Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 45 of 425
Found at i:11959349 original size:37 final size:36
Alignment explanation
Indices: 11959233--11959363 Score: 111
Period size: 37 Copynumber: 3.5 Consensus size: 36
11959223 AATAGAAGTA
* * * * *
11959233 ATTCCCTACAAAGAAAAAGATGGAGATAAATAGTAAAG
1 ATTCTCTACGAAG-AAAAGATAGAGATGAACAG-AAAG
* * * *
11959271 ATCCTCCACGAAGAAAAAATGGAGATGAACAGAAATG
1 ATTCTCTACGAAGAAAAGATAGAGATGAACAGAAA-G
11959308 ATTCTCTACGAAGAAAAGATAGAGATGAACAAGAACA-
1 ATTCTCTACGAAGAAAAGATAGAGATGAAC-AGAA-AG
* *
11959345 ATTCTCTACCAAAAAAAGA
1 ATTCTCTACGAAGAAAAGA
11959364 AAAAAAAAGA
Statistics
Matches: 77, Mismatches: 13, Indels: 7
0.79 0.13 0.07
Matches are distributed among these distances:
36 3 0.04
37 60 0.78
38 13 0.17
39 1 0.01
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.17
Consensus pattern (36 bp):
ATTCTCTACGAAGAAAAGATAGAGATGAACAGAAAG
Found at i:11960465 original size:16 final size:16
Alignment explanation
Indices: 11960444--11960477 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
11960434 TAAAGTAAAT
* *
11960444 AAAATAAGTAAAGTTA
1 AAAATAAGAAAACTTA
11960460 AAAATAAGAAAACTTA
1 AAAATAAGAAAACTTA
11960476 AA
1 AA
11960478 GAATTAGTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (16 bp):
AAAATAAGAAAACTTA
Found at i:11962145 original size:21 final size:19
Alignment explanation
Indices: 11962117--11962156 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
11962107 CGTCAAAGTT
11962117 TAAGTTTATCACAAACTTAC
1 TAAGTTTAT-ACAAACTTAC
*
11962137 TAAGCTTTATGCAAACTTAC
1 TAAG-TTTATACAAACTTAC
11962157 CTCGTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35
Consensus pattern (19 bp):
TAAGTTTATACAAACTTAC
Found at i:11965258 original size:34 final size:37
Alignment explanation
Indices: 11965131--11965258 Score: 111
Period size: 37 Copynumber: 3.5 Consensus size: 37
11965121 GAAGAAATAT
* ** * * *
11965131 AGATGAACAAGAGTGATTCTCTACAAAGAAAAGACGG
1 AGATGAACAATAACGATTCTCTGCAAAGAAAATACAG
* *
11965168 AGATGAAC-ATGAACGACTCTTTGCAAAGAAAATACAG
1 AGATGAACAAT-AACGATTCTCTGCAAAGAAAATACAG
* ** *
11965205 AGATGAATAATAAAAATTCTCTGCATAGAAAA-A-A-
1 AGATGAACAATAACGATTCTCTGCAAAGAAAATACAG
11965239 AGATGAACAATAACGATTCT
1 AGATGAACAATAACGATTCT
11965259 ATTCAAAAAT
Statistics
Matches: 72, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
34 17 0.24
35 1 0.01
36 2 0.03
37 50 0.69
38 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.20
Consensus pattern (37 bp):
AGATGAACAATAACGATTCTCTGCAAAGAAAATACAG
Found at i:11968180 original size:28 final size:28
Alignment explanation
Indices: 11968143--11968207 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
11968133 CACGTCTTAC
*
11968143 TATTATATATATATATATATTATGTA-TAT
1 TATTA-ATATATATATAT-TTATGAAGTAT
*
11968172 TTTTAATATATATATATTTATGAAGTAT
1 TATTAATATATATATATTTATGAAGTAT
11968200 TATTAATA
1 TATTAATA
11968208 GTTGTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 6 0.19
28 22 0.69
29 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.54
Consensus pattern (28 bp):
TATTAATATATATATATTTATGAAGTAT
Found at i:11968189 original size:17 final size:16
Alignment explanation
Indices: 11968146--11968192 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 16
11968136 GTCTTACTAT
*
11968146 TATATATATATATATA
1 TATATATATATATTTA
* *
11968162 T-TATGTATATTTTTA
1 TATATATATATATTTA
11968177 -ATATATATATATTTA
1 TATATATATATATTTA
11968192 T
1 T
11968193 GAAGTATTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
15 23 0.96
16 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TATATATATATATTTA
Found at i:11968253 original size:11 final size:11
Alignment explanation
Indices: 11968237--11968302 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
11968227 TTATTTCTAA
11968237 TATGTATATAT
1 TATGTATATAT
*
11968248 TATGTAAATATT
1 TATGTATATA-T
11968260 CTAATGT-TATAT
1 -T-ATGTATATAT
*
11968272 TATATATATAT
1 TATGTATATAT
11968283 TCA--TA-ATAT
1 T-ATGTATATAT
11968292 TATGTATATAT
1 TATGTATATAT
11968303 GTTTTTAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
8 1 0.02
9 5 0.11
10 7 0.16
11 20 0.45
12 3 0.07
13 4 0.09
14 4 0.09
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (11 bp):
TATGTATATAT
Found at i:11968282 original size:24 final size:25
Alignment explanation
Indices: 11968238--11968302 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
11968228 TATTTCTAAT
* *
11968238 ATGTATATATTATGTAAATATTC-TA
1 ATGT-TATATTATATATATATTCATA
11968263 ATGTTATATTATATATATATTCATA
1 ATGTTATATTATATATATATTCATA
* *
11968288 ATATTAT-GTATATAT
1 ATGTTATATTATATAT
11968303 GTTTTTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (25 bp):
ATGTTATATTATATATATATTCATA
Found at i:11968382 original size:19 final size:19
Alignment explanation
Indices: 11968358--11968394 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
11968348 TAGTATTTTT
11968358 TATTATTACTT-TATTTTAG
1 TATTATTA-TTATATTTTAG
11968377 TATTATTATTATATTTTA
1 TATTATTATTATATTTTA
11968395 TTTACTTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (19 bp):
TATTATTATTATATTTTAG
Found at i:11968908 original size:24 final size:23
Alignment explanation
Indices: 11968852--11968911 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 23
11968842 TACATGCATA
* *
11968852 TATATATTATGTGTATATTCTTT
1 TATATATTATGTATATATTATTT
11968875 TAATAGATATTATGTATATATATATTT
1 T-AT--ATATTATGTATATAT-TATTT
11968902 TATATATTAT
1 TATATATTAT
11968912 TTTTAACTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
23 1 0.03
24 9 0.29
26 16 0.52
27 5 0.16
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (23 bp):
TATATATTATGTATATATTATTT
Found at i:11970860 original size:37 final size:37
Alignment explanation
Indices: 11970826--11970905 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
11970816 ACTAAAGATC
*
11970826 GAGATGAACAAGAGTGATTCTCTA-AAATGAAAAGACA
1 GAGATGAACAAGAATGATTCTCTACAAA-GAAAAGACA
* *
11970863 GAGATGAACATGAATGATTCTCTACAAAGAAAAGAGA
1 GAGATGAACAAGAATGATTCTCTACAAAGAAAAGACA
11970900 GAGATG
1 GAGATG
11970906 GATAGTAGAG
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
37 36 0.92
38 3 0.08
ACGTcount: A:0.47, C:0.10, G:0.24, T:0.19
Consensus pattern (37 bp):
GAGATGAACAAGAATGATTCTCTACAAAGAAAAGACA
Found at i:11979038 original size:53 final size:53
Alignment explanation
Indices: 11978958--11979064 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
11978948 TTTGTTGTAA
11978958 ACAAAAATAAGCTGCCACCAGTGGCATCAATAGCAGCAGTCCAACAGAGAAGG
1 ACAAAAATAAGCTGCCACCAGTGGCATCAATAGCAGCAGTCCAACAGAGAAGG
11979011 ACAAAAATAAGCTGCCACCAGTGGCATCAATAGCAGCAGTCCAACAGAGAAGG
1 ACAAAAATAAGCTGCCACCAGTGGCATCAATAGCAGCAGTCCAACAGAGAAGG
11979064 A
1 A
11979065 GCGATCTTGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.42, C:0.24, G:0.22, T:0.11
Consensus pattern (53 bp):
ACAAAAATAAGCTGCCACCAGTGGCATCAATAGCAGCAGTCCAACAGAGAAGG
Found at i:11979286 original size:20 final size:20
Alignment explanation
Indices: 11979233--11979288 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
11979223 GAAATTTCTG
*
11979233 AAAATAACTTTAAAA-GAATA
1 AAAAT-ACTTTAAAATGAAAA
* *
11979253 AAAATA-TGTAAAAATTAAAA
1 AAAATACT-TTAAAATGAAAA
11979273 AAAATACTTTAAAATG
1 AAAATACTTTAAAATG
11979289 GGTTTTATTG
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
18 1 0.04
19 6 0.21
20 20 0.71
21 1 0.04
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.27
Consensus pattern (20 bp):
AAAATACTTTAAAATGAAAA
Found at i:11983671 original size:14 final size:13
Alignment explanation
Indices: 11983650--11983690 Score: 66
Period size: 14 Copynumber: 3.2 Consensus size: 13
11983640 CATACAAATT
11983650 AGAAGAAAAAGAA
1 AGAAGAAAAAGAA
11983663 AGAAAGAAAAAGAA
1 AG-AAGAAAAAGAA
11983677 AGAAG-AAAAGAA
1 AGAAGAAAAAGAA
11983689 AG
1 AG
11983691 TCACACACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.33
13 5 0.19
14 13 0.48
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AGAAGAAAAAGAA
Found at i:11985778 original size:12 final size:12
Alignment explanation
Indices: 11985761--11985785 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11985751 TTGGGAATTT
11985761 TTCCAAAAGAAA
1 TTCCAAAAGAAA
11985773 TTCCAAAAGAAA
1 TTCCAAAAGAAA
11985785 T
1 T
11985786 ATATTGGCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (12 bp):
TTCCAAAAGAAA
Found at i:11989871 original size:21 final size:21
Alignment explanation
Indices: 11989847--11989914 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
11989837 ACTAATATGA
11989847 GTTTCTGTTTAACCCTAATGG
1 GTTTCTGTTTAACCCTAATGG
* * * *
11989868 GTTTCCGTTTAGA-TCTATTGA
1 GTTTCTGTTTA-ACCCTAATGG
* * *
11989889 GCTTCTATTTAACCCTTATGG
1 GTTTCTGTTTAACCCTAATGG
11989910 GTTTC
1 GTTTC
11989915 CATTCAGCTC
Statistics
Matches: 33, Mismatches: 12, Indels: 4
0.67 0.24 0.08
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.46
Consensus pattern (21 bp):
GTTTCTGTTTAACCCTAATGG
Found at i:11989932 original size:42 final size:41
Alignment explanation
Indices: 11989842--11989935 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 41
11989832 TGTTAACTAA
* * * *
11989842 TATGAGTTTCTGTTTAACCCTAATGGGTTTCCGTTTAGATC
1 TATGAGCTTCTATTTAACCCTAATGGGTTTCCATTCAGATC
* *
11989883 TATTGAGCTTCTATTTAACCCTTATGGGTTTCCATTCAGCTCC
1 TA-TGAGCTTCTATTTAACCCTAATGGGTTTCCATTCAGAT-C
11989926 TATGAGCTTC
1 TATGAGCTTC
11989936 CGTTCAGCTC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.04
42 40 0.89
43 3 0.07
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (41 bp):
TATGAGCTTCTATTTAACCCTAATGGGTTTCCATTCAGATC
Found at i:11989936 original size:21 final size:21
Alignment explanation
Indices: 11989912--11989962 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
11989902 CCTTATGGGT
*
11989912 TTCCATTCAGCTCCTATGAGC
1 TTCCGTTCAGCTCCTATGAGC
11989933 TTCCGTTCAGCTCCTATGAGC
1 TTCCGTTCAGCTCCTATGAGC
11989954 TTCCGTTCA
1 TTCCGTTCA
11989963 ACCCTTACGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.16, C:0.33, G:0.16, T:0.35
Consensus pattern (21 bp):
TTCCGTTCAGCTCCTATGAGC
Found at i:11991976 original size:24 final size:23
Alignment explanation
Indices: 11991936--11991980 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
11991926 TCACATAAAC
11991936 TCATAATTCAACTCAATTCAATTT
1 TCATAATTCAACTCAA-TCAATTT
*
11991960 TCATATTTCAA-TACAATCAAT
1 TCATAATTCAACT-CAATCAAT
11991981 ATCCAATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (23 bp):
TCATAATTCAACTCAATCAATTT
Found at i:11992431 original size:23 final size:24
Alignment explanation
Indices: 11992387--11992439 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
11992377 AAGTAAATAC
* * *
11992387 ATATATGTATTACAGATGTACA-T
1 ATATATTTATTACACATATACACT
11992410 ATATATTTATTACACATATACACT
1 ATATATTTATTACACATATACACT
11992434 AT-TATT
1 ATATATT
11992440 ACCACACAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (24 bp):
ATATATTTATTACACATATACACT
Found at i:11992483 original size:13 final size:14
Alignment explanation
Indices: 11992467--11992495 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
11992457 ATTTGTTTTC
11992467 TTTATTTA-TTTAT
1 TTTATTTACTTTAT
11992480 TTTATTTACTTTAT
1 TTTATTTACTTTAT
11992494 TT
1 TT
11992496 AAATATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTACTTTAT
Found at i:11992502 original size:22 final size:23
Alignment explanation
Indices: 11992466--11992513 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
11992456 AATTTGTTTT
** *
11992466 CTTTATTTATTTATTT-TATTTA
1 CTTTATTTAAATATTTATATATA
11992488 CTTTATTTAAATATTTATATATA
1 CTTTATTTAAATATTTATATATA
11992511 CTT
1 CTT
11992514 AAACATTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (23 bp):
CTTTATTTAAATATTTATATATA
Found at i:11998676 original size:23 final size:23
Alignment explanation
Indices: 11998641--11998684 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
11998631 CATATATGTG
*
11998641 TTACAAATGTACA-TATGTATTTA
1 TTACAAATATACACTAT-TATTTA
