Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 425 of 425
Found at i:129270710 original size:26 final size:24
Alignment explanation
Indices: 129270666--129270715 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
129270656 ATTTGTTTTA
*
129270666 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
129270690 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
129270716 TTTTTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:129273270 original size:35 final size:35
Alignment explanation
Indices: 129273226--129273392 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
129273216 TCCTCATTGA
** *
129273226 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
129273261 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
129273301 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
129273336 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
129273371 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
129273393 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:129273309 original size:75 final size:73
Alignment explanation
Indices: 129273221--129273392 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
129273211 GGTTTTCCTC
** * * **
129273221 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
129273285 TCAGTATGG
65 TCAGTATGG
*
129273294 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
129273359 CTCAGTATGG
64 CTCAGTATGG
129273369 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
129273393 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:129280763 original size:35 final size:35
Alignment explanation
Indices: 129280719--129280885 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
129280709 TCCTCATTGA
** *
129280719 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
129280754 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
129280794 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
129280829 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
129280864 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
129280886 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:129280802 original size:75 final size:73
Alignment explanation
Indices: 129280714--129280885 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
129280704 GGTTTTCCTC
** * * **
129280714 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
129280778 TCAGTATGG
65 TCAGTATGG
*
129280787 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
129280852 CTCAGTATGG
64 CTCAGTATGG
129280862 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
129280886 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:129283690 original size:92 final size:93
Alignment explanation
Indices: 129283492--129283690 Score: 201
Period size: 92 Copynumber: 2.2 Consensus size: 93
129283482 GGGTGCCTTG
* * * * *
129283492 GTGTCTTTCAACCATGGTCTTATTTATTATTGACTTGATGCTATAGTGTCTTTTAACCATGGTCT
1 GTGTCTTTCAACTATGGCCTTATTTATTATTGACTTGATGCCATAGTGTCTTTCAACCATAGTCT
* *
129283557 TATTCATTTTCTGTCATGTTGCCATTAC
66 TATTCATTTTCCGTCATGTTCCCATTAC
* * * * * *
129283585 ATAT-TTT-ACCTATGGCCTTATTTATTTTTTGTCTTG-TCGCCATTGTGTCTTTCAACCATAGT
1 GTGTCTTTCAACTATGGCCTTATTTA-TTATTGACTTGAT-GCCATAGTGTCTTTCAACCATAGT
* * *
129283647 TTTATTTATTTTCCGTCGTGTTCCCA-TA-
64 CTTATTCATTTTCCGTCATGTTCCCATTAC
129283675 GTGTCTTTCAACTATG
1 GTGTCTTTCAACTATG
129283691 TTCATATTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
90 2 0.02
91 20 0.24
92 59 0.71
93 2 0.02
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (93 bp):
GTGTCTTTCAACTATGGCCTTATTTATTATTGACTTGATGCCATAGTGTCTTTCAACCATAGTCT
TATTCATTTTCCGTCATGTTCCCATTAC
Found at i:129287027 original size:5 final size:5
Alignment explanation
Indices: 129287013--129287063 Score: 66
Period size: 5 Copynumber: 9.6 Consensus size: 5
129287003 AAATAGAAAG
*
129287013 ATTTT ATTTT GTTTT ATTTT ATTATTT ATTTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT A-T-TTT A-TTTT ATTTT ATTTT ATTTT
129287061 ATT
1 ATT
129287064 AATTTAGGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
5 31 0.74
6 5 0.12
7 6 0.14
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:129287045 original size:23 final size:22
Alignment explanation
Indices: 129287015--129287058 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
129287005 ATAGAAAGAT
*
129287015 TTTATTTTGTTTTATTTTATTA
1 TTTATTTTATTTTATTTTATTA
129287037 TTTATTTTTATTTTATTTTATT
1 TTTA-TTTTATTTTATTTTATT
129287059 TTATTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTATTTTATTTTATTTTATTA
Found at i:129287055 original size:28 final size:29
Alignment explanation
Indices: 129287014--129287069 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
129287004 AATAGAAAGA
*
129287014 TTTTATTTTGTTTTATTTTATT-ATTTAT
1 TTTTATTTTATTTTATTTTATTAATTTAT
129287042 TTTTATTTTATTTTATTTTATTAATTTA
1 TTTTATTTTATTTTATTTTATTAATTTA
129287070 GGTTAGGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (29 bp):
TTTTATTTTATTTTATTTTATTAATTTAT
Found at i:129290596 original size:21 final size:21
Alignment explanation
Indices: 129290570--129290655 Score: 100
Period size: 21 Copynumber: 4.1 Consensus size: 21
129290560 GGCTTTATCG
* *
129290570 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
129290591 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
129290612 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
* * * *
129290633 TTTAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
129290654 AT
1 AT
129290656 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (21 bp):
ATCAGGCACCTCATGTGTCGT
Found at i:129297872 original size:4 final size:4
Alignment explanation
Indices: 129297863--129297897 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
129297853 GAGCAAACGT
129297863 GAAA GAAA G-AA GAAA GAAA GAAA GAAA GAAA -AAA G
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA G
129297898 GGAAATTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 6 0.21
4 23 0.79
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:129304087 original size:19 final size:19
Alignment explanation
Indices: 129304063--129304102 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
129304053 TGTAACCTTA
129304063 TTTCGATGTCGGATATGGG
