Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 50 of 425
Found at i:13404126 original size:66 final size:66
Alignment explanation
Indices: 13403962--13404168 Score: 240
Period size: 66 Copynumber: 3.2 Consensus size: 66
13403952 TTTTTGCACT
* * * *
13403962 CATAACACATCTAGTTAGGAGCATTTGATTTATTTTTGATCATAGTATCCTAATTATTTGACATA
1 CATAATACATCTAGTTAGGAGCATTTGATTCA-TTTTGATCATAGCATCCTAATTATTTAACATA
13404027 AG
65 AG
* * * * *
13404029 --T-ATCACATCTAGTTAGGTGCATTTGACTCATTTCGATCATAGCATCCTCATTATTTAACATC
1 CATAAT-ACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTAACATA
13404091 AG
65 AG
* * **
13404093 CATAATACATCTAGTTAGGAGTATTTGATTCATTTTGATCATAACATCCTAATTATTTGGCATAA
1 CATAATACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTAACATAA
*
13404158 A
66 G
*
13404159 CATGATACAT
1 CATAATACAT
13404169 GAAACCGAGT
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
64 30 0.26
65 24 0.21
66 60 0.52
67 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (66 bp):
CATAATACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTAACATAA
G
Found at i:13405215 original size:180 final size:176
Alignment explanation
Indices: 13404825--13405286 Score: 489
Period size: 176 Copynumber: 2.6 Consensus size: 176
13404815 GAGCAGATTT
* * * *
13404825 AAGCCTCATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAAATGAGTCTTATCTTCCAGAGATAG
1 AAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAG
* * * * * *
13404890 CAAGGAAGTAGACTGAGAATTAAATATTTTATCTCCCTAAACAGTAACGGAGCAGATTAAAAATG
66 CAAGGAAGTAGACTAAGAATTGAAGATTTTATCTCCCTAAACAGCAAAGGAGCAGATTAAAAATA
* * *
13404955 GTGAATCTTATCTCCATGTATCGGCAATGGAGCAAATTTTACCACC
131 ATGAATCTTATCTCCATGTATCGACAATGGAACAAATTTTACCACC
* * *
13405001 AAGCCTTATCTCTCTGACGTAGCAAGAGAGCAGGTTGAAGAATGAGTTTTACCTTCCTGAGGTAG
1 AAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAG
* *** * **
13405066 CAAGGAAGCAGACTAAGAATTGAAGATTTTATCTCCCTGAAGTTGCAAAGGAGTAGATCTTCGTA
66 CAAGGAAGTAGACTAAGAATTGAAGATTTTATCTCCCT-AAACAGCAAAGGAGCAGA--TT-AAA
* * * * *
13405131 GATAATGAATCTTATCTCCATGTATTGACGATGGAACAGATTTTTACCACT
127 AATAATGAATCTTATCTCCATGTATCGACAATGGAACA-AATTTTACCACC
* * * ** * *
13405182 AA-CCTTGTCTTTCTGAGGTAGCAAGAGAGCAGGTCGGCGATTGTAGTCTTATCTTCCTAAGGTA
1 AAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATG-AGTCTTATCTTCCTGAGGTA
* * * *
13405246 GCAAAGAAGTAAACTGAAG-ATTGAAGA-TCTATTTCCCTAAA
65 GCAAGGAAGTAGACT-AAGAATTGAAGATTTTATCTCCCTAAA
13405287 GCAGTTACAG
Statistics
Matches: 235, Mismatches: 44, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
176 92 0.39
177 12 0.05
179 4 0.02
180 75 0.32
181 49 0.21
182 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (176 bp):
AAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAG
CAAGGAAGTAGACTAAGAATTGAAGATTTTATCTCCCTAAACAGCAAAGGAGCAGATTAAAAATA
ATGAATCTTATCTCCATGTATCGACAATGGAACAAATTTTACCACC
Found at i:13407972 original size:2 final size:2
Alignment explanation
Indices: 13407965--13408001 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
13407955 TTAACCCTTT
*
13407965 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13408002 GTTTTGTTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13408667 original size:27 final size:24
Alignment explanation
Indices: 13408624--13409150 Score: 157
Period size: 26 Copynumber: 21.1 Consensus size: 24
13408614 TTTCGACATC
*
13408624 AATAATATAAAACAATTTCAAATA
1 AATAATATAAAACAATTTAAAATA
13408648 AATAATATGTAAAACAAATTTAAAATA
1 AATAATA--TAAAAC-AATTTAAAATA
* *
13408675 AAT-A-ATAAGACAATTTTAAATGAA
1 AATAATATAAAACAATTTAAAAT--A
* *
13408699 TAATATATAGAAAAACAAGTTTAAAATT
1 -AATA-ATA-TAAAACAA-TTTAAAATA
* * *
13408727 GATACTATAAAAAGCAATTTAAAGTA
1 AATAATAT-AAAA-CAATTTAAAATA
* * *
13408753 AATAGTGTAAAACAATTTAAAATC
1 AATAATATAAAACAATTTAAAATA
* * *
13408777 ATTAATATACAA-AATAATAAAAT-
1 AATAATATAAAACAAT-TTAAAATA
*** *
13408800 AAT-ATATAGTGCAACTTAAAATA
1 AATAATATAAAACAATTTAAAATA
13408823 AATAATTTATAAAACAATTTAAAAT-
1 AATAA--TATAAAACAATTTAAAATA
* * *
13408848 AA-CATATAAAA-AGTTCAAAATA
1 AATAATATAAAACAATTTAAAATA
*
13408870 AATAATATGTGAAAAATAAATTTAAAATA
1 AATAATA--T--AAAA-CAATTTAAAATA