*
11998664 TTACACATATACACTATTATT
1 TTACAAATATACACTATTATT
11998685 ACCACACAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.43
Consensus pattern (23 bp):
TTACAAATATACACTATTATTTA
Found at i:11998724 original size:13 final size:14
Alignment explanation
Indices: 11998708--11998736 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
11998698 CATAATTTGA
11998708 TTTATTTA-TTTAT
1 TTTATTTACTTTAT
11998721 TTTATTTACTTTAT
1 TTTATTTACTTTAT
11998735 TT
1 TT
11998737 AATTAATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTACTTTAT
Found at i:12000496 original size:12 final size:12
Alignment explanation
Indices: 12000468--12000500 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
12000458 ACCCTGCAGT
*
12000468 TAAAATATTTCC
1 TAAAATTTTTCC
12000480 T-AAATTTTTCC
1 TAAAATTTTTCC
12000491 TAAAATTTTT
1 TAAAATTTTT
12000501 AAATGTTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (12 bp):
TAAAATTTTTCC
Found at i:12006206 original size:9 final size:9
Alignment explanation
Indices: 12006194--12006231 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
12006184 TAAAAATTTA
12006194 TAAAAAAAT
1 TAAAAAAAT
12006203 T--AAAAAT
1 TAAAAAAAT
12006210 TAAAAATAAT
1 TAAAAA-AAT
12006220 TAAAAAAAT
1 TAAAAAAAT
12006229 TAA
1 TAA
12006232 TGTGACAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
7 7 0.27
9 10 0.38
10 9 0.35
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:12006220 original size:17 final size:19
Alignment explanation
Indices: 12006184--12006225 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
12006174 TATAAAATCC
12006184 TAAAAATTTATAAAAAAAT
1 TAAAAATTTATAAAAAAAT
*
12006203 TAAAAA-TTA-AAAATAAT
1 TAAAAATTTATAAAAAAAT
12006220 TAAAAA
1 TAAAAA
12006226 AATTAATGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 13 0.59
18 3 0.14
19 6 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
TAAAAATTTATAAAAAAAT
Found at i:12024333 original size:2 final size:2
Alignment explanation
Indices: 12024326--12025272 Score: 610
Period size: 2 Copynumber: 491.0 Consensus size: 2
12024316 GAGGGAGGGC
12024326 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
12024368 GA GA GA GA GA GA GA GA GA GA GA GA GG GC GA GA GA GG GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * * *
12024410 GG GCA -A GA GA GG GA GG GA GG GA GG GA GA GG GA GA GG GA GA GG
1 GA G-A GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
12024452 GA GA AA GA GG GA GA G- GA -A GA GG GA GA GG GA GA AA GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
12024492 GA GA GG GA GA -A G- GA GA G- GA -A GA GG GA GA GT GA GA -A G-
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
12024528 GA GA GA GA GA GG GA GA GA GA GA GA GA GG GA GA GG GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
12024570 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
12024612 GA GG GA GG GA GA GA GA GA GG GA GA GA GA GA G- GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
12024653 GA GA GA GA GA GA GA GA GA GA GA GA GA GA AA GT GA GG GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* *
12024695 GG GA GA GA GA GA GA GA G- GC GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
12024736 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G- GG GA GG GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
12024777 GA GA GA GA GA GA GT GA GG GA GA GA GA GA GA GG GG GA GA G- GC
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * * * *
12024818 GA GA GA GA GA GA GA GA GA -A GA GT GT GT GT GT GT G- GT GT GT
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * * * *
12024858 GT GT G- GT GT GT GT GA GG GA GA GA GA GG GG GA GA G- GCA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G-A GA GA
* * *
12024899 GA GA GA GA AA GT GA G- GG GA GA -A GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
12024939 G- GA GA GA GA GA GA GA G- GG GA GG GG GA GA GA GA GA GA GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
12024979 GA -A CGA GG GA GA GA GA AA GA GG GA -A CGA G- GA GA GA GA AA GA
1 GA GA -GA GA GA GA GA GA GA GA GA GA GA -GA GA GA GA GA GA GA GA
* * * * *
12025020 GG GA GA GA AA GA GA GG GA TG- GA -A GG GC GA -A GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA -GA GA GA GA GA GA GA GA GA GA GA GA
* * * * ** *
12025060 GA GC GA G- GA -A G- GG GA GA GA GG GA GA GCA -A GG GA TT G- GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G-A GA GA GA GA GA GA
* * *
12025098 GA -A GA GA GA GA GA GA GG GG GA GA GA G- GA GA G- GG GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
12025137 GA GA GA GG GA GC GA GG GA GG GA G- GG GA G- GG GA -A GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
12025176 GA GA GG GA GA GG GA GA GA GA GG GA G- GG GA GA GG GA AA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
12025217 GA GA GA GA GA GA GA GA AA GTA -A G- GA -A GA CA GA GA GG GA GA
1 GA GA GA GA GA GA GA GA GA G-A GA GA GA GA GA GA GA GA GA GA GA
* *
12025257 GA GA GG GG GA GA GA GA
1 GA GA GA GA GA GA GA GA
12025273 ANGAACGTAT
Statistics
Matches: 746, Mismatches: 150, Indels: 98
0.75 0.15 0.10
Matches are distributed among these distances:
1 42 0.06
2 698 0.94
3 6 0.01
ACGTcount: A:0.40, C:0.01, G:0.56, T:0.02
Consensus pattern (2 bp):
GA
Found at i:12027127 original size:21 final size:19
Alignment explanation
Indices: 12027091--12027130 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
12027081 AAAGGGTGAG
*
12027091 AATACAAATTTTAGGGAAA
1 AATAAAAATTTTAGGGAAA
12027110 AATAAAAAGTTTTGAGGGAAA
1 AATAAAAA-TTTT-AGGGAAA
12027131 TTCTGTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.53, C:0.03, G:0.20, T:0.25
Consensus pattern (19 bp):
AATAAAAATTTTAGGGAAA
Found at i:12032769 original size:29 final size:30
Alignment explanation
Indices: 12032709--12032774 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
12032699 TGTGAGTAGG
***
12032709 TGCCTTTGTGGCTATCGAAAGTTGTGTGGA
1 TGCCTTTGTGGCTATCGAAAGTCAAGTGGA
*
12032739 TGCCTTTGTGGCTATC-TAAGTCAAGTGGA
1 TGCCTTTGTGGCTATCGAAAGTCAAGTGGA
12032768 TGCCTTT
1 TGCCTTT
12032775 ATTGCTATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 16 0.50
30 16 0.50
ACGTcount: A:0.17, C:0.17, G:0.29, T:0.38
Consensus pattern (30 bp):
TGCCTTTGTGGCTATCGAAAGTCAAGTGGA
Found at i:12038701 original size:24 final size:25
Alignment explanation
Indices: 12038647--12038694 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
12038637 TATATAATAG
*
12038647 GAAGCTCATATGAGCCATATAACGA
1 GAAGCTCATACGAGCCATATAACGA
*
12038672 GAAGCTCATGCGAGCCA-ATAACG
1 GAAGCTCATACGAGCCATATAACG
12038695 GGTAGCTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (25 bp):
GAAGCTCATACGAGCCATATAACGA
Found at i:12038805 original size:26 final size:26
Alignment explanation
Indices: 12038768--12038828 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
12038758 AGCCATATCG
12038768 GAAAGCTC-CAAAGAGCCATTAATCAA
1 GAAA-CTCACAAAGAGCCATTAATCAA
* *
12038794 GAAACTCACAAAGAGCCTTTAATCAG
1 GAAACTCACAAAGAGCCATTAATCAA
*
12038820 GAAGCTCAC
1 GAAACTCAC
12038829 GAAATGCCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 3 0.10
26 28 0.90
ACGTcount: A:0.43, C:0.25, G:0.16, T:0.16
Consensus pattern (26 bp):
GAAACTCACAAAGAGCCATTAATCAA
Found at i:12042953 original size:45 final size:45
Alignment explanation
Indices: 12042903--12043076 Score: 192
Period size: 45 Copynumber: 3.9 Consensus size: 45
12042893 ATACCATAAA
* ** *
12042903 CGAGTAAGACCATGAATGAAATAAATTATGGCATCATGATTTTAAT
1 CGAGTAAGACCATGAATGAAAGATGTTATGGCATCACGATTTT-AT
* * *
12042949 -GAGTAAAACAATGACTGAAAGATGTTATGGCATCACGATTCTT-T
1 CGAGTAAGACCATGAATGAAAGATGTTATGGCATCACGATT-TTAT
* *
12042993 CGAGTAAGACCATGATTGAAAGATGTTATGGCATCACGATTCTAT
1 CGAGTAAGACCATGAATGAAAGATGTTATGGCATCACGATTTTAT
* * *
12043038 CGGGTAAGACCAT-AGCTGAAAGATGCTATGGCATCACGA
1 CGAGTAAGACCATGA-ATGAAAGATGTTATGGCATCACGA
12043077 ATCAAACGAA
Statistics
Matches: 110, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
44 3 0.03
45 105 0.95
46 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (45 bp):
CGAGTAAGACCATGAATGAAAGATGTTATGGCATCACGATTTTAT
Found at i:12043013 original size:90 final size:90
Alignment explanation
Indices: 12042900--12043118 Score: 244
Period size: 90 Copynumber: 2.4 Consensus size: 90
12042890 ACCATACCAT
* * * *
12042900 AAACGAGTAAGACCATGAATGAAATAAATTATGGCATCATGATTTTAAT-GAGTAAAACAAT-GA
1 AAACGAGTAAGACCATGATTGAAAGAAATTATGGCATCACGATTCT-ATCGAGTAAAACAATAG-
* *
12042963 CTGAAAGATGTTATGGCATCACGATTC
64 CTGAAAGATGCTATGGCATCACGAATC
*** ** * * *
12042990 TTTCGAGTAAGACCATGATTGAAAGATGTTATGGCATCACGATTCTATCGGGTAAGACCATAGCT
1 AAACGAGTAAGACCATGATTGAAAGAAATTATGGCATCACGATTCTATCGAGTAAAACAATAGCT
12043055 GAAAGATGCTATGGCATCACGAATC
66 GAAAGATGCTATGGCATCACGAATC
* * * *
12043080 AAACGAATAAGACCATGGTTGAAAGACACTATGGCATCA
1 AAACGAGTAAGACCATGATTGAAAGAAATTATGGCATCA
12043119 AGACAAGAAT
Statistics
Matches: 105, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
89 2 0.02
90 102 0.97
91 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (90 bp):
AAACGAGTAAGACCATGATTGAAAGAAATTATGGCATCACGATTCTATCGAGTAAAACAATAGCT
GAAAGATGCTATGGCATCACGAATC
Found at i:12043091 original size:45 final size:44
Alignment explanation
Indices: 12042929--12043118 Score: 184
Period size: 45 Copynumber: 4.2 Consensus size: 44
12042919 TGAAATAAAT
* * * * *
12042929 TATGGCATCATGATTTTAAT-GAGTAAAACAATGACTGAAAGATGT
1 TATGGCATCACGATTCT-ATCGAGTAAGACCATG-CTGAAAGATGC
* * *
12042974 TATGGCATCACGATTCTTTCGAGTAAGACCATGATTGAAAGATGT
1 TATGGCATCACGATTCTATCGAGTAAGACCATG-CTGAAAGATGC
*
12043019 TATGGCATCACGATTCTATCGGGTAAGACCATAGCTGAAAGATGC
1 TATGGCATCACGATTCTATCGAGTAAGACCAT-GCTGAAAGATGC
* * * * * **
12043064 TATGGCATCACGAATCAAACGAATAAGACCATGGTTGAAAGACAC
1 TATGGCATCACGATTCTATCGAGTAAGACCAT-GCTGAAAGATGC
12043109 TATGGCATCA
1 TATGGCATCA
12043119 AGACAAGAAT
Statistics
Matches: 124, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
44 1 0.01
45 122 0.98
46 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (44 bp):
TATGGCATCACGATTCTATCGAGTAAGACCATGCTGAAAGATGC
Found at i:12045216 original size:42 final size:42
Alignment explanation
Indices: 12045123--12045206 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
12045113 CTGGGACAGT
*
12045123 ACCGTGTGTCTCTATTTCAAATGTTACACAGCTTGAGACACG
1 ACCGTGTGTCCCTATTTCAAATGTTACACAGCTTGAGACACG
**
12045165 ACCGTGTGTCCCTATTTTGAATGTTACACAGCTTGAGACACG
1 ACCGTGTGTCCCTATTTCAAATGTTACACAGCTTGAGACACG
12045207 GGTGTGTGTC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (42 bp):
ACCGTGTGTCCCTATTTCAAATGTTACACAGCTTGAGACACG
Found at i:12050480 original size:46 final size:46
Alignment explanation
Indices: 12050363--12050672 Score: 424
Period size: 46 Copynumber: 6.7 Consensus size: 46
12050353 GCTACCTGAT
12050363 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
12050409 GGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
12050456 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
12050502 ATGAAATGAATAAGACTATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
12050548 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
12050594 GGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
12050641 A-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATAC
12050673 TATGACATCA
Statistics
Matches: 236, Mismatches: 26, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
46 154 0.65
47 82 0.35
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:12050652 original size:93 final size:93
Alignment explanation
Indices: 12050363--12050672 Score: 480
Period size: 93 Copynumber: 3.3 Consensus size: 93
12050353 GCTACCTGAT
12050363 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCA
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCA
* *
12050428 TGGTTGAAAGATACCATGGCAACGTGAT
66 TGGTTGAAAGATACCATGGCAACATGAC
* * *** *
12050456 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATG-AAATGAATAAGACTA
