-AAAATTATTATAAATACA---AA
* *
126462904 AATTATTATAAAA-TATAAATAAATACAAA
1 AAATATT-TAAAATTAT-TATAAATACAAA
*
126462933 AAATATTTAAAATTATTAT-AATAGAAA
1 AAATATTTAAAATTATTATAAATACAAA
126462960 AAAT
1 AAAT
126462964 TATAATTTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
27 11 0.22
28 7 0.14
29 11 0.22
30 2 0.04
31 10 0.20
32 10 0.20
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.35
Consensus pattern (28 bp):
AAATATTTAAAATTATTATAAATACAAA
Found at i:126466953 original size:46 final size:46
Alignment explanation
Indices: 126466900--126467238 Score: 365
Period size: 46 Copynumber: 7.7 Consensus size: 46
126466890 AGTGTGCTCT
*
126466900 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
126466946 CTGATATGAAATGTGTAAGACCATGGTT----G--A--A----AAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
126466980 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
126467026 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
126467072 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * *
126467118 ATGACGGGAAAT-TAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGT-GTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** *
126467164 GTGACATGAAATGAATAAGACC-----TGAAAGATACCACGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
126467205 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
126467239 CACTATGACA
Statistics
Matches: 256, Mismatches: 17, Indels: 40
0.82 0.05 0.13
Matches are distributed among these distances:
34 31 0.12
38 2 0.01
40 3 0.01
41 35 0.14
42 2 0.01
46 183 0.71
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:126466983 original size:34 final size:34
Alignment explanation
Indices: 126466943--126467011 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
126466933 ATACCATGGC
126466943 AACCTGATATGAAATGTGTAAGACCATGGTTGAA
1 AACCTGATATGAAATGTGTAAGACCATGGTTGAA
126466977 AACCTGATATGAAATGTGTAAGACCATGGTTGAA
1 AACCTGATATGAAATGTGTAAGACCATGGTTGAA
126467011 A
1 A
126467012 GATACCATGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (34 bp):
AACCTGATATGAAATGTGTAAGACCATGGTTGAA
Found at i:126467033 original size:80 final size:80
Alignment explanation
Indices: 126466900--126467057 Score: 307
Period size: 80 Copynumber: 2.0 Consensus size: 80
126466890 AGTGTGCTCT
126466900 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
126466965 ACCATGGTTGAAAAC
66 ACCATGGTTGAAAAC
*
126466980 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
126467045 ACCATGGTTGAAA
66 ACCATGGTTGAAA
126467058 GATACCATGG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.25
Consensus pattern (80 bp):
CTGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
ACCATGGTTGAAAAC
Found at i:126471396 original size:31 final size:31
Alignment explanation
Indices: 126471358--126471506 Score: 253
Period size: 31 Copynumber: 4.8 Consensus size: 31
126471348 ATCAATGACA
*
126471358 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
126471389 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
126471420 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
126471451 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
126471482 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
126471507 AAGTGACAAG
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 110 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:126471599 original size:47 final size:47
Alignment explanation
Indices: 126471530--126471654 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
126471520 CAAGTGATTT
* * *
126471530 CTGTATAAAACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
126471577 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
126471624 C-GTGTAAGACCATAGCTGGGCTATGGCATCG
1 CTGTATAAGACCATATCTGGGATATGGCATCG
126471655 ATATATGAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 26 0.38
47 42 0.62
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:126471683 original size:42 final size:43
Alignment explanation
Indices: 126471625--126471739 Score: 162
Period size: 42 Copynumber: 2.7 Consensus size: 43
126471615 TATGTGATTC
*
126471625 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAG
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAG
* *
126471667 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAG
* **
126471709 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
126471740 GAAAATGAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAG
Found at i:126473727 original size:14 final size:14
Alignment explanation
Indices: 126473688--126473735 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
126473678 AAATTTTAAA
126473688 AAAAATAAAAATTCAG
1 AAAAA-AAAAA-TCAG
*
126473704 AAAAAGAAAATCAG
1 AAAAAAAAAATCAG
126473718 AAAAAAAAAA--AG
1 AAAAAAAAAATCAG
126473730 AAAAAA
1 AAAAAA
126473736 TGAGCACAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 8 0.27
14 13 0.43
15 4 0.13
16 5 0.17
ACGTcount: A:0.79, C:0.04, G:0.08, T:0.08
Consensus pattern (14 bp):
AAAAAAAAAATCAG
Found at i:126478481 original size:20 final size:22
Alignment explanation
Indices: 126478442--126478483 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
126478432 TATATGAAAA
*
126478442 TTATTTTAAACTCTTTTATTAT
1 TTATTGTAAACTCTTTTATTAT
126478464 TTATTGTAAAC-C-TTTATTAT
1 TTATTGTAAACTCTTTTATTAT
126478484 CATTAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 1 0.05
22 10 0.53
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.60
Consensus pattern (22 bp):
TTATTGTAAACTCTTTTATTAT
Found at i:126478667 original size:7 final size:6
Alignment explanation
Indices: 126478648--126478677 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
126478638 AGTGTTCTTG
126478648 TTATTT TTATTT TTATTT TTATTT TGTATT
1 TTATTT TTATTT TTATTT TTATTT T-TATT
126478678 ATTCATCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:126484837 original size:10 final size:10
Alignment explanation
Indices: 126484822--126484849 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
126484812 ACTTGTCTCC
126484822 ATTTCATACT