* * * *
13408899 AATAATA-AATATATATATATATATA
1 AATAATATAAAACA-ATTTA-AAATA
* * * *
13408924 TATATATATATAACAGTTTAATATA
1 AATA-ATATAAAACAATTTAAAATA
* **
13408949 AGTAATATATGA-AATCTTAAAATA
1 AATAATATAAAACAAT-TTAAAATA
** *
13408973 AATAATAATAAAA-GGTTTACAATA
1 AATAAT-ATAAAACAATTTAAAATA
* * *
13408997 AATAATAAAAAAGAATTTAAATCAGTT
1 AATAATATAAAACAATTTAAA--A-TA
* ** * * * *
13409024 AA-CATATAAAACGGTAT-GACTG
1 AATAATATAAAACAATTTAAAATA
* *
13409046 AATAACATATAA-AATTTAAAATAGA
1 AATAATATAAAACAATTTAAAAT--A
* *
13409071 TAATATATATAAAATAGTTTAAAATA
1 -AATA-ATATAAAACAATTTAAAATA
13409097 AATAACATATAAAA-ATATTTAAAATA
1 AAT-A-ATATAAAACA-ATTTAAAATA
**
13409123 AATAATATGTAAAACTGTTTAAAATA
1 AATAATA--TAAAACAATTTAAAATA
13409149 AA
1 AA
13409151 ATATTTATAT
Statistics
Matches: 365, Mismatches: 89, Indels: 96
0.66 0.16 0.17
Matches are distributed among these distances:
21 8 0.02
22 34 0.09
23 34 0.09
24 81 0.22
25 36 0.10
26 97 0.27
27 36 0.10
28 10 0.03
29 22 0.06
30 7 0.02
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (24 bp):
AATAATATAAAACAATTTAAAATA
Found at i:13408914 original size:2 final size:2
Alignment explanation
Indices: 13408907--13408935 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13408897 TAAATAATAA
13408907 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13408936 ACAGTTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13409015 original size:24 final size:24
Alignment explanation
Indices: 13408969--13409015 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
13408959 GAAATCTTAA
*
13408969 AATAAATAATAATAAAAGGTTTAC
1 AATAAATAATAATAAAAGATTTAC
13408993 AATAAATAATAA-AAAAGAATTTA
1 AATAAATAATAATAAAAG-ATTTA
13409016 AATCAGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (24 bp):
AATAAATAATAATAAAAGATTTAC
Found at i:13409109 original size:51 final size:51
Alignment explanation
Indices: 13408844--13409150 Score: 147
Period size: 48 Copynumber: 6.1 Consensus size: 51
13408834 AAACAATTTA
* * *
13408844 AAATAACATATAAAA-AGTTCAAAATAAATAATATGTGAAAAATAAATTTAAAAT
1 AAATAACATATAAAATA-TTTAAAATAAATAATATAT-AAAAAT--GTTTAAAAT
* * * * * *
13408898 AAAT-A-ATA-AATATATATATATATATATATATATATATAACA-GTTTAATAT
1 AAATAACATATAAAATATTTA-AAATAAATA-ATATATA-AAAATGTTTAAAAT
* * * * * *
13408948 AAGTAATATATGAAAT-CTTAAAATAAATAATA-AT-AAAAGGTTTACAAT
1 AAATAACATATAAAATATTTAAAATAAATAATATATAAAAATGTTTAAAAT
* * ** * ** * * *
13408996 AAAT-A-ATAAAAAAGAATTT-AAATCAGTTAACATATAAAACGGTAT-GACT
1 AAATAACATATAAAA-TATTTAAAAT-AAATAATATATAAAAATGTTTAAAAT
* *
13409045 GAATAACATAT-AAA-ATTTAAAATAGATAATATATATAAAATAGTTTAAAAT
1 AAATAACATATAAAATATTTAAAATAAATAATATATA-AAAAT-GTTTAAAAT
* *
13409096 AAATAACATATAAAAATATTTAAAATAAATAATATGTAAAACTGTTTAAAAT
1 AAATAACATAT-AAAATATTTAAAATAAATAATATATAAAAATGTTTAAAAT
13409148 AAA
1 AAA
13409151 ATATTTATAT
Statistics
Matches: 187, Mismatches: 44, Indels: 46
0.68 0.16 0.17
Matches are distributed among these distances:
46 6 0.03
47 8 0.04
48 31 0.17
49 16 0.09
50 27 0.14
51 28 0.15
52 29 0.16
53 19 0.10
54 23 0.12
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (51 bp):
AAATAACATATAAAATATTTAAAATAAATAATATATAAAAATGTTTAAAAT
Found at i:13409144 original size:52 final size:51
Alignment explanation
Indices: 13408844--13409150 Score: 145
Period size: 50 Copynumber: 6.1 Consensus size: 51
13408834 AAACAATTTA
* * *
13408844 AAATAACATATAAAAAGTTCAAAATAAATAATATGTGA-AAAATAAATTTAAAAT
1 AAATAACATAT-AAAA-TTTAAAATAAATAATATAT-ATAAAAT-AGTTTAAAAT
* * * * * * *
13408898 AAAT-A-ATA-AATATATATATATATATATATATATATATAACAGTTTAATAT
1 AAATAACATATAAAATTTA-AAATAAATA-ATATATATAAAATAGTTTAAAAT
* * * * *
13408948 AAGTAATATATGAAATCTTAAAATAAAT-A-ATA-ATAAAA-GGTTTACAAT
1 AAATAACATATAAAAT-TTAAAATAAATAATATATATAAAATAGTTTAAAAT
* * * * * * * ** * * *
13408996 AAATAATAAAAAAGAATTT-AAATCAGTTA-ACATATAAAACGGTAT-GACT
1 AAATAACATATAA-AATTTAAAATAAATAATATATATAAAATAGTTTAAAAT
* *
13409045 GAATAACATATAAAATTTAAAATAGATAATATATATAAAATAGTTTAAAAT
1 AAATAACATATAAAATTTAAAATAAATAATATATATAAAATAGTTTAAAAT
* *
13409096 AAATAACATATAAAAATATTTAAAATAAATAATATGTA-AAACT-GTTTAAAAT
1 AAATAACATAT--AAA-ATTTAAAATAAATAATATATATAAAATAGTTTAAAAT