1 TTTCGATGTCGGATATGGG
129304082 TTTCGATGTCGGATATGGG
1 TTTCGATGTCGGATATGGG
129304101 TT
1 TT
129304103 AGGGGTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.35, T:0.40
Consensus pattern (19 bp):
TTTCGATGTCGGATATGGG
Found at i:129305286 original size:30 final size:30
Alignment explanation
Indices: 129305252--129305317 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
129305242 TACTCATAAT
*
129305252 AATCTCAAAAGCAATCAAAAGACAATCTTC
1 AATCTCAAAAGAAATCAAAAGACAATCTTC
* *
129305282 AATCTCCAAAGAAATCAAAAGAGAATCTTC
1 AATCTCAAAAGAAATCAAAAGACAATCTTC
129305312 AATCTC
1 AATCTC
129305318 GATGGGAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.48, C:0.23, G:0.08, T:0.21
Consensus pattern (30 bp):
AATCTCAAAAGAAATCAAAAGACAATCTTC
Found at i:129308444 original size:50 final size:51
Alignment explanation
Indices: 129308367--129308495 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
129308357 GACCATGGCA
* *
129308367 ACAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
129308418 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* ** *
129308468 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTAATAGCTTCGGCTAC
129308496 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 48 0.68
51 23 0.32
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:129308509 original size:31 final size:31
Alignment explanation
Indices: 129308471--129308619 Score: 199
Period size: 31 Copynumber: 4.8 Consensus size: 31
129308461 ACAAATGACA
*
129308471 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
129308502 AGTGAAAAGTGGTAGCTTCTGCTATCTGGTC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
129308533 AATGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
129308564 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
129308595 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
129308620 AAGTGACAAG
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:129308723 original size:47 final size:46
Alignment explanation
Indices: 129308637--129308759 Score: 138
Period size: 47 Copynumber: 2.7 Consensus size: 46
129308627 AAGTGATTTC
* * * * * *
129308637 CGTATGAGACCATATTTGGGATATGACATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* *
129308683 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * *
129308730 CGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
129308760 GATATGTGAT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 27 0.42
47 38 0.58
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:129308793 original size:49 final size:48
Alignment explanation
Indices: 129308688--129308813 Score: 166
Period size: 49 Copynumber: 2.6 Consensus size: 48
129308678 TGCTACTGTA
* * *
129308688 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTCGTG
*
129308734 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATT-CGTG
* * *
129308783 TAAGATCATAGTTGGGCTATGACATCGATAT
1 TAAGACCATAGCTGGGCTATGGCATCGATAT
129308814 ATGAAGATGT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
46 24 0.34
47 1 0.01
48 13 0.19
49 32 0.46
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTCGTG
Found at i:129310961 original size:22 final size:21
Alignment explanation
Indices: 129310936--129310976 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
129310926 TTATCCATTC
*
129310936 TAAATTGTTTTATTATGTATTT
1 TAAATTATTTT-TTATGTATTT
*
129310958 TAAATTATTTTTTTTGTAT
1 TAAATTATTTTTTATGTAT
129310977 ATTATTACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (21 bp):
TAAATTATTTTTTATGTATTT
Found at i:129315240 original size:19 final size:20
Alignment explanation
Indices: 129315213--129315255 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
129315203 TCTTTTTGCA
* *
129315213 TTCATTCATTTGCATTACAT
1 TTCATTCATATGCATTAAAT
129315233 TTCA-TCATATGCATTAAAT
1 TTCATTCATATGCATTAAAT
129315252 TTCA
1 TTCA
129315256 CGAAAAGACC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.30, C:0.19, G:0.05, T:0.47
Consensus pattern (20 bp):
TTCATTCATATGCATTAAAT
Found at i:129321924 original size:75 final size:74
Alignment explanation
Indices: 129321803--129321974 Score: 216
Period size: 75 Copynumber: 2.4 Consensus size: 74
129321793 TCCATGGCAA
** *
129321803 AGTGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTA
1 AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-
*
129321863 T-CCATACTG
65 TCCCATACCG
129321872 AGCTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
1 AG-TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT
129321937 TCCCATACCG
65 TCCCATACCG
*
129321947 AGT-TAAAAATGTAGGTATGGTATT-TCAA
1 AGTGT-GAAATGTAGGTATGGTATTATCAA
129321975 TGAGGAAAAC
Statistics
Matches: 90, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
69 2 0.02
70 18 0.20
73 9 0.10
74 20 0.22
75 41 0.46
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (74 bp):
AGTGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTT
CCCATACCG
Found at i:129321943 original size:35 final size:35
Alignment explanation
Indices: 129321808--129321972 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
129321798 GGCAAAGTGT
* **
129321808 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
129321843 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
129321878 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
129321918 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
129321953 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
129321973 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 8, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
34 19 0.16
35 66 0.57
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:129329411 original size:75 final size:75
Alignment explanation
Indices: 129329292--129329463 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
129329282 CATGGCAAAG
** *
129329292 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
129329351 CCATACTGAGC
65 CCATACCGAGC
129329362 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
129329427 CATACCGAGT
66 CATACCGAGC
***
129329437 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
129329464 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:129329430 original size:35 final size:35
Alignment explanation
