Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 422 of 425
Found at i:128214690 original size:41 final size:42
Alignment explanation
Indices: 128214602--128214693 Score: 159
Period size: 41 Copynumber: 2.2 Consensus size: 42
128214592 ACTTTAATCT
*
128214602 ACTCCACTGAAACTTCAAGGAGATCTTCTGAGGCTTCGATCA
1 ACTCCACTGAAACTTCAAGGAGATCTGCTGAGGCTTCGATCA
*
128214644 ACTCCACTGAAACTTCAAGGAGAT-TGCTGCGGCTTCGATCA
1 ACTCCACTGAAACTTCAAGGAGATCTGCTGAGGCTTCGATCA
128214685 ACTCCACTG
1 ACTCCACTG
128214694 CTGTTTCAGG
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 24 0.50
42 24 0.50
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (42 bp):
ACTCCACTGAAACTTCAAGGAGATCTGCTGAGGCTTCGATCA
Found at i:128214869 original size:85 final size:86
Alignment explanation
Indices: 128214726--128215007 Score: 317
Period size: 85 Copynumber: 3.3 Consensus size: 86
128214716 AATTTTTAGT
* * * * * * *
128214726 CTGTTACCCTACTGCTTAAGGGATTACGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCTTAG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACTGCTTAG
** * *
128214789 GG-TTTTAGATCTG-TATCTCAAC
64 GGAGATAAGATCTGCAAT-TCAAC
128214811 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
*
128214876 AGATAAGATCTGCAATTTAAC
66 AGATAAGATCTGCAATTCAAC
* *
128214897 CTGTTACCC-ACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTAC-ACACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
****
128214960 -GATAAGATCTGCAATTTGGT
66 AGATAAGATCTGCAATTCAAC
*
128214980 CTGTTTCCCTACTGCTTAGGGGTTTAAG
1 CTGTTACCCTACTGCTTAGGGGTTTAAG
128215008 ACCTTATGAC
Statistics
Matches: 174, Mismatches: 18, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
83 25 0.14
84 38 0.22
85 88 0.51
86 21 0.12
87 2 0.01
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (86 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGCAATTCAAC
Found at i:128214872 original size:44 final size:44
Alignment explanation
Indices: 128214819--128214960 Score: 127
Period size: 43 Copynumber: 3.3 Consensus size: 44
128214809 ACCTGTTACC
128214819 CTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
* * * * * * *
128214863 CTACTGCTTAGGGAG-ATAA-GATCTGCAAT-TT-AACCTGTTACC-
1 CTACTGCTTAGGG-GTTTAAGGTTCTTC-GTCTTCGATCTGCT-CCA
* *
128214905 C-ACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTAC-ACA
1 CTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
128214947 CTACTGCTTAGGGG
1 CTACTGCTTAGGGG
128214961 ATAAGATCTG
Statistics
Matches: 73, Mismatches: 16, Indels: 19
0.68 0.15 0.18
Matches are distributed among these distances:
40 1 0.01
41 16 0.22
42 14 0.19
43 24 0.33
44 17 0.23
45 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (44 bp):
CTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
Found at i:128215005 original size:84 final size:86
Alignment explanation
Indices: 128214808--128215007 Score: 325
Period size: 85 Copynumber: 2.4 Consensus size: 86
128214798 TCTGTATCTC
* *
128214808 AACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTA
1 AACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTACTACACTACTGCTTA
128214873 GGGAGATAAGATCTGCAATTT
66 GGGAGATAAGATCTGCAATTT
128214894 AACCTGTTACCC-ACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTAC-ACACTACTGCTTA
1 AACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTACTACACTACTGCTTA
128214957 GGG-GATAAGATCTGCAATTT
66 GGGAGATAAGATCTGCAATTT
*** *
128214977 GGTCTGTTTCCCTACTGCTTAGGGGTTTAAG
1 AACCTGTTACCCTACTGCTTAGGGGTTTAAG
128215008 ACCTTATGAC
Statistics
Matches: 107, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
83 25 0.23
84 33 0.31
85 37 0.35
86 12 0.11
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (86 bp):
AACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTACTACACTACTGCTTA
GGGAGATAAGATCTGCAATTT
Found at i:128215253 original size:44 final size:44
Alignment explanation
Indices: 128215199--128215360 Score: 134
Period size: 44 Copynumber: 3.7 Consensus size: 44
128215189 CTTCTTTGAT
* * *
128215199 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGCAATTTTCAAC
1 CTGTTACCCTACTGCTTAGGGGGATAAGATCTGCAATTTTCGAC
* * * * * * *
128215243 CTATTACCCTACTTCTTAGGGGGTTAAGGTCTGTAAATTT-GGC
1 CTGTTACCCTACTGCTTAGGGGGATAAGATCTGCAATTTTCGAC
* * * *
128215286 C-GTTACCCTACTGCTTAGGGGGTTAA-AGCT-CATTATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGATAAGATCTGCA--ATTTTCGAC
* *
128215329 CTGTTTCCCTACTGCTTAGGGTGATAAGATCT
1 CTGTTACCCTACTGCTTAGGGGGATAAGATCT
128215361 AGGAATTACT
Statistics
Matches: 90, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 26 0.29
43 4 0.04
44 54 0.60
45 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGATAAGATCTGCAATTTTCGAC
Found at i:128227955 original size:25 final size:24
Alignment explanation
Indices: 128227900--128227957 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
128227890 ATATATATGT
*
128227900 ATATAATACTAAGTAATAATAATA
1 ATATAATACCAAGTAATAATAATA
*
128227924 ATAATAATACCATGCTAATAAATAA-A
1 AT-ATAATACCAAG-TAAT-AATAATA
128227950 ATATAATA
1 ATATAATA
128227958 ATGATAGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 2 0.07
25 15 0.52
26 7 0.24
27 5 0.17
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (24 bp):
ATATAATACCAAGTAATAATAATA
Found at i:128228034 original size:18 final size:18
Alignment explanation
Indices: 128228003--128228043 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
128227993 TATTAAGACT
*
128228003 AAAA-TAAAATAATGAGA-
1 AAAAGTAAAAAAATG-GAC
128228020 AAAAGTAAAAAAATGGAC
1 AAAAGTAAAAAAATGGAC
128228038 AAAAGT
1 AAAAGT
128228044 GAATTAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (18 bp):
AAAAGTAAAAAAATGGAC
Found at i:128230391 original size:23 final size:23
Alignment explanation
Indices: 128230365--128230413 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
128230355 AAATTCTAAA
*
128230365 TTAAAGCAAATAATAATAATTAT
1 TTAAAGAAAATAATAATAATTAT
* *
128230388 TTAAAGAAAATTATAATATTTAT
1 TTAAAGAAAATAATAATAATTAT
128230411 TTA
1 TTA
128230414 CTTTACATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (23 bp):
TTAAAGAAAATAATAATAATTAT
Found at i:128233658 original size:8 final size:8
Alignment explanation
Indices: 128233626--128233657 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
128233616 TTTTCAGCTC
128233626 TGTTTTTT
1 TGTTTTTT
128233634 TGTTTTTT
1 TGTTTTTT
128233642 TGTTTTTT
1 TGTTTTTT
128233650 T-TTTTTT
1 TGTTTTTT
128233657 T
1 T
128233658 TACTTTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (8 bp):
TGTTTTTT
Found at i:128237329 original size:4 final size:4
Alignment explanation
Indices: 128237320--128237371 Score: 59
Period size: 4 Copynumber: 13.0 Consensus size: 4
128237310 TCTTTTGTCA
* * * * *
128237320 ATGT ATGT ATGT ATGC ATGT ATGC ATGT ATGC ATGT ATGC ATGT ATGC
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
128237368 ATGT
1 ATGT
128237372 CATTTGTTTT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (4 bp):
ATGT
Found at i:128237333 original size:8 final size:8
Alignment explanation
Indices: 128237320--128237371 Score: 95
Period size: 8 Copynumber: 6.5 Consensus size: 8
128237310 TCTTTTGTCA
*
128237320 ATGTATGT
1 ATGTATGC
128237328 ATGTATGC
1 ATGTATGC
128237336 ATGTATGC
1 ATGTATGC
128237344 ATGTATGC
1 ATGTATGC
128237352 ATGTATGC
1 ATGTATGC
128237360 ATGTATGC
1 ATGTATGC
128237368 ATGT
1 ATGT
128237372 CATTTGTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
8 43 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (8 bp):
ATGTATGC
Found at i:128258007 original size:17 final size:15
Alignment explanation
Indices: 128257972--128258001 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
128257962 AATTTATATC
128257972 TTTAATTATAAAAAA
1 TTTAATTATAAAAAA
*
128257987 TTTAATTTTAAAAAA
1 TTTAATTATAAAAAA
128258002 GATTTATACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTAATTATAAAAAA
Found at i:128260687 original size:21 final size:21
Alignment explanation
Indices: 128260637--128260689 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
128260627 TCTAAACACG
* * *
128260637 TGTGTTTAAATATGTAGCATA
1 TGTGTTGAGATATGTAACATA
*
128260658 TGTGTTGAGATATGTAATATA
1 TGTGTTGAGATATGTAACATA
128260679 TGTGTTGAGAT
1 TGTGTTGAGAT
128260690 TCCGACCCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.43
Consensus pattern (21 bp):
TGTGTTGAGATATGTAACATA
Found at i:128269459 original size:4 final size:4
Alignment explanation
Indices: 128269450--128269477 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
128269440 GGGGTTCCAC
128269450 CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA
128269478 TATATAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:128272319 original size:32 final size:32
Alignment explanation