13409148 AAA
1 AAA
13409151 ATATTTATAT
Statistics
Matches: 188, Mismatches: 48, Indels: 36
0.69 0.18 0.13
Matches are distributed among these distances:
47 6 0.03
48 26 0.14
49 33 0.18
50 41 0.22
51 22 0.12
52 18 0.10
53 17 0.09
54 25 0.13
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (51 bp):
AAATAACATATAAAATTTAAAATAAATAATATATATAAAATAGTTTAAAAT
Found at i:13409161 original size:54 final size:54
Alignment explanation
Indices: 13409046--13409150 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
13409036 GGTATGACTG
*
13409046 AATAACATAT--AAA-ATTTAAAATAGATAATATATATAAAATAGTTTAAAATA
1 AATAACATATAAAAATATTTAAAATAAATAATATATATAAAATAGTTTAAAATA
* *
13409097 AATAACATATAAAAATATTTAAAATAAATAATATGTA-AAACT-GTTTAAAATA
1 AATAACATATAAAAATATTTAAAATAAATAATATATATAAAATAGTTTAAAATA
13409149 AA
1 AA
13409151 ATATTTATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
51 10 0.21
52 12 0.25
53 7 0.15
54 19 0.40
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (54 bp):
AATAACATATAAAAATATTTAAAATAAATAATATATATAAAATAGTTTAAAATA
Found at i:13413885 original size:19 final size:19
Alignment explanation
Indices: 13413861--13413900 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
13413851 TTCAGTGGAC
13413861 AATTTCAACATATTAAATT
1 AATTTCAACATATTAAATT
13413880 AATTTCAACATATTAAATT
1 AATTTCAACATATTAAATT
13413899 AA
1 AA
13413901 CTAACACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTTCAACATATTAAATT
Found at i:13416809 original size:34 final size:35
Alignment explanation
Indices: 13416766--13416845 Score: 126
Period size: 35 Copynumber: 2.3 Consensus size: 35
13416756 AATGTCACAA
*
13416766 TTCACAACTCAATAT-GGACATACCATACCTACGT
1 TTCACAACTCAATATGGGAAATACCATACCTACGT
**
13416800 TTCACAACTCAATATGGGAAATGTCATACCTACGT
1 TTCACAACTCAATATGGGAAATACCATACCTACGT
13416835 TTCACAACTCA
1 TTCACAACTCA
13416846 GTATAGTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 15 0.36
35 27 0.64
ACGTcount: A:0.35, C:0.28, G:0.10, T:0.28
Consensus pattern (35 bp):
TTCACAACTCAATATGGGAAATACCATACCTACGT
Found at i:13417946 original size:30 final size:29
Alignment explanation
Indices: 13417911--13417975 Score: 89
Period size: 27 Copynumber: 2.3 Consensus size: 29
13417901 AACTGAGCTA
13417911 TTTAATCCTTCTAGCAACTTTTACACCTTT
1 TTTAAT-CTTCTAGCAACTTTTACACCTTT
*
13417941 TTTAA--TTCTAGCAGCTTTTACACCTTT
1 TTTAATCTTCTAGCAACTTTTACACCTTT
*
13417968 TTCAATCT
1 TTTAATCT
13417976 AGTCCTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 25 0.81
29 1 0.03
30 5 0.16
ACGTcount: A:0.23, C:0.25, G:0.05, T:0.48
Consensus pattern (29 bp):
TTTAATCTTCTAGCAACTTTTACACCTTT
Found at i:13417976 original size:26 final size:27
Alignment explanation
Indices: 13417919--13417977 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
13417909 TATTTAATCC
*
13417919 TTCTAGCAACTTTTACACCTTTTTTAA
1 TTCTAGCAACTTTTACACCTTTTTCAA
*
13417946 TTCTAGCAGCTTTTACACCTTTTTCAA
1 TTCTAGCAACTTTTACACCTTTTTCAA
13417973 -TCTAG
1 TTCTAG
13417978 TCCTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 5 0.17
27 25 0.83
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.46
Consensus pattern (27 bp):
TTCTAGCAACTTTTACACCTTTTTCAA
Found at i:13419870 original size:21 final size:21
Alignment explanation
Indices: 13419844--13419885 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
13419834 TCTCGGTTAG
13419844 ATTTT-CTTTCTCTTTTCCTTT
1 ATTTTCCTTTC-CTTTTCCTTT
13419865 ATTTTCCTTTCCTTTTCCTTT
1 ATTTTCCTTTCCTTTTCCTTT
13419886 TCATTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (21 bp):
ATTTTCCTTTCCTTTTCCTTT
Found at i:13419882 original size:11 final size:11
Alignment explanation
Indices: 13419845--13419885 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
13419835 CTCGGTTAGA
13419845 TTTT-CTTTCTC
1 TTTTCCTTTC-C
*
13419856 TTTTCCTTT-A
1 TTTTCCTTTCC
13419866 TTTTCCTTTCC
1 TTTTCCTTTCC
13419877 TTTTCCTTT
1 TTTTCCTTT
13419886 TCATTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 9 0.35
11 13 0.50
12 4 0.15
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTCCTTTCC
Found at i:13419936 original size:26 final size:26