Indices: 129329295--129329461 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
129329285 GGCAAAGTGT
* **
129329295 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
129329330 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
129329365 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
129329405 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
129329441 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
129329462 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:129329453 original size:36 final size:35
Alignment explanation
Indices: 129329391--129329461 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
129329381 ATTATCAAAT
* *
129329391 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
129329426 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
129329462 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:129333495 original size:45 final size:45
Alignment explanation
Indices: 129333444--129333653 Score: 135
Period size: 45 Copynumber: 4.7 Consensus size: 45
129333434 GAATTTGCAG
* *
129333444 ATCTTGTCTCCCTGAAGTTGTAGTAGAACAGATCGAAGATGACAA
1 ATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGATGACAA
* * * ** ** *
129333489 ATCTTGTCTTCTTGAAGTTGCAGT-GAAACAGATTTAAG-CCAC-C
1 ATCTTGTCTCCCTGAAGTTGCAGTAG-AGCAGATCGAAGATGACAA
* * * * * * * * *
129333532 ACCTTATCTCCCT-AAGTTGTAGTGGAGCAG-GCTAAATATTG-TAG
1 ATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATC-GAAGA-TGACAA
* * *
129333576 ATCTTGTCTCCCTGAGGTTGCAGTAGAGCATATCGAAGATAACAA
1 ATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGATGACAA
* *
129333621 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 ATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGAT
129333654 TATGGCTAAA
Statistics
Matches: 118, Mismatches: 38, Indels: 18
0.68 0.22 0.10
Matches are distributed among these distances:
42 15 0.13
43 10 0.08
44 15 0.13
45 77 0.65
46 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (45 bp):
ATCTTGTCTCCCTGAAGTTGCAGTAGAGCAGATCGAAGATGACAA
Found at i:129334047 original size:227 final size:224
Alignment explanation
Indices: 129333611--129334039 Score: 551
Period size: 227 Copynumber: 1.9 Consensus size: 224
129333601 GAGCATATCG
*** *
129333611 AAGATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTATGGCTAAATCCTATACCTCT
1 AAGATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAACTAAATCATATACCTCT
* * *
129333676 GAAGATGCAGTGGGTCGGATCAAATCTATCATGGCAAATCTTATCTCTCTGAAATTGCAGTAGAG
66 GAAGATGCAGTAGGTCGGATCAAATCTACCATGGCAAATCTTATCTCCCTGAAATTGCAGTAGAG
* * ** * *
129333741 CAGATTAAAGCCATTAGCATTATCTCCCTGAAGATGCAGTGGAGTGGTTTGAAATTACCAAGTCT
131 CAGATTAAAGCCA-TAACATCATCTCCCTGAAGATGCAGTGGAGAAGTTTAAAATTACCAAATCT
*
129333806 TAGTTCCCTGAAGTTGCAGTGGAATAAACTA
195 TAG-ACCCTGAAGTTGCAGTGGAATAAACTA
* *
129333837 AAGATAGCAAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTAAAACTATAAATCATATACCT
1 AAGATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAAC--TAAATCATATACCT
* * * * *
129333902 CTGAAGTTGCAGTAGGTCGGATCAAGT-TACCGTGGCAAATCTTATCTCCCTGAAGTTGCAGTGG
64 CTGAAGATGCAGTAGGTCGGATCAAATCTACCATGGCAAATCTTATCTCCCTGAAATTGCAGTAG
* * *
129333966 AGCAGATTGAAGTCGCA-AACCTCATCTCCCTGAAGATGCAGTGGAGCAAG-TTAAAATTATCAA
129 AGCAGATTAAAG-C-CATAACATCATCTCCCTGAAGATGCAGTGGAG-AAGTTTAAAATTACCAA
129334029 ATCTTA-ACCCT
191 ATCTTAGACCCT
129334040 TTGAAGTTCT
Statistics
Matches: 174, Mismatches: 24, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
225 4 0.02
226 44 0.25
227 85 0.49
228 39 0.22
229 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (224 bp):
AAGATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAACTAAATCATATACCTCT
GAAGATGCAGTAGGTCGGATCAAATCTACCATGGCAAATCTTATCTCCCTGAAATTGCAGTAGAG
CAGATTAAAGCCATAACATCATCTCCCTGAAGATGCAGTGGAGAAGTTTAAAATTACCAAATCTT
AGACCCTGAAGTTGCAGTGGAATAAACTA
Found at i:129335462 original size:20 final size:20
Alignment explanation
Indices: 129335425--129335462 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
129335415 TATTTATTCA
*
129335425 TCTTAAAATGTTTTTATTTT
1 TCTTAAAATGTTTATATTTT
129335445 TCTTAAAAT-TTATATATT
1 TCTTAAAATGTT-TATATT
129335463 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.61
Consensus pattern (20 bp):
TCTTAAAATGTTTATATTTT
Found at i:129349507 original size:503 final size:497
Alignment explanation
Indices: 129348566--129349568 Score: 1907
Period size: 503 Copynumber: 2.0 Consensus size: 497
129348556 AACAGCTGAA
129348566 GGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCAG
1 GGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCAG
*
129348631 AGCACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCCAAAAT
66 AACACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCCAAAAT
129348696 ATCCAGATCCAGATCATCATCATTGTTTCAGACATGACAATTTCTCATACTGTAACAAGTTAACA
131 ATCCAGATCCAGATCATCATCATTGTTTCAGACATGACAATTTCTCATACTGTAACAAGTTAACA
* *
129348761 ACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATATTAGTTTGCTACTACCATTCCTA
196 ACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATACTAGTTTGCTACTACCAGTCCTA
129348826 AACTTAAAGGGTGACTGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGATGAGGAT
261 AACTTAAAGGGTGACTGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGATGAGGAT
129348891 CCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAGTGGAAAACAAAGAAGACAGATA
326 CCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAGTGGAAAACAAAGAAGACAGATA
* *
129348956 ATTTGTAGTGAGATATACCTGCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGTTTTGTGA
391 ATTTGTAGTGAGATATAACTCCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGTTTTGTGA
129349021 TAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGATT
456 TAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGATT
129349063 GGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCAG
1 GGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCAG
129349128 AACACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCCAAAAT
66 AACACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCC-AAA-
129349193 ATCCAGATCCAGATCCAGATCATCATCATTGTTTCAGACATGACAATTTCTCATACTGTAACAAG
129 AT----ATCCAGATCCAGATCATCATCATTGTTTCAGACATGACAATTTCTCATACTGTAACAAG