1 ATTTCATACT
126484832 ATTTCATACT
1 ATTTCATACT
126484842 ATTTCATA
1 ATTTCATA
126484850 TTAGCTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (10 bp):
ATTTCATACT
Found at i:126489071 original size:23 final size:22
Alignment explanation
Indices: 126489019--126489071 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
126489009 ATTTGTGCTC
**
126489019 ATTTTTTCTTTTTCTTTTTTTT
1 ATTTTTTCTTTTTCTAATTTTT
*
126489041 TTTATTTTCTTTTTCTGAATTTTT
1 ATT-TTTTCTTTTTCT-AATTTTT
126489065 ATTTTTT
1 ATTTTTT
126489072 AAAATTTGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 2 0.08
23 16 0.64
24 7 0.28
ACGTcount: A:0.09, C:0.08, G:0.02, T:0.81
Consensus pattern (22 bp):
ATTTTTTCTTTTTCTAATTTTT
Found at i:126489432 original size:18 final size:18
Alignment explanation
Indices: 126489399--126489433 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
126489389 GACTTAATCC
126489399 AAATATATTATATTATAA
1 AAATATATTATATTATAA
126489417 AAATCATATTAT-TTATA
1 AAAT-ATATTATATTATA
126489434 CATGTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATATATTATATTATAA
Found at i:126489627 original size:39 final size:38
Alignment explanation
Indices: 126489576--126489659 Score: 123
Period size: 39 Copynumber: 2.2 Consensus size: 38
126489566 AAAGATTATA
* * *
126489576 TTTAATACAATAAAATATTTATTTTATTTATTTGTATTT
1 TTTAATACAATAAAATATTTATTATATTTA-TGGTAGTT
*
126489615 TTTAATATAATAAAATATTTATTATATTTATGGTAGTT
1 TTTAATACAATAAAATATTTATTATATTTATGGTAGTT
126489653 TTTAATA
1 TTTAATA
126489660 GAAATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 13 0.32
39 28 0.68
ACGTcount: A:0.38, C:0.01, G:0.05, T:0.56
Consensus pattern (38 bp):
TTTAATACAATAAAATATTTATTATATTTATGGTAGTT
Found at i:126491813 original size:39 final size:37
Alignment explanation
Indices: 126491765--126491863 Score: 110
Period size: 39 Copynumber: 2.6 Consensus size: 37
126491755 TAATAAAAAT
126491765 TTATCAAATAGAAAAATTATAAAAATATATTTAAAATTA
1 TTAT-AAATAGAAAAATTATAAAAA-ATATTTAAAATTA
* * * *
126491804 TTATAAAATACAAATAAATACAGAAAATATTTAAAATTA
1 TTAT-AAATAGAAA-AATTATAAAAAATATTTAAAATTA
126491843 TTAT-AATAGAAAAAATTATAA
1 TTATAAATAG-AAAAATTATAA
126491864 CTTATAAAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
37 9 0.18
38 3 0.06
39 29 0.59
40 8 0.16
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (37 bp):
TTATAAATAGAAAAATTATAAAAAATATTTAAAATTA
Found at i:126495215 original size:21 final size:21
Alignment explanation
Indices: 126495198--126495241 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
126495188 TTGATAACTG
126495198 TATCCCAAATTATAATAAATC
1 TATCCCAAATTATAATAAATC
126495219 TATCCCAAATTATAATAAATC
1 TATCCCAAATTATAATAAATC
126495240 TA
1 TA
126495242 AATAGAGCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (21 bp):
TATCCCAAATTATAATAAATC
Found at i:126496902 original size:23 final size:23
Alignment explanation
Indices: 126496858--126496902 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
126496848 ATTCATTTCC
* **
126496858 ATAAAAAACATATAAATTTTTTT
1 ATAAAAAACAAATAAAAATTTTT
*
126496881 ATAAAAACCAAATAAAAATTTT
1 ATAAAAAACAAATAAAAATTTT
126496903 AATTAAAATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.36
Consensus pattern (23 bp):
ATAAAAAACAAATAAAAATTTTT
Found at i:126504807 original size:24 final size:24
Alignment explanation
Indices: 126504780--126504826 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
126504770 TGAAAATCAT
126504780 ATATATTGTTTTTATTCATTTTCG
1 ATATATTGTTTTTATTCATTTTCG
126504804 ATATATTGTTTTTATTCATTTTC
1 ATATATTGTTTTTATTCATTTTC
126504827 AATACCCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATATTGTTTTTATTCATTTTCG
Found at i:126507311 original size:38 final size:38
Alignment explanation
Indices: 126507266--126507339 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
126507256 GCAAGTGTTG
* *
126507266 GAGAGAAAATCAAAGATGAAATTGTAAAACATCTTTAT
1 GAGAGAAAATCAAAGACGAAACTGTAAAACATCTTTAT
*
126507304 GAGAGAAAATCAAAGACGGAACTGTAAAACATCTTT
1 GAGAGAAAATCAAAGACGAAACTGTAAAACATCTTT
126507340 TTGATGTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.23
Consensus pattern (38 bp):
GAGAGAAAATCAAAGACGAAACTGTAAAACATCTTTAT
Found at i:126508756 original size:42 final size:42
Alignment explanation
Indices: 126508691--126508860 Score: 252
Period size: 42 Copynumber: 4.0 Consensus size: 42
126508681 TTCAGGTGCA
* **
126508691 TCTTCGGAAACAGCAGCATCATTGGT-TCCATCAGCTGCCAAT
1 TCTTCAGAAACAGCAGCATCATTGGTCT-CATCAGCCACCAAT
*
126508733 TCTTGAGAAACAGCAGCATCATTGGTCTCATCAGCCACCAAT
1 TCTTCAGAAACAGCAGCATCATTGGTCTCATCAGCCACCAAT
* *
126508775 TCTTCAGAAACAACAGCATCGTTGGTCTCATCAGCCACCAAT
1 TCTTCAGAAACAGCAGCATCATTGGTCTCATCAGCCACCAAT
* *
126508817 TCTTCAGATACAGCAGCATCATTGGTCTCATCAGCTACCAAT
1 TCTTCAGAAACAGCAGCATCATTGGTCTCATCAGCCACCAAT
126508859 TC
1 TC
126508861 CTCATTTGGT
Statistics
Matches: 116, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
42 115 0.99
43 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (42 bp):
TCTTCAGAAACAGCAGCATCATTGGTCTCATCAGCCACCAAT
Found at i:126513151 original size:16 final size:15
Alignment explanation
Indices: 126513131--126513199 Score: 93
Period size: 16 Copynumber: 4.4 Consensus size: 15
126513121 GGGAGGAATG
126513131 GAATAGAGCTGTAAT
1 GAATAGAGCTGTAAT
*
126513146 GTAATAGAGTTGTAAT
1 G-AATAGAGCTGTAAT
126513162 GAAATAGAGCTGTAAT
1 G-AATAGAGCTGTAAT
*
126513178 AGAATAGACCTGTAAT
1 -GAATAGAGCTGTAAT
126513194 GAATAG
1 GAATAG
126513200 TTCAGTTGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
15 7 0.15
16 40 0.83
17 1 0.02
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (15 bp):
GAATAGAGCTGTAAT
Found at i:126513413 original size:26 final size:26
Alignment explanation
Indices: 126513358--126513413 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
126513348 TTTTAAATTT
* * * *
126513358 TAATAAAATTATTATTAAATATAATT
1 TAATAAAAATAATAATAAATATAATA
126513384 TAATAAAAATAATAATAAATAATAA-A
1 TAATAAAAATAATAATAAAT-ATAATA
126513410 TAAT
1 TAAT