Indices: 128272280--128272342 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
128272270 AACCTTTTTA
128272280 AAAAACAGTTAAAGAAAAAAAAGGTCTCGCTT
1 AAAAACAGTTAAAGAAAAAAAAGGTCTCGCTT
*
128272312 AAAAACAGTTAAAGAAAAGAAAGGTCTCGCT
1 AAAAACAGTTAAAGAAAAAAAAGGTCTCGCT
128272343 GTACTTACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.17
Consensus pattern (32 bp):
AAAAACAGTTAAAGAAAAAAAAGGTCTCGCTT
Found at i:128273223 original size:31 final size:34
Alignment explanation
Indices: 128273157--128273234 Score: 90
Period size: 31 Copynumber: 2.4 Consensus size: 34
128273147 TTAATTAAAA
* * *
128273157 TTTTTAAAATTTTGAGAGAGATTTAATCAAAATT
1 TTTTTAAAAATTTCAGAGAGATTAAATCAAAATT
128273191 TTTTTAAAAATTTCA-AGAGA-TAAAT-AAAATT
1 TTTTTAAAAATTTCAGAGAGATTAAATCAAAATT
* *
128273222 TTCTAAAAAATTT
1 TTTTTAAAAATTT
128273235 AGGGGGCCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
31 17 0.44
32 4 0.10
33 5 0.13
34 13 0.33
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.42
Consensus pattern (34 bp):
TTTTTAAAAATTTCAGAGAGATTAAATCAAAATT
Found at i:128283054 original size:12 final size:12
Alignment explanation
Indices: 128283039--128283063 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
128283029 CTTCTAAACC
128283039 TTATTTATTCCA
1 TTATTTATTCCA
128283051 TTATTTATTCCA
1 TTATTTATTCCA
128283063 T
1 T
128283064 GGTTAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATTTATTCCA
Found at i:128284066 original size:31 final size:30
Alignment explanation
Indices: 128284018--128284083 Score: 87
Period size: 31 Copynumber: 2.2 Consensus size: 30
128284008 TATAAAATGC
* *
128284018 ATTTTGAGAATTCTAATTAAGCCTTATAAA
1 ATTTTGACAATTCTAATTAAACCTTATAAA
* *
128284048 AGTTTTGACAATTTTAATTAAACTTTATAAA
1 A-TTTTGACAATTCTAATTAAACCTTATAAA
128284079 ATTTT
1 ATTTT
128284084 CAAAACTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 5 0.16
31 26 0.84
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (30 bp):
ATTTTGACAATTCTAATTAAACCTTATAAA
Found at i:128284917 original size:15 final size:17
Alignment explanation
Indices: 128284884--128284926 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
128284874 TTTAATTAAT
128284884 AATATATTTAAAAAGTA
1 AATATATTTAAAAAGTA
*
128284901 AATATA-TTATAAA-TA
1 AATATATTTAAAAAGTA
*
128284916 AATAGATTTAA
1 AATATATTTAA
128284927 TTAGTATGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 7 0.32
16 9 0.41
17 6 0.27
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (17 bp):
AATATATTTAAAAAGTA
Found at i:128286118 original size:2 final size:2
Alignment explanation
Indices: 128286111--128286141 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
128286101 TTGACCTAAA
128286111 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
128286142 AAAGAAGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:128291282 original size:28 final size:29
Alignment explanation
Indices: 128291246--128291307 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
128291236 TCACTCAAGT
* *
128291246 ATTAGGAAATA-TACACTCTAG-TCACTTA
1 ATTATGAAATATTACAAT-TAGATCACTTA
*
128291274 ATTATGAAATATTACAATTTGATCACTTA
1 ATTATGAAATATTACAATTAGATCACTTA
128291303 ATTAT
1 ATTAT
128291308 TTGAAATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 12 0.41
29 17 0.59
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (29 bp):
ATTATGAAATATTACAATTAGATCACTTA
Found at i:128291337 original size:21 final size:22
Alignment explanation
Indices: 128291292--128291342 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
128291282 ATATTACAAT
*
128291292 TTGATCACTTAATTATTTGAAA
1 TTGATCATTTAATTATTTGAAA
128291314 TTGATCATTTAATTATTT-AAA
1 TTGATCATTTAATTATTTGAAA
*
128291335 TTGCTCAT
1 TTGATCAT
128291343 CTGGTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (22 bp):
TTGATCATTTAATTATTTGAAA
Found at i:128291446 original size:18 final size:18
Alignment explanation
Indices: 128291423--128291458 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
128291413 CATCGTACCC
*
128291423 TTGTTGGCAGTTATGCCA
1 TTGTTGGCAATTATGCCA
128291441 TTGTTGGCAATTATGCCA
1 TTGTTGGCAATTATGCCA
128291459 CTAATAATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.39
Consensus pattern (18 bp):
TTGTTGGCAATTATGCCA
Found at i:128304970 original size:6 final size:6
Alignment explanation
Indices: 128304949--128304984 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
128304939 TCCTCCACGC
* *
128304949 CCTCTA CCCCTA CCTCTC CCTCTA CCTCTA CCTCTA
1 CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA
128304985 TTAGCTGATC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.14, C:0.56, G:0.00, T:0.31
Consensus pattern (6 bp):
CCTCTA
Found at i:128304971 original size:18 final size:18
Alignment explanation
Indices: 128304948--128304983 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
128304938 TTCCTCCACG
128304948 CCCTCTACCCCTACCTCT
1 CCCTCTACCCCTACCTCT
*
128304966 CCCTCTACCTCTACCTCT
1 CCCTCTACCCCTACCTCT
128304984 ATTAGCTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.58, G:0.00, T:0.31
Consensus pattern (18 bp):
CCCTCTACCCCTACCTCT
Found at i:128307124 original size:32 final size:32
Alignment explanation
Indices: 128307088--128307151 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
128307078 ATTACATGAC
128307088 AAGTATAAATAAATGCTCGATCAAGGTAAAGG
1 AAGTATAAATAAATGCTCGATCAAGGTAAAGG
* * *
128307120 AAGTATAAATATATGTTTGATCAAGGTAAAGG
1 AAGTATAAATAAATGCTCGATCAAGGTAAAGG
128307152 TTTTGTTCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.45, C:0.06, G:0.22, T:0.27
Consensus pattern (32 bp):
AAGTATAAATAAATGCTCGATCAAGGTAAAGG
Found at i:128307962 original size:19 final size:21
Alignment explanation
Indices: 128307934--128307976 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
128307924 TTAAAACATG
*
128307934 ACATGAGT-AATATATT-ATT
1 ACATGAGTAAACATATTGATT
*
128307953 ACATGTGTAAACATATTGATT
1 ACATGAGTAAACATATTGATT
128307974 ACA
1 ACA
128307977 CACAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 7 0.35
21 6 0.30
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (21 bp):
ACATGAGTAAACATATTGATT
Found at i:128311241 original size:29 final size:30
Alignment explanation
Indices: 128311189--128311245 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
128311179 TCTTGGGACT
* *
128311189 AAATTTTGGGAGGTTTAGTAATTTTTTTAA
1 AAATTTTAGGAGGTTTAATAATTTTTTTAA
*
128311219 AAATTTTAGGA-GTTTAATGATTTTTTT
1 AAATTTTAGGAGGTTTAATAATTTTTTT
128311246 TTTAATTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.53
Consensus pattern (30 bp):
AAATTTTAGGAGGTTTAATAATTTTTTTAA
Found at i:128311958 original size:31 final size:31
Alignment explanation
Indices: 128311923--128311983 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
128311913 GCTCAGTGAT
* ** *
128311923 TTAAATAAAAATTTTTGAATAGTTCAATAAC
1 TTAAATAAAAACTTTCAAATAATTCAATAAC
*
128311954 TTAAATGAAAACTTTCAAATAATTCAATAA
1 TTAAATAAAAACTTTCAAATAATTCAATAA
128311984 TCATATTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.36
Consensus pattern (31 bp):
TTAAATAAAAACTTTCAAATAATTCAATAAC
Found at i:128315732 original size:15 final size:15
Alignment explanation
Indices: 128315714--128315754 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
128315704 CTTTTCTAGA
128315714 TCTTCCTCTTCTTCC
1 TCTTCCTCTTCTTCC
* *
128315729 TCTTTCTTTTCTTCC
1 TCTTCCTCTTCTTCC
*
128315744 TCTTCTTCTTC
1 TCTTCCTCTTC
128315755 ATTTTCTTCG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (15 bp):
TCTTCCTCTTCTTCC
Found at i:128315753 original size:21 final size:21
Alignment explanation
Indices: 128315723--128315763 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
128315713 ATCTTCCTCT
128315723 TCTTCCTCTTTC-TTTTCTTCC
1 TCTTCCTC-TTCATTTTCTTCC
*
128315744 TCTTCTTCTTCATTTTCTTC
1 TCTTCCTCTTCATTTTCTTC
128315764 GGGAGGATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.63
Consensus pattern (21 bp):
TCTTCCTCTTCATTTTCTTCC
Found at i:128317496 original size:20 final size:20
Alignment explanation
Indices: 128317471--128317510 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
128317461 TCTATGGTGG
128317471 ATTTAATCATTTTAATTTTA
1 ATTTAATCATTTTAATTTTA
**
128317491 ATTTAATTTTTTTAATTTTA
1 ATTTAATCATTTTAATTTTA
128317511 TAATTTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
ATTTAATCATTTTAATTTTA
Found at i:128320522 original size:13 final size:13
Alignment explanation
Indices: 128320504--128320565 Score: 70
Period size: 13 Copynumber: 4.8 Consensus size: 13
128320494 TTTGGCAATA
128320504 TTTTTGAAAAGTG
1 TTTTTGAAAAGTG
*
128320517 TTTTTGAGAAGTG
1 TTTTTGAAAAGTG
* * *
128320530 TTGTGGAAAAGTA
1 TTTTTGAAAAGTG
* *
128320543 CTTTTGAGAAGTG
1 TTTTTGAAAAGTG
128320556 TTTTTGAAAA
1 TTTTTGAAAA
128320566 ATTTGGTTTA