129349258 TTAACAACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATACTAGTTTGCTACTACCA
190 TTAACAACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATACTAGTTTGCTACTACCA
129349323 GTCCTAAACTTAAAGGGTGACTGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGAT
255 GTCCTAAACTTAAAGGGTGACTGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGAT
129349388 GAGGATCCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAGTGGAAAACAAAGAAGA
320 GAGGATCCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAGTGGAAAACAAAGAAGA
129349453 CAGATAATTTGTAGTGAGATATAACTCCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGTT
385 CAGATAATTTGTAGTGAGATATAACTCCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGTT
129349518 TTGTGATAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGATT
450 TTGTGATAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGATT
129349566 GGG
1 GGG
129349569 GAAATGATAA
Statistics
Matches: 495, Mismatches: 5, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
497 124 0.25
498 3 0.01
499 2 0.00
503 366 0.74
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (497 bp):
GGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCAG
AACACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCCAAAAT
ATCCAGATCCAGATCATCATCATTGTTTCAGACATGACAATTTCTCATACTGTAACAAGTTAACA
ACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATACTAGTTTGCTACTACCAGTCCTA
AACTTAAAGGGTGACTGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGATGAGGAT
CCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAGTGGAAAACAAAGAAGACAGATA
ATTTGTAGTGAGATATAACTCCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGTTTTGTGA
TAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGATT
Found at i:129350671 original size:21 final size:21
Alignment explanation
Indices: 129350647--129350690 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
129350637 AATTAGAATA
129350647 TTAGAAACAAGTTATCCTATC
1 TTAGAAACAAGTTATCCTATC
129350668 TTAGAAACAAGTTATCCTATC
1 TTAGAAACAAGTTATCCTATC
129350689 TT
1 TT
129350691 GTTCAAGCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (21 bp):
TTAGAAACAAGTTATCCTATC
Found at i:129351787 original size:21 final size:21
Alignment explanation
Indices: 129351761--129351817 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
129351751 ATATCCTTTT
* *
129351761 CCGGTTCAGTATTTTTGGTGC
1 CCGGTTCAGTATTTTTAGTGA
*
129351782 CCGGTTCAGT-TGTTTTAGTTA
1 CCGGTTCAGTAT-TTTTAGTGA
129351803 CCGGTTCAG-ATTTTT
1 CCGGTTCAGTATTTTT
129351818 TATGTGTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 5 0.16
21 26 0.84
ACGTcount: A:0.12, C:0.18, G:0.25, T:0.46
Consensus pattern (21 bp):
CCGGTTCAGTATTTTTAGTGA
Found at i:129354430 original size:14 final size:14
Alignment explanation
Indices: 129354413--129354440 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
129354403 TATGACATTT
129354413 TTGTTTTGACCATG
1 TTGTTTTGACCATG
129354427 TTGTTTTGACCATG
1 TTGTTTTGACCATG
129354441 ACACTCATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (14 bp):
TTGTTTTGACCATG
Found at i:129356911 original size:14 final size:13
Alignment explanation
Indices: 129356892--129356931 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
129356882 GAGATTTTTA
129356892 AAAAAATTATATAT
1 AAAAAATTA-ATAT
129356906 AAAAAA-TAATAT
1 AAAAAATTAATAT
129356918 AAAAAATTCAATAT
1 AAAAAATT-AATAT
129356932 GCACGGGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.42
13 3 0.12
14 11 0.46
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAAAATTAATAT
Found at i:129356917 original size:12 final size:13
Alignment explanation
Indices: 129356892--129356924 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
129356882 GAGATTTTTA
129356892 AAAAAATTATATAT
1 AAAAAA-TATATAT
129356906 AAAAAATA-ATAT
1 AAAAAATATATAT
129356918 AAAAAAT
1 AAAAAAT
129356925 TCAATATGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 2 0.11
14 6 0.32
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
AAAAAATATATAT
Found at i:129368152 original size:23 final size:23
Alignment explanation
Indices: 129368126--129368172 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
129368116 ATAAATGTGT
129368126 ATGTTAAATTGAGCCATAAGGCA
1 ATGTTAAATTGAGCCATAAGGCA
129368149 ATGTTAAATTGAGCCATAAGGCA
1 ATGTTAAATTGAGCCATAAGGCA
129368172 A
1 A
129368173 CAAGAGATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (23 bp):
ATGTTAAATTGAGCCATAAGGCA
Found at i:129377029 original size:30 final size:32
Alignment explanation
Indices: 129376973--129377037 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 32
129376963 ATTCCTTGTA
* * *
129376973 GGGATATCCTATTCCACGGTTATCCCGG-TTG
1 GGGATAACCCATTCCACGGATATCCCGGTTTG
129377004 GGGATAACCCATTCCAC-GATATCCCGGTTTG
1 GGGATAACCCATTCCACGGATATCCCGGTTTG
129377035 GGG
1 GGG
129377038 TCTAAGGGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (32 bp):
GGGATAACCCATTCCACGGATATCCCGGTTTG
Found at i:129378825 original size:19 final size:19
Alignment explanation
Indices: 129378769--129378826 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 19
129378759 TTGGGATTTG
* *
129378769 GGGGTTAGGGTTCAGGGTTG
1 GGGGTTAGGGTTTAGGG-TC
* * *
129378789 GGGGTTTGGTTTTGGGGTC
1 GGGGTTAGGGTTTAGGGTC
*
129378808 GGGGTTCGGGTTTAGGGTC
1 GGGGTTAGGGTTTAGGGTC
129378827 ACTTTGTTTG
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.05, C:0.07, G:0.53, T:0.34
Consensus pattern (19 bp):
GGGGTTAGGGTTTAGGGTC
Found at i:129379713 original size:21 final size:20
Alignment explanation
Indices: 129379689--129379730 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
129379679 GGGAAAAATG
*
129379689 AATTTTTTTAAATAATATAAA
1 AATTTATTTAAA-AATATAAA
*
129379710 AATTTATTTAAAAATTTAAA
1 AATTTATTTAAAAATATAAA
129379730 A
1 A
129379731 CAAGTTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AATTTATTTAAAAATATAAA
Found at i:129389254 original size:78 final size:78
Alignment explanation
Indices: 129389125--129389275 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
129389115 CTCATATTCT
* * *
129389125 ACCATTAAACCATGATCCCTTGATCTCACCAGCTGGGAGAGTCGGTGATCATGTTGATAATGATC
1 ACCATTAAACCATGATCCCTTGATCGCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
129389190 ACCATGGAGTTCG
66 ACCATGGAGTTCG
* * * *