Alignment explanation
Indices: 13419877--13419930 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
13419867 TTTCCTTTCC
*
13419877 TTTTC-CTTTTCATTTTTAATTTAGG
1 TTTTCTCTTTTCATTTTTAATTTAGA
13419902 TTTTCTCTTTTC-TTTTTAGA-TTAGA
1 TTTTCTCTTTTCATTTTTA-ATTTAGA
13419927 TTTT
1 TTTT
13419931 ATTCTTATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.15, C:0.11, G:0.07, T:0.67
Consensus pattern (26 bp):
TTTTCTCTTTTCATTTTTAATTTAGA
Found at i:13421836 original size:2 final size:2
Alignment explanation
Indices: 13421829--13421861 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
13421819 CACCAGATAG
*
13421829 AT AT AT AT AT AT AT AT AT AT AC AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13421862 CATCACCTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13425632 original size:21 final size:21
Alignment explanation
Indices: 13425608--13425664 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
13425598 CTTGAAATAT
* *
13425608 AAACCCAAAACCTAAAACCCC
1 AAACCCTAAATCTAAAACCCC
* * *
13425629 AAACACTAAATCTAGAATCCC
1 AAACCCTAAATCTAAAACCCC
13425650 AAACCCTAAATCTAA
1 AAACCCTAAATCTAA
13425665 TAGTTAGAGC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.51, C:0.33, G:0.02, T:0.14
Consensus pattern (21 bp):
AAACCCTAAATCTAAAACCCC
Found at i:13427052 original size:21 final size:22
Alignment explanation
Indices: 13427023--13427063 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
13427013 AGCACTTATC
*
13427023 AACCCTGAACTC-TAAACCCGT
1 AACCCTGAACCCTTAAACCCGT
*
13427044 AACCTTGAACCCTTAAACCC
1 AACCCTGAACCCTTAAACCC
13427064 CGAAGACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.34, C:0.39, G:0.07, T:0.20
Consensus pattern (22 bp):
AACCCTGAACCCTTAAACCCGT
Found at i:13434803 original size:163 final size:163
Alignment explanation
Indices: 13434527--13434845 Score: 575
Period size: 163 Copynumber: 2.0 Consensus size: 163
13434517 AGTTCTTTCA
* *
13434527 TTTCTCCACTCTTAAAAGCCGATTTTTCTTTATCCTTTCCAACACCATTACTTTCGTTAACCTAT
1 TTTCTACACTCTTAAAAGCAGATTTTTCTTTATCCTTTCCAACACCATTACTTTCGTTAACCTAT
* *
13434592 GGTTTCTCCGTTTATTTCTCTTTCTCCCTCTCATTCAAGAGTGTGATCGCTGGCTAAGTAGTAGT
66 GGCTTCTCCATTTATTTCTCTTTCTCCCTCTCATTCAAGAGTGTGATCGCTGGCTAAGTAGTAGT
13434657 TGATGGAAAATGGAGGTTCTAGCAGAGCTTTTG
131 TGATGGAAAATGGAGGTTCTAGCAGAGCTTTTG
*
13434690 TTTCTACACTCTTAAAAGCAGATTTTTCTTTATCCTTTCCAATACCATTACTTTCGTTAACCTAT
1 TTTCTACACTCTTAAAAGCAGATTTTTCTTTATCCTTTCCAACACCATTACTTTCGTTAACCTAT
*
13434755 GGCTTCTCCATTTATTTCTCTTTCTCCCTCTCATTCTAGAGTGTGATCGCTGGCTAAGTAGTAGT
66 GGCTTCTCCATTTATTTCTCTTTCTCCCTCTCATTCAAGAGTGTGATCGCTGGCTAAGTAGTAGT
*
13434820 TGATGGAAAATGGGGGTTCTAGCAGA
131 TGATGGAAAATGGAGGTTCTAGCAGA
13434846 AAGGTTGGGA
Statistics
Matches: 149, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
163 149 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (163 bp):
TTTCTACACTCTTAAAAGCAGATTTTTCTTTATCCTTTCCAACACCATTACTTTCGTTAACCTAT
GGCTTCTCCATTTATTTCTCTTTCTCCCTCTCATTCAAGAGTGTGATCGCTGGCTAAGTAGTAGT
TGATGGAAAATGGAGGTTCTAGCAGAGCTTTTG
Found at i:13435467 original size:29 final size:28
Alignment explanation
Indices: 13435425--13435514 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 28
13435415 ACATGGCTTG
*
13435425 GAAT-TGATTCGGGCCATATGGGCCATAT
1 GAATGTGATTTGGGCC-TATGGGCCATAT
*
13435453 GAATGTGATTTGGGCCTAATGGGTCATAT
1 GAATGTGATTTGGGCCT-ATGGGCCATAT
*
13435482 -AATGAGA-TTGGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCCTA-TGGGCCATAT
*
13435509 GCATGT
1 GAATGT
13435515 ATGTAGACTT
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
26 1 0.02
27 17 0.33
28 14 0.27
29 20 0.38
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.30
Consensus pattern (28 bp):
GAATGTGATTTGGGCCTATGGGCCATAT
Found at i:13435502 original size:27 final size:27
Alignment explanation
Indices: 13435430--13435509 Score: 90
Period size: 27 Copynumber: 2.8 Consensus size: 27
13435420 GCTTGGAATT
*
13435430 GATTCGGGCCATATGGGCCATATGAATGT
1 GATT-GGGCC-TATGGGCCATATGAATGA
*
13435459 GATTTGGGCCTAATGGGTCATAT-AATGA
1 GA-TTGGGCCT-ATGGGCCATATGAATGA
13435487 GATTGGGCCTAGTGGGCCATATG