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.42
Consensus pattern (13 bp):
TTTTTGAAAAGTG
Found at i:128320564 original size:26 final size:26
Alignment explanation
Indices: 128320504--128320565 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
128320494 TTTGGCAATA
**
128320504 TTTTTGAAAAGTGTTTTTGAGAAGTG
1 TTTTTGAAAAGTACTTTTGAGAAGTG
* *
128320530 TTGTGGAAAAGTACTTTTGAGAAGTG
1 TTTTTGAAAAGTACTTTTGAGAAGTG
128320556 TTTTTGAAAA
1 TTTTTGAAAA
128320566 ATTTGGTTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.42
Consensus pattern (26 bp):
TTTTTGAAAAGTACTTTTGAGAAGTG
Found at i:128322066 original size:120 final size:120
Alignment explanation
Indices: 128321853--128322092 Score: 471
Period size: 120 Copynumber: 2.0 Consensus size: 120
128321843 AAAAAAAAGC
128321853 CTAAACAACTTTTATATTATCAAAATTCTGCCCAAATACCTCCACAATTCTTTAACACTCCTAAC
1 CTAAACAACTTTTATATTATCAAAATTCTGCCCAAATACCTCCACAATTCTTTAACACTCCTAAC
128321918 TATCATTAGAGGCTCCTTACACTTCATATAAACTACTTCCTACACCAGGCCTTGT
66 TATCATTAGAGGCTCCTTACACTTCATATAAACTACTTCCTACACCAGGCCTTGT
*
128321973 CTAAACAACTTTTATATTATCAAAATTCTGCCCAAATTCCTCCACAATTCTTTAACACTCCTAAC
1 CTAAACAACTTTTATATTATCAAAATTCTGCCCAAATACCTCCACAATTCTTTAACACTCCTAAC
128322038 TATCATTAGAGGCTCCTTACACTTCATATAAACTACTTCCTACACCAGGCCTTGT
66 TATCATTAGAGGCTCCTTACACTTCATATAAACTACTTCCTACACCAGGCCTTGT
128322093 ATCAACATGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (120 bp):
CTAAACAACTTTTATATTATCAAAATTCTGCCCAAATACCTCCACAATTCTTTAACACTCCTAAC
TATCATTAGAGGCTCCTTACACTTCATATAAACTACTTCCTACACCAGGCCTTGT
Found at i:128325032 original size:116 final size:116
Alignment explanation
Indices: 128324810--128325035 Score: 312
Period size: 116 Copynumber: 1.9 Consensus size: 116
128324800 TATTTGTGAT
* ** *
128324810 GCTATGGAATTTTTAAGAAGATTACTTGTTTAAAATTAGAAATTAAGGAAGTTAATTTCTCTTTG
1 GCTATGGAATTTTCAAGAAGATTACTTGTTTAAAATTAGAAACAAAGGAAGTTAATTGCTCTTTG
*
128324875 CTTTGATTTCATGGAAAACCCAAATTGACTTCTTATATGAAAGCCGCCGTA
66 CTTTGATTTCATGGAAAACCCAAATTGACTTATTATATGAAAGCCGCCGTA
* * *
128324926 GCTATGGCATTTTCAAG-AGATTTCTTGTTTAAAATTAGAGACAAAGGAAGTTAATTGCTCTTT-
1 GCTATGGAATTTTCAAGAAGATTACTTGTTTAAAATTAGAAACAAAGGAAGTTAATTGCTCTTTG
* ** *
128324989 CTTTTAGCTTTCATGGAAAATTCAAATTGACTTATTATTTGAAAGCC
66 C-TTT-GATTTCATGGAAAACCCAAATTGACTTATTATATGAAAGCC
128325036 TCGCTAACTC
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
114 1 0.01
115 44 0.46
116 51 0.53
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (116 bp):
GCTATGGAATTTTCAAGAAGATTACTTGTTTAAAATTAGAAACAAAGGAAGTTAATTGCTCTTTG
CTTTGATTTCATGGAAAACCCAAATTGACTTATTATATGAAAGCCGCCGTA
Found at i:128326704 original size:5 final size:6
Alignment explanation
Indices: 128326686--128326711 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
128326676 ACAATCTGAA
128326686 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
128326712 TGTATTTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:128331313 original size:14 final size:15
Alignment explanation
Indices: 128331294--128331326 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
128331284 AAATTATGAA
*
128331294 TTTTATTCGTA-ATT
1 TTTTATTCATATATT
128331308 TTTTATTCATATATT
1 TTTTATTCATATATT
128331323 TTTT
1 TTTT
128331327 TAATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.70
Consensus pattern (15 bp):
TTTTATTCATATATT
Found at i:128331633 original size:18 final size:18
Alignment explanation
Indices: 128331610--128331645 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
128331600 TATAGGGATT
*
128331610 AAAATTGACTAATTTAAA
1 AAAATTGACTAAATTAAA
128331628 AAAATTGACTAAATTAAA
1 AAAATTGACTAAATTAAA
128331646 GTATATAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (18 bp):
AAAATTGACTAAATTAAA
Found at i:128335072 original size:21 final size:21
Alignment explanation
Indices: 128335026--128335072 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
128335016 TTATATGTGA
128335026 ATTATTAATTAATATATTATT
1 ATTATTAATTAATATATTATT
*
128335047 TTTATTAAATATAATAT-TT-TT
1 ATTATT-AAT-TAATATATTATT
128335068 ATTAT
1 ATTAT
128335073 ATGTGAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 11 0.50
22 5 0.23
23 6 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATTAATTAATATATTATT
Found at i:128335081 original size:19 final size:18
Alignment explanation
Indices: 128335036--128335071 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
128335026 ATTATTAATT
*
128335036 AATATATTATTTTTATTA
1 AATATAATATTTTTATTA
128335054 AATATAATATTTTTATTA
1 AATATAATATTTTTATTA
128335072 TATGTGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
AATATAATATTTTTATTA
Found at i:128336640 original size:39 final size:39
Alignment explanation
Indices: 128336587--128336664 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
128336577 GGTGGTCAAC
*
128336587 ATAATAAAGGGCAACAAAATCCACCAGATTCAGAACCCA
1 ATAATAAAGGGCAACAAAATCCAACAGATTCAGAACCCA
*
128336626 ATAATCAAGGGCAACAAAATCCAACAGATTCAGAACCCA
1 ATAATAAAGGGCAACAAAATCCAACAGATTCAGAACCCA
128336665 TTCCTCCACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.49, C:0.26, G:0.13, T:0.13
Consensus pattern (39 bp):
ATAATAAAGGGCAACAAAATCCAACAGATTCAGAACCCA
Found at i:128346244 original size:22 final size:22
Alignment explanation
Indices: 128346202--128346244 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
128346192 AAAATTATTG
* *
128346202 AATTGAATTCAAGTTATTTTTA
1 AATTGAATTCAAGATACTTTTA
128346224 AATTGAATTCAA-ATAGCTTTT
1 AATTGAATTCAAGATA-CTTTT
128346245 GAGTGCTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.47
Consensus pattern (22 bp):
AATTGAATTCAAGATACTTTTA
Found at i:128348543 original size:12 final size:12
Alignment explanation
Indices: 128348526--128348557 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
128348516 CGAACAAATC
*
128348526 ATGATGATCATG
1 ATGATGATCACG
128348538 ATGATGATCACG
1 ATGATGATCACG
128348550 ATGATGAT
1 ATGATGAT
128348558 GATCATAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.31
Consensus pattern (12 bp):
ATGATGATCACG
Found at i:128350436 original size:21 final size:21
Alignment explanation
Indices: 128350412--128350454 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
128350402 GAATGTTTTG
128350412 TTCGTTGTTTATGTCTGAATA
1 TTCGTTGTTTATGTCTGAATA
128350433 TTCGTTGTTTATGTCTGAATA
1 TTCGTTGTTTATGTCTGAATA
128350454 T
1 T
128350455 ATGTCGAACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.09, G:0.19, T:0.53
Consensus pattern (21 bp):
TTCGTTGTTTATGTCTGAATA
Found at i:128355579 original size:31 final size:31
Alignment explanation
Indices: 128355534--128355602 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
128355524 AGGAAATTTT
* *
128355534 AATAGTCTAATGACTTAAATAAAAACTTTCA
1 AATAGTTTAGTGACTTAAATAAAAACTTTCA
*
128355565 AGTAGTTTAGTGACTTAAATAAAAACTTTCA
1 AATAGTTTAGTGACTTAAATAAAAACTTTCA
128355596 AATAGTT
1 AATAGTT
128355603 CAATGATCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (31 bp):
AATAGTTTAGTGACTTAAATAAAAACTTTCA
Found at i:128357186 original size:18 final size:18
Alignment explanation
Indices: 128357144--128357179 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
128357134 AGCAAAAAAA
*
128357144 AAAAAAAAAAAAGCGCAG
1 AAAAAAAAAAAAGAGCAG
128357162 AAAAAAAAAAAAGAGCAG
1 AAAAAAAAAAAAGAGCAG
128357180 CTAAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.75, C:0.08, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAAAGAGCAG
Found at i:128359624 original size:28 final size:28
Alignment explanation
Indices: 128359584--128359639 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
128359574 CTATAAGGTG
128359584 TTGAGGAATTCAAACTTTTTGATAGTGA
1 TTGAGGAATTCAAACTTTTTGATAGTGA
*
128359612 TTGAGGAATTCAAACTTTTTTATAGTGA
1 TTGAGGAATTCAAACTTTTTGATAGTGA
128359640 AGTCTGACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (28 bp):
TTGAGGAATTCAAACTTTTTGATAGTGA
Found at i:128362983 original size:105 final size:103
Alignment explanation
Indices: 128362769--128362983 Score: 313
Period size: 103 Copynumber: 2.1 Consensus size: 103
128362759 TAGTCTCTCA
* * * * *
128362769 TTTGTAATTTGATGTAATGTCATTGCAAAGTTCATCCTCAGTCCATTATTGATTCCGAATATTGT
1 TTTGAAATTTGATATAATGTCATTGCAAAGTTCATCCTCAATCCATTATTGATTCAGAATATTGA
*
128362834 TTAGGAACCATTGTTTCATGGAAAATGTCTTTCGCATT
66 TTAGGAACCATTGTTTCATGGAAAATGTCTTTCACATT
* * *
128362872 TTTGAAATTTGATATGATGTCATTGCAAAGTTCATCCTCAATCTATTATTTGATTCATAATATTC
1 TTTGAAATTTGATATAATGTCATTGCAAAGTTCATCCTCAATCCATTA-TTGATTCAGAATATT-
* *
128362937 GATTAGGAACCATTTTTTCATGGAAAATGTTTTTCACATT
64 GATTAGGAACCATTGTTTCATGGAAAATGTCTTTCACATT
128362977 TTTGAAA
1 TTTGAAA
128362984 GCATTAGATA
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
103 43 0.43
104 13 0.13
105 43 0.43