129389203 ACCATTAAACCCTGATCCCTTGATCGCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
1 ACCATTAAACCATGATCCCTTGATCGCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
129389268 ACCATGGA
66 ACCATGGA
129389276 CTTTGTGTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 66 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (78 bp):
ACCATTAAACCATGATCCCTTGATCGCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Found at i:129394670 original size:219 final size:217
Alignment explanation
Indices: 129394289--129394935 Score: 943
Period size: 219 Copynumber: 3.0 Consensus size: 217
129394279 TTCAGATTTA
* *
129394289 TGCTTATATTCGTTTTTTTAAATCTTGTGATGCCGTCATTTTTTTGATAGTTTATAGCCTGTTAT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGAT--CGTCATTTTTTTGATAGTTTATCGCCTGTTAT
* *
129394354 GTGTTTTATTT-TTTTTGTCGGTTGTTTTTTTCCCTCTTTAATCTGTATTGAGGGACATTTTCTT
64 GTGTTTTATTTATTTTTTTC-GTTGTTTGTTTCCCTC-TTAAT-TGTATTGAGGGACATTTTCTT
* * *
129394418 GCAAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATATTTCTAACAACTATATAAGC
126 GGAAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGT
*
129394483 ATCTACCCTAAAACCCTTATGAAACAC
191 ATCTACCCTAAAACCCTAATGAAACAC
* *
129394510 TGCTTATAGTCATCTTTTTAAATCTTGTGAT-GTCATTTTTTTGATAGTTTATCGCCTGTTATGT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGATCGTCATTTTTTTGATAGTTTATCGCCTGTTATGT
129394574 GTTTTATTTATTTTTTTCAGTTGTTTGTTTCCCTCTGTAATATGTATTGAGGGACATTTTCTTGG
66 GTTTTATTTATTTTTTTC-GTTGTTTGTTTCCCTCT-TAAT-TGTATTGAGGGACATTTTCTTGG
* *
129394639 AAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTATAATAACTATATAAGTAT
128 AAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGTAT
*
129394704 CTACCCTAAAACCCTAATGAAACGC
193 CTACCCTAAAACCCTAATGAAACAC
*
129394729 TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCGTCATTTTTTTGATAGTTTATCACCTGTTAT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGA--TCGTCATTTTTTTGATAGTTTATCGCCTGTTAT
* * * *
129394794 CTGTTTTATTTTATTTTTTTCGATTGTTTGCTT-CC-C-T--TTGTATTGAGGGACTTTTTCATG
64 GTGTTTTA-TTTATTTTTTTCG-TTGTTTGTTTCCCTCTTAATTGTATTGAGGGACATTTTCTTG
129394854 GAAATCTTT-AGTCCTATTTAT-ATGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGT
127 GAAATCTTTGAGTCCTATTTATGA-GATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGT
*
129394917 ATCTAACCTAAAACCCTAA
191 ATCTACCCTAAAACCCTAA
129394936 CTGATTAGCA
Statistics
Matches: 393, Mismatches: 25, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
214 1 0.00
215 68 0.17
216 29 0.07
217 1 0.00
218 42 0.11
219 161 0.41
221 30 0.08
222 40 0.10
223 21 0.05
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (217 bp):
TGCTTATATTCGTCTTTTTAAATCTTGTGATCGTCATTTTTTTGATAGTTTATCGCCTGTTATGT
GTTTTATTTATTTTTTTCGTTGTTTGTTTCCCTCTTAATTGTATTGAGGGACATTTTCTTGGAAA
TCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGTATCTA
CCCTAAAACCCTAATGAAACAC
Found at i:129408575 original size:219 final size:217
Alignment explanation
Indices: 129408194--129408840 Score: 943
Period size: 219 Copynumber: 3.0 Consensus size: 217
129408184 TTCAGATTTA
* *
129408194 TGCTTATATTCGTTTTTTTAAATCTTGTGATGCCGTCATTTTTTTGATAGTTTATAGCCTGTTAT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGAT--CGTCATTTTTTTGATAGTTTATCGCCTGTTAT
* *
129408259 GTGTTTTATTT-TTTTTGTCGGTTGTTTTTTTCCCTCTTTAATCTGTATTGAGGGACATTTTCTT
64 GTGTTTTATTTATTTTTTTC-GTTGTTTGTTTCCCTC-TTAAT-TGTATTGAGGGACATTTTCTT
* * *
129408323 GCAAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATATTTCTAACAACTATATAAGC
126 GGAAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGT
*
129408388 ATCTACCCTAAAACCCTTATGAAACAC
191 ATCTACCCTAAAACCCTAATGAAACAC
* *
129408415 TGCTTATAGTCATCTTTTTAAATCTTGTGAT-GTCATTTTTTTGATAGTTTATCGCCTGTTATGT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGATCGTCATTTTTTTGATAGTTTATCGCCTGTTATGT
129408479 GTTTTATTTATTTTTTTCAGTTGTTTGTTTCCCTCTGTAATATGTATTGAGGGACATTTTCTTGG
66 GTTTTATTTATTTTTTTC-GTTGTTTGTTTCCCTCT-TAAT-TGTATTGAGGGACATTTTCTTGG
* *
129408544 AAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTATAATAACTATATAAGTAT
128 AAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGTAT
*
129408609 CTACCCTAAAACCCTAATGAAACGC
193 CTACCCTAAAACCCTAATGAAACAC
*
129408634 TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCGTCATTTTTTTGATAGTTTATCACCTGTTAT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGA--TCGTCATTTTTTTGATAGTTTATCGCCTGTTAT
* * * *
129408699 CTGTTTTATTTTATTTTTTTCGATTGTTTGCTT-CC-C-T--TTGTATTGAGGGACTTTTTCATG
64 GTGTTTTA-TTTATTTTTTTCG-TTGTTTGTTTCCCTCTTAATTGTATTGAGGGACATTTTCTTG
129408759 GAAATCTTT-AGTCCTATTTAT-ATGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGT
127 GAAATCTTTGAGTCCTATTTATGA-GATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGT
*
129408822 ATCTAACCTAAAACCCTAA
191 ATCTACCCTAAAACCCTAA
129408841 CTGATTAGCA
Statistics
Matches: 393, Mismatches: 25, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
214 1 0.00
215 68 0.17
216 29 0.07
217 1 0.00
218 42 0.11
219 161 0.41
221 30 0.08
222 40 0.10
223 21 0.05
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (217 bp):
TGCTTATATTCGTCTTTTTAAATCTTGTGATCGTCATTTTTTTGATAGTTTATCGCCTGTTATGT
GTTTTATTTATTTTTTTCGTTGTTTGTTTCCCTCTTAATTGTATTGAGGGACATTTTCTTGGAAA
TCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGTATCTA
CCCTAAAACCCTAATGAAACAC
Found at i:129422552 original size:14 final size:14
Alignment explanation
Indices: 129422535--129422562 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
129422525 AGATTTACGT
129422535 TAAACAATTTTACA
1 TAAACAATTTTACA
129422549 TAAACAATTTTACA
1 TAAACAATTTTACA
129422563 CTATATCGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (14 bp):
TAAACAATTTTACA
Found at i:129427939 original size:20 final size:20
Alignment explanation
Indices: 129427914--129427983 Score: 79
Period size: 20 Copynumber: 3.4 Consensus size: 20
129427904 CCGAGAATAT
*
129427914 CCCGGTTCGGGTTTATTGAC
1 CCCGGTTCGGGTTTTTTGAC
* *
129427934 CCCGGTTC-GATTTTTGTGAA
1 CCCGGTTCGGGTTTTT-TGAC
129427954 CCCGGTTCGGGTTTTTTGGGAC
1 CCCGGTTCGGGTTTTTT--GAC
129427976 CCCGGTTC
1 CCCGGTTC
129427984 CCCTTTATTG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
19 5 0.12
20 20 0.49
21 6 0.15
22 10 0.24
ACGTcount: A:0.09, C:0.26, G:0.30, T:0.36