126513414 TTAATCATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
TAATAAAAATAATAATAAATATAATA
Found at i:126515908 original size:15 final size:15
Alignment explanation
Indices: 126515897--126515934 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
126515887 GAAAATTGGG
126515897 TTGATTAAAATTGTA
1 TTGATTAAAATTGTA
126515912 TTGATTAAAATTGTA
1 TTGATTAAAATTGTA
126515927 TTGATTAA
1 TTGATTAA
126515935 GCTAAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.47
Consensus pattern (15 bp):
TTGATTAAAATTGTA
Found at i:126520836 original size:30 final size:30
Alignment explanation
Indices: 126520801--126520869 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
126520791 CTAGCCTTTG
*
126520801 CCACCATCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
126520831 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
126520861 CCACCACCA
1 CCACCACCA
126520870 CTTCTACCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:126520988 original size:17 final size:18
Alignment explanation
Indices: 126520950--126520995 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
126520940 TTTGTATTTA
*
126520950 GGGGAGGAAGAAGTTTTG
1 GGGGAGAAAGAAGTTTTG
126520968 GGGGAGAAAGAAGTTTTG
1 GGGGAGAAAGAAGTTTTG
126520986 GGGGAGAAAG
1 GGGGAGAAAG
126520996 TTATTGTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.50, T:0.17
Consensus pattern (18 bp):
GGGGAGAAAGAAGTTTTG
Found at i:126521445 original size:27 final size:26
Alignment explanation
Indices: 126521405--126521476 Score: 94
Period size: 25 Copynumber: 2.8 Consensus size: 26
126521395 ATTCTAAATT
*
126521405 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATATATTAATA
* *
126521430 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTAATA
*
126521455 CTATATTATTTATATATATATT
1 CTATATTATGTATATATATATT
126521477 TTTTCTACAT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
24 2 0.05
25 35 0.90
26 2 0.05
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (26 bp):
CTATATTATGTATATATATATTAATA
Found at i:126521459 original size:50 final size:48
Alignment explanation
Indices: 126521347--126521473 Score: 125
Period size: 48 Copynumber: 2.7 Consensus size: 48
126521337 TTGTTATTAT
* * * *
126521347 TATATTTTTAATATTATATTATATATAT-TCTTTTAATATATTAGGTA
1 TATATCTTTAATACTATATTATATATATATATTATAATATATTAGGTA
* * * * *
126521394 TAT-TC-TAAATTCTATATTACGTATATATATATTATACTATTTTATGTA
1 TATATCTTTAATACTATATTA--TATATATATATTATAATATATTAGGTA
*
126521442 TATATCTTTAATACTATATTATTTATATATAT
1 TATATCTTTAATACTATATTATATATATATAT
126521474 ATTTTTTCTA
Statistics
Matches: 63, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
45 11 0.17
46 1 0.02
47 10 0.16
48 27 0.43
49 2 0.03
50 12 0.19
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (48 bp):
TATATCTTTAATACTATATTATATATATATATTATAATATATTAGGTA
Found at i:126521474 original size:29 final size:28
Alignment explanation
Indices: 126521434--126521543 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 28
126521424 ATTATACTAT
126521434 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* ** *
126521463 TTTATATATATATTTTTTCTAC-ATGTTA
1 TTTATGTATATA-TTTTAATACTATATTA
126521491 TTTTATGTATATATTTTAAT--TATATTA
1 -TTTATGTATATATTTTAATACTATATTA
* *
126521518 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
126521543 T
1 T
126521544 GTACATATTT
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 9 0.14
26 8 0.12
27 5 0.08
28 10 0.15
29 28 0.42
30 1 0.02
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:126521474 original size:50 final size:48
Alignment explanation
Indices: 126521357--126521476 Score: 123
Period size: 50 Copynumber: 2.4 Consensus size: 48
126521347 TATATTTTTA
* * *
126521357 ATATTATATTATATATATTCTTTTAATATATTAGGTATATTCTAAATTCT
1 ATATTAT-TTATATATA-TATTATAATATATTAGGTATATTCTAAATACT
** * * * *
126521407 ATATTACGTATATATATATTATACTATTTTATGTATATATCTTTAATACT
1 ATATTATTTATATATATATTATAATATATTAGGTATAT-TC-TAAATACT
126521457 ATATTATTTATATATATATT
1 ATATTATTTATATATATATT
126521477 TTTTCTACAT
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
48 17 0.30
49 10 0.18
50 30 0.53
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (48 bp):
ATATTATTTATATATATATTATAATATATTAGGTATATTCTAAATACT
Found at i:126521544 original size:25 final size:24
Alignment explanation
Indices: 126521494--126521556 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
126521484 CATGTTATTT
*
126521494 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
126521520 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
126521545 TACATATTTTTT
1 TATGTATTTTTT
126521557 TTATATCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:126533741 original size:12 final size:12
Alignment explanation
Indices: 126533700--126533734 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
126533690 CGCCGAGGTA
126533700 TTTTTAATTTTG
1 TTTTTAATTTTG
126533712 TTTTTCAATTTTG
1 TTTTT-AATTTTG
*
126533725 CTTTTAATTT
1 TTTTTAATTT
126533735 CTTTTTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (12 bp):
TTTTTAATTTTG
Found at i:126533868 original size:99 final size:97
Alignment explanation
Indices: 126533641--126534005 Score: 425
Period size: 99 Copynumber: 3.8 Consensus size: 97
126533631 TCAATTTATG
* * * *
126533641 CTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG-TGAGCCTCGGGGCACGCCGAGGTATTTTT
1 CTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* *
126533705 AATTTTGTTTTTCAA-TTTTGCTTTTAATTTCT
65 AATTTTGTTTTTCAATTTTTGCTTTCAAATTCT
* *
126533737 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC
1 CTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
126533802 AATTTCTGTTTTTCAATTTTTGCCTTACAAATTCT
65 AATTT-TGTTTTTCAATTTTTG-CTTTCAAATTCT
126533837 GCTTTTC-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 -CTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* *
126533901 AATTTTCGTTTTTTTAATTTATG-TTTCTAAA----
65 AATTTT-G-TTTTTCAATTTTTGCTTTC-AAATTCT
* *
126533932 ------AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 CTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