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (103 bp):
TTTGAAATTTGATATAATGTCATTGCAAAGTTCATCCTCAATCCATTATTGATTCAGAATATTGA
TTAGGAACCATTGTTTCATGGAAAATGTCTTTCACATT
Found at i:128370455 original size:25 final size:25
Alignment explanation
Indices: 128370421--128370471 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
128370411 AAGAAGTAAT
128370421 TGGTTCTTTGACACAAAACGGAACA
1 TGGTTCTTTGACACAAAACGGAACA
*
128370446 TGGTTCTTTGATACAAAACGGAACA
1 TGGTTCTTTGACACAAAACGGAACA
128370471 T
1 T
128370472 ATTCGCTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (25 bp):
TGGTTCTTTGACACAAAACGGAACA
Found at i:128375718 original size:166 final size:166
Alignment explanation
Indices: 128375456--128375768 Score: 475
Period size: 166 Copynumber: 1.9 Consensus size: 166
128375446 CACCATATTC
* * * *
128375456 CAATACATAGATGACAATCAAAGATGGATATAGATAAAAATCCAAGAGCGAAAACAAGATTTTAA
1 CAATACATAGATGACAAACAAAAATGAATACAGATAAAAATCCAAGAGCGAAAACAAGATTTTAA
* * * *
128375521 GCATTCAACACACCATATTTCAATGCATTGATCTAGTGTGCAAAAATTATAACACATAATTTAAT
66 ACATTCAACACACCATATTTCAATACATTGATCTAGTATGCAAAAATTAAAACACATAATTTAAT
* *
128375586 AAGTCGACGAACAAAGACATTCAAGATGCTACAGTT
131 AAGTCAACAAACAAAGACATTCAAGATGCTACAGTT
* * *
128375622 CAATACATAGATGACAAACAAAAATGAATGCAGATCAAAATCCAAGAGC-AAAGACACGATTTTA
1 CAATACATAGATGACAAACAAAAATGAATACAGATAAAAATCCAAGAGCGAAA-ACAAGATTTTA
* *
128375686 AACATTCAACACACCATATTTCGATACATTGATCTAGTATGCAAAATTTAAAACACATAATTTAA
65 AACATTCAACACACCATATTTCAATACATTGATCTAGTATGCAAAAATTAAAACACATAATTTAA
128375751 TAAGTCAACAAACAAAGA
130 TAAGTCAACAAACAAAGA
128375769 TGAATATAAA
Statistics
Matches: 131, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
165 3 0.02
166 128 0.98
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.24
Consensus pattern (166 bp):
CAATACATAGATGACAAACAAAAATGAATACAGATAAAAATCCAAGAGCGAAAACAAGATTTTAA
ACATTCAACACACCATATTTCAATACATTGATCTAGTATGCAAAAATTAAAACACATAATTTAAT
AAGTCAACAAACAAAGACATTCAAGATGCTACAGTT
Found at i:128376770 original size:31 final size:32
Alignment explanation
Indices: 128376713--128376774 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
128376703 AAATAGTTAC
*
128376713 TAAATTATTCAAATGTTTTTTATTTAAGTCAT
1 TAAACTATTCAAATGTTTTTTATTTAAGTCAT
*
128376745 TAAACTATTCAAATG-TTTTTCTTTAAGTCA
1 TAAACTATTCAAATGTTTTTTATTTAAGTCA
128376775 CTGGGCTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 14 0.50
32 14 0.50
ACGTcount: A:0.34, C:0.10, G:0.06, T:0.50
Consensus pattern (32 bp):
TAAACTATTCAAATGTTTTTTATTTAAGTCAT
Found at i:128376784 original size:31 final size:30
Alignment explanation
Indices: 128376711--128376800 Score: 94
Period size: 31 Copynumber: 3.0 Consensus size: 30
128376701 TAAAATAGTT
*
128376711 ACTAAATTATTCAAATGTTTTTTATTTAAGTC
1 ACTAAACTATTCAAATG-TTTTT-TTTAAGTC
*
128376743 ATTAAACTATTCAAATGTTTTTCTTTAAGTC
1 ACTAAACTATTCAAATGTTTTT-TTTAAGTC
***
128376774 ACTGGGCTATT-AAA-GTTTTTTTTAAGT
1 ACTAAACTATTCAAATGTTTTTTTTAAGT
128376801 GTAGCTAGCA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
28 7 0.14
29 6 0.12
30 3 0.06
31 20 0.39
32 15 0.29
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (30 bp):
ACTAAACTATTCAAATGTTTTTTTTAAGTC
Found at i:128378620 original size:21 final size:21
Alignment explanation
Indices: 128378594--128378636 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
128378584 AAGACAAAGT
128378594 TTTTCCCTAATTAGATTTGAC
1 TTTTCCCTAATTAGATTTGAC
128378615 TTTTCCCTAATTAGATTTGAC
1 TTTTCCCTAATTAGATTTGAC
128378636 T
1 T
128378637 GATGACATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.19, G:0.09, T:0.49
Consensus pattern (21 bp):
TTTTCCCTAATTAGATTTGAC
Found at i:128380622 original size:21 final size:21
Alignment explanation
Indices: 128380596--128380635 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
128380586 GATGGTGATA
128380596 AAAAG-AGTAAAAAGAAGAAAG
1 AAAAGAAG-AAAAAGAAGAAAG
*
128380617 AAAAGAAGAATAAGAAGAA
1 AAAAGAAGAAAAAGAAGAA
128380636 TAAGAAGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (21 bp):
AAAAGAAGAAAAAGAAGAAAG
Found at i:128380656 original size:21 final size:21
Alignment explanation
Indices: 128380632--128380680 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
128380622 AAGAATAAGA
*
128380632 AGAATAAGAAGGAG-AAAAAAG
1 AGAAAAAGAA-GAGCAAAAAAG
128380653 AGAAAAAGAAGAGCAAAAAAG
1 AGAAAAAGAAGAGCAAAAAAG
*
128380674 AAAAAAA
1 AGAAAAA
128380681 ATACGATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.73, C:0.02, G:0.22, T:0.02
Consensus pattern (21 bp):
AGAAAAAGAAGAGCAAAAAAG
Found at i:128380680 original size:30 final size:31
Alignment explanation
Indices: 128380605--128380681 Score: 75
Period size: 30 Copynumber: 2.5 Consensus size: 31
128380595 AAAAAGAGTA
* * *
128380605 AAAAGAAGAAAGAAAAGAAGAATAAGAAGAAT
1 AAAA-AAGAAAAAAAAGAAGAAAAAGAAGAAC
* * * *
128380637 AAGAAGGAGAAAAAAG-AGAAAAAGAAGAGC
1 AAAAAAGAAAAAAAAGAAGAAAAAGAAGAAC
128380667 AAAAAAGAAAAAAAA
1 AAAAAAGAAAAAAAA
128380682 TACGATGAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
30 23 0.66
31 9 0.26
32 3 0.09
ACGTcount: A:0.74, C:0.01, G:0.22, T:0.03
Consensus pattern (31 bp):
AAAAAAGAAAAAAAAGAAGAAAAAGAAGAAC
Found at i:128384631 original size:21 final size:20
Alignment explanation
Indices: 128384593--128384634 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
128384583 TCGTTGGTAA
128384593 AAATAAATAAATAAATATAT
1 AAATAAATAAATAAATATAT
* *
128384613 AAATATAATATATATATATAT
1 AAATA-AATAAATAAATATAT
128384634 A
1 A
128384635 TATTTGATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATAAATAAATAAATATAT
Found at i:128388738 original size:435 final size:433
Alignment explanation
Indices: 128387615--128388908 Score: 1760
Period size: 436 Copynumber: 3.0 Consensus size: 433
128387605 TTTTTTCATT
* ** * *
128387615 AAAAGTTCTTAATGTTAGTG-GTGTCCGCGATTCTTTAATGGATT-GCCTCGCATTAATACCTAC
1 AAAAGTTCATAATGTTAGTGCGT-TCC-CGATTCTCCAATGGATTGGCC-CACAATAATACCTAC
* *
128387678 AACTTCTCCCAATTCAACTAGGTCACCATGAGTGGGGCT-TCGACCATATCATAATAGTGATATG
63 AACTTCTCCCAATTCAACTA-GTCACCTTGAGTGGGGCTCT-GACCATAACATAATAGTGATATG
* * * * *
128387742 TCAAAATTGCAAGTTGATATGACATTAC-TAGTAATAATATGTTTGTAATATGATATTTTGGAAA
126 TGAAAATAGCAAGTTGATATAACATTACATA-TAATAATATGTTAGTAATATCATATTTTGGAAA
* * * *
128387806 TATTAGAATTGAACTTAATTAATTTATCATTTACTGTTTGATCATGATTAAAATTTTAAAATTCA
190 TAATAGAATTGAACTTAATGAATTTAACATTTATTGTTTGATCATGATTAAAATTTTAAAATTCA
* * * *
128387871 CAAAGCATATGACTAAAATTAAGGTGT-GGGACTAAATCCATAATTTAAATATAATATAGGGATT
255 CAAAGTATATGACTAAAATTAAAGTGTGGGGACTAAATCCATAATTTAAACATAATATAGGGACT
* ** * * *
128387935 AATAGCAAAATTTAACCTTTTATTAACTAATCTTCTTGTAAACACGGAGTGCTAATAAAAAAAAA
320 GATAATAAAATTTAACCTTTTATTAACTAATCTTCCTGTAAACAAGGAGAGCTAAT--AAAAAAA
*
128388000 CCCAAAATATTTTTATTAAGGTCAAATTCTACTAAATACTCTATCGATATG
383 CCCAAAATATTTTTATTAAGGTCAAATTCTACTAAATACTCTACCGATATG
* * * * * * *
128388051 AACAGTTCATAATCTTAGTTGCGTTCCCAATTCTCCAATAGATTGCCCCACAATAATACCCACGA
1 AAAAGTTCATAATGTTAG-TGCGTTCCCGATTCTCCAATGGATTGGCCCACAATAATACCTACAA
* * *
128388116 CTTCTCCCAATTCAATTACGTCA-TTGTGAGTGGGGCTCTAACCATAACATAATAGTGATATGTG
65 CTTCTCCCAATTCAACTA-GTCACCT-TGAGTGGGGCTCTGACCATAACATAATAGTGATATGTG
* * * **
128388180 AAAATAGCAAGTTAATATAACATTATACATAATAATATGTTAGTAGCATCATATTTTGGAAATAA
128 AAAATAGCAAGTTGATATAACATTACATATAATAATATGTTAGTAATATCATATTTTGGAAATAA
* * *
128388245 TAGAATTGACCTTAATGAATTTAACATTTATTCTTTGATCATGATTAAAATTTTAAAATTCATAA
193 TAGAATTGAACTTAATGAATTTAACATTTATTGTTTGATCATGATTAAAATTTTAAAATTCACAA
128388310 AGTATATGACTAAAATTAAAGTGTGGGGACTAAATCCATAATTTAAACATAATATAGGGACTGAT
258 AGTATATGACTAAAATTAAAGTGTGGGGACTAAATCCATAATTTAAACATAATATAGGGACTGAT
* *
128388375 AATAAAATTTAACATTTTATTAACTAACCTTCCTGTAAACAAGGAGAGCTAATAAAAAAACCCAA
323 AATAAAATTTAACCTTTTATTAACTAATCTTCCTGTAAACAAGGAGAGCTAATAAAAAAACCCAA
* *
128388440 AATAATTTTATTAAGGTCAAATTCTACTAAATACTCTGCC-AGTATG
388 AATATTTTTATTAAGGTCAAATTCTACTAAATACTCTACCGA-TATG
* * *
128388486 AAAAGTTCCTAATGTTAGTAGCGTTCCCGATTCTCCAATGGATTGGCCCACAGTAATACATACAA
1 AAAAGTTCATAATGTTAGT-GCGTTCCCGATTCTCCAATGGATTGGCCCACAATAATACCTACAA
*
128388551 CTTCTCCCAATTCAACTAGATCACCTTGA-TGGGGCTCTGACCATAACATAATACTGATATGTGA
65 CTTCTCCCAATTCAACTAG-TCACCTTGAGTGGGGCTCTGACCATAACATAATAGTGATATGTGA
* *
128388615 ATATAACAAGTTGATATAACATTACATATAATAATATGTTAGTAATATCATATTTTGGAAATAAT
129 AAATAGCAAGTTGATATAACATTACATATAATAATATGTTAGTAATATCATATTTTGGAAATAAT
*
128388680 AGAATTGAACTTAATGAATTTAACATTTTTTTGTTTGATCATGATTAAAATTTTAAAATTCACAA
194 AGAATTGAACTTAATGAATTTAACA-TTTATTGTTTGATCATGATTAAAATTTTAAAATTCACAA
* * *
128388745 AGTATATGACGTACTAAAATTAAAGTGTGAGGACTAAATCTATAATTTAAACATAGTATAGGGAC
258 AGTATAT---G-ACTAAAATTAAAGTGTGGGGACTAAATCCATAATTTAAACATAATATAGGGAC
* * * *
128388810 TGATAATAAAATTGAACCTTTTATTAACTAATCTTCCTCTAAACAAGGA-ACTCTATTAGAAAAA