Consensus pattern (20 bp):
CCCGGTTCGGGTTTTTTGAC
Found at i:129427979 original size:22 final size:21
Alignment explanation
Indices: 129427934--129428101 Score: 112
Period size: 22 Copynumber: 7.9 Consensus size: 21
129427924 GTTTATTGAC
* *
129427934 CCCGGTTC-GATTTTTGTGAA
1 CCCGGTTCGGTTTTTTGGGAA
*
129427954 CCCGGTTCGGGTTTTTTGGGAC
1 CCCGGTTC-GGTTTTTTGGGAA
** *
129427976 CCCGGTTCCCCTTTATT-GG-A
1 CCCGGTT-CGGTTTTTTGGGAA
*
129427996 CTCGGTTCGGTTTTTTAAGGGAA
1 CCCGGTTCGGTTTTTT--GGGAA
* * *
129428019 CCCGATTCGATTTTTT--TAA
1 CCCGGTTCGGTTTTTTGGGAA
*
129428038 CTCTGGTTCGGTTTTTTTGGGAA
1 C-CCGGTTCGG-TTTTTTGGGAA
129428061 CCCGGTTCGGTTTTTTGGGGAA
1 CCCGGTTCGGTTTTTT-GGGAA
* *
129428083 CCCAGTTCGGGTTTATTGG
1 CCCGGTTC-GGTTTTTTGG
129428102 ACTCGGTTTA
Statistics
Matches: 113, Mismatches: 22, Indels: 24
0.71 0.14 0.15
Matches are distributed among these distances:
19 9 0.08
20 20 0.18
21 14 0.12
22 45 0.40
23 25 0.22
ACGTcount: A:0.12, C:0.20, G:0.28, T:0.40
Consensus pattern (21 bp):
CCCGGTTCGGTTTTTTGGGAA
Found at i:129428063 original size:42 final size:42
Alignment explanation
Indices: 129427995--129428076 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
129427985 CCTTTATTGG
129427995 ACTCGGTTCGGTTTTTTAAGGGAACCCGATTCGATTTTTTTA
1 ACTCGGTTCGGTTTTTTAAGGGAACCCGATTCGATTTTTTTA
* * *
129428037 ACTCTGGTTCGGTTTTTT-TGGGAACCCGGTTCGGTTTTTT
1 ACTC-GGTTCGGTTTTTTAAGGGAACCCGATTCGATTTTTT
129428077 GGGGAACCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 23 0.64
43 13 0.36
ACGTcount: A:0.13, C:0.17, G:0.24, T:0.45
Consensus pattern (42 bp):
ACTCGGTTCGGTTTTTTAAGGGAACCCGATTCGATTTTTTTA
Found at i:129428118 original size:7 final size:7
Alignment explanation
Indices: 129428106--129432106 Score: 7463
Period size: 7 Copynumber: 571.7 Consensus size: 7
129428096 TATTGGACTC
129428106 GGTTTAG
1 GGTTTAG
129428113 GGTTTAG
1 GGTTTAG
129428120 GGTTTAG
1 GGTTTAG
*
129428127 GGTTTGG
1 GGTTTAG
129428134 GGTTT-G
1 GGTTTAG
**
129428140 GGTTCGG
1 GGTTTAG
*
129428147 GGTTCAG
1 GGTTTAG
129428154 GGTTTAG
1 GGTTTAG
*
129428161 GGTTTTG
1 GGTTTAG
*
129428168 GGGTTAG
1 GGTTTAG
*
129428175 GGGTTAG
1 GGTTTAG
*
129428182 GGGTTAG
1 GGTTTAG
129428189 GGTTTTAG
1 GG-TTTAG
*
129428197 GGTTTAA
1 GGTTTAG
129428204 GGTTTAG
1 GGTTTAG
* *
129428211 GGGTCAG
1 GGTTTAG
129428218 GGTTTAG
1 GGTTTAG
*
129428225 GG-TCAG
1 GGTTTAG
* *
129428231 GGGTCAGG
1 GGTTTA-G
129428239 GGTTTAG
1 GGTTTAG
129428246 GG-TTAG
1 GGTTTAG
129428252 GGTTTAG
1 GGTTTAG
129428259 GGTTTAG
1 GGTTTAG
129428266 GGTTTAG
1 GGTTTAG
129428273 GGTTTAG
1 GGTTTAG
129428280 GGTTTAG
1 GGTTTAG
*
129428287 GTTTTAG
1 GGTTTAG
129428294 GGTTTAG
1 GGTTTAG
129428301 GGTTTAG
1 GGTTTAG
129428308 GGTTTAG
1 GGTTTAG
129428315 GGTTTAG
1 GGTTTAG
*
129428322 GGTTTGG
1 GGTTTAG
129428329 GGTTTAG
1 GGTTTAG
*
129428336 GGTTTGG
1 GGTTTAG
129428343 GGTTTAG
1 GGTTTAG
129428350 GGTTTAG
1 GGTTTAG
129428357 GGTTTTAG
1 GG-TTTAG
129428365 GGTTTAG
1 GGTTTAG
129428372 GGTTTAG
1 GGTTTAG
129428379 GGTTTAG
1 GGTTTAG
129428386 GGTTTAG
1 GGTTTAG
129428393 GGTTTAG
1 GGTTTAG
129428400 GGTTTAG
1 GGTTTAG
129428407 GGTTTAG
1 GGTTTAG
*
129428414 GGTTTGG
1 GGTTTAG
129428421 GGTTTA-
1 GGTTTAG
129428427 GGTTTAG
1 GGTTTAG
129428434 GGTTTAG
1 GGTTTAG
129428441 GGTTT-G
1 GGTTTAG
129428447 GGTTTAG
1 GGTTTAG
129428454 GGTTT-G
1 GGTTTAG
129428460 GGTTTAG
1 GGTTTAG
129428467 GGTTT-G
1 GGTTTAG
129428473 GGTTTAG
1 GGTTTAG
129428480 GGTTTAG
1 GGTTTAG
129428487 GGTTTAG
1 GGTTTAG
129428494 GGTTTAG
1 GGTTTAG
129428501 GGTTTAG
1 GGTTTAG
129428508 GGTTTAG
1 GGTTTAG
129428515 GGTTTAG
1 GGTTTAG
129428522 GGTTTAG
1 GGTTTAG
129428529 GGTTTAG
1 GGTTTAG
129428536 GG-TTAG
1 GGTTTAG
129428542 GGTTTAG
1 GGTTTAG
129428549 GGTTTAG
1 GGTTTAG
129428556 GGTTTAG
1 GGTTTAG
*
129428563 GG-TTGG
1 GGTTTAG
129428569 GGTTTAG
1 GGTTTAG
129428576 GG-TT-G
1 GGTTTAG
129428581 GGTTTAG
1 GGTTTAG
129428588 GGTTTAG
1 GGTTTAG
*
129428595 GG-TTGG
1 GGTTTAG
129428601 GGTTTTAG
1 GG-TTTAG
129428609 GGTTTAG
1 GGTTTAG
129428616 GGTTTAG
1 GGTTTAG
129428623 GGTTTAG
1 GGTTTAG
129428630 GGTTTAG
1 GGTTTAG
129428637 GGTTTAG
1 GGTTTAG
129428644 GGTTTTAG
1 GG-TTTAG
129428652 GGTTTAG
1 GGTTTAG
129428659 GGTTTAG
1 GGTTTAG
129428666 GGTTTTAG
1 GG-TTTAG
129428674 GGTTTTAG
1 GG-TTTAG
129428682 GGTTTTA-
1 GG-TTTAG
129428689 GGTTTAG
1 GGTTTAG
129428696 GGTTTAG
1 GGTTTAG
129428703 GGTTTTAG
1 GG-TTTAG
129428711 GGTTTAG
1 GGTTTAG
129428718 GGTTTAG
1 GGTTTAG
129428725 GGTTTAG
1 GGTTTAG
129428732 GGTTTAG
1 GGTTTAG
129428739 GGTTTAG
1 GGTTTAG
129428746 GGTTTAG
1 GGTTTAG
129428753 GGTTTAG
1 GGTTTAG
129428760 GGTTTTAG
1 GG-TTTAG
129428768 GGTTTAG
1 GGTTTAG
129428775 GGTTTAG
1 GGTTTAG
129428782 GGTTTAG
1 GGTTTAG
129428789 GGTTTAG
1 GGTTTAG
129428796 GGTTT-G
1 GGTTTAG
129428802 GGTTTAG
1 GGTTTAG
129428809 GGTTTTAG
1 GG-TTTAG
129428817 GGTTTAG
1 GGTTTAG
129428824 GGTTTTAG
1 GG-TTTAG
129428832 GGTTTAG
1 GGTTTAG
129428839 GGTTTAG
1 GGTTTAG
129428846 GGTTTAG
1 GGTTTAG
129428853 GGTTTAG
1 GGTTTAG
129428860 GGTTTTAG
1 GG-TTTAG
129428868 GGTTTAG
1 GGTTTAG
129428875 GGTTTAG
1 GGTTTAG
129428882 GGTTTAG
1 GGTTTAG
129428889 GGTTTAG
1 GGTTTAG
129428896 GGTTTAG
1 GGTTTAG
129428903 GGTTTAG
1 GGTTTAG
129428910 GGTTTAG
1 GGTTTAG
129428917 GGTTTAG
1 GGTTTAG
129428924 GGTTTAG
1 GGTTTAG
129428931 GGTTTAG
1 GGTTTAG
129428938 GGTTTAG
1 GGTTTAG
129428945 GGTTTAG
1 GGTTTAG
129428952 GGTTTAG
1 GGTTTAG
129428959 GGTTTAG
1 GGTTTAG
129428966 GGTTTAG
1 GGTTTAG
129428973 GGTTTAG
1 GGTTTAG
129428980 GGTTTAG
1 GGTTTAG
129428987 GGTTTAG
1 GGTTTAG
129428994 GGTTTAG
1 GGTTTAG
129429001 GGTTTAG
1 GGTTTAG
129429008 GGTTTTAG
1 GG-TTTAG
129429016 GGTTTAG
1 GGTTTAG
129429023 GGTTTAG
1 GGTTTAG
129429030 GGTTTAG
1 GGTTTAG
129429037 GGTTTAG
1 GGTTTAG
129429044 GGTTTAG
1 GGTTTAG
129429051 GGTTTAG
1 GGTTTAG
129429058 GGTTTAG
1 GGTTTAG
129429065 GGTTTAG
1 GGTTTAG
129429072 GGTTTAG
1 GGTTTAG
129429079 GGTTTAG
1 GGTTTAG
129429086 GGTTTAG
1 GGTTTAG
129429093 GGTTTAG
1 GGTTTAG
129429100 GGTTTAG
1 GGTTTAG
129429107 GGTTTAG
1 GGTTTAG
129429114 GGTTTAG
1 GGTTTAG
129429121 GGTTTAG
1 GGTTTAG
129429128 GGTTTAG
1 GGTTTAG
129429135 GGTTTAG
1 GGTTTAG
129429142 GGTTTAG
1 GGTTTAG
129429149 GGTTTAG