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCA
*
12050520 TGGTTGAAAGATACCATGGCAACCTGAC
66 TGGTTGAAAGATACCATGGCAACATGAC
12050548 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCA
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCA
*
12050613 TGGTTGAAAGATACCATGGAAACATGAC
66 TGGTTGAAAGATACCATGGCAACATGAC
* * *
12050641 A-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATAC
12050673 TATGACATCA
Statistics
Matches: 196, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
92 85 0.43
93 111 0.57
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (93 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCA
TGGTTGAAAGATACCATGGCAACATGAC
Found at i:12052635 original size:53 final size:52
Alignment explanation
Indices: 12052487--12052640 Score: 177
Period size: 52 Copynumber: 2.9 Consensus size: 52
12052477 TGAAGGAAAA
*
12052487 GATGTGATATGTGTTTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
1 GATGTGATATGTGATTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
* * * * **
12052539 AATGTGAT-T-CGAGTTCCCGTATAAAACCATAGCTGGGCTATGGCATCGGTGT
1 GATGTGATATGTGA-TT-CCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
* * *
12052591 GATGTGATAATGTGATTCCGTATAAGACCATATCTAGGATATGGCATCGG
1 GATGTGAT-ATGTGATTCCGTATAAGACCATAACTGGGCTATGGCATCGG
12052641 CATGTTATGT
Statistics
Matches: 84, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
50 1 0.01
51 3 0.04
52 46 0.55
53 29 0.35
54 3 0.04
55 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (52 bp):
GATGTGATATGTGATTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
Found at i:12061080 original size:40 final size:44
Alignment explanation
Indices: 12061014--12061166 Score: 150
Period size: 46 Copynumber: 3.3 Consensus size: 44
12061004 ACAGTTAGAC
*
12061014 CATGTCTGGGACATGGCATCGGCATCGAGACAAGT-GCTAGTGTAAGA
1 CATGTCTGGGACAT-GCATCGGCA-CAAGAC--GTAGCTAGTGTAAGA
* *
12061061 CATGTTTGGGACATGCATCGGCCTCAAGACGTAAGCTAGTGTAAGA
1 CATGTCTGGGACATGCATCGG-CACAAGACGT-AGCTAGTGTAAGA
* * *
12061107 CATGTCTGGGACATGCATCAGCTACGAGATGT-G-TCAGTGTAAGA
1 CATGTCTGGGACATGCATCGGC-ACAAGACGTAGCT-AGTGTAAGA
12061151 CCATGTCTGGGACATG
1 -CATGTCTGGGACATG
12061167 AAGTCAATGT
Statistics
Matches: 92, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 12 0.13
45 16 0.17
46 49 0.53
47 14 0.15
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
CATGTCTGGGACATGCATCGGCACAAGACGTAGCTAGTGTAAGA
Found at i:12061099 original size:46 final size:45
Alignment explanation
Indices: 12061014--12061125 Score: 154
Period size: 46 Copynumber: 2.4 Consensus size: 45
12061004 ACAGTTAGAC
*
12061014 CATGTCTGGGACATGGCATCGGCATCGAGACAAGTGCTAGTGTAAGA
1 CATGTCTGGGACAT-GCATCGGCATCAAGACAAG-GCTAGTGTAAGA
* *
12061061 CATGTTTGGGACATGCATCGGCCTCAAGACGTAA-GCTAGTGTAAGA
1 CATGTCTGGGACATGCATCGGCATCAAGAC--AAGGCTAGTGTAAGA
12061107 CATGTCTGGGACATGCATC
1 CATGTCTGGGACATGCATC
12061126 AGCTACGAGA
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
46 44 0.75
47 13 0.22
48 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (45 bp):
CATGTCTGGGACATGCATCGGCATCAAGACAAGGCTAGTGTAAGA
Found at i:12067725 original size:115 final size:115
Alignment explanation
Indices: 12067520--12067753 Score: 360
Period size: 115 Copynumber: 2.0 Consensus size: 115
12067510 AATTTAGAGT
* * **
12067520 GGTTCGACCCCAATTGCCTACTCCACTACCTTAGCTTTCTACAACCAAGGAATTTCTTAAATTCA
1 GGTTCGACCCCAATTGCCTACTCCACAACCTTAGCTTTCTACAACCAAAGAATTTCCCAAATTCA
*
12067585 CTAATTTGAGAACCTTTGAGAACAATGTTTAACCTTACAAACTCCCTTAA
66 CTAATTTGAGAACCTTTGAGAACAATGTTTAACCTTACAAACTACCTTAA
* * * *
12067635 GGTTCGGCCCCAATTGCCTACTCTACAACCTTAGCTTTCTACAACTAAAGATTTTCCCAAATTCA
1 GGTTCGACCCCAATTGCCTACTCCACAACCTTAGCTTTCTACAACCAAAGAATTTCCCAAATTCA
* * *
12067700 CTAATTTGATAACCTTTGAGGACAATGTTTAACCTTACAAACTACTTTAA
66 CTAATTTGAGAACCTTTGAGAACAATGTTTAACCTTACAAACTACCTTAA
12067750 GGTT
1 GGTT
12067754 TCTACCCAAA
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 107 1.00
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (115 bp):
GGTTCGACCCCAATTGCCTACTCCACAACCTTAGCTTTCTACAACCAAAGAATTTCCCAAATTCA
CTAATTTGAGAACCTTTGAGAACAATGTTTAACCTTACAAACTACCTTAA
Found at i:12067856 original size:41 final size:41
Alignment explanation
Indices: 12067811--12067891 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
12067801 GTAAACAAAG
*
12067811 AAAGAACCCATATAGGATAAAAGTGTTTGCAAATTAAGCTT
1 AAAGAACCCATACAGGATAAAAGTGTTTGCAAATTAAGCTT
* *
12067852 AAAGAATCCATACAGGATCAAAGTGTTTGCAAATTAAGCT
1 AAAGAACCCATACAGGATAAAAGTGTTTGCAAATTAAGCT
12067892 CAATTACAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (41 bp):
AAAGAACCCATACAGGATAAAAGTGTTTGCAAATTAAGCTT
Found at i:12068929 original size:11 final size:11
Alignment explanation
Indices: 12068915--12068951 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
12068905 AAATAACAAC
12068915 AAAACAGTAAA
1 AAAACAGTAAA
* *
12068926 AAAACAATAAG
1 AAAACAGTAAA
12068937 AAAACAGTAAA
1 AAAACAGTAAA
12068948 AAAA
1 AAAA
12068952 TAGTTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.76, C:0.08, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAACAGTAAA
Found at i:12068929 original size:22 final size:22
Alignment explanation
Indices: 12068904--12068953 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
12068894 AAAAACCAAG
12068904 AAAATAACAACAAAACAGTAAA
1 AAAATAACAACAAAACAGTAAA
* * *
12068926 AAAACAATAAGAAAACAGTAAA
1 AAAATAACAACAAAACAGTAAA
12068948 AAAATA
1 AAAATA
12068954 GTTTTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (22 bp):
AAAATAACAACAAAACAGTAAA
Found at i:12068977 original size:5 final size:5
Alignment explanation
Indices: 12068969--12068994 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
12068959 TTTTTTATAT
12068969 TTGGG TTGGG TTGGG TTGGG TTGGG T
1 TTGGG TTGGG TTGGG TTGGG TTGGG T
12068995 CGGGCTTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (5 bp):
TTGGG
Found at i:12077676 original size:23 final size:23
Alignment explanation
Indices: 12077649--12077694 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
12077639 CACCAAAATT
12077649 ACAAGAAAATGGATTAAATTGAC
1 ACAAGAAAATGGATTAAATTGAC
12077672 ACAAGAAAATGGATTAAATTGAC
1 ACAAGAAAATGGATTAAATTGAC
12077695 TTACCAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.17, T:0.22
Consensus pattern (23 bp):
ACAAGAAAATGGATTAAATTGAC
Found at i:12077767 original size:20 final size:18
Alignment explanation
Indices: 12077729--12077772 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
12077719 AAACCCTAAT
12077729 TTTCCC-TTTTCTTTTTC
1 TTTCCCTTTTTCTTTTTC
12077746 TTTCCCTTTTTCCTTCTTTC
1 TTTCCCTTTTT-CTT-TTTC
12077766 TTTCCCT
1 TTTCCCT
12077773 GCTAATCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.25
18 4 0.17
19 3 0.12
20 11 0.46
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTCCCTTTTTCTTTTTC
Found at i:12077794 original size:4 final size:4
Alignment explanation
Indices: 12077785--12077838 Score: 108
Period size: 4 Copynumber: 13.5 Consensus size: 4
12077775 TAATCGTGCC
12077785 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT
12077833 TTCT TT
1 TTCT TT
12077839 TTATGTTTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:12084838 original size:18 final size:18
Alignment explanation
Indices: 12084811--12084873 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
12084801 TCAGAATTCT
*
12084811 TCAATTTATACAACTTAA
1 TCAATATATACAACTTAA
* *
12084829 TCAATATATA-AAGATTCA
1 TCAATATATACAA-CTTAA
* *
12084847 -CTATTTATACAACTTAA
1 TCAATATATACAACTTAA
12084864 TCAATATATA
1 TCAATATATA
12084874 AAGATTCACT
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
17 12 0.36
18 21 0.64
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (18 bp):
TCAATATATACAACTTAA
Found at i:12084860 original size:35 final size:35
Alignment explanation
Indices: 12084814--12084885 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
12084804 GAATTCTTCA
12084814 ATTTATACAACTTAATCAATATATAAAGATTCACT
1 ATTTATACAACTTAATCAATATATAAAGATTCACT
12084849 ATTTATACAACTTAATCAATATATAAAGATTCACT
1 ATTTATACAACTTAATCAATATATAAAGATTCACT
12084884 AT
1 AT
12084886 CTTCCTAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.38
Consensus pattern (35 bp):
ATTTATACAACTTAATCAATATATAAAGATTCACT
Found at i:12103935 original size:21 final size:21
Alignment explanation
Indices: 12103909--12103950 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
12103899 TGATGATTTT
12103909 GAATG-TTGTTCATGGCATGTA
1 GAATGTTTG-TCATGGCATGTA
12103930 GAATGTTTGTCATGGCATGTA
1 GAATGTTTGTCATGGCATGTA
12103951 ATTGAAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.38
Consensus pattern (21 bp):
GAATGTTTGTCATGGCATGTA
Found at i:12121371 original size:12 final size:12
Alignment explanation
Indices: 12121354--12121379 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
12121344 ATCCAGTACA
12121354 ATAGAGTTCTAC
1 ATAGAGTTCTAC
12121366 ATAGAGTTCTAC
1 ATAGAGTTCTAC
12121378 AT
1 AT
12121380 TTACGACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (12 bp):
ATAGAGTTCTAC
Found at i:12129355 original size:26 final size:25
Alignment explanation
Indices: 12129313--12129407 Score: 78
Period size: 26 Copynumber: 4.0 Consensus size: 25
12129303 ATTTTTTTAA
* *
12129313 AATTTTAATAATATTAAAAAATTAT
1 AATTTTTATAATTTTAAAAAATTAT
* *
12129338 AATTTTTATAATTTTTAAATAATTTT
1 AATTTTTATAA-TTTTAAAAAATTAT
12129364 AATGATTTT-TAATTTT-AAAAA--AT
1 AAT--TTTTATAATTTTAAAAAATTAT
12129387 -A-TTTT-TAATTTTAAAAAATTA
1 AATTTTTATAATTTTAAAAAATTA
12129408 ATTAAATATT
Statistics
Matches: 58, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
19 11 0.19
20 5 0.09
22 2 0.03
23 1 0.02
25 14 0.24
26 18 0.31
27 3 0.05
28 4 0.07
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (25 bp):
AATTTTTATAATTTTAAAAAATTAT
Found at i:12129361 original size:20 final size:20
Alignment explanation
Indices: 12129336--12129375 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
12129326 TTAAAAAATT
*
12129336 ATAATTTTTATAATTTTTAA
1 ATAATTTTAATAATTTTTAA
*
12129356 ATAATTTTAATGATTTTTAA
1 ATAATTTTAATAATTTTTAA
12129376 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
ATAATTTTAATAATTTTTAA
Found at i:12129402 original size:18 final size:19
Alignment explanation
Indices: 12129368--12129405 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
12129358 AATTTTAATG
12129368 ATTTTTAATTTTAAAAAAT
1 ATTTTTAATTTTAAAAAAT
12129387 ATTTTTAATTTTAAAAAAT
1 ATTTTTAATTTTAAAAAAT
12129406 TAATTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTTTAATTTTAAAAAAT
Found at i:12129412 original size:18 final size:19
Alignment explanation
Indices: 12129372--12129412 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
12129362 TTAATGATTT
**
12129372 TTAATTTTAAAAAATATTT
1 TTAATTTTAAAAAATATAA
12129391 TTAATTTTAAAAAAT-TAA
1 TTAATTTTAAAAAATATAA
12129409 TTAA
1 TTAA
12129413 ATATTGATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTAATTTTAAAAAATATAA
Found at i:12150891 original size:19 final size:18
Alignment explanation
Indices: 12150855--12150912 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 18
12150845 AATTCTAAAT
* *
12150855 ATTTATAA-AATCACAAA
1 ATTTATAATAATTAAAAA
**
12150872 ATTTATATATTTTTAAAAA
1 ATTTATA-ATAATTAAAAA
12150891 A-TTATAATAATTAAAAA
1 ATTTATAATAATTAAAAA
12150908 ATTTA
1 ATTTA
12150913 AAGAATATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
17 17 0.53
18 9 0.28
19 6 0.19
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTTATAATAATTAAAAA
Found at i:12152907 original size:71 final size:76
Alignment explanation
Indices: 12152831--12152978 Score: 216
Period size: 71 Copynumber: 2.0 Consensus size: 76
12152821 AATTTTTTAG
*
12152831 GGTAAATTGTAAATAAGTATAT-TATTGATGTAAAAATATAATA-GA-ATACAATACAAACAATT
1 GGTAAATTGTAAATAAGTATATATATTGATGTAAAAATATAATACAATATACAATACAAACAATT
12152893 T-TT-TTTTTT
66 TGTTCTTTTTT
* * *
12152902 GGTAAATTGTAAATAAGTATATACTATTGGTGTAAAAATTTATTACAATATACAATACAAACAAT