319 TGATAATAAAATTTAACCTTTTATTAACTAATCTTCCTGTAAACAAGGAGA-GCTAATA-AAAAA
*
128388874 ACCCAAAATATTTTTGTTAAGGTCAAATTCTACTA
382 ACCCAAAATATTTTTATTAAGGTCAAATTCTACTA
128388909 TTTGTTCATT
Statistics
Matches: 754, Mismatches: 86, Indels: 32
0.86 0.10 0.04
Matches are distributed among these distances:
434 118 0.16
435 172 0.23
436 230 0.31
437 92 0.12
438 4 0.01
439 100 0.13
440 38 0.05
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (433 bp):
AAAAGTTCATAATGTTAGTGCGTTCCCGATTCTCCAATGGATTGGCCCACAATAATACCTACAAC
TTCTCCCAATTCAACTAGTCACCTTGAGTGGGGCTCTGACCATAACATAATAGTGATATGTGAAA
ATAGCAAGTTGATATAACATTACATATAATAATATGTTAGTAATATCATATTTTGGAAATAATAG
AATTGAACTTAATGAATTTAACATTTATTGTTTGATCATGATTAAAATTTTAAAATTCACAAAGT
ATATGACTAAAATTAAAGTGTGGGGACTAAATCCATAATTTAAACATAATATAGGGACTGATAAT
AAAATTTAACCTTTTATTAACTAATCTTCCTGTAAACAAGGAGAGCTAATAAAAAAACCCAAAAT
ATTTTTATTAAGGTCAAATTCTACTAAATACTCTACCGATATG
Found at i:128389210 original size:63 final size:64
Alignment explanation
Indices: 128389126--128389255 Score: 174
Period size: 64 Copynumber: 2.0 Consensus size: 64
128389116 ATTTACACAT
* * * * *
128389126 AATATAGGGACTAATAGC-AAA-ATTTAACCTTTTTATTAACTAAACTTCCTCTAAACAAGGAAC
1 AATAAAGGGACTAACAACAAAATATTTAA-CATTTTACTAACTAAACTTCCTCTAAACAAGGAAC
* *
128389189 AATAAAGGGACTAACAACAAAATATTTAACATTTTACTAACTAATCTTCCTCTAAACAAGGAGC
1 AATAAAGGGACTAACAACAAAATATTTAACATTTTACTAACTAAACTTCCTCTAAACAAGGAAC
128389253 AAT
1 AAT
128389256 CACTAATTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
63 15 0.26
64 37 0.64
65 6 0.10
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.28
Consensus pattern (64 bp):
AATAAAGGGACTAACAACAAAATATTTAACATTTTACTAACTAAACTTCCTCTAAACAAGGAAC
Found at i:128392529 original size:30 final size:30
Alignment explanation
Indices: 128392474--128392535 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
128392464 CTTAACAAGC
*
128392474 AAATACCTCTAAAATAATAATAAAATTAAT
1 AAATACCTCTAAAATAATAACAAAATTAAT
* * *
128392504 AAATGCCTTTAAAGTAATAACAAAATTAAT
1 AAATACCTCTAAAATAATAACAAAATTAAT
128392534 AA
1 AA
128392536 TAAAATAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.29
Consensus pattern (30 bp):
AAATACCTCTAAAATAATAACAAAATTAAT
Found at i:128397582 original size:43 final size:42
Alignment explanation
Indices: 128397501--128397629 Score: 154
Period size: 42 Copynumber: 3.0 Consensus size: 42
128397491 TCATATAAAT
* *
128397501 TTCAGTTTAACCCTA-AGGGTTTTCCGTTTAGCTCTTTTGGAGC
1 TTCAGTTTAACCCTATTGGG-TTTCCGTTCAGCTCTTTT-GAGC
* * *
128397544 TTCGGTTTAACCCTATTGGGTTTCAGTTCAGCTTTTTTGAGC
1 TTCAGTTTAACCCTATTGGGTTTCCGTTCAGCTCTTTTGAGC
* *
128397586 TTCAGTTTAACCCT-TCTGGGTTTCCGTTCAGGTCTTATGAGC
1 TTCAGTTTAACCCTAT-TGGGTTTCCGTTCAGCTCTTTTGAGC
128397628 TT
1 TT
128397630 TCGATCTACC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.01
42 41 0.55
43 29 0.39
44 3 0.04
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.43
Consensus pattern (42 bp):
TTCAGTTTAACCCTATTGGGTTTCCGTTCAGCTCTTTTGAGC
Found at i:128399573 original size:9 final size:9
Alignment explanation
Indices: 128399559--128399626 Score: 73
Period size: 9 Copynumber: 7.6 Consensus size: 9
128399549 ATAAGTATAA
128399559 AATTAACCG
1 AATTAACCG
*
128399568 AATTAATCG
1 AATTAACCG
* **
128399577 AATTATCTT
1 AATTAACCG
*
128399586 AATTACCCG
1 AATTAACCG
* *
128399595 AATTACCCA
1 AATTAACCG
128399604 AATTAACCG
1 AATTAACCG
128399613 AATTAACCG
1 AATTAACCG
128399622 AATTA
1 AATTA
128399627 TTTGTATAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:128403122 original size:120 final size:120
Alignment explanation
Indices: 128402964--128403219 Score: 360
Period size: 120 Copynumber: 2.1 Consensus size: 120
128402954 TTTCCAATTT
* *
128402964 AAATTTAT--TTAAAATTTTAATATTTAAATCTTGACTCATGAAAAAGGATATATTACATGATTT
1 AAATTTATAATTAAAATATTAATATTTAAATCTTGACTCATGAAAAAGGAAATATTACATGATTT
128403027 ATTTATTTTCAAGATTAAAGAGAAATGCATTTT-TAAAAATTATAT-AAAAATTAA
66 ATTTATTTTCAAGATTAAAGAGAAATGCATTTTCT-AAAATTATATAAAAAATTAA
* *
128403081 AAATTTATAATTAAAATATTAACTATTTAAATCTTGACTCATGGAACAGGAAATATTACATGATT
1 AAATTTATAATTAAAATATTAA-TATTTAAATCTTGACTCATGAAAAAGGAAATATTACATGATT
* * ** *
128403146 TGTTTATTTTCAAGATTAAATAGAAATGCATTTTCTTGAATTATATAAAAAATTAT
65 TATTTATTTTCAAGATTAAAGAGAAATGCATTTTCTAAAATTATATAAAAAATTAA
128403202 AAA-TTATAAATTATAAAT
1 AAATTTAT-AATTA-AAAT
128403220 TATAATTAAA
Statistics
Matches: 123, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
117 8 0.07
119 11 0.09
120 83 0.67
121 17 0.14
122 4 0.03
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.41
Consensus pattern (120 bp):
AAATTTATAATTAAAATATTAATATTTAAATCTTGACTCATGAAAAAGGAAATATTACATGATTT
ATTTATTTTCAAGATTAAAGAGAAATGCATTTTCTAAAATTATATAAAAAATTAA
Found at i:128403207 original size:7 final size:7
Alignment explanation
Indices: 128403195--128403224 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
128403185 ATTATATAAA
128403195 AAATTAT
1 AAATTAT
128403202 AAATTAT
1 AAATTAT
128403209 AAATTAT
1 AAATTAT
128403216 AAATTAT
1 AAATTAT
128403223 AA
1 AA
128403225 TTAAATATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATTAT
Found at i:128403448 original size:27 final size:27
Alignment explanation
Indices: 128403417--128403505 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
128403407 AAAACAGAAG
128403417 AAGAAACTGAATCAACTAGAAAACTAA
1 AAGAAACTGAATCAACTAGAAAACTAA
* * * *
128403444 AAGAAACTTAACCAA--ATAAAACAGAA
1 AAGAAACTGAATCAACTAGAAAAC-TAA
128403470 GAAGAAACTGAATCAACTAGAAAACTAA
1 -AAGAAACTGAATCAACTAGAAAACTAA
128403498 AAGAAACT
1 AAGAAACT
128403506 CAGGCCTGGA
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
25 6 0.12
26 2 0.04
27 34 0.68
28 2 0.04
29 6 0.12
ACGTcount: A:0.61, C:0.15, G:0.11, T:0.13
Consensus pattern (27 bp):
AAGAAACTGAATCAACTAGAAAACTAA
Found at i:128403463 original size:54 final size:54
Alignment explanation
Indices: 128403398--128403505 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
128403388 TAAAGCAAAA
*
128403398 TAACCTAATAAAACAGAAGAAGAAACTGAATCAACTAGAAAACTAAAAGAAACT
1 TAACCAAATAAAACAGAAGAAGAAACTGAATCAACTAGAAAACTAAAAGAAACT
128403452 TAACCAAATAAAACAGAAGAAGAAACTGAATCAACTAGAAAACTAAAAGAAACT
1 TAACCAAATAAAACAGAAGAAGAAACTGAATCAACTAGAAAACTAAAAGAAACT
128403506 CAGGCCTGGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.60, C:0.15, G:0.11, T:0.14
Consensus pattern (54 bp):
TAACCAAATAAAACAGAAGAAGAAACTGAATCAACTAGAAAACTAAAAGAAACT
Found at i:128406742 original size:32 final size:33
Alignment explanation
Indices: 128406692--128406757 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
128406682 CTATGAAAGA
*
128406692 ATGTCGTATTTTTTTACCTAACCGAAGCCAATT
1 ATGTCATATTTTTTTACCTAACCGAAGCCAATT
128406725 ATGTCATA-TTTTTTACCTAACCGAAGCCAATT
1 ATGTCATATTTTTTTACCTAACCGAAGCCAATT
128406757 A
1 A
128406758 GTTCTCGCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 25 0.78
33 7 0.22
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (33 bp):
ATGTCATATTTTTTTACCTAACCGAAGCCAATT
Found at i:128414129 original size:7 final size:7
Alignment explanation
Indices: 128414117--128414146 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
128414107 ATTATAGTAA
128414117 TATTTTT
1 TATTTTT
128414124 TATTTTT
1 TATTTTT
128414131 TATTTTTT
1 TA-TTTTT
128414139 TATTTTT
1 TATTTTT
128414146 T
1 T
128414147 GTGTGATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TATTTTT
Found at i:128414292 original size:14 final size:14
Alignment explanation
Indices: 128414273--128414299 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
128414263 GATATGTATA
128414273 TATAATATATTTAC
1 TATAATATATTTAC
128414287 TATAATATATTTA
1 TATAATATATTTA
128414300 AAAATGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
TATAATATATTTAC
Found at i:128414493 original size:40 final size:40
Alignment explanation
Indices: 128414448--128414528 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
128414438 TTTTATTTTT
*
128414448 AGTTTCTAACTC-AAAAAATGTGAACCGTTCTTTTATAATC
1 AGTTTCTAACTCAAAAAAATGCGAACCGTTC-TTTATAATC
128414488 AGTTTCTAACTCAAAAAAATGCGAACCGTTCTTTATAATC
1 AGTTTCTAACTCAAAAAAATGCGAACCGTTCTTTATAATC
128414528 A
1 A
128414529 AGGCCTAATC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 22 0.56
41 17 0.44
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.35
Consensus pattern (40 bp):
AGTTTCTAACTCAAAAAAATGCGAACCGTTCTTTATAATC
Found at i:128418140 original size:17 final size:15
Alignment explanation
Indices: 128418089--128418144 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 15
128418079 TTTAATTTAG
128418089 TTTT-ATTTGGGTTAT
1 TTTTAATTT-GGTTAT
* *
128418104 TTTGAATTTGGTCAT
1 TTTTAATTTGGTTAT
*
128418119 ATTTAGATTTGAGTTAT
1 TTTTA-ATTTG-GTTAT
128418136 TTTTAATTT
1 TTTTAATTT