1 GGTTTAG
129429156 GGTTTAG
1 GGTTTAG
129429163 GGTTTAG
1 GGTTTAG
129429170 GGTTTAG
1 GGTTTAG
129429177 GGTTTAG
1 GGTTTAG
129429184 GGTTTAG
1 GGTTTAG
129429191 GGTTTAG
1 GGTTTAG
129429198 GGTTTAG
1 GGTTTAG
129429205 GGTTTAG
1 GGTTTAG
129429212 GGTTTAG
1 GGTTTAG
129429219 GGTTTAG
1 GGTTTAG
129429226 GGTTTAG
1 GGTTTAG
129429233 GGTTTAG
1 GGTTTAG
129429240 GGTTTAG
1 GGTTTAG
129429247 GGTTTAG
1 GGTTTAG
129429254 GGTTTAG
1 GGTTTAG
129429261 GGTTTAG
1 GGTTTAG
129429268 GGTTTAG
1 GGTTTAG
129429275 GGTTTAG
1 GGTTTAG
129429282 GGTTTAG
1 GGTTTAG
129429289 GGTTTAG
1 GGTTTAG
129429296 GGTTTAG
1 GGTTTAG
129429303 GGTTTAG
1 GGTTTAG
129429310 GGTTTAG
1 GGTTTAG
129429317 GGTTTAG
1 GGTTTAG
129429324 GGTTTAG
1 GGTTTAG
129429331 GGTTTAG
1 GGTTTAG
129429338 GGTTTAG
1 GGTTTAG
129429345 GGTTTAG
1 GGTTTAG
129429352 GGTTTAG
1 GGTTTAG
129429359 GGTTTAG
1 GGTTTAG
129429366 GGTTTAG
1 GGTTTAG
129429373 GGTTTAG
1 GGTTTAG
129429380 GGTTTAG
1 GGTTTAG
129429387 GGTTTAG
1 GGTTTAG
129429394 GGTTTAG
1 GGTTTAG
129429401 GGTTTAG
1 GGTTTAG
129429408 GGTTTAG
1 GGTTTAG
129429415 GGTTTAG
1 GGTTTAG
129429422 GGTTTAG
1 GGTTTAG
129429429 GGTTTAG
1 GGTTTAG
129429436 GGTTTAG
1 GGTTTAG
129429443 GGTTTAG
1 GGTTTAG
129429450 GGTTTAG
1 GGTTTAG
129429457 GGTTTAG
1 GGTTTAG
129429464 GGTTTAG
1 GGTTTAG
129429471 GGTTTAG
1 GGTTTAG
129429478 GGTTTAG
1 GGTTTAG
129429485 GGTTTAG
1 GGTTTAG
129429492 GGTTTAG
1 GGTTTAG
129429499 GGTTTAG
1 GGTTTAG
129429506 GGTTTAG
1 GGTTTAG
129429513 GGTTTAG
1 GGTTTAG
129429520 GGTTTAG
1 GGTTTAG
129429527 GGTTTAG
1 GGTTTAG
129429534 GGTTTAG
1 GGTTTAG
129429541 GGTTTAG
1 GGTTTAG
129429548 GGTTTAG
1 GGTTTAG
129429555 GGTTTAG
1 GGTTTAG
129429562 GGTTTAG
1 GGTTTAG
129429569 GGTTTAG
1 GGTTTAG
129429576 GGTTTTAG
1 GG-TTTAG
129429584 GGTTTAG
1 GGTTTAG
129429591 GGTTTAG
1 GGTTTAG
129429598 GGTTTAG
1 GGTTTAG
129429605 GGTTTAG
1 GGTTTAG
129429612 GGTTTAG
1 GGTTTAG
129429619 GGTTTAG
1 GGTTTAG
129429626 GGTTTAG
1 GGTTTAG
129429633 GGTTTAG
1 GGTTTAG
129429640 GGTTTAG
1 GGTTTAG
129429647 GGTTTAG
1 GGTTTAG
129429654 GGTTTAG
1 GGTTTAG
129429661 GGTTTAG
1 GGTTTAG
129429668 GGTTTAG
1 GGTTTAG
129429675 GGTTTAG
1 GGTTTAG
129429682 GGTTTAG
1 GGTTTAG
129429689 GGTTTAG
1 GGTTTAG
129429696 GGTTTAG
1 GGTTTAG
129429703 GGTTTAG
1 GGTTTAG
129429710 GGTTTAG
1 GGTTTAG
129429717 GGTTTAG
1 GGTTTAG
129429724 GGTTTAG
1 GGTTTAG
129429731 GGTTTAG
1 GGTTTAG
129429738 GGTTTAG
1 GGTTTAG
129429745 GGTTTAG
1 GGTTTAG
129429752 GGTTTAG
1 GGTTTAG
129429759 GGTTTAG
1 GGTTTAG
129429766 GGTTTAG
1 GGTTTAG
129429773 GGTTTAG
1 GGTTTAG
129429780 GGTTTAG
1 GGTTTAG
129429787 GGTTTAG
1 GGTTTAG
129429794 GGTTTAG
1 GGTTTAG
129429801 GGTTTAG
1 GGTTTAG
129429808 GGTTTAG
1 GGTTTAG
129429815 GGTTTAG
1 GGTTTAG
129429822 GGTTTAG
1 GGTTTAG
129429829 GGTTTAG
1 GGTTTAG
129429836 GGTTTAG
1 GGTTTAG
129429843 GGTTTAG
1 GGTTTAG
129429850 GGTTTAG
1 GGTTTAG
129429857 GGTTTAG
1 GGTTTAG
129429864 GGTTTAG
1 GGTTTAG
129429871 GGTTTAG
1 GGTTTAG
129429878 GGTTTAG
1 GGTTTAG
129429885 GGTTTAG
1 GGTTTAG
129429892 GGTTTAG
1 GGTTTAG
129429899 GGTTTAG
1 GGTTTAG
129429906 GGTTTAG
1 GGTTTAG
129429913 GGTTTAG
1 GGTTTAG
129429920 GGTTTAG
1 GGTTTAG
129429927 GGTTTAG
1 GGTTTAG
129429934 GGTTTAG
1 GGTTTAG
129429941 GGTTTAG
1 GGTTTAG
129429948 GGTTTAG
1 GGTTTAG
129429955 GGTTTAG
1 GGTTTAG
129429962 GGTTTAG
1 GGTTTAG
129429969 GGTTTAG
1 GGTTTAG
129429976 GGTTTAG
1 GGTTTAG
129429983 GGTTTAG
1 GGTTTAG
129429990 GGTTTAG
1 GGTTTAG
129429997 GGTTTAG
1 GGTTTAG
129430004 GGTTTAG
1 GGTTTAG
129430011 GGTTTAG
1 GGTTTAG
129430018 GGTTTAG
1 GGTTTAG
129430025 GGTTTAG
1 GGTTTAG
129430032 GGTTTAG
1 GGTTTAG
129430039 GGTTTAG
1 GGTTTAG
129430046 GGTTTAG
1 GGTTTAG
129430053 GGTTTAG
1 GGTTTAG
129430060 GGTTTAG
1 GGTTTAG
129430067 GGTTTAG
1 GGTTTAG
129430074 GGTTTAG
1 GGTTTAG
129430081 GGTTTAG
1 GGTTTAG
129430088 GGTTTAG
1 GGTTTAG
129430095 GGTTTAG
1 GGTTTAG
129430102 GGTTTAG
1 GGTTTAG
129430109 GGTTTAG
1 GGTTTAG
129430116 GGTTTAG
1 GGTTTAG
129430123 GGTTTAG
1 GGTTTAG
129430130 GGTTTAG
1 GGTTTAG
129430137 GGTTTAG
1 GGTTTAG
129430144 GGTTTAG
1 GGTTTAG
129430151 GGTTTAG
1 GGTTTAG
129430158 GGTTTAG
1 GGTTTAG
129430165 GGTTTAG
1 GGTTTAG
129430172 GGTTTAG
1 GGTTTAG
129430179 GGTTTAG
1 GGTTTAG
129430186 GGTTTAG
1 GGTTTAG
129430193 GGTTTAG
1 GGTTTAG
129430200 GGTTTAG
1 GGTTTAG
129430207 GGTTTAG
1 GGTTTAG
129430214 GGTTTAG
1 GGTTTAG
129430221 GGTTTAG
1 GGTTTAG
129430228 GGTTTAG
1 GGTTTAG
129430235 GGTTTAG
1 GGTTTAG
129430242 GGTTTAG
1 GGTTTAG
129430249 GGTTTAG
1 GGTTTAG
129430256 GGTTTAG
1 GGTTTAG
129430263 GGTTTAG
1 GGTTTAG
129430270 GGTTTAG
1 GGTTTAG
129430277 GGTTTAG
1 GGTTTAG
129430284 GGTTTAG
1 GGTTTAG
129430291 GGTTTA-
1 GGTTTAG
129430297 GGTTTAG
1 GGTTTAG
129430304 GGTTTAG
1 GGTTTAG
129430311 GGTTTAG
1 GGTTTAG
129430318 GGTTTAG
1 GGTTTAG
129430325 GGTTTAG
1 GGTTTAG
129430332 GGTTTAG
1 GGTTTAG
129430339 GGTTTAG
1 GGTTTAG
129430346 GGTTTAG
1 GGTTTAG
129430353 GGTTTAG
1 GGTTTAG
129430360 GGTTTAG
1 GGTTTAG
129430367 GGTTTAG
1 GGTTTAG
129430374 GGTTTAG
1 GGTTTAG
129430381 GGTTTAG
1 GGTTTAG
129430388 GGTTTAG
1 GGTTTAG
129430395 GG-TTA-
1 GGTTTAG
129430400 GG-TTAG
1 GGTTTAG
129430406 GGTTTAG
1 GGTTTAG
129430413 GGTTTAG
1 GGTTTAG
129430420 GGTTTAG
1 GGTTTAG
129430427 GGTTTAG
1 GGTTTAG
129430434 GGTTTAG
1 GGTTTAG
129430441 GGTTTAG
1 GGTTTAG
129430448 GGTTTAG
1 GGTTTAG
129430455 GGTTTAG
1 GGTTTAG
129430462 GGTTTAG
1 GGTTTAG
129430469 GGTTTAG
1 GGTTTAG
129430476 GGTTTAG
1 GGTTTAG
129430483 GGTTTAG
1 GGTTTAG
129430490 GGTTTAG
1 GGTTTAG
129430497 GGTTTAG
1 GGTTTAG
129430504 GGTTTAG
1 GGTTTAG
129430511 GGTTTAG
1 GGTTTAG
129430518 GGTTTAG
1 GGTTTAG
129430525 GGTTTAG
1 GGTTTAG
129430532 GGTTTAG
1 GGTTTAG
129430539 GGTTTAG
1 GGTTTAG
129430546 GGTTTAG
1 GGTTTAG
129430553 GGTTTAG
1 GGTTTAG
129430560 GGTTTAG
1 GGTTTAG
129430567 GGTTTAG
1 GGTTTAG
129430574 GGTTTAG
1 GGTTTAG
129430581 GGTTTAG
1 GGTTTAG
129430588 GGTTTAG
1 GGTTTAG
129430595 GGTTTAG
1 GGTTTAG
129430602 GGTTTAG
1 GGTTTAG
129430609 GGTTTAG
1 GGTTTAG
129430616 GGTTTAG
1 GGTTTAG
129430623 GGTTTAG
1 GGTTTAG
129430630 GGTTTAG
1 GGTTTAG
129430637 GGTTTAG
1 GGTTTAG
129430644 GGTTTAG
1 GGTTTAG
129430651 GGTTTAG
1 GGTTTAG