1 GGTAAATTGTAAATAAGTATATA-TATTGATGTAAAAATATAATACAATATACAATACAAACAAT
12152967 TTGTTCTTTTTT
65 TTGTTCTTTTTT
12152979 TTTATAAACA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
71 22 0.33
73 18 0.27
74 1 0.01
75 18 0.27
76 2 0.03
77 6 0.09
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (76 bp):
GGTAAATTGTAAATAAGTATATATATTGATGTAAAAATATAATACAATATACAATACAAACAATT
TGTTCTTTTTT
Found at i:12156973 original size:93 final size:93
Alignment explanation
Indices: 12156843--12157015 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
12156833 CGCCCATAAG
* ** *
12156843 CGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
12156908 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
12156936 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
12157001 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
12157016 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:12157011 original size:46 final size:46
Alignment explanation
Indices: 12156836--12157014 Score: 211
Period size: 46 Copynumber: 3.9 Consensus size: 46
12156826 TGTAACCCGC
* * *
12156836 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* *
12156882 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCG---CAT
* * *
12156932 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* *
12156975 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGC
12157015 CCAAATATCC
Statistics
Matches: 113, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 70 0.62
47 31 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
Found at i:12157030 original size:46 final size:45
Alignment explanation
Indices: 12156887--12157030 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
12156877 CGCATCCATA
* * *
12156887 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
12156935 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
12156980 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
12157026 AGTGA
1 AGTGA
12157031 CATGTCACTT
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.48
47 30 0.39
48 5 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:12163164 original size:2 final size:2
Alignment explanation
Indices: 12163157--12163181 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12163147 TCATGACATG
12163157 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
12163182 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12166018 original size:386 final size:386
Alignment explanation
Indices: 12165305--12166077 Score: 1519
Period size: 386 Copynumber: 2.0 Consensus size: 386
12165295 GGAAATACTT
*
12165305 GTAATTGGACTTGATGTAAGAGAAGCCTAAAACTCTTCATGGACATGAAAAGGGCGACAACCGGA
1 GTAATTGGACATGATGTAAGAGAAGCCTAAAACTCTTCATGGACATGAAAAGGGCGACAACCGGA
12165370 ATACTAGGGTGTGCCATCCACCCTAATCCTATTCTAAGTAAGATGTTTTTCTATTTGAAATAAAC
66 ATACTAGGGTGTGCCATCCACCCTAATCCTATTCTAAGTAAGATGTTTTTCTATTTGAAATAAAC
12165435 CACTACAACTCAAAAAGGGTTTTATCTTTTCTTCCTAAAAATAGATGGCACTGGGATAACTATTA
131 CACTACAACTCAAAAAGGGTTTTATCTTTTCTTCCTAAAAATAGATGGCACTGGGATAACTATTA
*
12165500 ACACAACTTTGAGAGATTGTGATTTTGCTGAAAAATAGAATAAAAATTATTCTCAACTATTACAT
196 ACACAACTTTGAGAGATTGTGATTTTGCTGAAAAATAGAAAAAAAATTATTCTCAACTATTACAT
12165565 ATATTTTTTCCGGAATAACAACTCAATCAGTTTCTATTAAGAAGAGATAATTTCATTTTCATCCC
261 ATATTTTTTCCGGAATAACAACTCAATCAGTTTCTATTAAGAAGAGATAATTTCATTTTCATCCC
12165630 AAAAGAAGAGAAACTATTTTCTAGTTCTGTGTTTTGATTCAATTAGTTTGATCCTACACTC
326 AAAAGAAGAGAAACTATTTTCTAGTTCTGTGTTTTGATTCAATTAGTTTGATCCTACACTC
12165691 GTAATTGGACATGATGTAAGAGAAGCCTAAAACTCTTCATGGACATGAAAAGGGCGACAACCGGA
1 GTAATTGGACATGATGTAAGAGAAGCCTAAAACTCTTCATGGACATGAAAAGGGCGACAACCGGA
12165756 ATACTAGGGTGTGCCATCCACCCTAATCCTATTCTAAGTAAGATGTTTTTCTATTTGAAATAAAC
66 ATACTAGGGTGTGCCATCCACCCTAATCCTATTCTAAGTAAGATGTTTTTCTATTTGAAATAAAC
12165821 CACTACAACTCAAAAAGGGTTTTATCTTTTCTTCCTAAAAATAGATGGCACTGGGATAACTATTA
131 CACTACAACTCAAAAAGGGTTTTATCTTTTCTTCCTAAAAATAGATGGCACTGGGATAACTATTA
12165886 ACACAACTTTGAGAGATTGTGATTTTGCTGAAAAATAGAAAAAAAATTATTCTCAACTATTACAT
196 ACACAACTTTGAGAGATTGTGATTTTGCTGAAAAATAGAAAAAAAATTATTCTCAACTATTACAT
*
12165951 ATATTTTTTCCGGAATAACAACTCAATCAGTTTCTATTAAGAAGAGATAATTTCGTTTTCATCCC
261 ATATTTTTTCCGGAATAACAACTCAATCAGTTTCTATTAAGAAGAGATAATTTCATTTTCATCCC
12166016 AAAAGAAGAGAAACTATTTTCTAGTTCTGTGTTTTGATTCAATTAGTTTGATCCTACACTC
326 AAAAGAAGAGAAACTATTTTCTAGTTCTGTGTTTTGATTCAATTAGTTTGATCCTACACTC
12166077 G
1 G
12166078 AAGCAGTTCG
Statistics
Matches: 384, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
386 384 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (386 bp):
GTAATTGGACATGATGTAAGAGAAGCCTAAAACTCTTCATGGACATGAAAAGGGCGACAACCGGA
ATACTAGGGTGTGCCATCCACCCTAATCCTATTCTAAGTAAGATGTTTTTCTATTTGAAATAAAC
CACTACAACTCAAAAAGGGTTTTATCTTTTCTTCCTAAAAATAGATGGCACTGGGATAACTATTA
ACACAACTTTGAGAGATTGTGATTTTGCTGAAAAATAGAAAAAAAATTATTCTCAACTATTACAT
ATATTTTTTCCGGAATAACAACTCAATCAGTTTCTATTAAGAAGAGATAATTTCATTTTCATCCC
AAAAGAAGAGAAACTATTTTCTAGTTCTGTGTTTTGATTCAATTAGTTTGATCCTACACTC
Found at i:12167047 original size:30 final size:31
Alignment explanation
Indices: 12167007--12167065 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
12166997 CAGTTATAGC
*
12167007 AATTTGTGTGTTTTCTTGAATTGTTGTAGTA
1 AATTTGTGTGTTTTCTTGAATGGTTGTAGTA
*
12167038 AATTT-TGTGTTTTGTTGAATGGTTGTAG
1 AATTTGTGTGTTTTCTTGAATGGTTGTAG
12167066 CAGTTAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.19, C:0.02, G:0.25, T:0.54
Consensus pattern (31 bp):
AATTTGTGTGTTTTCTTGAATGGTTGTAGTA
Found at i:12168347 original size:39 final size:39
Alignment explanation
Indices: 12168296--12168370 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
12168286 ATGAAGCCTG
*
12168296 CTAGGCACTAAGCCTGATTAACACT-GGCACATAGCCCTA
1 CTAGGCACTAAGCCTGAATAACA-TAGGCACATAGCCCTA
*
12168335 CTAGGCATTAAGCCTGAATAACATAGGCACATAGCC
1 CTAGGCACTAAGCCTGAATAACATAGGCACATAGCC
12168371 TGAATAACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (39 bp):
CTAGGCACTAAGCCTGAATAACATAGGCACATAGCCCTA
Found at i:12168370 original size:22 final size:22
Alignment explanation
Indices: 12168345--12168391 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
12168335 CTAGGCATTA
* *
12168345 AGCCTGAATAACATAGGCACAT
1 AGCCTGAATAACACAAGCACAT
12168367 AGCCTGAATAACACAAGCACAT
1 AGCCTGAATAACACAAGCACAT
12168389 AGC
1 AGC
12168392 AGGCACTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.26, G:0.17, T:0.15
Consensus pattern (22 bp):
AGCCTGAATAACACAAGCACAT
Found at i:12173041 original size:24 final size:24
Alignment explanation
Indices: 12173009--12173058 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
12172999 ATACCAAGAC
* *
12173009 AAGTGTACCATTTACAACAAAATT
1 AAGTATACCATCTACAACAAAATT
12173033 AAGTATACCATCTACAACAAAATT
1 AAGTATACCATCTACAACAAAATT
12173057 AA
1 AA
12173059 TCTTGTTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.18, G:0.06, T:0.26
Consensus pattern (24 bp):
AAGTATACCATCTACAACAAAATT
Found at i:12174073 original size:88 final size:87
Alignment explanation
Indices: 12173980--12174140 Score: 216
Period size: 87 Copynumber: 1.8 Consensus size: 87
12173970 AACCTCAAAC
* * *
12173980 ATACCA-TTCTAATATTTAATTAATTTTTTTATACTAATTAAGTAAGAAGCATACAAATAAATAA
1 ATACCATTTC-AATATTT-ATTAAGTTTTTTATACTAATTAAATAACAAGCATACAAATAAATAA
12174044 CAATACAAAAAGAAAATCTAATAT
64 CAATACAAAAAGAAAATCTAATAT
* * * * *
12174068 ATACCATTTCAGTATTTATTTAGTTTTTTATACTAATTAAATGACAAGCATACAAATAAGTAATA
1 ATACCATTTCAATATTTATTAAGTTTTTTATACTAATTAAATAACAAGCATACAAATAAATAACA
*
12174133 CTACAAAA
66 ATACAAAA
12174141 CGAATTAAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
87 48 0.76
88 12 0.19
89 3 0.05
ACGTcount: A:0.48, C:0.11, G:0.06, T:0.35
Consensus pattern (87 bp):
ATACCATTTCAATATTTATTAAGTTTTTTATACTAATTAAATAACAAGCATACAAATAAATAACA
ATACAAAAAGAAAATCTAATAT
Found at i:12175020 original size:48 final size:48
Alignment explanation
Indices: 12174959--12175078 Score: 240
Period size: 48 Copynumber: 2.5 Consensus size: 48
12174949 ATTACAAACA
12174959 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
12175007 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
1 TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
12175055 TCAATTATTTACCCTATTAACAAA
1 TCAATTATTTACCCTATTAACAAA
12175079 GCTCGGACTA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (48 bp):
TCAATTATTTACCCTATTAACAAATAATCTCATTTTCAAAATTTCATT
Found at i:12177514 original size:5 final size:5
Alignment explanation
Indices: 12177472--12177496 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
12177462 TTAAATATTT
12177472 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
12177497 TTTTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:12180508 original size:40 final size:40
Alignment explanation
Indices: 12180464--12180554 Score: 130
Period size: 40 Copynumber: 2.3 Consensus size: 40
12180454 TAAAAAGTAT
* *
12180464 TTATATTAAAAACAC-TATCATAAATATAATAAATGTTTTA
1 TTATATTAAAAAAACATA-CATAAATATAATAAATATTTTA
*
12180504 TTATATTAAAAAAACATAGATAAATATAATAAATATTTTA
1 TTATATTAAAAAAACATACATAAATATAATAAATATTTTA
*
12180544 TTGTATTAAAA
1 TTATATTAAAA
12180555 TTTTGTATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 44 0.96
41 2 0.04
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (40 bp):
TTATATTAAAAAAACATACATAAATATAATAAATATTTTA
Found at i:12180678 original size:26 final size:25
Alignment explanation
Indices: 12180648--12180718 Score: 65
Period size: 29 Copynumber: 2.7 Consensus size: 25
12180638 TAAATTAATG
12180648 ATTTAATATAAATATATATAATTATT
1 ATTTAATATAAATATATATAATT-TT
12180674 ATTTAACATATATAAT-TAATATAATTTT
1 ATTT-A-ATATA-AATAT-ATATAATTTT
*
12180702 TTTATAATAT-AATATAT
1 ATT-TAATATAAATATAT
12180719 TTGCGCTGAG
Statistics
Matches: 38, Mismatches: 1, Indels: 13
0.73 0.02 0.25
Matches are distributed among these distances:
25 5 0.13
26 5 0.13
27 5 0.13
28 11 0.29
29 12 0.32
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTTAATATAAATATATATAATTTT
Found at i:12184658 original size:3 final size:3
Alignment explanation
Indices: 12184650--12184697 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
12184640 TACTGCATTG
12184650 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
12184698 TTTGGCTTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:12185214 original size:40 final size:40
Alignment explanation
Indices: 12185148--12185229 Score: 105
Period size: 40 Copynumber: 2.0 Consensus size: 40
12185138 TTTAATTAAT
*
12185148 TTTTTAAAATTTAAAAATTCAAAAAAT-ATATAAAAAATTA
1 TTTTTAAAAATTAAAAATTCAAAAAATCAT-TAAAAAATTA
* *
12185188 TTTTTAAAAATTAAAAA-TCATTAAAATCATTAAAAATTTA
1 TTTTTAAAAATTAAAAATTCA-AAAAATCATTAAAAAATTA
12185228 TT
1 TT
12185230 AAATATTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
39 3 0.08
40 32 0.86
41 2 0.05
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (40 bp):
TTTTTAAAAATTAAAAATTCAAAAAATCATTAAAAAATTA
Found at i:12185243 original size:19 final size:18
Alignment explanation
Indices: 12185187--12185241 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
12185177 ATAAAAAATT
*
12185187 ATTT-TTAAAAATTAAAA
1 ATTTATTAAATATTAAAA
*
12185204 A-TCATTAAAATCATTAAAA
1 ATTTATT-AAAT-ATTAAAA
12185223 ATTTATTAAATATTAAAA
1 ATTTATTAAATATTAAAA
12185241 A
1 A
12185242 ATAATATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
16 1 0.03
17 3 0.10
18 11 0.35
19 12 0.39
20 4 0.13
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTTATTAAATATTAAAA
Found at i:12185249 original size:20 final size:19
Alignment explanation
Indices: 12185191--12185249 Score: 50
Period size: 19 Copynumber: 3.1 Consensus size: 19
12185181 AAAATTATTT
* *
12185191 TTAAAAATTAAAAATCAT-
1 TTAAATATTAAAAATAATA
* *
12185209 TAAAATCATTAAAAAT-TTA
1 TTAAAT-ATTAAAAATAATA
12185228 TTAAATATTAAAAAATAATA
1 TTAAATATT-AAAAATAATA
12185248 TT
1 TT
12185250 TTTAAAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 8 0.25
19 20 0.62
20 4 0.12