128418145 TAATTAATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 11 0.34
16 13 0.41
17 8 0.25
ACGTcount: A:0.21, C:0.02, G:0.16, T:0.61
Consensus pattern (15 bp):
TTTTAATTTGGTTAT
Found at i:128420564 original size:10 final size:10
Alignment explanation
Indices: 128420549--128420597 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
128420539 TAATTCTCAT
128420549 AAAAAAATAA
1 AAAAAAATAA
*
128420559 AAAAAAATTGA
1 AAAAAAA-TAA
*
128420570 AAAAAAATCA
1 AAAAAAATAA
*
128420580 GAAAAAATAGA
1 AAAAAAATA-A
128420591 AAAAAAA
1 AAAAAAA
128420598 AGAATTATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
10 16 0.50
11 16 0.50
ACGTcount: A:0.82, C:0.02, G:0.06, T:0.10
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:128420575 original size:21 final size:21
Alignment explanation
Indices: 128420549--128420597 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
128420539 TAATTCTCAT
*
128420549 AAAAAAATAAAAAAAAATTGA
1 AAAAAAATAAAAAAAAATAGA
* *
128420570 AAAAAAATCAGAAAAAATAGA
1 AAAAAAATAAAAAAAAATAGA
128420591 AAAAAAA
1 AAAAAAA
128420598 AGAATTATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.82, C:0.02, G:0.06, T:0.10
Consensus pattern (21 bp):
AAAAAAATAAAAAAAAATAGA
Found at i:128421732 original size:19 final size:19
Alignment explanation
Indices: 128421695--128421733 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
128421685 CTTTGTCTCC
128421695 ATAAATTTGATAGATAAAAA
1 ATAAATTT-ATAGATAAAAA
128421715 ATAAATTT-TAGAATAAAAA
1 ATAAATTTATAG-ATAAAAA
128421734 GTCTATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.17
19 7 0.39
20 8 0.44
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (19 bp):
ATAAATTTATAGATAAAAA
Found at i:128424918 original size:2 final size:2
Alignment explanation
Indices: 128424911--128424938 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
128424901 ATTTTATTTA
128424911 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128424939 GTAAGGAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128430459 original size:2 final size:2
Alignment explanation
Indices: 128430452--128430494 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
128430442 AATGCATCAA
* *
128430452 AT AT AT AT AT AT AT AT AT AT AT GT GT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128430494 A
1 A
128430495 CCTTGCTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:128431580 original size:16 final size:16
Alignment explanation
Indices: 128431559--128431641 Score: 60
Period size: 16 Copynumber: 5.1 Consensus size: 16
128431549 TTAGATTGGT
* *
128431559 AATTAAGATATATTTA
1 AATTAAAATAAATTTA
128431575 AATTAAAATAAATTTA
1 AATTAAAATAAATTTA
* *
128431591 AATTTAAACATTAA-TCA
1 AA-TTAAA-ATAAATTTA
* * ** *
128431608 CATTCAACGAGATTTA
1 AATTAAAATAAATTTA
128431624 AATTAAAATAAATTTA
1 AATTAAAATAAATTTA
128431640 AA
1 AA
128431642 AAATCATGAT
Statistics
Matches: 48, Mismatches: 16, Indels: 6
0.69 0.23 0.09
Matches are distributed among these distances:
15 1 0.02
16 35 0.73
17 8 0.17
18 4 0.08
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (16 bp):
AATTAAAATAAATTTA
Found at i:128438629 original size:19 final size:20
Alignment explanation
Indices: 128438607--128438656 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
128438597 CGTTACAATG
*
128438607 TTTTATAAATAAAGT-ATTT
1 TTTTATAAATAAAATAATTT
*
128438626 TTTTATAAAAAAAATAATTT
1 TTTTATAAATAAAATAATTT
128438646 TTATTA-AAATA
1 TT-TTATAAATA
128438657 TTTATTAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 13 0.50
20 10 0.38
21 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TTTTATAAATAAAATAATTT
Found at i:128441692 original size:14 final size:15
Alignment explanation
Indices: 128441673--128441701 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
128441663 ATTTTTTATA
128441673 TAAATTT-TATTTTT
1 TAAATTTATATTTTT
128441687 TAAATTTATATTTTT
1 TAAATTTATATTTTT
128441702 ATTCAAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TAAATTTATATTTTT
Found at i:128442654 original size:10 final size:10
Alignment explanation
Indices: 128442604--128442664 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
128442594 TAGTAGCAAT
128442604 ATAATAATAAA
1 ATAATAA-AAA
128442615 ATAATAAAACA
1 ATAATAAAA-A
* *
128442626 GTGATAAAAA
1 ATAATAAAAA
* *
128442636 ATGAGAAAAA
1 ATAATAAAAA
*
128442646 ATAATAAAAT
1 ATAATAAAAA
128442656 ATAA-AAAAA
1 ATAATAAAAA
128442665 CAGCAAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
9 4 0.10
10 22 0.54
11 15 0.37
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.20
Consensus pattern (10 bp):
ATAATAAAAA
Found at i:128445393 original size:25 final size:25
Alignment explanation
Indices: 128445364--128445415 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
128445354 CTCTGTCATT
128445364 AAAATTGATAGAAATATTCAATAAA
1 AAAATTGATAGAAATATTCAATAAA
128445389 AAAATTGATAGAAATATTCAATAAA
1 AAAATTGATAGAAATATTCAATAAA
128445414 AA
1 AA
128445416 GTTGGCAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.27
Consensus pattern (25 bp):
AAAATTGATAGAAATATTCAATAAA
Found at i:128445540 original size:2 final size:2
Alignment explanation
Indices: 128445533--128445560 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
128445523 TTTATTTGTA
128445533 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128445561 TATTTGTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128449288 original size:23 final size:23
Alignment explanation
Indices: 128449258--128449301 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
128449248 TTAATCTATG
128449258 TATATTTAGTTTTAAAAATTTCA
1 TATATTTAGTTTTAAAAATTTCA
* *
128449281 TATATTTATTTTTTAAAATTT
1 TATATTTAGTTTTAAAAATTT
128449302 AAAATTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (23 bp):
TATATTTAGTTTTAAAAATTTCA
Found at i:128459621 original size:5 final size:6
Alignment explanation
Indices: 128459604--128459629 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
128459594 TCTTTTTCTC
128459604 TCTTTT TCTTTT TCTTTT TCTTTT TC
1 TCTTTT TCTTTT TCTTTT TCTTTT TC
128459630 CCTTTCTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TCTTTT
Found at i:128459635 original size:18 final size:18
Alignment explanation
Indices: 128459604--128459638 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
128459594 TCTTTTTCTC
**
128459604 TCTTTTTCTTTTTCTTTT
1 TCTTTTTCCCTTTCTTTT
128459622 TCTTTTTCCCTTTCTTT
1 TCTTTTTCCCTTTCTTT
128459639 CTTTACCTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (18 bp):
TCTTTTTCCCTTTCTTTT
Found at i:128459648 original size:28 final size:28
Alignment explanation
Indices: 128459593--128459649 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
128459583 AGATTTTCCA
* **
128459593 TTCTTTTTCTCTCTTTTTCTTTTTCTTT
1 TTCTTTTTCCCTCTTTTTCTTTACCTTT
128459621 TTCTTTTTCCCT-TTCTTTCTTTACCTTT
1 TTCTTTTTCCCTCTT-TTTCTTTACCTTT
128459649 T
1 T
128459650 ATTTTTGCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.74
Consensus pattern (28 bp):
TTCTTTTTCCCTCTTTTTCTTTACCTTT
Found at i:128461078 original size:21 final size:20
Alignment explanation
Indices: 128461036--128461090 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
128461026 ATTTTGAGAC
* *
128461036 AATTTAATAAAAAAATTGAA
1 AATTTAATAAAAAAACTAAA
*
128461056 AATTTAAGAAAAAGAACTAAA
1 AATTTAATAAAAA-AACTAAA
*
128461077 AATTAAATAAAAAA
1 AATTTAATAAAAAA
128461091 TTTTAATAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (20 bp):
AATTTAATAAAAAAACTAAA
Found at i:128461776 original size:4 final size:4
Alignment explanation
Indices: 128461767--128461793 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
128461757 TATTAAATAT
128461767 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
128461794 CTTGAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:128461897 original size:3 final size:3
Alignment explanation
Indices: 128461889--128461945 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
128461879 GTTTTAACAG
128461889 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
128461937 ATA ATA ATA
1 ATA ATA ATA
128461946 CCAATGTTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:128463624 original size:25 final size:25
Alignment explanation
Indices: 128463582--128463634 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
128463572 GTAAAAATTT
*
128463582 ATTAATAAAATATTTTTATAATTAA
1 ATTAATAAAATATATTTATAATTAA
* *
128463607 ATTAA-AAAATTATATTTATTATTTA
1 ATTAATAAAA-TATATTTATAATTAA
128463632 ATT
1 ATT
128463635 TAAATTGGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTAATAAAATATATTTATAATTAA
Found at i:128468518 original size:22 final size:23
Alignment explanation
Indices: 128468493--128468536 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