1 GATTGGGCCTA-TGGGCCATATG
13435510 CATGTATGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
26 1 0.02
27 17 0.39
28 7 0.16
29 17 0.39
30 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.29
Consensus pattern (27 bp):
GATTGGGCCTATGGGCCATATGAATGA
Found at i:13439621 original size:13 final size:14
Alignment explanation
Indices: 13439590--13439624 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
13439580 AATCACACCC
13439590 TTAAAATTAAAATA
1 TTAAAATTAAAATA
*
13439604 TTAAAATTAAATTA
1 TTAAAATTAAAATA
13439618 -TAAAATT
1 TTAAAATT
13439625 TTTAAAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
TTAAAATTAAAATA
Found at i:13441860 original size:28 final size:29
Alignment explanation
Indices: 13441810--13441866 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
13441800 TTAATTTAAC
* *
13441810 ATCTTCTTCTTTTCTATTTCTTTCTTTTT
1 ATCTTCTTCTTTTATATTTCTTTCGTTTT
13441839 ATCTT-TTCTTTTAT-TTTCCTTTCGTTTT
1 ATCTTCTTCTTTTATATTT-CTTTCGTTTT
13441867 GTCGTTTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 3 0.12
28 17 0.68
29 5 0.20
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.72
Consensus pattern (29 bp):
ATCTTCTTCTTTTATATTTCTTTCGTTTT
Found at i:13443716 original size:47 final size:47
Alignment explanation
Indices: 13443627--13443716 Score: 119
Period size: 47 Copynumber: 1.9 Consensus size: 47
13443617 GGTAAGGTAC
**
13443627 AGATGCCATGTCCTAGACACGGTCTTACACTGGTTCATATCTCAAGT
1 AGATGCCATGTCCTAGACACGGTCTTACACTGACTCATATCTCAAGT
* * *
13443674 AGATGCCATGTCCTAGGCATGGTCTTACATTGACT-ATCATCTC
1 AGATGCCATGTCCTAGACACGGTCTTACACTGACTCAT-ATCTC
13443717 GTAGCCGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
46 2 0.05
47 35 0.95
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (47 bp):
AGATGCCATGTCCTAGACACGGTCTTACACTGACTCATATCTCAAGT
Found at i:13443807 original size:46 final size:47
Alignment explanation
Indices: 13443722--13443847 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 47
13443712 ATCTCGTAGC
* * *
13443722 CGATACATGTCCCAAACATGTCTTACACT-GGCTTACGTCTCGA-GG
1 CGATACATGTCCCAGACATGTCTTACACTAGCCTTACGTCTCAATGG
* *
13443767 CTGATACATGTCCCTGACATGTCTTACACTAGCCTT-CGTCTTAATGG
1 C-GATACATGTCCCAGACATGTCTTACACTAGCCTTACGTCTCAATGG
*
13443814 CGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 CGAT-ACATGTCCCAGACAT-GTCTTACACTAGC
13443848 TCTCACAAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
45 1 0.01
46 35 0.51
47 20 0.29
48 13 0.19
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATACATGTCCCAGACATGTCTTACACTAGCCTTACGTCTCAATGG
Found at i:13447999 original size:30 final size:30
Alignment explanation
Indices: 13447965--13448032 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
13447955 TGAGTCTCAA
13447965 CCGTGTGTGACACACGGTCATGCTGTATGC
1 CCGTGTGTGACACACGGTCATGCTGTATGC
13447995 CCGTGTGTGACACACGGTCATGCTGTATGC
1 CCGTGTGTGACACACGGTCATGCTGTATGC
13448025 CCGTGTGT
1 CCGTGTGT
13448033 CTCCTAGGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.15, C:0.26, G:0.31, T:0.28
Consensus pattern (30 bp):
CCGTGTGTGACACACGGTCATGCTGTATGC
Found at i:13452514 original size:7 final size:6
Alignment explanation
Indices: 13452467--13452513 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
13452457 ATAATTTAAT
* *
13452467 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
13452514 AATATAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:13452553 original size:9 final size:9
Alignment explanation
Indices: 13452531--13452590 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
13452521 TTTTATACAA
13452531 ATAATTCGG
1 ATAATTCGG
* *
13452540 TTAATTTGG
1 ATAATTCGG
13452549 ATAATTCGG
1 ATAATTCGG
*
13452558 GTAATTC-G
1 ATAATTCGG
13452566 ATTAATTC-G
1 A-TAATTCGG
13452575 ATTAATTCGG
1 A-TAATTCGG
*
13452585 TTAATT
1 ATAATT
13452591 TTATACTTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
8 1 0.02
9 40 0.95
10 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.43
Consensus pattern (9 bp):
ATAATTCGG
Found at i:13452570 original size:27 final size:27
Alignment explanation
Indices: 13452532--13452590 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