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.37
Consensus pattern (19 bp):
TTAAATATTAAAAATAATA
Found at i:12185931 original size:31 final size:31
Alignment explanation
Indices: 12185864--12185952 Score: 85
Period size: 31 Copynumber: 3.0 Consensus size: 31
12185854 AACTATGAAG
* *
12185864 TTTTTTACTCAATTTGGTACTTGAATTTATC
1 TTTTTTTCTCAATTTGGTACTTAAATTTATC
* * **
12185895 ATTTTTTCTTAATTTGGTACTTAAATTT-GG
1 TTTTTTTCTCAATTTGGTACTTAAATTTATC
* *
12185925 TTTTTTT-T-AATTTAGTACCTAAATTTAT
1 TTTTTTTCTCAATTTGGTACTTAAATTTAT
12185953 TAAATGTTAT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
28 16 0.34
29 1 0.02
30 6 0.13
31 24 0.51
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.57
Consensus pattern (31 bp):
TTTTTTTCTCAATTTGGTACTTAAATTTATC
Found at i:12185937 original size:28 final size:29
Alignment explanation
Indices: 12185896--12185950 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
12185886 GAATTTATCA
* *
12185896 TTTTTTCTTAATTTGGTACTTAAATTTGG
1 TTTTTTCTTAATTTAGTACCTAAATTTGG
12185925 TTTTTT-TTAATTTAGTACCTAAATTT
1 TTTTTTCTTAATTTAGTACCTAAATTT
12185951 ATTAAATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.24, C:0.07, G:0.09, T:0.60
Consensus pattern (29 bp):
TTTTTTCTTAATTTAGTACCTAAATTTGG
Found at i:12186393 original size:60 final size:57
Alignment explanation
Indices: 12186323--12186493 Score: 184
Period size: 60 Copynumber: 2.9 Consensus size: 57
12186313 AAATCGAATA
* *
12186323 AAAAAAAGTTTAGGTATCAAATTAGGAAAAAGAGTCAAATTCAGGTACCAAATTGGACTC
1 AAAAAAAGTTTAAGTA-CAAATTAGGAAAAAGAGTCAAATTCAGGTACCAAATTAGA--C
** * **
12186383 CCAAAAAGTTTAAGTACCAAGTTAGGAAAAA-ATGTCAAATTTGGGTACCAAATTAGAC
1 AAAAAAAGTTTAAGTA-CAAATTAGGAAAAAGA-GTCAAATTCAGGTACCAAATTAGAC
* *
12186441 AAAAAAAGTTTAAGTACTAAATTAGAAAAAAGTA-TCAAGTTCAGGTACCAAAT
1 AAAAAAAGTTTAAGTAC-AAATTAGGAAAAAG-AGTCAAATTCAGGTACCAAAT
12186494 GTTATATTAA
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
57 1 0.01
58 42 0.46
59 1 0.01
60 48 0.52
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (57 bp):
AAAAAAAGTTTAAGTACAAATTAGGAAAAAGAGTCAAATTCAGGTACCAAATTAGAC
Found at i:12186488 original size:58 final size:59
Alignment explanation
Indices: 12186323--12186493 Score: 179
Period size: 58 Copynumber: 2.9 Consensus size: 59
12186313 AAATCGAATA
* * *
12186323 AAAAAAAGTTTAGGTA-TCAAATTAGGAAAAAG-AGTCAAATTCAGGTACCAAATTGGACTC
1 AAAAAAAGTTTAAGTACT-AAATTAGAAAAAAGTA-TCAAATTCAGGTACCAAATTAGAC-C
** * * * **
12186383 CCAAAAAGTTTAAGTACCAAGTTAGGAAAAAA-TGTCAAATTTGGGTACCAAATTAGA-C
1 AAAAAAAGTTTAAGTACTAAATTA-GAAAAAAGTATCAAATTCAGGTACCAAATTAGACC
*
12186441 AAAAAAAGTTTAAGTACTAAATTAGAAAAAAGTATCAAGTTCAGGTACCAAAT
1 AAAAAAAGTTTAAGTACTAAATTAGAAAAAAGTATCAAATTCAGGTACCAAAT
12186494 GTTATATTAA
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
57 7 0.08
58 38 0.43
60 38 0.43
61 6 0.07
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (59 bp):
AAAAAAAGTTTAAGTACTAAATTAGAAAAAAGTATCAAATTCAGGTACCAAATTAGACC
Found at i:12187136 original size:22 final size:23
Alignment explanation
Indices: 12187110--12187155 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
12187100 GACTTTGTTA
12187110 TGGGA-TGTTTTATTTTTGCTAT
1 TGGGATTGTTTTATTTTTGCTAT
* *
12187132 TGGGATTGTTTTCTTTTTGTTAT
1 TGGGATTGTTTTATTTTTGCTAT
12187155 T
1 T
12187156 TCTACTAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.11, C:0.04, G:0.22, T:0.63
Consensus pattern (23 bp):
TGGGATTGTTTTATTTTTGCTAT
Found at i:12189419 original size:49 final size:47
Alignment explanation
Indices: 12189300--12189614 Score: 184
Period size: 46 Copynumber: 6.7 Consensus size: 47
12189290 AGGATATAAT
* *
12189300 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
* * * *
12189347 GTCGATGCCATGTCCCAAACATGGTCTTACACTTACT-ATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AA
* * * * * * **
12189396 GCCGACGCCATGTCCTAGACATGGTCTTACACTGGCACCTCTATACGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAAT-CAA
* * * **
12189444 GCCGATGCCATGTCCCAGACATTGTCTTACACTGAAAT-ATC-TTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG-ACTCATCAATCAA
* * * * * *
12189490 GCCGATG-CATATACCAAACAT-GTCTTACCCTGGCTTACATC--TCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-T-CATCAATC-AA
* * **
12189536 GCCGATG-CATCTCCCAAACAT-GTCTTACACT-AGCTC-TCGTTTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATC-AATCAA
*
12189581 TGCTGATGCCATGTCCCAGACATGGTCTTACACT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT
12189615 AGCTCTTATA
Statistics
Matches: 206, Mismatches: 45, Indels: 33
0.73 0.16 0.12
Matches are distributed among these distances:
43 2 0.01
44 12 0.06
45 14 0.07
46 50 0.24
47 46 0.22
48 48 0.23
49 32 0.16
50 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
Found at i:12189614 original size:48 final size:47
Alignment explanation
Indices: 12189297--12189651 Score: 214
Period size: 48 Copynumber: 7.6 Consensus size: 47
12189287 CATAGGATAT
* *
12189297 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCTATC
* * * *
12189345 AA-GTCGATGCCATGTCCCAAACATGGTCTTACACTTA-CTATCGAAATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACAC-TAGCTCTC--TATC
* * * * * *
12189393 GAGGCCGACGCCATGTCCTAGACATGGTCTTACACTGGCACCTCTAT-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCTCTATC
* * ** * *
12189440 ACGTGCCGATGCCATGTCCCAGACATTGTCTTACACTGAAATATCT-TG
1 A-ATGCCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCTATC
* * * * * * *
12189488 TA-GCCGATG-CATATACCAAACAT-GTCTTACCCTGGCT-TACATCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-C-TATC
* * * * *
12189533 GAGGCCGATG-CATCTCCCAAACAT-GTCTTACACTAGCTCTCGTTTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TATC
*
12189579 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-TAT-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATC
*
12189624 AATGTGGCCAATG-CATGTCCCAGACATG
1 AA--T-GCCGATGCCATGTCCCAGACATG
12189652 TTTTACTGTA
Statistics
Matches: 238, Mismatches: 50, Indels: 39
0.73 0.15 0.12
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 10 0.04
45 15 0.06
46 53 0.22
47 62 0.26
48 64 0.27
49 29 0.12
50 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATC
Found at i:12191956 original size:46 final size:46
Alignment explanation
Indices: 12191897--12192067 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
12191887 ACATCTCGTA
* *
12191897 GCCGATGCATGTCCCATACATGTCTTACATTGGCT-TACATTTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATTTCGAG
* * * * *
12191943 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTTCGAG
*
12191989 GCAGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTAT--ATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATT-TCGA-G
12192037 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
12192068 AGCACACAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
46 53 0.50
47 29 0.27
48 23 0.22
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTTCGAG
Found at i:12192017 original size:94 final size:92
Alignment explanation
Indices: 12191900--12192070 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 92
12191890 TCTCGTAGCC
* * *
12191900 GATGCATGTCCCATACATGTCTTACATTGGCT-TACATT-TCGA-GGCCGATGCATGTCCTAGAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATTAT--ATGGCCGATGCATGTCCCAGAC
12191962 ATGTCTTACACTAGCTCTCGTCTCGATGCA
63 ATGTCTTACACTAGCTCTCGTCTCGATGCA
12191992 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTATATGGCCGATGCATGTCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATTATATGGCCGATGCATGTCCCAGACA
12192057 TGTCTTACACTAGC
64 TGTCTTACACTAGC
12192071 ACACAAATAA
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 51 0.72
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTATATGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCTCTCGTCTCGATGCA
Found at i:12192058 original size:140 final size:140
Alignment explanation
Indices: 12191802--12192065 Score: 338
Period size: 140 Copynumber: 1.9 Consensus size: 140
12191792 AGGGTATAAT
* * *
12191802 GCCGATACATGTCCTCGACATGGTCTTACACTAGCTCTCACATATCCGTGCTGATTCCATGTCCC
1 GCCGATACATGTCCTAGACATGGTCTTACACTAGCTCT-ACATATCCGTGCAGATGCCATGTCCC
* *
12191867 AGACATGGTCTAAAACTGACACATCTCGTAGCCGATGCATGTCCCATACATGTCTTACATTGGCT
65 AGACATGGTCTAAAACTGACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACATTGGCT
12191932 TACATTTCGAG
130 TACATTTCGAG
* * *
12191943 GCCGATGCATGTCCTAGACAT-GTCTTACACTAGCTCT-CGTCT-CGATGCAGATGCCATGTCCC
1 GCCGATACATGTCCTAGACATGGTCTTACACTAGCTCTACATATCCG-TGCAGATGCCATGTCCC
* * * * *
12192005 AGACATGGTCTTACACTGGCTC-TCATTATATGGCCGATGCATGTCCCAGACATGTCTTACA
65 AGACATGGTCTAAAACTGACACATC-TCATA--GCCGATGCATGTCCCAGACATGTCTTACA
12192066 CTAGCACACA
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
137 4 0.04
138 39 0.37
140 44 0.42
141 19 0.18
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (140 bp):
GCCGATACATGTCCTAGACATGGTCTTACACTAGCTCTACATATCCGTGCAGATGCCATGTCCCA
GACATGGTCTAAAACTGACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACATTGGCTT
ACATTTCGAG
Found at i:12200312 original size:11 final size:11
Alignment explanation
Indices: 12200277--12200325 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
12200267 CAATTCACTT
12200277 TTCAATTTCAAA
1 TTCAA-TTCAAA
* *
12200289 TTCACTTTAAA
1 TTCAATTCAAA
12200300 TTCAA-TCACAA
1 TTCAATTCA-AA
12200311 TTCAATTCAAA
1 TTCAATTCAAA
12200322 TTCA
1 TTCA
12200326 CTTTTCCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 2 0.06
11 22 0.71
12 7 0.23
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (11 bp):
TTCAATTCAAA
Found at i:12201371 original size:22 final size:20
Alignment explanation
Indices: 12201343--12201389 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
12201333 AATTTAATTT
*
12201343 TTTATAAATTAATATAATATA
1 TTTATAAACTAA-ATAATATA
12201364 CTTTAT-AACTAAATAATATA
1 -TTTATAAACTAAATAATATA
12201384 TTTATA
1 TTTATA
12201390 TAGTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 5 0.22
20 8 0.35
21 5 0.22
22 5 0.22
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTATAAACTAAATAATATA
Found at i:12207397 original size:144 final size:142
Alignment explanation
Indices: 12207111--12207567 Score: 568
Period size: 144 Copynumber: 3.2 Consensus size: 142
12207101 TATGTGTGCT
* * * * * * **
12207111 AGTGTAAGACCATGTCTGGGACAT-GTATCGGCCACGATATGAGAGCCAGTGTAACACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGCGAGAGCCAGTGTAACACCATGTCT
** * * *
12207175 GAAACATGGCATCGACGTTGATATGTGCGCTAGTGTATGACCATGTCTGGGACATGGCATCAGCC
66 GGGACATGGCATCGA--TTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT
12207240 ACATTATGAGAGCC
129 ACATTATGAGAGCC
* * * *
12207254 AATGTAATACCATGTTTGGAACATGACATCGGCAATGTTGCGAGAGCCAGTGTAATACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGCGAGAGCCAGTGTAACACCATGTCT
*
12207319 GGGACATGGCATCGGTATTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCT
66 GGGACATGGCATC-G-ATTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT
12207384 ACATTATGAGAGCC
129 ACATTATGAGAGCC
* * * * * *
12207398 AGCGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTGTGAGAGCTAGTGTAAGACCATGTCA
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGCGAGAGCCAGTGTAACACCATGTCT
*
12207463 GGGACATGG---C-ATTGATATGTGCGCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCCT-
66 GGGACATGGCATCGATTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTA
* *
12207523 CGA-CATGTGAGCC
130 C-ATTATGAGAGCC
12207536 AGTGTAAGACCATGTTTGGAACATGGCATCGG
1 AGTGTAAGACCATGTTTGGAACATGGCATCGG
12207568 TATTTCAGCC
Statistics
Matches: 276, Mismatches: 33, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
138 84 0.30
139 3 0.01
141 1 0.00
143 20 0.07
144 166 0.60
145 1 0.00
146 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (142 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGCGAGAGCCAGTGTAACACCATGTCT
GGGACATGGCATCGATTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC
ATTATGAGAGCC
Found at i:12207567 original size:48 final size:48