128468483 AAAGGAATTT
* *
128468493 GAAAAAACAAA-TGATATTTTTA
1 GAAAAAAAAAAGTGATAGTTTTA
128468515 GAAAAAAAAAAGTGATAGTTTT
1 GAAAAAAAAAAGTGATAGTTTT
128468537 GTTTTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.55, C:0.02, G:0.14, T:0.30
Consensus pattern (23 bp):
GAAAAAAAAAAGTGATAGTTTTA
Found at i:128472426 original size:43 final size:43
Alignment explanation
Indices: 128472365--128472448 Score: 168
Period size: 43 Copynumber: 2.0 Consensus size: 43
128472355 AACCTTACAA
128472365 CAACGCATTGAAGTAGGGAAAACTGACATTTTTACATCAATAG
1 CAACGCATTGAAGTAGGGAAAACTGACATTTTTACATCAATAG
128472408 CAACGCATTGAAGTAGGGAAAACTGACATTTTTACATCAAT
1 CAACGCATTGAAGTAGGGAAAACTGACATTTTTACATCAAT
128472449 GGAAACATCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (43 bp):
CAACGCATTGAAGTAGGGAAAACTGACATTTTTACATCAATAG
Found at i:128475204 original size:51 final size:51
Alignment explanation
Indices: 128475128--128475235 Score: 216
Period size: 51 Copynumber: 2.1 Consensus size: 51
128475118 CCTTCAACTT
128475128 GAGTTAGGTTAATTCAAATTTTAAATTTTTGGACATTTTCTATTTAGATTC
1 GAGTTAGGTTAATTCAAATTTTAAATTTTTGGACATTTTCTATTTAGATTC
128475179 GAGTTAGGTTAATTCAAATTTTAAATTTTTGGACATTTTCTATTTAGATTC
1 GAGTTAGGTTAATTCAAATTTTAAATTTTTGGACATTTTCTATTTAGATTC
128475230 GAGTTA
1 GAGTTA
128475236 TTTTAAGTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (51 bp):
GAGTTAGGTTAATTCAAATTTTAAATTTTTGGACATTTTCTATTTAGATTC
Found at i:128478871 original size:24 final size:23
Alignment explanation
Indices: 128478844--128478892 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
128478834 TTTGAGTGAG
128478844 TTAAAAG-TAAAATTTTATAATTTT
1 TTAAAAGATAAAA--TTATAATTTT
* *
128478868 TTAAGAGATGAAATTATAATTTT
1 TTAAAAGATAAAATTATAATTTT
128478891 TT
1 TT
128478893 TTATTTTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 12 0.55
24 6 0.27
25 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (23 bp):
TTAAAAGATAAAATTATAATTTT
Found at i:128485028 original size:103 final size:101
Alignment explanation
Indices: 128484574--128485028 Score: 327
Period size: 103 Copynumber: 4.4 Consensus size: 101
128484564 CACAATACGT
* * * * **
128484574 TTGACTAAAGCTATATATAAAACAAAAGGAAGAGAAAGAAAG-AGAAGAGGTTATCATCGTTATC
1 TTGACTAAGGCTATATGTAAAGCAAAA--AAGA-AAAGAAAGAAGAAGAGGGTATCATCAATATC
* * *
128484638 AATATTTTAATATCTGTTAAATCCAT--AATTACGATAC-C
63 AATATTCTAATATTTGTTAAAT--ATGCAATCACGATACTC
* * * * * * *
128484676 TTTAACTAAGACTATATGTAAAATCAAAGACAGAGAA-AAAGAAGAA-AAGGTCT-ATCAATATC
1 -TTGACTAAGGCTATATGT-AAAGCAAA-AAAGAAAAGAAAGAAGAAGAGGGTATCATCAATATC
* *** *
128484738 GATATTCTAATATTTGTTAAATCCACAATCACGACA-TCC
63 AATATTCTAATATTTGTTAAATATGCAATCACGATACT-C
* * * * * * * * *
128484777 TTAATTAAGGTTATATGTAAAGTAAAAAGGGAAAGAAAGGAAAAAGAGGGGATACCATCAATATT
1 TTGACTAAGGCTATATGTAAAGCAAAAAAGAAAAGAAA-GAAGAAGA-GGG-TATCATCAATATC
* * * * * * *
128484842 AATATCCTAATATATGTTAAATCTGCTATTATGATACAC
63 AATATTCTAATATTTGTTAAATATGCAATCACGATACTC
128484881 TTGACTAAGGCTATATGTAAAGCAAAAGATAGATAAA-AAA-AAGAAGAGGAGTATCATCAATAT
1 TTGACTAAGGCTATATGTAAAGCAAAA-A-AGA-AAAGAAAGAAGAAGAGG-GTATCATCAATAT
** *
128484944 TGATATTTTAATATTTGTTAAATATGCAATCACGATACTC
62 CAATATTCTAATATTTGTTAAATATGCAATCACGATACTC
128484984 TTGACTAAGGCTATATGTAAAGCAAGAAAAGAAAAGAAAGAAGAA
1 TTGACTAAGGCTATATGTAAAGCAA-AAAAGAAAAGAAAGAAGAA
128485029 ATGGTACTAT
Statistics
Matches: 271, Mismatches: 60, Indels: 42
0.73 0.16 0.11
Matches are distributed among these distances:
98 4 0.01
99 9 0.03
100 54 0.20
101 13 0.05
102 14 0.05
103 93 0.34
104 75 0.28
105 2 0.01
106 4 0.01
107 3 0.01
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (101 bp):
TTGACTAAGGCTATATGTAAAGCAAAAAAGAAAAGAAAGAAGAAGAGGGTATCATCAATATCAAT
ATTCTAATATTTGTTAAATATGCAATCACGATACTC
Found at i:128489068 original size:47 final size:47
Alignment explanation
Indices: 128488959--128489069 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
128488949 CCGGGATAAG
*
128488959 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
128489006 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
128489053 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
128489070 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:128494882 original size:47 final size:47
Alignment explanation
Indices: 128494773--128494883 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
128494763 CCGGGATAAG
*
128494773 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
128494820 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
128494867 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
128494884 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:128501470 original size:26 final size:26
Alignment explanation
Indices: 128501391--128501477 Score: 83
Period size: 26 Copynumber: 3.3 Consensus size: 26
128501381 AAGTTTTAGC
* *
128501391 ATTTATTTAT-AATTAATTATTATCT
1 ATTTATTTATAAATTAATTATTTTTT
*
128501416 AATTATGTT-TAAA-TAATT-TTTTTAGT
1 ATTTAT-TTATAAATTAATTATTTTT--T
128501442 ATTTATTTATAAATTAATTATTTTTT
1 ATTTATTTATAAATTAATTATTTTTT
128501468 ATTTTATTTA
1 A-TTTATTTA
128501478 ATAATGACGT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
24 3 0.06
25 13 0.26
26 16 0.32
27 13 0.26
28 5 0.10
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.62
Consensus pattern (26 bp):
ATTTATTTATAAATTAATTATTTTTT
Found at i:128501478 original size:51 final size:50
Alignment explanation
Indices: 128501384--128501482 Score: 128
Period size: 51 Copynumber: 2.0 Consensus size: 50
128501374 AAGTTTAAAG
*
128501384 TTTTAGCATTTATTTATAATTAATTATTATCTAATTATGTTTAAATAATTT
1 TTTTAGCATTTATTTATAATTAATTATTATCTAATTATATTT-AATAATTT
* * * *
128501435 TTTTAGTATTTATTTATAAATTAATTATT-TTTTATTTTATTTAATAAT
1 TTTTAGCATTTATTTAT-AATTAATTATTATCTAATTATATTTAATAAT
128501483 GACGTGTCAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
50 6 0.14
51 25 0.60
52 11 0.26
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (50 bp):
TTTTAGCATTTATTTATAATTAATTATTATCTAATTATATTTAATAATTT
Found at i:128503644 original size:23 final size:22
Alignment explanation
Indices: 128503618--128503669 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
128503608 TTAAATAATA
*
128503618 AAATA-AATATTAAAATCAAACTC
1 AAATACAAT-TTAAAA-AAAACTC
128503641 AAATATCAATTTAAAAAAAACTC
1 AAATA-CAATTTAAAAAAAACTC
128503664 AAATAC
1 AAATAC
128503670 TAAATTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 1 0.04
23 16 0.62
24 6 0.23
25 3 0.12
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.25
Consensus pattern (22 bp):
AAATACAATTTAAAAAAAACTC
Found at i:128507876 original size:31 final size:31
Alignment explanation
Indices: 128507811--128507876 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
128507801 CAGTCTAGCT
* * *
128507811 ACTTAAATAAAAACTTTTAAATAGTTTAACG
1 ACTTAAATAAAAAATTTTAAATAATTCAACG
* * *
128507842 ACTTGAATAAAAAATTTTGAATAATTCAATG
1 ACTTAAATAAAAAATTTTAAATAATTCAACG
128507873 ACTT
1 ACTT
128507877 TTTTAACTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.36
Consensus pattern (31 bp):
ACTTAAATAAAAAATTTTAAATAATTCAACG
Found at i:128512895 original size:6 final size:6
Alignment explanation
Indices: 128512884--128512922 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
128512874 CCAATCTCCG
* * *
128512884 CCGCCT CCGCCT CCGCCT CCGCTT CCGCTT CCGCTT CCG
1 CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCG
128512923 TGTCAGTACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.59, G:0.18, T:0.23
Consensus pattern (6 bp):
CCGCCT
Found at i:128512899 original size:12 final size:12
Alignment explanation
Indices: 128512884--128512922 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
128512874 CCAATCTCCG
*
128512884 CCGCCTCCGCCT
1 CCGCCTCCGCTT
128512896 CCGCCTCCGCTT
1 CCGCCTCCGCTT
*
128512908 CCGCTTCCGCTT
1 CCGCCTCCGCTT
128512920 CCG
1 CCG
128512923 TGTCAGTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.00, C:0.59, G:0.18, T:0.23
Consensus pattern (12 bp):
CCGCCTCCGCTT
Found at i:128518520 original size:34 final size:34
Alignment explanation
Indices: 128518477--128518545 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
128518467 GAGAAAGGGT
128518477 TTTAAATTCATATATCAAATCAATTGTATACAGA
1 TTTAAATTCATATATCAAATCAATTGTATACAGA
128518511 TTTAAATTCATATATCAAATCAATTGTATACAGA
1 TTTAAATTCATATATCAAATCAATTGTATACAGA
128518545 T
1 T
128518546 CTCATTTCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (34 bp):
TTTAAATTCATATATCAAATCAATTGTATACAGA
Found at i:128518535 original size:17 final size:17
Alignment explanation
Indices: 128518481--128518535 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
128518471 AAGGGTTTTA
128518481 AATTCATATATCAAATC
1 AATTCATATATCAAATC
* * *
128518498 AATT-GTATA-CAGATTTA
1 AATTCATATATCA-A-ATC