13452522 TTTATACAAA
* *
13452532 TAATTCGGTTAATTTGGA-TAATTCGGG
1 TAATTCGATTAA-TTCGATTAATTCGGG
*
13452559 TAATTCGATTAATTCGATTAATTCGGT
1 TAATTCGATTAATTCGATTAATTCGGG
13452586 TAATT
1 TAATT
13452591 TTATACTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.14
27 24 0.86
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (27 bp):
TAATTCGATTAATTCGATTAATTCGGG
Found at i:13452582 original size:18 final size:18
Alignment explanation
Indices: 13452532--13452590 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
13452522 TTTATACAAA
*
13452532 TAATTCGGTTAATTTGGA-
1 TAATTCGGTTAA-TTCGAT
*
13452550 TAATTCGGGTAATTCGAT
1 TAATTCGGTTAATTCGAT
* *
13452568 TAATTCGATTAATTCGGT
1 TAATTCGGTTAATTCGAT
13452586 TAATT
1 TAATT
13452591 TTATACTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
17 4 0.11
18 31 0.89
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (18 bp):
TAATTCGGTTAATTCGAT
Found at i:13455601 original size:19 final size:19
Alignment explanation
Indices: 13455570--13455614 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
13455560 ATTTAATGGT
13455570 TATATTTAAATATT-TAAA
1 TATATTTAAATATTCTAAA
*
13455588 TATAGTTTATATATTCTAAA
1 TATA-TTTAAATATTCTAAA
*
13455608 TAAATTT
1 TATATTT
13455615 TATAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 4 0.17
19 12 0.52
20 7 0.30
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (19 bp):
TATATTTAAATATTCTAAA
Found at i:13455616 original size:20 final size:19
Alignment explanation
Indices: 13455574--13455618 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
13455564 AATGGTTATA
* *
13455574 TTTAAATATTTAAATATAG
1 TTTATATATTTAAATAAAG
*
13455593 TTTATATATTCTAAATAAAT
1 TTTATATATT-TAAATAAAG
13455613 TTTATA
1 TTTATA
13455619 AATAATTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (19 bp):
TTTATATATTTAAATAAAG
Found at i:13461421 original size:30 final size:30
Alignment explanation
Indices: 13461385--13461443 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
13461375 TATTTTCTTA
*
13461385 TTAATTTTGATATTATTTTAAAGGCATTTG
1 TTAATTTTGATATCATTTTAAAGGCATTTG
** *
13461415 TTAATTTTTTTATCATTTTAGAGGCATTT
1 TTAATTTTGATATCATTTTAAAGGCATTT
13461444 ACTTGTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.27, C:0.05, G:0.12, T:0.56
Consensus pattern (30 bp):
TTAATTTTGATATCATTTTAAAGGCATTTG
Found at i:13470489 original size:32 final size:32
Alignment explanation
Indices: 13470403--13470474 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
13470393 GGCCAGGCTG
* * *
13470403 TGTGGACCACATGGCCAAGGCCAATTTGGGCA
1 TGTGGGCCACACGGCTAAGGCCAATTTGGGCA
* *
13470435 TGTGTGCCACACGGCTAAGGCCAATTTGGGCG
1 TGTGGGCCACACGGCTAAGGCCAATTTGGGCA
13470467 TGTGGGCC
1 TGTGGGCC
13470475 TATACGGGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.19, C:0.25, G:0.35, T:0.21
Consensus pattern (32 bp):
TGTGGGCCACACGGCTAAGGCCAATTTGGGCA
Found at i:13478054 original size:5 final size:5
Alignment explanation
Indices: 13478044--13478073 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
13478034 GAAAAAAATC
13478044 TTATT TTATT TTATT TTATT TTGATT TTAT
1 TTATT TTATT TTATT TTATT TT-ATT TTAT
13478074 ATTAAATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:13480523 original size:16 final size:17
Alignment explanation
Indices: 13480499--13480531 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13480489 AAAACACAAG
13480499 TTTAATGGA-AAGAAAA
1 TTTAATGGAGAAGAAAA
*
13480515 TTTATTGGAGAAGAAAA
1 TTTAATGGAGAAGAAAA
13480532 GAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.27
Consensus pattern (17 bp):
TTTAATGGAGAAGAAAA
Found at i:13486854 original size:79 final size:79
Alignment explanation
Indices: 13486698--13486920 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 79
13486688 CCGAATGATG
* * * *
13486698 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATT
*
13486762 TATGCGAGTTACTAAA
64 GATGCGAGTTACTAAA
*
13486778 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT-CCGGGCTAAGACCCGAAGGCATT
*
13486841 GGTGCGAGTTACTAAA
64 GATGCGAGTTACTAAA
* * * * *
13486857 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATT
13486921 TGAACGAGTA
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 69 0.55
80 47 0.38
81 8 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGACCCGAAGGCATTGA
TGCGAGTTACTAAA
Found at i:13486886 original size:40 final size:40
Alignment explanation
Indices: 13486698--13486922 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
13486688 CCGAATGATG
* * *
13486698 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
13486738 TCCGGACTAAGAT-CCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
13486778 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
13486817 TCCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 T-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
13486857 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
13486898 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
13486923 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 35 0.21
40 121 0.73
41 9 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:13486921 original size:119 final size:120
Alignment explanation
Indices: 13486699--13486922 Score: 287
Period size: 119 Copynumber: 1.9 Consensus size: 120
13486689 CGAATGATGT
* *
13486699 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTA
1 CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTA
*
13486764 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
66 TGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
* * **
13486819 CCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
* * *
13486881 TGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TATGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
13486923 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.78
120 18 0.20
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTA
TGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATC
Found at i:13486944 original size:79 final size:78
Alignment explanation
Indices: 13486705--13486955 Score: 246
Period size: 79 Copynumber: 3.2 Consensus size: 78
13486695 ATGTCCGGGC
* * *
13486705 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTT-ATGC
1 TAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACCGGGCTAAG-TCCCGAAGGCATTTGA-GC
*
13486767 GAGTTACTAAATCCGGAC
62 GAGTTACTAAATCCGG-T
* * *
13486785 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATCCCGGGCTAAG-CCCGAAGGCATTGGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGAGCG
13486847 AGTTACTAAATCCGGGT
63 AGTTACTAAATCC-GGT
* *
13486864 TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
*
13486929 -TAGCTATATCCGGT
65 TTA-CTAAATCCGGT
* *
13486943 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
13486956 TACGTGATTC
Statistics
Matches: 145, Mismatches: 15, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
78 1 0.01
79 81 0.56
80 54 0.37
81 9 0.06
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
TACTAAATCCGGT
Found at i:13495442 original size:10 final size:10
Alignment explanation
Indices: 13495427--13495459 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
13495417 GGAAAGAAAA
*
13495427 GAGGAAGATT
1 GAGGAAGATC
13495437 GAGGAAGATC
1 GAGGAAGATC
13495447 GAGGAAGATC
1 GAGGAAGATC
13495457 GAG
1 GAG
13495460 ATGACGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.39, C:0.06, G:0.42, T:0.12
Consensus pattern (10 bp):
GAGGAAGATC
Found at i:13504489 original size:210 final size:209
Alignment explanation
Indices: 13504177--13504979 Score: 1045
Period size: 210 Copynumber: 3.9 Consensus size: 209
13504167 TAAGCCGCAG
13504177 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * * *
13504242 TGTATTTGGCGGGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGAA
66 TGTATTCGACGAGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
** *
13504307 AATCTAAGATGATTTGTCGCCTCTGTATTGTCAGAGAACAAATCGAAGTCTGACATTTCCACTAT
131 AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACT-T
13504372 GATGAAGGGCAGACA
195 GATGAAGGGCAGACA
* *
13504387 CATAGCAGATCTCACCTGCAGATGTTTACGCTGAAGCAGATCCAAGATGACAAATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* *