Alignment explanation
Indices: 12207111--12207567 Score: 337
Period size: 48 Copynumber: 9.7 Consensus size: 48
12207101 TATGTGTGCT
* * *
12207111 AGTGTAAGACCATGTCTGGGACAT-GTATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATATGAGAGCC
* * * * * * * *
12207158 AGTGTAACACCATGTCTGAAACATGGCATCGACGTTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATATGAGAGCC
* * * *
12207206 AGTGTATGACCATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGA-TATGAGAGCC
* * * * * * **
12207254 AATGTAATACCATGTTTGGAACATGACATCGGCAAT-GTTGCGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGC-CTCGATATGAGAGCC
* * ** * * * *
12207302 AGTGTAATACCATGTCTGGGACATGGCATCGGTATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATATGAGAGCC
* *
12207350 AGTGTAAGACCATGTCTGGGACATGGCATTGG-CTAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCT-CGA-TATGAGAGCC
* * * * * * *
12207398 AGCGTAAGACCATGTTTGGAACATGGCATCAGCAAT-GTTGTGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGC-CTCGATATGAGAGCC
* * * * *
12207446 AGTGTAAGACCATGTCAGGGACATGGCAT-----T-GATATGTGCGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATATGAGAGCC
* *
12207488 AGTGTAAGACCATGTCT-GAGACATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGA-ACATGGCATCGGCCTCGATATGAGAGCC
*
12207536 AGTGTAAGACCATGTTTGGAACATGGCATCGG
1 AGTGTAAGACCATGTCTGGAACATGGCATCGG
12207568 TATTTCAGCC
Statistics
Matches: 316, Mismatches: 76, Indels: 35
0.74 0.18 0.08
Matches are distributed among these distances:
41 1 0.00
42 34 0.11
47 27 0.09
48 251 0.79
49 2 0.01
50 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATATGAGAGCC
Found at i:12208252 original size:21 final size:21
Alignment explanation
Indices: 12208211--12208252 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
12208201 ATTTTCTTAA
* *
12208211 TCGAGTCGAGTGAGATGGAAT
1 TCGAGTCGAATGAGATCGAAT
12208232 TCGAGTCGAATCGA-ATCGAAT
1 TCGAGTCGAAT-GAGATCGAAT
12208253 ATATTTGTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (21 bp):
TCGAGTCGAATGAGATCGAAT
Found at i:12209258 original size:18 final size:18
Alignment explanation
Indices: 12209232--12209266 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12209222 AATCAAGTTG
* *
12209232 ACTCGAATAACTTGATTA
1 ACTCAAATAACTCGATTA
12209250 ACTCAAATAACTCGATT
1 ACTCAAATAACTCGATT
12209267 TGTTTAACTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:12216471 original size:11 final size:11
Alignment explanation
Indices: 12216436--12216484 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
12216426 CAAATCACTT
12216436 TTCAATTTCAAA
1 TTCAA-TTCAAA
* *
12216448 TTCACTTTAAA
1 TTCAATTCAAA
12216459 TTCAA-TCACAA
1 TTCAATTCA-AA
12216470 TTCAATTCAAA
1 TTCAATTCAAA
12216481 TTCA
1 TTCA
12216485 CTTTTCCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 2 0.06
11 22 0.71
12 7 0.23
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (11 bp):
TTCAATTCAAA
Found at i:12219286 original size:43 final size:42
Alignment explanation
Indices: 12219188--12219308 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
12219178 TAGAATTACT
* * *
12219188 GAGATTATGTGTAAGACCATATCTGGGATACGGGATCGATAT
1 GAGATTATGTGTAAGACCATATCTGGGATATGGCATCGATAC
* * *
12219230 GAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC
1 GAGA-TTATGTGTAAGACCATATCTGGGATA-TGGCATCGATAC
* *
12219273 GAGATTATATGTAAGATCATATCTGGGATATGGCAT
1 GAGATTATGTGTAAGACCATATCTGGGATATGGCAT
12219309 TGGTACGATA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (42 bp):
GAGATTATGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:12220030 original size:2 final size:2
Alignment explanation
Indices: 12220023--12220047 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12220013 GTTTAAAGTG
12220023 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
12220048 TCCCATGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12230213 original size:25 final size:26
Alignment explanation
Indices: 12230165--12230214 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
12230155 ACCAACATTC
*
12230165 GCCACCGCCATGTACTGCCGTCGTCT
1 GCCACCGCCATGTACTGCCATCGTCT
12230191 GCCACCGCC-TGGT-CTGCCATCGTC
1 GCCACCGCCAT-GTACTGCCATCGTC
12230215 GTACCACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.10, C:0.44, G:0.24, T:0.22
Consensus pattern (26 bp):
GCCACCGCCATGTACTGCCATCGTCT
Found at i:12230221 original size:26 final size:26
Alignment explanation
Indices: 12230166--12230222 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
12230156 CCAACATTCG
* *
12230166 CCACCGCCATGTACTGCCGTCGTCTG
1 CCACCGCCATGTACTGCCATCGTCTA
12230192 CCACCGCC-TGGT-CTGCCATCGTCGTA
1 CCACCGCCAT-GTACTGCCATCGTC-TA
12230218 CCACC
1 CCACC
12230223 AGAACTGACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 11 0.41
26 16 0.59
ACGTcount: A:0.12, C:0.46, G:0.21, T:0.21
Consensus pattern (26 bp):
CCACCGCCATGTACTGCCATCGTCTA
Found at i:12237275 original size:26 final size:26
Alignment explanation
Indices: 12237244--12237351 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
12237234 TGAAATGCCC
*
12237244 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
12237270 ATCATGGAACACTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
12237296 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
12237322 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
12237348 ATCA
1 ATCA
12237352 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:12238416 original size:13 final size:13
Alignment explanation
Indices: 12238400--12238431 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
12238390 TTATTTTATT
12238400 TTATTTAGTTTTA
1 TTATTTAGTTTTA
*
12238413 TTATTTATTTTTA
1 TTATTTAGTTTTA
12238426 TTATTT
1 TTATTT
12238432 TAGGATTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (13 bp):
TTATTTAGTTTTA
Found at i:12254491 original size:52 final size:52
Alignment explanation
Indices: 12254430--12254533 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
12254420 AGCAAATATC
*
12254430 GCTCCCAACTACTATTGAACTCAATAACATAACTACGCAGCATATTCTCTAA
1 GCTCCCAACTACTATTGAACTCAATAACACAACTACGCAGCATATTCTCTAA
12254482 GCTCCCAACTACTATTGAACTCAATAACACAACTACGCAGCATATTCTCTAA
1 GCTCCCAACTACTATTGAACTCAATAACACAACTACGCAGCATATTCTCTAA
12254534 CACTTGAATT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.37, C:0.30, G:0.08, T:0.26
Consensus pattern (52 bp):
GCTCCCAACTACTATTGAACTCAATAACACAACTACGCAGCATATTCTCTAA
Found at i:12258174 original size:28 final size:28
Alignment explanation
Indices: 12258106--12258197 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
12258096 GATATGATAT
*
12258106 TGTGCTAAGTGAAATAAGACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
12258133 --T-CTAAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
12258158 TGTGCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
12258186 TGTGCTAAGTGA
1 TGTGCTAAGTGA
12258198 GAAATTTCCT
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
24 20 0.35
25 2 0.04
27 1 0.02
28 34 0.60
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:12258269 original size:51 final size:51
Alignment explanation
Indices: 12258214--12258368 Score: 249
Period size: 51 Copynumber: 3.0 Consensus size: 51
12258204 TCCTGGTTGA
*
12258214 ACTTTGTGAATATAATAGCTTTTGACACAAGTGTGATACTATGTGAAGGCC
1 ACTTTGTGAATATAATAGCTTTTGACACAAGTGTGGTACTATGTGAAGGCC
* *
12258265 ACTTTGTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCT
1 ACTTTGTGAATATAATAGCTTTTGACACAAGTGTGGTACTATGTGAAGGCC
* *
12258316 ACTTTGTGAATAAAATAGC-TTTGGCTACAAGTGTGGTACTATGTGAAGGCC
1 ACTTTGTGAATATAATAGCTTTTGAC-ACAAGTGTGGTACTATGTGAAGGCC
12258367 AC
1 AC
12258369 CGTGTATCAG
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 4 0.04
51 92 0.96
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (51 bp):
ACTTTGTGAATATAATAGCTTTTGACACAAGTGTGGTACTATGTGAAGGCC
Found at i:12261544 original size:201 final size:201
Alignment explanation
Indices: 12261181--12261581 Score: 653
Period size: 201 Copynumber: 2.0 Consensus size: 201
12261171 ACGCCAAATG
* *
12261181 ACGTTCGAGCAAAAACTCACAGTTAACAGGTGCAAGATTGATAGGTGTAGAAGCAGGGTTAGCAC
1 ACGTTCAAGCAAAAACTCACAGTTAACAGGTGCAAGATTGACAGGTGTAGAAGCAGGGTTAGCAC
* * *
12261246 TAGTAATCTGCTGAAACGCTCTAATCATAGCTTCTATAAAGAGGGTCTACACCCTTATCAGGTAT
66 TAGTAATCTACTGAAACGCTCGAATCATAGCTTCTATAAAGAGGGTCTACACCCTCATCAGGTAT
* * *
12261311 GTTCACTCTACGCGGTGGCACAAGAGGTGCAAAGAATGTACCATCCTCTTGAGCGCTAGCTCTCG
131 GTTCACTCTACGCGGCGGCACAAGAAGTGCAAAGAATGTACCATCCTCTTGAGCGCTAGCTCTCA
12261376 CATTAC
196 CATTAC
* * *
12261382 ACGTTCAAGCAAAAACTCATAGTTAACAGGTGCAAGGTTGACAGGTGTAGGAGCAGGGTTAGCAC
1 ACGTTCAAGCAAAAACTCACAGTTAACAGGTGCAAGATTGACAGGTGTAGAAGCAGGGTTAGCAC
*
12261447 TAGTAATCTACTGAAATGCTCGAATCATAGCTTCTATAAAGAGGGTCTACACCCTCATCAGGTAT
66 TAGTAATCTACTGAAACGCTCGAATCATAGCTTCTATAAAGAGGGTCTACACCCTCATCAGGTAT
*
12261512 GTTCACTCTACGCGGCGG-A-ATAGAAAGTGCAAAGAATGTACCATCTTCTTGAGCGCTAGCTCT
131 GTTCACTCTACGCGGCGGCACA-AG-AAGTGCAAAGAATGTACCATCCTCTTGAGCGCTAGCTCT
12261575 CACATTA
194 CACATTA
12261582 ACACATCTAG
Statistics
Matches: 185, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
199 1 0.01
200 3 0.02
201 181 0.98
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (201 bp):
ACGTTCAAGCAAAAACTCACAGTTAACAGGTGCAAGATTGACAGGTGTAGAAGCAGGGTTAGCAC
TAGTAATCTACTGAAACGCTCGAATCATAGCTTCTATAAAGAGGGTCTACACCCTCATCAGGTAT
GTTCACTCTACGCGGCGGCACAAGAAGTGCAAAGAATGTACCATCCTCTTGAGCGCTAGCTCTCA
CATTAC
Found at i:12265431 original size:21 final size:18
Alignment explanation
Indices: 12265402--12265442 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 18
12265392 AACCGTGACA
12265402 TTACATAATCTGAATGATCT
1 TTACATAATCTG-AT-ATCT
12265422 TTACAATAATCTGATATCT
1 TTAC-ATAATCTGATATCT
12265441 TT
1 TT
12265443 TTCAAAACTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 6 0.30
21 8 0.40
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (18 bp):
TTACATAATCTGATATCT
Found at i:12269843 original size:23 final size:22
Alignment explanation
Indices: 12269783--12269847 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
12269773 CCTGATCAAT
*
12269783 ATACGACACATAAGTGCCAG-A
1 ATACGACACATAAGTGCCTGAA
* *
12269804 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACA-TAAGTGCCTGAA
12269826 ATACGACACATAAAGTGCCTGA
1 ATACGACACAT-AAGTGCCTGA
12269848 TCGGCAAAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
20 8 0.23
21 8 0.23
22 2 0.06
23 17 0.49
ACGTcount: A:0.40, C:0.25, G:0.22, T:0.14
Consensus pattern (22 bp):
ATACGACACATAAGTGCCTGAA
Found at i:12270229 original size:13 final size:13
Alignment explanation
Indices: 12270198--12270235 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
12270188 TATTCATAAA
12270198 TTAATTCACTTTAT
1 TTAATTCA-TTTAT
12270212 TTAATTCATATT-T
1 TTAATTCAT-TTAT
12270225 TTAATTCATTT
1 TTAATTCATTT
12270236 TCCAATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 11 0.48
14 10 0.43
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (13 bp):
TTAATTCATTTAT
Found at i:12270631 original size:72 final size:72
Alignment explanation
Indices: 12270514--12270658 Score: 272
Period size: 72 Copynumber: 2.0 Consensus size: 72
12270504 ATTTTACTTG
* *
12270514 TCATGCATTTTAATTAAAATATAACAATTAATAATAAATAGATTTGAATTATAGTAATACAAATC
1 TCATGCATTTTAATTAAAATATAACAATTAATAATAAACAGATTTGAATTATAGTAATACAAACC
12270579 GTGATTC
66 GTGATTC
12270586 TCATGCATTTTAATTAAAATATAACAATTAATAATAAACAGATTTGAATTATAGTAATACAAACC
1 TCATGCATTTTAATTAAAATATAACAATTAATAATAAACAGATTTGAATTATAGTAATACAAACC
12270651 GTGATTC
66 GTGATTC
12270658 T
1 T
12270659 TGTGTCTACT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.37
Consensus pattern (72 bp):
TCATGCATTTTAATTAAAATATAACAATTAATAATAAACAGATTTGAATTATAGTAATACAAACC
GTGATTC
Found at i:12270636 original size:35 final size:35
Alignment explanation
Indices: 12270520--12270636 Score: 92
Period size: 35 Copynumber: 3.3 Consensus size: 35
12270510 CTTGTCATGC
* *