128518515 AATTCATATATCAAATC
1 AATTCATATATCAAATC
128518532 AATT
1 AATT
128518536 GTATACAGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
15 2 0.07
16 5 0.18
17 14 0.50
18 5 0.18
19 2 0.07
ACGTcount: A:0.45, C:0.13, G:0.04, T:0.38
Consensus pattern (17 bp):
AATTCATATATCAAATC
Found at i:128526705 original size:17 final size:17
Alignment explanation
Indices: 128526679--128526715 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
128526669 AGTTTTATTA
* *
128526679 ATATTTTTTTAGTTTTT
1 ATATTATTTTAATTTTT
128526696 ATATTATTTTAATTTTT
1 ATATTATTTTAATTTTT
128526713 ATA
1 ATA
128526716 AACTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
ATATTATTTTAATTTTT
Found at i:128527888 original size:7 final size:7
Alignment explanation
Indices: 128527876--128527908 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
128527866 CCACTTGATT
128527876 TTTTTTA
1 TTTTTTA
128527883 TTTTTTTA
1 -TTTTTTA
128527891 TTTTTTA
1 TTTTTTA
128527898 -TTTTTA
1 TTTTTTA
128527904 TTTTT
1 TTTTT
128527909 GAGGTTGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:128528331 original size:23 final size:21
Alignment explanation
Indices: 128528299--128528346 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
128528289 ATACAACATG
*
128528299 ATATGAAAT-AATA-ATACAA
1 ATATAAAATGAATATATACAA
*
128528318 ATATAAAATGAATATATATAA
1 ATATAAAATGAATATATACAA
128528339 ATATAAAA
1 ATATAAAA
128528347 ATTATAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.32
20 4 0.16
21 13 0.52
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (21 bp):
ATATAAAATGAATATATACAA
Found at i:128532903 original size:77 final size:78
Alignment explanation
Indices: 128532817--128532975 Score: 311
Period size: 77 Copynumber: 2.1 Consensus size: 78
128532807 ATTTTATAAA
128532817 TTTTAATAGATCAAAATATAATATTATCATGTACTAACATAAAATTCTATTATTTTTAAAGGGAC
1 TTTTAATAGATCAAAATATAATATTATCATGTACTAACATAAAATTCTATTATTTTTAAAGGGAC
128532882 TAAATAGAAAT-T
66 TAAATAGAAATAT
128532894 TTTTAATAGATCAAAATATAATATTATCATGTACTAACATAAAATTCTATTATTTTTAAAGGGAC
1 TTTTAATAGATCAAAATATAATATTATCATGTACTAACATAAAATTCTATTATTTTTAAAGGGAC
128532959 TAAATAGAAATAT
66 TAAATAGAAATAT
128532972 TTTT
1 TTTT
128532976 CTTCATATTT
Statistics
Matches: 81, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
77 76 0.94
78 5 0.06
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.40
Consensus pattern (78 bp):
TTTTAATAGATCAAAATATAATATTATCATGTACTAACATAAAATTCTATTATTTTTAAAGGGAC
TAAATAGAAATAT
Found at i:128534874 original size:29 final size:30
Alignment explanation
Indices: 128534842--128534903 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
128534832 ACTTAACAAG
128534842 CAAATG-CTTCTAAAATAATAA-AAAAATAA
1 CAAATGCCTT-TAAAATAATAAGAAAAATAA
*
128534871 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAGAAAAATAA
128534901 CAA
1 CAA
128534904 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.60, C:0.11, G:0.05, T:0.24
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAGAAAAATAA
Found at i:128541886 original size:142 final size:141
Alignment explanation
Indices: 128541545--128541866 Score: 389
Period size: 140 Copynumber: 2.3 Consensus size: 141
128541535 CGGGCAGTGA
* * *
128541545 ACTTGACCTGTTAAATGTTACCACTTTGAACCAACTTAGCTAAGTTCCAGTTTCGCTGCTACCTA
1 ACTTGACCTGTTAAATGTCACCACTTTGAACCAACTTAGCTAAGTTCCAGGTTCGCTGCTACCCA
* * * * *
128541610 TATATAGATATGGATATCATAGACATGATATTACCTGTGCATCATCACTACTGCCCTTATTGTTT
66 TATATAGATATCGATATCATACACATGATATTACCTGTCCATCATCACCACTGCACTTATTGTTT
* **
128541675 TCGGGCTCTGG
131 TCCGGCTCCAG
* * * *
128541686 AC-TCACCTGTTAAATGTCACCTCTTTGAACCAACTTAGCTAAGTTCCACGTTCGCTGCTTCCCA
1 ACTTGACCTGTTAAATGTCACCACTTTGAACCAACTTAGCTAAGTTCCAGGTTCGCTGCTACCCA
* * * *
128541750 TATATAGATGA-CGATATCTTACACATGACTCTTATCTGTCCATCATCACCACTG-ATTGTATTG
66 TATATAGAT-ATCGATATCATACACATGA-TATTACCTGTCCATCATCACCACTGCACT-TATTG
128541813 TTTTCCGGCTCCAG
128 TTTTCCGGCTCCAG
* * * *
128541827 ACTTGACCTGTTACACGCCACCACTTTTAACCAACTTAGC
1 ACTTGACCTGTTAAATGTCACCACTTTGAACCAACTTAGC
128541867 AATGTTCTGG
Statistics
Matches: 152, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
140 79 0.52
141 42 0.28
142 31 0.20
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (141 bp):
ACTTGACCTGTTAAATGTCACCACTTTGAACCAACTTAGCTAAGTTCCAGGTTCGCTGCTACCCA
TATATAGATATCGATATCATACACATGATATTACCTGTCCATCATCACCACTGCACTTATTGTTT
TCCGGCTCCAG
Found at i:128544401 original size:117 final size:114
Alignment explanation
Indices: 128544278--128544503 Score: 337
Period size: 117 Copynumber: 2.0 Consensus size: 114
128544268 AAAAAAAAAT
* *
128544278 AAAATAAACCAATCTAAATTGAATTATCATAAATAATTCAAAAAAATCCAATCT-AAGTAACCAA
1 AAAATAAACCAATCTAAATCGAATTATCATAAATAATTC-AAAAAATCCAAT-TGAACTAACCAA
* *
128544342 ATTTAACCCAAACATATATATTAATATTGGTGAACATTCATTATTTAAAATAA
64 ATTTAACCCAAAC--ATATATTAATATCGGTGAACAGTCATTATTTAAAATAA
* *
128544395 AAAATAAACCAATCTAAATCGAATTGTCATAAATAATTCAAAAAATCCAATTGAACTAACCAAGT
1 AAAATAAACCAATCTAAATCGAATTATCATAAATAATTCAAAAAATCCAATTGAACTAACCAAAT
* *
128544460 TTATCCCAAACGTATATTAATATCGGTGAACAGTCATTATTTAA
66 TTAACCCAAACATATATTAATATCGGTGAACAGTCATTATTTAA
128544504 GATATGGAAA
Statistics
Matches: 100, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
114 30 0.30
115 1 0.01
116 32 0.32
117 37 0.37
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.30
Consensus pattern (114 bp):
AAAATAAACCAATCTAAATCGAATTATCATAAATAATTCAAAAAATCCAATTGAACTAACCAAAT
TTAACCCAAACATATATTAATATCGGTGAACAGTCATTATTTAAAATAA
Found at i:128550962 original size:6 final size:6
Alignment explanation
Indices: 128550938--128550976 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
128550928 CGTTATTATT
* *
128550938 AATTTA AATGTTA AATTTT AATTTT AATTTA AATTTA AA
1 AATTTA AAT-TTA AATTTA AATTTA AATTTA AATTTA AA
128550977 ATAAAATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (6 bp):
AATTTA
Found at i:128550988 original size:25 final size:25
Alignment explanation
Indices: 128550936--128550989 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
128550926 GACGTTATTA
* **
128550936 TTAATTTAAATGTTAAATTTTAATT
1 TTAATTTAAATGTTAAAATAAAATT
128550961 TTAATTTAAAT-TTAAAATAAAATAT
1 TTAATTTAAATGTTAAAATAAAAT-T
128550986 TTAA
1 TTAA
128550990 AATTTATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
TTAATTTAAATGTTAAAATAAAATT
Found at i:128552478 original size:33 final size:33
Alignment explanation
Indices: 128552410--128552479 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
128552400 ACAAAAAATT
* *
128552410 AAAAAAATTTTAATTGGAACCCCAACTTTTAAA
1 AAAAAAATTCTAATTGGAACCCCAAATTTTAAA
* * *
128552443 AAAAAAATTCTCATT-GAACTCCTAAATTTTTAA
1 AAAAAAATTCTAATTGGAAC-CCCAAATTTTAAA
128552476 AAAA
1 AAAA
128552480 TTTACTAGGC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 4 0.13
33 27 0.87
ACGTcount: A:0.50, C:0.14, G:0.04, T:0.31
Consensus pattern (33 bp):
AAAAAAATTCTAATTGGAACCCCAAATTTTAAA
Found at i:128557150 original size:39 final size:35
Alignment explanation
Indices: 128557070--128557137 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
128557060 GTCAAGGATA
**
128557070 AAATAAATAGTGTAAGATAATTGGACTTTTTTGAC
1 AAATAAATAGTGTAAGATAATTGGACTTAATTGAC
*
128557105 AAATAAATAGTGTAATATAATTGGACTTAATTG
1 AAATAAATAGTGTAAGATAATTGGACTTAATTG
128557138 CAACCCAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.43, C:0.04, G:0.16, T:0.37
Consensus pattern (35 bp):
AAATAAATAGTGTAAGATAATTGGACTTAATTGAC
Found at i:128558603 original size:3 final size:3
Alignment explanation
Indices: 128558595--128558621 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
128558585 TTAGAATTAA
128558595 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
128558622 TTTTTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:128561719 original size:15 final size:15
Alignment explanation
Indices: 128561701--128561754 Score: 54
Period size: 17 Copynumber: 3.3 Consensus size: 15
128561691 TTTTATGATT
128561701 TTTATATTTTTAAAA
1 TTTATATTTTTAAAA
*
128561716 TTTATATTATTTAGATA
1 TTTATATT-TTTA-AAA
*
128561733 TTAATAATTTTTAAATA
1 TTTAT-ATTTTTAAA-A
128561750 TTTAT
1 TTTAT
128561755 TGACGTGACA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 8 0.26
16 5 0.16
17 15 0.48
18 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (15 bp):
TTTATATTTTTAAAA
Found at i:128565484 original size:23 final size:22
Alignment explanation
Indices: 128565458--128565505 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
128565448 TTTAACAGTC
128565458 TAATAACTTAAATTATAATTTTT
1 TAATAA-TTAAATTATAATTTTT
* * *
128565481 TAATAATTTAATTTTTATTTTT
1 TAATAATTAAATTATAATTTTT
128565503 TAA
1 TAA
128565506 ATTTTTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TAATAATTAAATTATAATTTTT
Done.