*
126533991 ATTTTTGTTTGTCAA
66 A-TTTTGTTTTTCAA
126534006 AACTCAACTC
Statistics
Matches: 243, Mismatches: 16, Indels: 28
0.85 0.06 0.10
Matches are distributed among these distances:
88 6 0.02
89 58 0.24
90 4 0.02
96 34 0.14
97 31 0.13
98 14 0.06
99 70 0.29
100 21 0.09
101 5 0.02
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (97 bp):
CTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTTGTTTTTCAATTTTTGCTTTCAAATTCT
Found at i:126534040 original size:72 final size:73
Alignment explanation
Indices: 126533931--126534565 Score: 844
Period size: 72 Copynumber: 8.7 Consensus size: 73
126533921 ATGTTTCTAA
* *
126533931 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
126533996 TGTTTGTC
66 TGTTTGTC
* * * *
126534004 AAAACTCAACTCATATTGC-AAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT-
126534068 TT-TTT-TC
65 TTGTTTGTC
* *
126534075 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
126534139 TTTGTTTGTC
64 TTTGTTTGTC
* *
126534149 AAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA-TTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
126534213 TGTTTGTC
66 TGTTTGTC
* * *
126534221 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
126534286 TGTCTT-T-
66 TGT-TTGTC
** * * * *
126534293 AAAAAAAAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
*
126534358 TGTTTTTC
66 TGTTTGTC
* *
126534366 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
126534429 TTTGTTTGTC
64 TTTGTTTGTC
* * * *
126534439 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
126534504 TGTCTT-TC
66 TGT-TTGTC
* *
126534512 AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT
126534566 GTTTTCCATT
Statistics
Matches: 507, Mismatches: 36, Indels: 37
0.87 0.06 0.06
Matches are distributed among these distances:
71 42 0.08
72 231 0.46
73 113 0.22
74 45 0.09
75 38 0.07
76 38 0.07
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTT
TGTTTGTC
Found at i:126534249 original size:218 final size:221
Alignment explanation
Indices: 126533911--126534586 Score: 1043
Period size: 218 Copynumber: 3.1 Consensus size: 221
126533901 AATTTTCGTT
* * * * * *
126533911 TTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACAC
* *
126533976 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAACTCAACTCATATTGC-AAAGGTGAGTTGAGCCT
66 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
126534040 CAAGACACGTTGAGGTATTTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGATAGGTG
131 CAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
*
126534104 AGTTGAGCCTCAGGACACGCTGAGGTA
196 AGTTGAACCTCA-GACACGCTGAGGTA
*
126534131 -TTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACAC
126534194 GCTGAGGTAATTTCAA-TTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
126534258 CAAGACACGTTGAGGTATTTTCAATTTCTGTCTTT-AAAAAAA--AACTCATATTGCGAGAGGTG
131 CAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
*
126534320 AGTTGAACCTCAAGACACGTTGAGGTA
196 AGTTGAACCTC-AGACACGCTGAGGTA
* * *
126534347 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA--AGA
1 TTTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
*
126534410 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCC
65 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
126534475 TCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGG
130 TCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGG
* *
126534540 TGAGTTGAACCTCA-AGACGCTGAGGTG
194 TGAGTTGAACCTCAGACACGCTGAGGTA
*
126534567 TTTTCCATTTCTGTTT-TCAA
1 TTTTCAATTTCTGTTTGTCAA
126534587 TTTCTGTGTT
Statistics
Matches: 423, Mismatches: 22, Indels: 24
0.90 0.05 0.05
Matches are distributed among these distances:
216 42 0.10
217 65 0.15
218 195 0.46
219 58 0.14
220 32 0.08
221 1 0.00
222 30 0.07
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (221 bp):
TTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAACCTCAGACACGCTGAGGTA
Found at i:126534451 original size:290 final size:291
Alignment explanation
Indices: 126533930--126534586 Score: 990
Period size: 290 Copynumber: 2.3 Consensus size: 291
126533920 TATGTTTCTA
* * *
126533930 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
* *** *
126533995 TTGTTTGTCAAAACTCAACTCATATTGCAAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTT
66 CTGTTTGTCAAAAAAAAACTCATATTGCAAAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTT
*
126534060 TCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCT
131 TCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-GACACGCT
* * *
126534125 GAGGTATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGG
195 GAGGTATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAG
126534190 ACACGCTGAGGTAATTTCAATTT-TGT-TTGTC
260 ACACGCTGAGGTAATTTCAATTTCTGTCTT-TC
*
126534221 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
*
126534285 CTGTCTT-T-AAAAAAAAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
66 CTGT-TTGTCAAAAAAAAACTCATATTGC-AAAGGTGAGTTGAACCTCAAGACACGTTGAGGTAT
*
126534348 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-AGACG
129 TTTCAATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAGACACG
126534412 CTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
193 CTGAGGT-ATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC
* *
126534477 AAGACACGTTGAGGTATTTTCAATTTCTGTCTTTC
257 AAGACACGCTGAGGTAATTTCAATTTCTGTCTTTC
* * * *
126534512 AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAGGTGTTTTCCAT
1 --AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAAT
126534575 TTCTGTTT-TCAA
64 TTCTGTTTGTCAA
126534587 TTTCTGTGTT
Statistics
Matches: 334, Mismatches: 22, Indels: 19
0.89 0.06 0.05
Matches are distributed among these distances:
289 27 0.08
290 186 0.56
291 56 0.17
292 26 0.08
294 39 0.12
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (291 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT
CTGTTTGTCAAAAAAAAACTCATATTGCAAAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTT
TCAATTTCTTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAGACACGCTG
AGGTATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGA
CACGCTGAGGTAATTTCAATTTCTGTCTTTC
Found at i:126534600 original size:14 final size:13
Alignment explanation
Indices: 126534565--126534600 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
126534555 GACGCTGAGG
*
126534565 TGTTTTCCATTTC
1 TGTTTTCAATTTC
126534578 TGTTTTCAATTTC
1 TGTTTTCAATTTC
126534591 TGTGTTTCAA
1 TGT-TTTCAA
126534601 AAAAATCAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 15 0.71
14 6 0.29
ACGTcount: A:0.14, C:0.17, G:0.11, T:0.58
Consensus pattern (13 bp):
TGTTTTCAATTTC
Found at i:126534691 original size:15 final size:14
Alignment explanation
Indices: 126534655--126534687 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
126534645 CGCTGAGGTA
126534655 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
126534669 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
126534683 TTTTC
1 TTTTC
126534688 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:126534735 original size:89 final size:89
Alignment explanation
Indices: 126534493--126535030 Score: 478
Period size: 90 Copynumber: 6.0 Consensus size: 89
126534483 CGTTGAGGTA
* * * * *
126534493 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AG
1 TTTTCAATTTATGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCAC
* * *
126534556 ACGCTGAGGTGTTTTCCATTTCTG-
65 ACGCTGAGGTATTTTCAAATTCTGT
* * * * * *
126534580 TTTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATT--GAGTGGTGAGTTGAGCCTTGACTCA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GCA
126534643 CACGCTGAGGTATTTTCAAATTCTGT
64 CACGCTGAGGTATTTTCAAATTCTGT
* * *
126534669 TTTTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGAC
1 TTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCAC
* * *
126534733 ACGCTGAGATATTTTCAATTTCTTTTT
65 ACGCTGAGGTATTTTCAAATTC--TGT
*
126534760 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--CA
*
126534825 CACGCCGAGGTATTTTCAATTGATT-T-T
64 CACGCTGAGGTATTTTCAA---ATTCTGT
* * * *
126534852 TTTTCAATTTATGCTTTGC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-CA
** * *
126534915 CATACCGAGGTATTTTCAAAATCTGT
64 CACGCTGAGGTATTTTCAAATTCTGT
* * * ** *
126534941 TTTACAAATTT-TG-TTTT---AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTGGCTC
1 TTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCAC
* *
126535001 ACGTGCTGAGCTATTTTC-AATTTTGT
65 AC--GCTGAGGTATTTTCAAATTCTGT
126535027 TTTT
1 TTTT
126535031 AATGTCTAGT
Statistics
Matches: 381, Mismatches: 48, Indels: 45
0.80 0.10 0.09
Matches are distributed among these distances:
84 15 0.04
85 5 0.01
86 30 0.08
87 65 0.17
88 26 0.07
89 58 0.15
90 74 0.19
91 70 0.18
92 17 0.04
93 19 0.05
96 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38
Consensus pattern (89 bp):
TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACA
CGCTGAGGTATTTTCAAATTCTGT
Found at i:126535171 original size:21 final size:21
Alignment explanation
Indices: 126535145--126535184 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
126535135 TTTATATCCC
126535145 TGAAGTTACAGTGAAGCTAAT
1 TGAAGTTACAGTGAAGCTAAT
* *
126535166 TGAAGTTGCAGTGGAGCTA
1 TGAAGTTACAGTGAAGCTA
126535185 TCGATGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (21 bp):
TGAAGTTACAGTGAAGCTAAT
Found at i:126535744 original size:30 final size:30
Alignment explanation
Indices: 126535708--126535776 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
126535698 CTAGCCTTTG
126535708 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
126535738 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
126535768 CCACCACCA
1 CCACCACCA
126535777 CTTGTACCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:126536351 original size:27 final size:25
Alignment explanation
Indices: 126536311--126536381 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
126536301 ATTCTAAATT
*
126536311 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATAT-TTAATA
* *
126536336 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
*
126536361 CTATATTATTTATATATATTT
1 CTATATTATGTATATATATTT
126536382 TTTTTTCTAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 2 0.05
25 37 0.95
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:126536420 original size:22 final size:23
Alignment explanation
Indices: 126536395--126536461 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 23
126536385 TTTCTACATG
*
126536395 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
126536417 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
*
126536442 CTATATTATGTATATATTTT
1 TTATATTATGTATATATTTT
126536462 TTTATATCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
22 11 0.29
23 7 0.18
24 8 0.21
25 12 0.32
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:126536473 original size:25 final size:24
Alignment explanation
Indices: 126536400--126536468 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 24
126536390 ACATGTTATC
*
126536400 TTATGTATATA-TTTTAAT-TATA
1 TTATGTATATATTTTTTATATATA
* *
126536422 TTATGTATGTATTTTTTACACTATA
1 TTATGTATATATTTTTTATA-TATA
126536447 TTATGTATATATTTTTT-TATAT
1 TTATGTATATATTTTTTATATAT
126536469 CTATTTCATA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
22 10 0.26
23 8 0.21
24 1 0.03
25 20 0.51
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.61
Consensus pattern (24 bp):
TTATGTATATATTTTTTATATATA
Found at i:126542725 original size:26 final size:26
Alignment explanation
Indices: 126542673--126542722 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
126542663 AAGTCGTCAA
126542673 AGGGAATAATTATATTCATTAAAAAG
1 AGGGAATAATTATATTCATTAAAAAG
126542699 AGGGAATAATTATATTC-TTAAAAA
1 AGGGAATAATTATATTCATTAAAAA
126542723 AGAAAAAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.50, C:0.04, G:0.14, T:0.32
Consensus pattern (26 bp):
AGGGAATAATTATATTCATTAAAAAG
Found at i:126542816 original size:13 final size:13
Alignment explanation
Indices: 126542790--126542827 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