12270520 ATTTTAATTAAAATATAACAATTAATAATAAATAG
1 ATTTGAATTAAAATATAACAATTAATAATAAACAG
* * * ** * ***
12270555 ATTTGAATTATAGTA-ATACAAATCGTGATTCTCATG
1 ATTTGAATTAAAATATA-ACAATTAATAATAAACA-G
*
12270591 CATTTTAATTAAAATATAACAATTAATAATAAACAG
1 -ATTTGAATTAAAATATAACAATTAATAATAAACAG
12270627 ATTTGAATTA
1 ATTTGAATTA
12270637 TAGTAATACA
Statistics
Matches: 56, Mismatches: 22, Indels: 8
0.65 0.26 0.09
Matches are distributed among these distances:
34 1 0.02
35 30 0.54
36 2 0.04
37 22 0.39
38 1 0.02
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.38
Consensus pattern (35 bp):
ATTTGAATTAAAATATAACAATTAATAATAAACAG
Found at i:12271700 original size:5 final size:5
Alignment explanation
Indices: 12271690--12271724 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
12271680 TATTTATTTC
*
12271690 ATAAT ATAAT ATAAC ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
12271725 TGTTATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:12276816 original size:27 final size:27
Alignment explanation
Indices: 12276753--12276804 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
12276743 AATAAAGTAT
12276753 ATTATTTATTACTTTCATATTTTCTAC
1 ATTATTTATTACTTTCATATTTTCTAC
*
12276780 ATTCTTTATTACTTTCATATTTTCT
1 ATTATTTATTACTTTCATATTTTCT
12276805 TTGTTATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTATTTATTACTTTCATATTTTCTAC
Found at i:12277957 original size:2 final size:2
Alignment explanation
Indices: 12277950--12277988 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
12277940 CATTAAAACC
12277950 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12277989 ACATGAGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:12282666 original size:2 final size:2
Alignment explanation
Indices: 12282659--12282690 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
12282649 TCACGGCTTT
12282659 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12282691 AATAACATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:12288688 original size:32 final size:32
Alignment explanation
Indices: 12288628--12288688 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
12288618 GTTCCCGCTG
**
12288628 CTTAAATTTTAATTTTAATCCTTCTACTACTA
1 CTTAAATTTTAATTTTAATAATTCTACTACTA
*
12288660 CTTATATTTTAA-TTTAATAATTCTTACTA
1 CTTAAATTTTAATTTTAATAATTC-TACTA
12288689 TTATCCACGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 9 0.36
32 16 0.64
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (32 bp):
CTTAAATTTTAATTTTAATAATTCTACTACTA
Found at i:12290406 original size:17 final size:18
Alignment explanation
Indices: 12290374--12290409 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
12290364 AAAATTTACT
*
12290374 TTTTTCAATTACAATTTA
1 TTTTTCAAATACAATTTA
12290392 TTTTTCAAATA-AATTTA
1 TTTTTCAAATACAATTTA
12290409 T
1 T
12290410 AATGAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTTCAAATACAATTTA
Found at i:12293115 original size:32 final size:32
Alignment explanation
Indices: 12293092--12293210 Score: 159
Period size: 32 Copynumber: 3.8 Consensus size: 32
12293082 TAACAAACGT
* *
12293092 CCCATTTTGGTAATTAATATTGTAGCAAACAA
1 CCCATTTCGGTAACTAATATTGTAGCAAACAA
* *
12293124 CCCATTTCGGTAGCTAATATCGTAGCAAACAA
1 CCCATTTCGGTAACTAATATTGTAGCAAACAA
* * * *
12293156 CCCATTTCAGTAATTAATAATGTAGCAAACGA
1 CCCATTTCGGTAACTAATATTGTAGCAAACAA
12293188 CCCATTTCGGTAACTAAT-TTGTA
1 CCCATTTCGGTAACTAATATTGTA
12293211 AGGTAACCCA
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
31 4 0.05
32 70 0.95
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.31
Consensus pattern (32 bp):
CCCATTTCGGTAACTAATATTGTAGCAAACAA
Found at i:12299831 original size:163 final size:161
Alignment explanation
Indices: 12299520--12299848 Score: 559
Period size: 163 Copynumber: 2.0 Consensus size: 161
12299510 GATGACCATT
* * * *
12299520 TAAGGAACATGCAAGACCATGGATATATAGTGGTTCCTTGTCCTAAAAGTAGCATATGAAATAAG
1 TAAGGAACATGCAAGACCATAGATATATACTAGTTCATTGTCCTAAAAGTAGCATATGAAATAAG
* *
12299585 CATTTATCTTTATGTGATTCCATCATCTGAAAACATGATAAGCCATTCAACATAACACTAGGATG
66 CATCTATCTTTATGTGATTCCATCATCTGAAAACATGATAAGCCACTCAACATAACACTAGGATG
12299650 TTAAGATTAGGTGCTAATTGATAATTGAGTG
131 TTAAGATTAGGTGCTAATTGATAATTGAGTG
*
12299681 TAAGGAACATGCAAGACCATAGATATATACTAGTTCATTGTCCTACAAGTAGCATATGAAATAAG
1 TAAGGAACATGCAAGACCATAGATATATACTAGTTCATTGTCCTAAAAGTAGCATATGAAATAAG
* *
12299746 CATCTATCTTTATATGTGATTCCATCATCTGAAAACATGATAAGCCACTCAGCTTAACACTAGGA
66 CATCTATC-TT-TATGTGATTCCATCATCTGAAAACATGATAAGCCACTCAACATAACACTAGGA
12299811 TGTTAAGATTAGGTGCTAATTGATAATTGAGTG
129 TGTTAAGATTAGGTGCTAATTGATAATTGAGTG
12299844 TAAGG
1 TAAGG
12299849 TGATAATCTT
Statistics
Matches: 157, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
161 67 0.43
162 2 0.01
163 88 0.56
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (161 bp):
TAAGGAACATGCAAGACCATAGATATATACTAGTTCATTGTCCTAAAAGTAGCATATGAAATAAG
CATCTATCTTTATGTGATTCCATCATCTGAAAACATGATAAGCCACTCAACATAACACTAGGATG
TTAAGATTAGGTGCTAATTGATAATTGAGTG
Found at i:12308522 original size:483 final size:483
Alignment explanation
Indices: 12307616--12308585 Score: 1604
Period size: 483 Copynumber: 2.0 Consensus size: 483
12307606 CACAACTTCA
* *
12307616 TGCAGTTGGGTTCTCTCCTCTTGAGTTGCACTGAGCAGCTGCCCTGCTTCCAGAAGCTCATTCTC
1 TGCAGTTGGGTTCTCTCCTCTTGAGTTGCACTGAGCAGCTGCCCTGCTTCCAAAAACTCATTCTC
* * * * *
12307681 CTTCTGGCATAGTAGATCCTTTCCCTTCACGACTTCGTCATTTAACTGATTGCAAACAGATTTAA
66 CTTCAGGCATAATAGATCCTTTCCCTTCACAACTTCATCATTTAACTGATTGCAAACAGATCTAA
* *
12307746 CTGAAACTAGCTCATTCTCCAAGTTCTGCACCTTATCCTTGAGATGTGAGTTTACCATTTGCGTT
131 CTGAAACTAGCCCATTCTCCAAGTTCTGCACCTTATCCTTGAGATGTAAGTTTACCATTTGCGTT
*
12307811 TCTTCAAACTTGATCCCCATTATCCTCAGTTTTCCCTCAAGATCATCATTGGAACATTTGAGTTT
196 TCTTCAAACTTGATCCCCATTATCCTCAGTTTTCCCTCAAGATCATCATTGAAACATTTGAGTTT
12307876 ATCCAGATTGGCCATGAGATGCTTTATTTCAACAAAATTATCAGTAATAATGTCCTTGAGAATAA
261 ATCCAGATTGGCCATGAGATGCTTTATTTCAACAAAATTATCAGTAATAATGTCCTTGAGAATAA
* *
12307941 ACGAAATGTTACTTTGAGATACTGCTTCAGCAAAGACAGCGCAGTTTTCCTCTTCTAGATTGTGT
326 ACGAAATGTTACTTTGAGATACTGCTTCAGCAAAGACAGCACAATTTTCCTCTTCTAGATTGTGT
*
12308006 TTCTCCTTGCCCAAGTCTGAAACAAACTTCATCAAAGTCCTTTTCTCATCTAGCACCTTGTGGTT
391 TTCTCCTTGCCCAAATCTGAAACAAACTTCATCAAAGTCCTTTTCTCATCTAGCACCTTGTGGTT
12308071 CTCTTCAACTGAACTTTGATATGCCCTT
456 CTCTTCAACTGAACTTTGATATGCCCTT
* * * * *
12308099 TGCAGTTGGTTTCTCTCCTCTTGAGTTGCACTGAGCATCTTCTCTGCTTCCAAAAACTCCTTCTC
1 TGCAGTTGGGTTCTCTCCTCTTGAGTTGCACTGAGCAGCTGCCCTGCTTCCAAAAACTCATTCTC
12308164 CTTCAGGCATAATAGATCCTTTCCCTTCACAACTTCATCATTTAACTGATTGCAAACAGATCTAA
66 CTTCAGGCATAATAGATCCTTTCCCTTCACAACTTCATCATTTAACTGATTGCAAACAGATCTAA
*
12308229 CTGAAACTAGCCCATTCTCCAAGTTCTGCA-CTGTATCCTTGAGATGTAAGTTTACCATTTGTGT
131 CTGAAACTAGCCCATTCTCCAAGTTCTGCACCT-TATCCTTGAGATGTAAGTTTACCATTTGCGT
* * *
12308293 TTCTTCAAGCTTGATCTCCATTATCCTCAGTTTTCCCTCAAGATCGTCATTGAAACATTTGAGTT
195 TTCTTCAAACTTGATCCCCATTATCCTCAGTTTTCCCTCAAGATCATCATTGAAACATTTGAGTT
* *
12308358 TATCCAGATTGG-CACTGAGATGCTTTATTTCCACAAAATTATCAGTAATAATGTTCTTGAGAAT
260 TATCCAGATTGGCCA-TGAGATGCTTTATTTCAACAAAATTATCAGTAATAATGTCCTTGAGAAT
* * *
12308422 AAGA-GCAATGTTACTTTGAGATATTGCTTCGGCAAAGACAGCACAATTTTCCTCTTCTAGATTG
324 AA-ACGAAATGTTACTTTGAGATACTGCTTCAGCAAAGACAGCACAATTTTCCTCTTCTAGATTG
*** *
12308486 TGTTTCTCCTTGCCCAAATCTGAAACTTCCTTCATCAAAGTCCTTTTCTCGTCTAGCACCTTGTG
388 TGTTTCTCCTTGCCCAAATCTGAAACAAACTTCATCAAAGTCCTTTTCTCATCTAGCACCTTGTG
*
12308551 GTTCTCTTCAATTGAACTTTGATATGCCCTT
453 GTTCTCTTCAACTGAACTTTGATATGCCCTT
12308582 TGCA
1 TGCA
12308586 ACTCTGATAG
Statistics
Matches: 452, Mismatches: 32, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
482 4 0.01
483 447 0.99
484 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (483 bp):
TGCAGTTGGGTTCTCTCCTCTTGAGTTGCACTGAGCAGCTGCCCTGCTTCCAAAAACTCATTCTC
CTTCAGGCATAATAGATCCTTTCCCTTCACAACTTCATCATTTAACTGATTGCAAACAGATCTAA
CTGAAACTAGCCCATTCTCCAAGTTCTGCACCTTATCCTTGAGATGTAAGTTTACCATTTGCGTT
TCTTCAAACTTGATCCCCATTATCCTCAGTTTTCCCTCAAGATCATCATTGAAACATTTGAGTTT
ATCCAGATTGGCCATGAGATGCTTTATTTCAACAAAATTATCAGTAATAATGTCCTTGAGAATAA
ACGAAATGTTACTTTGAGATACTGCTTCAGCAAAGACAGCACAATTTTCCTCTTCTAGATTGTGT
TTCTCCTTGCCCAAATCTGAAACAAACTTCATCAAAGTCCTTTTCTCATCTAGCACCTTGTGGTT
CTCTTCAACTGAACTTTGATATGCCCTT
Found at i:12310902 original size:855 final size:846
Alignment explanation
Indices: 12309245--12312216 Score: 3289
Period size: 855 Copynumber: 3.4 Consensus size: 846
12309235 CAGACTTTCT
* * * *
12309245 CCTTGTAGGAAATGGATCTGAGATTCCATAGAAGTAGCCCTGGTTTCATTCAACTTCACAAAACT
1 CCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
* **
12309310 AGCATGTTGC-TGCTTTTCAGCATCTAATGACCTTTGTAG-TTCTTCTACTTCATGAAGCATTGA
66 AGCATGTT-CTTGCTTTTCAGCATCTAATGACTTTTGTAGCTT-TTCTACTTCATGAAGTGTTGA
* *
12309373 TTCTCTCTCTTTCTCCAGGA-CCTCATACTTTTCTTCTAATCCCTGATATCTATTTTCCAAATCT
129 TTCTCTCTCTTTCTCCA-GACCCACATATTTTTCTTCTAATCCCTGATATCT-TTTTCCAAATCT
* * *
12309437 TCCATCCTTTTCTGACTGATATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAAACCAGA
192 TCCAGCCTTTTCTGACTGACATTCAACTCAG-AATCAAACCTTCTCTCTGTGTTAGCAGACCAGA
* *
12309502 CTTCTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTGTAC-TCAATCCTTCA
256 CTTCTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTT-TCCTTCAAACCTTCA
* * *
12309566 ACTTCAGCATTTGCATCACAAAGATAATTCTTCACTTCTGAAAACTGCTCAGACTGAACCTTCAA
320 ACTTCAGCATTTGCATCACAAAGATGATTCTTCACTTCTGAAAATTGCTCGGACTGAACCTTCAA
*
12309631 TTCCTGATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAGCTTCAGTTGCCCAAGCA
385 CTCCTGATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAG-TTCAGTTGCCCAAGCA
* *
12309696 ATCCAATAAGAACTGAATTCTCAATTATGATTTGCTGATTTTCATCCAGAGACTTCAAAAGTGAA
449 ATCCAATAAGAACTGAATTCTCAATTATGAATTGCTGATTTTCATCCAGAGACTT-TAAAGTGAA
* * * *
12309761 TTTTGCATCTTTTGGAGTCTGCCAAATATACAGTCAAGAACAGATTGGTCTTGTTTGATCATGTC
513 TTTTGCATCTTTTGGAGCCTGCCAAATATACAGTCAAGAACTGATTGGTCTTGTTTGAT-TTATC
* * *
12309826 ATCATAACTATGGATAGCATCAATCCCAAGAGTCCTCAACATCTGATTAAGCCCCATCCTCAAG-
577 ATCATAACCATGGATA-CATCAATACCAAGAATCCTCAACATCTGA-TAAGCCCCATCCTC-AGT
* *
12309890 ATGGTAATTAGATCAAATAAGGATTTTATCTCCATCTGTTTTCTGGAATTTCCTAGCTCCAATTC
639 ATAGTAATTAGATCAAATAAGGATTTTATCTCCATCTGTTTT-TGGAATTTCCAAGCTCCAATTC
* * ** * *
12309955 AGAGATAAGTATTTCA-GACAATTTCAACGCTTCCAAGAGCTTCCTACACTCAAGCAATAGGGAT
703 AGAGATAAGT-TTTTAGGA-AAATTGGAGGCTTCCAAGAGTTTCCTACACTCAAGCAATAGGGAT
* * * *
12310019 AAATTATTCTCTTCCAGATCTCGTGCACATCTCTGCAAAACGAAGGTTTCTACATGAGCATCCAT
766 AAATTCTTCTCTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCAT
12310084 GGCCTTGTCAAGTTCC
831 GGCCTTGTCAAGTTCC
*
12310100 CCTTGTAGAAAATGGATCTGAGATACCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
1 CCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
* * * * * *
12310165 AGCATGTTCTTCCATTTCAGCATCCAATGACTTTTGTAGCTTTTGTACTCCATGAAGTGCTGATT
66 AGCATGTTCTTGCTTTTCAGCATCTAATGACTTTTGTAGCTTTTCTACTTCATGAAGTGTTGATT
* * *
12310230 CTCTCTCTTTCTCCAAACCCACATATTTTTCTTCTAATTCCTGATATCGTTTTTCCAAATCTTTC
131 CTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATC-TTTTTCCAAATCTTCC
* *
12310295 AGCCTTTTCTGGCTGACATTCAACTCAGAAGTCAAACCTTCTCTCTGTGTTAGCAGACCAAACTT
195 AGCCTTTTCTGACTGACATTCAACTCAGAA-TCAAACCTTCTCTCTGTGTTAGCAGACCAGACTT
12310360 CTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTTCCTTCAAACCTTCAACTT
259 CTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTTCCTTCAAACCTTCAACTT
*
12310425 CAGCATTTGCATCACAAAGATGATTCTTCACTTCTGAAAATTGCTCGGACTGAACCTTCAGCTCC
324 CAGCATTTGCATCACAAAGATGATTCTTCACTTCTGAAAATTGCTCGGACTGAACCTTCAACTCC
*
12310490 TGATGCAGTGAATTATTTTCTGTTGCAAGATTTTCAGCCTCTAGTTCCAGTTGCCCAAGCAATCC
389 TGATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAGTT-CAGTTGCCCAAGCAATCC
* *
12310555 AATAAGAACTGAATTCTCAATTATGAACTGCTGATTTTCGTCCAGAGACTTTAGAAGTGAATTTT
453 AATAAGAACTGAATTCTCAATTATGAATTGCTGATTTTCATCCAGAGACTTTA-AAGTGAATTTT
** * *
12310620 GCATCTTTTGGAGCCTGCCTGATATACAGTCAAGTACTGATTGATCTTGTTTGATTGTATCATCA