129430658 GGTTTAG
1 GGTTTAG
129430665 GGTTTAG
1 GGTTTAG
129430672 GGTTTAG
1 GGTTTAG
129430679 GGTTTAG
1 GGTTTAG
129430686 GGTTTAG
1 GGTTTAG
129430693 GGTTTAG
1 GGTTTAG
129430700 GGTTTAG
1 GGTTTAG
129430707 GGTTTAG
1 GGTTTAG
129430714 GGTTTAG
1 GGTTTAG
129430721 GGTTTAG
1 GGTTTAG
129430728 GGTTTAG
1 GGTTTAG
129430735 GGTTTAG
1 GGTTTAG
129430742 GGTTTAG
1 GGTTTAG
129430749 GGTTTAG
1 GGTTTAG
129430756 GGTTTAG
1 GGTTTAG
129430763 GGTTTAG
1 GGTTTAG
129430770 GGTTTAG
1 GGTTTAG
129430777 GGTTTAG
1 GGTTTAG
129430784 GGTTTAG
1 GGTTTAG
129430791 GGTTTAG
1 GGTTTAG
129430798 GGTTTAG
1 GGTTTAG
129430805 GGTTTAG
1 GGTTTAG
129430812 GGTTTAG
1 GGTTTAG
129430819 GGTTTAG
1 GGTTTAG
129430826 GGTTTAG
1 GGTTTAG
129430833 GGTTTAG
1 GGTTTAG
129430840 GGTTTAG
1 GGTTTAG
129430847 GGTTTAG
1 GGTTTAG
129430854 GGTTTAG
1 GGTTTAG
129430861 GGTTTAG
1 GGTTTAG
129430868 GGTTTAG
1 GGTTTAG
129430875 GGTTTAG
1 GGTTTAG
129430882 GGTTTAG
1 GGTTTAG
129430889 GGTTTAG
1 GGTTTAG
129430896 GGTTTAG
1 GGTTTAG
129430903 GGTTTAG
1 GGTTTAG
129430910 GGTTTAG
1 GGTTTAG
129430917 GGTTTAG
1 GGTTTAG
129430924 GGTTTAG
1 GGTTTAG
129430931 GGTTTAG
1 GGTTTAG
129430938 GGTTTAG
1 GGTTTAG
129430945 GGTTTAG
1 GGTTTAG
129430952 GGTTTAG
1 GGTTTAG
129430959 GGTTTAG
1 GGTTTAG
129430966 GGTTTAG
1 GGTTTAG
129430973 GGTTTAG
1 GGTTTAG
129430980 GGTTTAG
1 GGTTTAG
129430987 GGTTTAG
1 GGTTTAG
129430994 GGTTTAG
1 GGTTTAG
129431001 GGTTTAG
1 GGTTTAG
129431008 GGTTTAG
1 GGTTTAG
129431015 GGTTTAG
1 GGTTTAG
129431022 GGTTTAG
1 GGTTTAG
129431029 GGTTTAG
1 GGTTTAG
129431036 GGTTTTAG
1 GG-TTTAG
129431044 GGTTTAG
1 GGTTTAG
129431051 GGTTTAG
1 GGTTTAG
129431058 GGTTTAG
1 GGTTTAG
129431065 GGTTTAG
1 GGTTTAG
129431072 GGTTTAG
1 GGTTTAG
129431079 GGTTTAG
1 GGTTTAG
129431086 GGTTTAG
1 GGTTTAG
129431093 GGTTTAG
1 GGTTTAG
129431100 GGTTTAG
1 GGTTTAG
129431107 GGTTTAG
1 GGTTTAG
129431114 GGTTTAG
1 GGTTTAG
129431121 GGTTTAG
1 GGTTTAG
129431128 GGTTTAG
1 GGTTTAG
129431135 GGTTTAG
1 GGTTTAG
129431142 GGTTTAG
1 GGTTTAG
129431149 GGTTTAG
1 GGTTTAG
129431156 GGTTTAG
1 GGTTTAG
129431163 GGTTTAG
1 GGTTTAG
129431170 GGTTTAG
1 GGTTTAG
129431177 GGTTTAG
1 GGTTTAG
129431184 GGTTTAG
1 GGTTTAG
129431191 GGTTTAG
1 GGTTTAG
129431198 GGTTTAG
1 GGTTTAG
129431205 GGTTTAG
1 GGTTTAG
129431212 GGTTTAG
1 GGTTTAG
129431219 GGTTTAG
1 GGTTTAG
129431226 GGTTTAG
1 GGTTTAG
129431233 GGTTTTAG
1 GG-TTTAG
129431241 GGTTTAG
1 GGTTTAG
129431248 GGTTTAG
1 GGTTTAG
129431255 GGTTTAG
1 GGTTTAG
129431262 GGTTTAG
1 GGTTTAG
129431269 GGTTTAG
1 GGTTTAG
129431276 GGTTTAG
1 GGTTTAG
129431283 GGTTTAG
1 GGTTTAG
129431290 GGTTTAG
1 GGTTTAG
129431297 GGTTTAG
1 GGTTTAG
129431304 GGTTTAG
1 GGTTTAG
129431311 GGTTTAG
1 GGTTTAG
129431318 GGTTTAG
1 GGTTTAG
129431325 GGTTTAG
1 GGTTTAG
129431332 GGTTTAG
1 GGTTTAG
129431339 GGTTTAG
1 GGTTTAG
129431346 GGTTTAG
1 GGTTTAG
129431353 GGTTTAG
1 GGTTTAG
129431360 GGTTTAG
1 GGTTTAG
129431367 GGTTTAG
1 GGTTTAG
129431374 GGTTTAG
1 GGTTTAG
129431381 GGTTTAG
1 GGTTTAG
129431388 GGTTTAG
1 GGTTTAG
129431395 GGTTTAG
1 GGTTTAG
129431402 GGTTTAG
1 GGTTTAG
129431409 GGTTTAG
1 GGTTTAG
129431416 GGTTTAG
1 GGTTTAG
129431423 GGTTTAG
1 GGTTTAG
129431430 GGTTTAG
1 GGTTTAG
129431437 GGTTTAG
1 GGTTTAG
129431444 GGTTTAG
1 GGTTTAG
129431451 GGTTTAG
1 GGTTTAG
129431458 GGTTTAG
1 GGTTTAG
129431465 GGTTTAG
1 GGTTTAG
129431472 GGTTTTAG
1 GG-TTTAG
129431480 GGTTTAG
1 GGTTTAG
129431487 GGTTTAG
1 GGTTTAG
129431494 GGTTTAG
1 GGTTTAG
129431501 GGTTTAG
1 GGTTTAG
129431508 GGTTTAG
1 GGTTTAG
129431515 GGTTTAG
1 GGTTTAG
129431522 GGTTTAG
1 GGTTTAG
129431529 GGTTTAG
1 GGTTTAG
129431536 GGTTTAG
1 GGTTTAG
129431543 GGTTTAG
1 GGTTTAG
129431550 GGTTTAG
1 GGTTTAG
129431557 GGTTTAG
1 GGTTTAG
129431564 GGTTTAG
1 GGTTTAG
129431571 GGTTTAG
1 GGTTTAG
129431578 GGTTTA-
1 GGTTTAG
129431584 GGTTTAG
1 GGTTTAG
129431591 GGTTTAG
1 GGTTTAG
129431598 GGTTTAG
1 GGTTTAG
129431605 GGTTTAG
1 GGTTTAG
129431612 GGTTTTAG
1 GG-TTTAG
129431620 GGTTTAG
1 GGTTTAG
129431627 GGTTTAG
1 GGTTTAG
129431634 GGTTTAG
1 GGTTTAG
129431641 GGTTTAG
1 GGTTTAG
129431648 GGTTTAG
1 GGTTTAG
129431655 GGTTTTAG
1 GG-TTTAG
129431663 GGTTTA-
1 GGTTTAG
129431669 GGTTTAG
1 GGTTTAG
129431676 GGTTTAG
1 GGTTTAG
129431683 GGTTTAG
1 GGTTTAG
129431690 GGTTTAG
1 GGTTTAG
129431697 GGTTTAG
1 GGTTTAG
129431704 GGTTTAG
1 GGTTTAG
129431711 GGTTTAG
1 GGTTTAG
129431718 GGTTTTAG
1 GG-TTTAG
129431726 GGTTTAG
1 GGTTTAG
129431733 GGTTTTAG
1 GG-TTTAG
129431741 GGTTTAG
1 GGTTTAG
129431748 GGTTTAG
1 GGTTTAG
129431755 GGTTTAG
1 GGTTTAG
129431762 GGTTTAG
1 GGTTTAG
129431769 GGTTTAG
1 GGTTTAG
129431776 GGTTTAG
1 GGTTTAG
129431783 GGTTTAG
1 GGTTTAG
129431790 GGTTTAG
1 GGTTTAG
129431797 GGTTTAG
1 GGTTTAG
129431804 GGTTTAG
1 GGTTTAG
129431811 GGTTTAG
1 GGTTTAG
129431818 GGTTTAG
1 GGTTTAG
129431825 GGTTTAG
1 GGTTTAG
129431832 GGTTTAG
1 GGTTTAG
129431839 GGTTTAG
1 GGTTTAG
129431846 GGTTTAG
1 GGTTTAG
129431853 GGTTTAG
1 GGTTTAG
129431860 GGTTTAG
1 GGTTTAG
129431867 GG-TTAG
1 GGTTTAG
129431873 GGTTTAG
1 GGTTTAG
129431880 GGTTTAG
1 GGTTTAG
129431887 GGTTTAG
1 GGTTTAG
129431894 GGTTTAG
1 GGTTTAG
129431901 GGTTTAG
1 GGTTTAG
129431908 GGTTTAG
1 GGTTTAG
129431915 GGTTTAG
1 GGTTTAG
129431922 GGTTTAG
1 GGTTTAG
129431929 GGTTTAG
1 GGTTTAG
129431936 GGTTTAG
1 GGTTTAG
129431943 GGTTTAG
1 GGTTTAG
129431950 GGTTTAG
1 GGTTTAG
129431957 GGTTTAG
1 GGTTTAG
129431964 GGTTTAG
1 GGTTTAG
129431971 GGTTTAG
1 GGTTTAG
129431978 GGTTTAG
1 GGTTTAG
129431985 GGTTTAG
1 GGTTTAG
129431992 GGTTTAG
1 GGTTTAG
129431999 GGTTTAG
1 GGTTTAG
129432006 GG-TTAG
1 GGTTTAG
129432012 GGTTTAG
1 GGTTTAG
129432019 GGTTTAG
1 GGTTTAG
129432026 GGTTTAG
1 GGTTTAG
129432033 GGTTTAG
1 GGTTTAG
129432040 GGTTTAG
1 GGTTTAG
129432047 GGTTTAG
1 GGTTTAG
129432054 GGTTTAG
1 GGTTTAG
129432061 GG-TTAG
1 GGTTTAG
129432067 GGTTTAG
1 GGTTTAG
129432074 GGTTTAG
1 GGTTTAG
129432081 GGTTTAG
1 GGTTTAG
129432088 GGTTTAG
1 GGTTTAG
129432095 GGTTTAG
1 GGTTTAG
129432102 GGTTT
1 GGTTT
129432107 TAG
Statistics
Matches: 3923, Mismatches: 29, Indels: 84
0.97 0.01 0.02
Matches are distributed among these distances:
5 8 0.00
6 111 0.03
7 3656 0.93
8 148 0.04
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Done.