126542780 AAAAAATAAG
*
126542790 TATTTTT-TTAAA
1 TATTTTTATTTAA
126542802 TATTTTTATTTAA
1 TATTTTTATTTAA
*
126542815 TATTTATATTTAA
1 TATTTTTATTTAA
126542828 CATAATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTTTTATTTAA
Found at i:126546870 original size:18 final size:22
Alignment explanation
Indices: 126546849--126546894 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 22
126546839 TTCTATGTTA
126546849 TTATTATCT-TTA-T-AT-TTT
1 TTATTATCTATTATTAATCTTT
126546867 TTATTA-CTATTATTAATCTTT
1 TTATTATCTATTATTAATCTTT
126546888 TTATTAT
1 TTATTAT
126546895 TACTAACGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.09
18 9 0.39
19 1 0.04
20 2 0.09
21 9 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (22 bp):
TTATTATCTATTATTAATCTTT
Found at i:126546872 original size:21 final size:21
Alignment explanation
Indices: 126546846--126546896 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
126546836 ATTTTCTATG
126546846 TTATTATTATCT-TTATAT-TTT
1 TTATTATTAT-TATTA-ATCTTT
*
126546867 TTATTACTATTATTAATCTTT
1 TTATTATTATTATTAATCTTT
126546888 TTATTATTA
1 TTATTATTA
126546897 CTAACGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (21 bp):
TTATTATTATTATTAATCTTT
Found at i:126547276 original size:11 final size:11
Alignment explanation
Indices: 126547262--126547287 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
126547252 ATCTTTTTGG
126547262 TATTATGTATA
1 TATTATGTATA
126547273 TATTATGTATA
1 TATTATGTATA
126547284 TATT
1 TATT
126547288 TTTAATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (11 bp):
TATTATGTATA
Found at i:126547642 original size:24 final size:23
Alignment explanation
Indices: 126547580--126547642 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 23
126547570 TATTATTTTA
*
126547580 TTTTAATATGATTATGTATATATT
1 TTTTAATATG-TTATGTATACATT
*
126547604 TTTCATATATGTTATGTACATACATT
1 TTTTA-ATATGTTATGT--ATACATT
126547630 TTTTAATAT-TTAT
1 TTTTAATATGTTAT
126547643 TTTATATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 14 0.42
25 9 0.27
26 10 0.30
ACGTcount: A:0.32, C:0.05, G:0.06, T:0.57
Consensus pattern (23 bp):
TTTTAATATGTTATGTATACATT
Found at i:126549121 original size:3 final size:3
Alignment explanation
Indices: 126549113--126549175 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
126549103 ATTAACAATG
* * * *
126549113 ATA ATA ATA ATA ATA GTA ATA ATA TTA A-A ATA CAAA AAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
*
126549158 A-A AT- ATA ATA AAA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
126549176 GAAGTAATTA
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
2 6 0.12
3 40 0.83
4 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:126558849 original size:3 final size:3
Alignment explanation
Indices: 126558841--126558879 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
126558831 CCGTTATTTA
126558841 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
126558880 ATTTAATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:126558989 original size:21 final size:21
Alignment explanation
Indices: 126558965--126559004 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
126558955 GTATATATTA
* *
126558965 TGTATATTTCTAATACTATAG
1 TGTACATTTCTAACACTATAG
126558986 TGTACATTTCTAACACTAT
1 TGTACATTTCTAACACTAT
126559005 TATTATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.45
Consensus pattern (21 bp):
TGTACATTTCTAACACTATAG
Found at i:126559385 original size:26 final size:26
Alignment explanation
Indices: 126559356--126559463 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
126559346 TGATACAAAT
* *
126559356 TGATAATGGATTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
*
126559382 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
126559408 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
126559434 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
126559460 TGAT
1 TGAT
126559464 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:126561514 original size:26 final size:26
Alignment explanation
Indices: 126561476--126561526 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
126561466 GGTTTCTTGG
*
126561476 TTTTTTTTTGGGGGGTTAGGTTTTTC
1 TTTTTTTTGGGGGGGTTAGGTTTTTC
126561502 TTTTTTTTGGGGGGGTTAGGTTTTT
1 TTTTTTTTGGGGGGGTTAGGTTTTT
126561527 TGTGGGAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.04, C:0.02, G:0.33, T:0.61
Consensus pattern (26 bp):
TTTTTTTTGGGGGGGTTAGGTTTTTC
Found at i:126562439 original size:95 final size:89
Alignment explanation
Indices: 126562225--126562623 Score: 294
Period size: 87 Copynumber: 4.4 Consensus size: 89
126562215 ACGTGAGCCA
* ** * *
126562225 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT---AAAACAAAATTT-GTAAAACAGATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAAAACAAAATTTAAAAAAAAAAATT
*** *
126562286 ATGAAAATACCTCGATATGTGACCCG
66 -TGAAAATACCTCGGCGTGTG-GCCG
* * * *
126562312 AAGCTCAACTCACCTCTCGTAATATGAGTTGATTTTT-GCAAAGCATAAATTTTAAAAAAAAAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAAAACA-AAA-TTTAAAAAAAAAA-
126562376 ATCAATTGAAAATACCTCGGCGTGTGGCCTG
63 AT---TTGAAAATACCTCGGCGTGTGGCC-G
* * *
126562407 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACAAAATTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGGAAAAACAAAATTTAAAAAAAAAA
* * *
126562472 ATTTGAAAATACCTCAGCGTGTGAGTCA
63 ATTTGAAAATACCTCGGCGTGTG-GCCG
* * * * * * * *
126562500 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGGAAAAACA-AAATTTAAAAAAAAAAA
* * * * *
126562565 -TGGAAAACACCTCAGCGTCT---TG
64 TTTGAAAATACCTCGGCGTGTGGCCG
* *
126562587 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
126562624 TTGAAAGACA
Statistics
Matches: 256, Mismatches: 40, Indels: 33
0.78 0.12 0.10
Matches are distributed among these distances:
86 5 0.02
87 64 0.25
89 5 0.02
90 3 0.01
91 33 0.13
92 15 0.06
93 52 0.20
94 4 0.02
95 48 0.19
96 3 0.01
97 10 0.04
98 8 0.03
99 6 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (89 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAAAACAAAATTTAAAAAAAAAAATT