517 GCATCTTTTGGAGCCTGCCAAATATACAGTCAAGAACTGATTGGTCTTGTTTGATT-TATCATCA
* *
12310685 TAACCATGGATACCATCAAAACCAAGAATCCTCAACATCTGATAGAGCCCCATCCTCAGTAAAGT
581 TAACCATGGATA-CATCAATACCAAGAATCCTCAACATCTGATA-AGCCCCATCCTCAGTATAGT
* * * * * *
12310750 GATTTGATCAGATAAGGATTCTATCTCCACCTGTTTTTGGGAATTTCCAAGCTCCAACTCAGAGA
644 AATTAGATCAAATAAGGATTTTATCTCCATCTGTTTTT-GGAATTTCCAAGCTCCAATTCAGAGA
* * * *
12310815 TAAGTTTTTTGGATAATCTGGAGGCTTCCAAGAGTTTGCTACACTCACGCAATAGGGATAAATTC
708 TAAGTTTTTAGGAAAAT-TGGAGGCTTCCAAGAGTTTCCTACACTCAAGCAATAGGGATAAATTC
* *
12310880 TTCACTTCGAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCATGGCCTT
772 TTCTCTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCATGGCC-T
*
12310945 GTCCAGTTCCTTCTCATATTCTTTCTTCCTGCATAGACTTTCT
836 -T---G-----------------------T-CA-AG---TTCC
* * ** * *
12310988 CCTTGTAGAAAATGGATTTGAGATTCCATAGAAGTGACTCGGACTTCATTCGACTTCACAAATCT
1 CCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
* * * **
12311053 AGCATGTTCTTGCTTTTCCGCATCTAGTGACTTTTGTAGCTCTTCTACTTCACAAAGTGTTGATT
66 AGCATGTTCTTGCTTTTCAGCATCTAATGACTTTTGTAGCTTTTCTACTTCATGAAGTGTTGATT
* * *
12311118 CTCTCACTTTCTCCAGACCCACATATTTTTCCTCTAATCCCTGATATCTTTCCTCCAAATCTTCC
131 CTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTT-TTCCAAATCTTCC
*
12311183 AGCCTTTTCTGACTGACATTCAACTCAGATATCAAACCTTCTCTCTGTGTTAGCAGGCCAGACTT
195 AGCCTTTTCTGACTGACATTCAACTCAGA-ATCAAACCTTCTCTCTGTGTTAGCAGACCAGACTT
* * * * * * * * *
12311248 CTCTTCACCAAGCAGCAGGCATGAACTTTCTAAGCTC-TTAAGTTTTGCTCTTGATA-TTTCAAG
259 CTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAA-TTTTTC-CTTCAAACCTTCAAC
* * * * * * * * *
12311311 TTCAGCATTTGTATTAAAAAG-GGAAGTCTCCAATTCTGAGAACTT-CTCGAACTGAACCTTCAA
322 TTCAGCATTTGCATCACAAAGATG-ATTCTTCACTTCTGA-AAATTGCTCGGACTGAACCTTCAA
* * * * * *
12311374 CTCCTGGTGCAGTGAGTTCTTCTCTGTAGCAAGATTTTCTGCCTCAAGTTTCAGTTGCCCAAGCA
385 CTCCTGATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAG-TTCAGTTGCCCAAGCA
* *
12311439 ATCCAATAAGAACTGAATTCTCAATTATGAATTGCTGATTATCATCCAGAGACTTTAAATGTGAG
449 ATCCAATAAGAACTGAATTCTCAATTATGAATTGCTGATTTTCATCCAGAGACTTTAAA-GTGAA
* * *
12311504 TTCTT-CATCTTTTGGATCCCT-CCAAATATACAGTCAAGGACTAATTGGTCTTGTTTGATCTTA
513 TT-TTGCATCTTTTGGA-GCCTGCCAAATATACAGTCAAGAACTGATTGGTCTTGTTTGAT-TTA
** * * *
12311567 TCATCATAACCATGG--ACATCAATTTCAAG-AGCCTTCAGCATTTGATAAAGCCCCATCCTCAG
575 TCATCATAACCATGGATACATCAATACCAAGAATCC-TCAACATCTGAT-AAGCCCCATCCTCAG
* * **
12311629 TATAGTAATTCGATCAAATAAGGATTTTATCTCCATCTCTTTTTTGGAATTTCTGAGCTCCAATT
638 TATAGTAATTAGATCAAATAAGGATTTTATCTCCATCT-GTTTTTGGAATTTCCAAGCTCCAATT
* * *
12311694 CAGAGATAAGTTTTTCAGAAAAATTGGAGGCTTCCAGGAGTTTCCTACACTCAAACAATAGGGAT
702 CAGAGATAAGTTTTT-AGGAAAATTGGAGGCTTCCAAGAGTTTCCTACACTCAAGCAATAGGGAT
* * *
12311759 AAATTCTTCTCTTCCATATCTTGTGCACATTTCTGCAAGATGAAGGTTTCTACATGAGCATTCAT
766 AAATTCTTCTCTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCAT
12311824 GGACCTGTCCAGTTCCTCTTCATATTCTTTCTTTCTGCACAGACTTTCC
831 GG-CCT-T---G-----------------------T-CA-AG---TTCC
* * **
12311873 CCTTGTAGAAAACT-GATCTGAGATTCCATAGCAGTAACTCGGGTTTCATTCAACTGCATGAAAC
1 CCTTGTAGAAAA-TGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAAC
* * * * *
12311937 TGGCATATTCTTGCTTTTCCA-CATCTAGTGACTTTTGTAGCTCTTCTACTTCACT-AAGTGTTA
65 TAGCATGTTCTTGCTTTT-CAGCATCTAATGACTTTTGTAGCTTTTCTACTTCA-TGAAGTGTTG
* ** * *
12312000 ATTCTCTCTCTTTCTCCAGGCCCATGTATTTTTCTTCTAAACCCTGATATCTTTTTTCCGAATCT
128 ATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATC-TTTTTCCAAATCT
* * * * * * * * **
12312065 TCCAACCTTTCCTGACTGATACTCAACTCAGAAATCAAGCCTTCTCTTTGTCTTATCAGGGCAGA
192 TCCAGCCTTTTCTGACTGACATTCAACTCAG-AATCAAACCTTCTCTCTGTGTTAGCAGACCAGA
* * ** * ** * * * *
12312130 CTTCTCATCACCAAGCAGCAGGCATGAGTTTTCTAAGCTCATTACCTTTACCCTCAATCCTCCAA
256 CTTCTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTTCCTTCAAACCTTCAA
* * *
12312195 GTTCAGCATGTGCATCAAAAAG
321 CTTCAGCATTTGCATCACAAAG
12312217 GGAATTCTCC
Statistics
Matches: 1829, Mismatches: 218, Indels: 110
0.85 0.10 0.05
Matches are distributed among these distances:
854 19 0.01
855 733 0.40
856 4 0.00
857 1 0.00
860 1 0.00
883 1 0.00
884 8 0.00
885 516 0.28
886 23 0.01
887 10 0.01
888 495 0.27
889 18 0.01
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (846 bp):
CCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
AGCATGTTCTTGCTTTTCAGCATCTAATGACTTTTGTAGCTTTTCTACTTCATGAAGTGTTGATT
CTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTCCAAATCTTCCA
GCCTTTTCTGACTGACATTCAACTCAGAATCAAACCTTCTCTCTGTGTTAGCAGACCAGACTTCT
CATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTTCCTTCAAACCTTCAACTTCA
GCATTTGCATCACAAAGATGATTCTTCACTTCTGAAAATTGCTCGGACTGAACCTTCAACTCCTG
ATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAGTTCAGTTGCCCAAGCAATCCAAT
AAGAACTGAATTCTCAATTATGAATTGCTGATTTTCATCCAGAGACTTTAAAGTGAATTTTGCAT
CTTTTGGAGCCTGCCAAATATACAGTCAAGAACTGATTGGTCTTGTTTGATTTATCATCATAACC
ATGGATACATCAATACCAAGAATCCTCAACATCTGATAAGCCCCATCCTCAGTATAGTAATTAGA
TCAAATAAGGATTTTATCTCCATCTGTTTTTGGAATTTCCAAGCTCCAATTCAGAGATAAGTTTT
TAGGAAAATTGGAGGCTTCCAAGAGTTTCCTACACTCAAGCAATAGGGATAAATTCTTCTCTTCC
AGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCATGGCCTTGTCAAGTTC
C
Found at i:12312217 original size:885 final size:885
Alignment explanation
Indices: 12310096--12312227 Score: 2800
Period size: 885 Copynumber: 2.4 Consensus size: 885
12310086 CCTTGTCAAG
*
12310096 TTCCCCTTGTAGAAAATGGATCTGAGATACCATAGAAGTAACTCGGGTTTCATTCAACTTCACAA
1 TTCCCCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCA-AA
* * * * * * *
12310161 AACTAGCATGTTCTTCCATTT-CAGCATCCAATGACTTTTGTAGCTTTTGTACTCCA-TGAAGTG
65 AACTAGCATGTTCTTGCTTTTCCA-CATCTAGTGACTTTTGTAGCTCTTCTACTTCACT-AAGTG
* * * *
12310224 CTGATTCTCTCTCTTTCTCCAAACCCACATATTTTTCTTCTAATTCCTGATATCGTTTTTCCAAA
128 TTGATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTTCCAAA
* * * *
12310289 TCTTTCAGCCTTTTCTGGCTGACATTCAACTCAGAAGTCAAACCTTCTCTCTGTGTTAGCAGACC
193 TCTTCCAGCCTTTTCTGACTGACATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAGGCC
* * * * * *
12310354 AAACTTCTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTTCCTTCAAACCTT
258 AGACTTCTCATCACCAAGCAGCAGGCATGAAATTTCTAAGCTC-TTAATTTTACCCTCAATCCTT
* * * * * *
12310419 CAACTTCAGCATTTGCATCACAAAGATG-ATTCTTCACTTCTGAAAATTGCTCGGACTGAACCTT
322 CAAGTTCAGCATTTGCATCAAAAAG-GGAATTCTCCAATTCTGAAAATTGCTCGAACTGAACCTT
* * * *
12310483 CAGCTCCTGATGCAGTGAATTATTTTCTGTTGCAAGATTTTCAGCCTCTAGTTCCAGTTGCCCAA
386 CAACTCCTGATGCAGTGAATTATTCTCTGTAGCAAGATTTTCAGCCTCAAGTTCCAGTTGCCCAA
* *
12310548 GCAATCCAATAAGAACTGAATTCTCAATTATGAACTGCTGATTTTCGTCCAGAGACTTTAGAAGT
451 GCAATCCAATAAGAACTGAATTCTCAATTATGAACTGCTGATTATCATCCAGAGACTTTAGAAGT
* ** * *
12310613 GAATTTTGCATCTTTTGGAGCCTGCCTGATATACAGTCAAGTACTGATTGATCTTGTTTGATTGT
516 GAATTTTGCATCTTTTGGACCCTGCCAAATATACAGTCAAGGACTAATTGATCTTGTTTGATTGT
* *
12310678 ATCATCATAACCATGGATACCATCAAAACCAAGAATCCTCAACATCTGATAGAGCCCCATCCTCA
581 ATCATCATAACCATGGA-ACCATCAAAACCAAGAAGCCTCAACATCTGATAAAGCCCCATCCTCA
* * * *
12310743 GTAAAGTGATTTGATCAGATAAGGATTCTATCTCCACCTGTTTTTGGGAATTTCCAAGCTCCAAC
645 GTAAAGTAATTCGATCAAATAAGGATTCTATCTCCACCTCTTTTTGGGAATTTCCAAGCTCCAAC
* * * * **
12310808 TCAGAGATAAGTTTTTTGGATAATCTGGAGGCTTCCAAGAGTTTGCTACACTCACGCAATAGGGA
710 TCAGAGATAAGTTTTTAGAAAAATCTGGAGGCTTCCAAGAGTTTCCTACACTCAAACAATAGGGA
*
12310873 TAAATTCTTCACTTCGAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCA
775 TAAATTCTTCACTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCA
*
12310938 TGGCCTTGTCCAGTTCCTTCTCATATTCTTTCTTCCTGCATAGACT
840 TGGCCTTGTCCAGTTCCTTCTCATATTCTTTCTTCCTGCACAGACT
* * * ** *
12310984 TTCTCCTTGTAGAAAATGGATTTGAGATTCCATAGAAGTGACTCGGACTTCATTCGACTTCACAA
1 TTCCCCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCA-AA
* * *
12311049 ATCTAGCATGTTCTTGCTTTTCCGCATCTAGTGACTTTTGTAGCTCTTCTACTTCACAAAGTGTT
65 AACTAGCATGTTCTTGCTTTTCCACATCTAGTGACTTTTGTAGCTCTTCTACTTCACTAAGTGTT
* * **
12311114 GATTCTCTCACTTTCTCCAGACCCACATATTTTTCCTCTAATCCCTGATATCTTTCCTCCAAATC
130 GATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTTCCAAATC
*
12311179 TTCCAGCCTTTTCTGACTGACATTCAACTCAGATATCAAACCTTCTCTCTGTGTTAGCAGGCCAG
195 TTCCAGCCTTTTCTGACTGACATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAGGCCAG
* * * * ** **
12311244 ACTTCTCTTCACCAAGCAGCAGGCATGAACTTTCTAAGCTCTTAAGTTTTGCTCTTGATATTTCA
260 ACTTCTCATCACCAAGCAGCAGGCATGAAATTTCTAAGCTCTTAA-TTTTACCCTCAATCCTTCA
* * * *
12311309 AGTTCAGCATTTGTATTAAAAAGGGAAGTCTCCAATTCTGAGAACTT-CTCGAACTGAACCTTCA
324 AGTTCAGCATTTGCATCAAAAAGGGAATTCTCCAATTCTGA-AAATTGCTCGAACTGAACCTTCA
* * * * *
12311373 ACTCCTGGTGCAGTGAGTTCTTCTCTGTAGCAAGATTTTCTGCCTCAAGTTTCAGTTGCCCAAGC
388 ACTCCTGATGCAGTGAATTATTCTCTGTAGCAAGATTTTCAGCCTCAAGTTCCAGTTGCCCAAGC
*
12311438 AATCCAATAAGAACTGAATTCTCAATTATGAATTGCTGATTATCATCCAGAGACTTTA-AATGTG
453 AATCCAATAAGAACTGAATTCTCAATTATGAACTGCTGATTATCATCCAGAGACTTTAGAA-GTG
* *
12311502 AGTTCTT-CATCTTTTGGATCCCT-CCAAATATACAGTCAAGGACTAATTGGTCTTGTTTGATCT
517 AATT-TTGCATCTTTTGGA-CCCTGCCAAATATACAGTCAAGGACTAATTGATCTTGTTTGAT-T
*** * *
12311565 -TATCATCATAACCATGG-A-CATCAATTTCAAG-AGCCTTCAGCATTTGATAAAGCCCCATCCT
579 GTATCATCATAACCATGGAACCATCAAAACCAAGAAGCC-TCAACATCTGATAAAGCCCCATCCT
* * * * **
12311626 CAGTATAGTAATTCGATCAAATAAGGATTTTATCTCCATCTCTTTTTTGGAATTTCTGAGCTCCA
643 CAGTAAAGTAATTCGATCAAATAAGGATTCTATCTCCACCTCTTTTTGGGAATTTCCAAGCTCCA
* *
12311691 ATTCAGAGATAAGTTTTTCAGAAAAAT-TGGAGGCTTCCAGGAGTTTCCTACACTCAAACAATAG
708 ACTCAGAGATAAGTTTTT-AGAAAAATCTGGAGGCTTCCAAGAGTTTCCTACACTCAAACAATAG
* * * *
12311755 GGATAAATTCTTCTCTTCCATATCTTGTGCACATTTCTGCAAGATGAAGGTTTCTACATGAGCAT
772 GGATAAATTCTTCACTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCAT
*
12311820 TCATGGACC-TGTCCAGTTCC-TCTTCATATTCTTTCTTTCTGCACAGACT
837 TCATGG-CCTTGTCCAGTTCCTTC-TCATATTCTTTCTTCCTGCACAGACT
* * *
12311869 TTCCCCTTGTAGAAAACT-GATCTGAGATTCCATAGCAGTAACTCGGGTTTCATTCAACTGCATG
1 TTCCCCTTGTAGAAAA-TGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCA-A
* *
12311933 AAACTGGCATATTCTTGCTTTTCCACATCTAGTGACTTTTGTAGCTCTTCTACTTCACTAAGTGT
64 AAACTAGCATGTTCTTGCTTTTCCACATCTAGTGACTTTTGTAGCTCTTCTACTTCACTAAGTGT
* * ** * *
12311998 TAATTCTCTCTCTTTCTCCAGGCCCATGTATTTTTCTTCTAAACCCTGATATCTTTTTTCCGAAT
129 TGATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTTCCAAAT
* * * * * * * * *
12312063 CTTCCAACCTTTCCTGACTGATACTCAACTCAGAAATCAAGCCTTCTCTTTGTCTTATCAGGGCA
194 CTTCCAGCCTTTTCTGACTGACATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAGGCCA
** ** *
12312128 GACTTCTCATCACCAAGCAGCAGGCATGAGTTTTCTAAGCTCATTACCTTTACCCTCAATCCTCC
259 GACTTCTCATCACCAAGCAGCAGGCATGAAATTTCTAAGCTC-TTAATTTTACCCTCAATCCTTC
*
12312193 AAGTTCAGCATGTGCATCAAAAAGGGAATTCTCCA
323 AAGTTCAGCATTTGCATCAAAAAGGGAATTCTCCA
12312228 GCACGTTATT
Statistics
Matches: 1074, Mismatches: 155, Indels: 33
0.85 0.12 0.03
Matches are distributed among these distances:
884 5 0.00
885 540 0.50
886 12 0.01
887 7 0.01
888 499 0.46
889 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (885 bp):
TTCCCCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCAAAA
ACTAGCATGTTCTTGCTTTTCCACATCTAGTGACTTTTGTAGCTCTTCTACTTCACTAAGTGTTG
ATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTTCCAAATCT
TCCAGCCTTTTCTGACTGACATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAGGCCAGA
CTTCTCATCACCAAGCAGCAGGCATGAAATTTCTAAGCTCTTAATTTTACCCTCAATCCTTCAAG
TTCAGCATTTGCATCAAAAAGGGAATTCTCCAATTCTGAAAATTGCTCGAACTGAACCTTCAACT
CCTGATGCAGTGAATTATTCTCTGTAGCAAGATTTTCAGCCTCAAGTTCCAGTTGCCCAAGCAAT
CCAATAAGAACTGAATTCTCAATTATGAACTGCTGATTATCATCCAGAGACTTTAGAAGTGAATT
TTGCATCTTTTGGACCCTGCCAAATATACAGTCAAGGACTAATTGATCTTGTTTGATTGTATCAT
CATAACCATGGAACCATCAAAACCAAGAAGCCTCAACATCTGATAAAGCCCCATCCTCAGTAAAG
TAATTCGATCAAATAAGGATTCTATCTCCACCTCTTTTTGGGAATTTCCAAGCTCCAACTCAGAG
ATAAGTTTTTAGAAAAATCTGGAGGCTTCCAAGAGTTTCCTACACTCAAACAATAGGGATAAATT
CTTCACTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCATGGCCT
TGTCCAGTTCCTTCTCATATTCTTTCTTCCTGCACAGACT
Done.