TGAAAATACCTCGGCGTGTGGCCG
Found at i:126562480 original size:13 final size:14
Alignment explanation
Indices: 126562448--126562480 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
126562438 ATTTTTTTTG
126562448 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
126562462 GAAAAACAGAATTT
1 GAAAAACAAAATTT
126562476 GAAAA
1 GAAAA
126562481 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:126562624 original size:87 final size:88
Alignment explanation
Indices: 126562405--126562644 Score: 313
Period size: 87 Copynumber: 2.7 Consensus size: 88
126562395 GCGTGTGGCC
*
126562405 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACA-AAATTTGAAAAAC
1 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTT-GAAAAACAGAAA-TTGAAAAAC
* * * *
126562469 AGAATTTGAAAATACCTCAGCGTGTGAG
63 AGAAATGGAAAACACCTCAGCGTCT--G
* * * *
126562497 TCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAG
1 T-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAAACAG
126562562 AAATGGAAAACACCTCAGCGTCT-
65 AAATGGAAAACACCTCAGCGTCTG
* *
126562585 TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAA
126562645 TACCTCAACG
Statistics
Matches: 132, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
87 54 0.41
88 1 0.01
91 36 0.27
92 11 0.08
93 30 0.23
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (88 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAAACAGA
AATGGAAAACACCTCAGCGTCTG
Found at i:126562680 original size:75 final size:73
Alignment explanation
Indices: 126562558--126562698 Score: 219
Period size: 75 Copynumber: 1.9 Consensus size: 73
126562548 AAATTGAAGA
*
126562558 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
126562623 TTTGAAAG
66 TTTGAAAG
* * * *
126562631 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
126562696 TTT
64 TTT
126562699 GAAACTTAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 18 0.30
74 1 0.02
75 42 0.69
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (73 bp):
ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
TTTGAAAG
Found at i:126562861 original size:81 final size:75
Alignment explanation
Indices: 126562747--126562942 Score: 241
Period size: 76 Copynumber: 2.5 Consensus size: 75
126562737 ATATGTGACT
* *
126562747 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAAAAT
1 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG------AAAAT
* * *
126562812 ACCTCAGTGTGTGATC
60 ACCTCAGCGCGTGAGC
* * *
126562828 TGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATAGCT
1 -CAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCT
126562892 CAGCGCGTGAGC
64 CAGCGCGTGAGC
126562904 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
126562943 TTTTGAAAGG
Statistics
Matches: 103, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
75 7 0.07
76 47 0.46
81 30 0.29
82 19 0.18
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (75 bp):
CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCA
GCGCGTGAGC
Found at i:126562931 original size:76 final size:78
Alignment explanation
Indices: 126562741--126563291 Score: 309
Period size: 79 Copynumber: 7.0 Consensus size: 78
126562731 GCCTCGATAT
* *
126562741 GTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG---
* *
126562804 AAAAAAATACCTCAGTGT
63 --AAAAATACCTCAGCGC
* * *
126562822 GTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTG-AA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
*
126562885 AATAGCTCAGCGC
66 AATACCTCAGCGC
** *
126562898 GTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCACAAATTG
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAAAACAGAAATTG
** **
126562962 AAAAACAGAAATTGAAAATACCTCGGC
63 ----A-A-AAA-T--ACCT-CAGC-GC
* * * * * *
126562989 GTGTGAC-CTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG
1 GTGAG-CTC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTG
*
126563052 -AAATTACCTCAGC-C
63 AAAAATACCTCAGCGC
** *
126563066 -TGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG-A
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAA
126563128 AAATACCTCA--GC
65 AAATACCTCAGCGC
* * ** ** * *
126563140 ATG-TCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTAAAAAAAAACAGAAAT
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTT---GAAAAACAGAAAT
126563204 TG-AAAATACCTCA--GC
61 TGAAAAATACCTCAGCGC
* * ** * ** * *
126563219 ATG-TCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGA-ATTTTG-AAAACAAAAATTG-AA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
*
126563280 ATTACCTCAGCG
66 AATACCTCAGCG
126563292 TGTCTTGAGG
Statistics
Matches: 393, Mismatches: 46, Indels: 69
0.77 0.09 0.14
Matches are distributed among these distances:
72 22 0.06
74 42 0.11
75 57 0.15
76 61 0.16
77 1 0.00
79 86 0.22
80 2 0.01
81 34 0.09
82 22 0.06
83 2 0.01
84 1 0.00
85 1 0.00
86 3 0.01
87 1 0.00
89 2 0.01
90 11 0.03
91 14 0.04
92 2 0.01
93 29 0.07
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (78 bp):
GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
AATACCTCAGCGC
Found at i:126562981 original size:93 final size:93
Alignment explanation
Indices: 126562866--126563037 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
126562856 AGTTGATTTT
* * *
126562866 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCTCTCACAATA
*
126562930 TGAGTTGATTTTTTTTTGAAAGGCACAAA
65 CGAGTTGATTTTTTTTTGAAAGGCACAAA
* * * *
126562959 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCACAATAC
126563024 GAGTTGATTTTTTT
66 GAGTTGATTTTTTT
126563038 GACAACAGAA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (93 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTTTTTTTTGAAAGGCACAAA
Found at i:126563030 original size:169 final size:167
Alignment explanation
Indices: 126562807--126563111 Score: 452
Period size: 169 Copynumber: 1.8 Consensus size: 167
126562797 ATTGAAAAAA
* * * *
126562807 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
*
126562871 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCAGC-C-TG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
126562935 TGATTTTTTTTTGAAAGGCACAAATTGAAAAACAGAAATTG
127 TGATTTTTTTTTGAAAGGCACAAATTGAAAAACAGAAATTG
* * * *
126562976 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * *
126563041 AACAGAAATTGAAATTACCTCAGCCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCCTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
126563106 TTTTTT
131 TTTTTT
126563112 GAAAAACAGA
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
166 2 0.02
167 41 0.34
168 1 0.01
169 69 0.57
170 9 0.07
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (167 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCCTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTTGAAAGGCACAAATTGAAAAACAGAAATTG
Found at i:126563154 original size:75 final size:75
Alignment explanation
Indices: 126562959--126563310 Score: 433
Period size: 79 Copynumber: 4.7 Consensus size: 75
126562949 AAGGCACAAA
* * * * *
126562959 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCACCTCTCACAATAT
126563024 GAGTTGATTTTT
64 GAGTTGATTTTT
* * * * *
126563036 TTG-ACAACAGAAATTGAAATTACCTCAGCCTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCACAATATGA
126563100 GTTGATTTTT
66 GTTGATTTTT
**
126563110 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCACAATATGA
126563175 GTTGATTTTTT
66 GTTGA-TTTTT
* * ** *
126563186 TTAAAAAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATA
1 TT---GAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCACAATA
*
126563251 TGAGTTGA--ATT
63 TGAGTTGATTTTT
* * *
126563262 TTG-AAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCA
126563311 TTTTGAACAG
Statistics
Matches: 247, Mismatches: 23, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
72 42 0.17
74 41 0.17
75 59 0.24
76 37 0.15
77 3 0.01
79 65 0.26
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTT
Found at i:126563286 original size:151 final size:148
Alignment explanation
Indices: 126562959--126563313 Score: 462
Period size: 151 Copynumber: 2.4 Consensus size: 148
126562949 AAGGCACAAA
* * ***
126562959 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATAC
* * * * *
126563024 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCCTGTCCTGAGGCTCAACTCACCTC
64 GAGTTGATTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTC
*
126563089 TCGCAATATGAGTTGATTTTT
129 TCGCAATATGAGTTGA-TATT
* *
126563110 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
* *
126563175 GTTGATTTTTTTTAAAAAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAAT
66 GTTGA-TTTTTTT----AAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAAC
*
126563240 TTCTCGCAATATGAGTTGA-ATT
126 CTCTCGCAATATGAGTTGATATT
* *
126563262 TTG-AAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
126563314 TGAACAGAAA
Statistics
Matches: 180, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
149 31 0.17
150 7 0.04
151 78 0.43
152 5 0.03
154 59 0.33
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
GTTGATTTTTTTAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCTC
GCAATATGAGTTGATATT
Found at i:126563333 original size:49 final size:49
Alignment explanation
Indices: 126563267--126563362 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
126563257 GAATTTTGAA
*
126563267 AACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
*
126563316 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
126563363 CTCGCAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (49 bp):
AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:126563534 original size:54 final size:55
Alignment explanation
Indices: 126563434--126563539 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
126563424 GAACCGAGGC
* *
126563434 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
126563488 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
126563540 CATAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:126563543 original size:13 final size:13
Alignment explanation
Indices: 126563519--126563552 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
126563509 GAGTTGATTC
126563519 TTGAACAACATAAA
1 TTGAA-AACATAAA
126563533 TTGAAAACATAAA
1 TTGAAAACATAAA
126563546 TTGAAAA
1 TTGAAAA
126563553 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.59, C:0.09, G:0.09, T:0.24
Consensus pattern (13 bp):
TTGAAAACATAAA
Found at i:126563585 original size:140 final size:140
Alignment explanation
Indices: 126563390--126564016 Score: 1157
Period size: 140 Copynumber: 4.5 Consensus size: 140
126563380 ATTTTTTTTT
126563390 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
126563454 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
*
126563519 TTGAACAACATAAA
127 TTGAACAACGTAAA
*
126563533 TTGAAAACATAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
126563598 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAATCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
126563663 ACAACGTAAA
131 ACAACGTAAA
*
126563673 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
126563738 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
126563803 ACAACGTAAA
131 ACAACGTAAA
*
126563813 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
126563878 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
126563943 ACAACGTAAA
131 ACAACGTAAA
126563953 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
126564017 CTTGAAATTA
Statistics
Matches: 472, Mismatches: 11, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
139 3 0.01
140 441 0.93
142 22 0.05
143 6 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:126563814 original size:54 final size:54
Alignment explanation
Indices: 126563714--126563819 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
126563704 GACCTGAGGC
*
126563714 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
126563768 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
126563820 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Done.