13504452 TGTATTCGGCGAGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
66 TGTATTCGACGAGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
* * *
13504517 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAAAATAAATCGAAGTCTGGCATTTCCACTTT
131 AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCAC-TT
*
13504582 GATGGAA-GGCAGACG
195 GAT-GAAGGGCAGACA
* *
13504597 CATAGCAGATCTCACCTTCAGATGTTTACGCAGAAGCAAATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * *
13504662 TGTATTCGACGGGGAGCAGATCGAAGATATAGCTGATTTTACTTTCATGTG-TTACGATGAAGCA
66 TGTATTCGACGAGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
* * * *
13504726 AATCTAAGATGATTTGTCATCTCTGTATTGTCGGAGAACAAATCAAAGTCTGGCATCTCTACTTC
131 AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTT-
* * *
13504791 AAT-AGAGAGCAGATA
195 GATGA-AGGGCAGACA
* * * * ** *
13504806 CATAGCAGATCTGACCTTCAGACGATTA-GACTGAAACAAGATCCAAGATGATTTG-GC--AT-T
1 CATAGCAGATCTCACCTTCAGATGTTTACG-CTGAAGC-AGATCCAAGATGA-CAGATCTTATCT
* * * * * * * * *
13504866 CT-TGTGCTT--ACAAGGAGCAAATCAAAGACATAGTTGATTT-AGTTTTCACGTGCTTATGATG
63 CTCTGT-ATTCGACGAGGAGCAGATCGAAGATATAGCTGATTTGA-CTTTCACGTGTTTACGATG
13504927 AAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAG
126 AAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAG
13504980 AAGTAGATTT
Statistics
Matches: 530, Mismatches: 52, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
204 1 0.00
205 33 0.06
206 61 0.12
207 6 0.01
208 6 0.01
209 105 0.20
210 313 0.59
211 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (209 bp):
CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
TGTATTCGACGAGGAGCAGATCGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCA
AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTG
ATGAAGGGCAGACA
Found at i:13525866 original size:53 final size:53
Alignment explanation
Indices: 13525784--13525900 Score: 173
Period size: 53 Copynumber: 2.2 Consensus size: 53
13525774 AGGTGCAGGG
*
13525784 GACACACGGCCTAACCACATGCTCGTGTACCAGACCATG-TGTCACACACGGTTTA
1 GACACAC-G-CTAACCACACGCTCGTGTACCAGACCATGAT-TCACACACGGTTTA
*
13525839 GACACACGCTAACCACACGCTCGTGTACCAGGCCATGATTCACACACGGTTTA
1 GACACACGCTAACCACACGCTCGTGTACCAGACCATGATTCACACACGGTTTA
*
13525892 GACGCACGC
1 GACACACGC
13525901 CCGTGTGTCT
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
53 49 0.84
54 2 0.03
55 7 0.12
ACGTcount: A:0.27, C:0.34, G:0.21, T:0.18
Consensus pattern (53 bp):
GACACACGCTAACCACACGCTCGTGTACCAGACCATGATTCACACACGGTTTA
Found at i:13535375 original size:24 final size:24
Alignment explanation
Indices: 13535348--13535398 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
13535338 CAAGAACACC
* *
13535348 TCAAATTGCCATTCATTTTTTTAA
1 TCAAATTCCCATTCAATTTTTTAA
* * *
13535372 TCAATTTCCCCTTTAATTTTTTAA
1 TCAAATTCCCATTCAATTTTTTAA
13535396 TCA
1 TCA
13535399 GTATGGTAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.02, T:0.51
Consensus pattern (24 bp):
TCAAATTCCCATTCAATTTTTTAA
Found at i:13542001 original size:16 final size:16
Alignment explanation
Indices: 13541980--13542010 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13541970 GACATGAAAT
*
13541980 AAAGAAAGGAAAAAAA
1 AAAGAAAAGAAAAAAA
13541996 AAAGAAAAGAAAAAA
1 AAAGAAAAGAAAAAA
13542011 CATAATAAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAGAAAAGAAAAAAA
Found at i:13547762 original size:49 final size:50
Alignment explanation
Indices: 13547702--13547842 Score: 133
Period size: 49 Copynumber: 2.9 Consensus size: 50
13547692 ACTGGCTAGC
* * * *
13547702 ATATCAAAGTCGATGCCATGTCCCATACAGATCTTACACTGACTT-TTAT
1 ATATCGAAGTCGATGCCATGTCCCAAACAGGTCTTACACTGACTTCTCAT
* * * * * *
13547751 ATATCGAAGTCGATGTCGTATCCTAGACAGGTCTTACACTG-GTTCTCAT
1 ATATCGAAGTCGATGCCATGTCCCAAACAGGTCTTACACTGACTTCTCAT
* ** * *
13547800 CTATCGGTGTCAATGCCATGTCCCAAACAGGTCTTACATTGAC
1 ATATCGAAGTCGATGCCATGTCCCAAACAGGTCTTACACTGAC
13547843 ATACAACAAG
Statistics
Matches: 70, Mismatches: 20, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
48 2 0.03
49 68 0.97
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (50 bp):
ATATCGAAGTCGATGCCATGTCCCAAACAGGTCTTACACTGACTTCTCAT
Found at i:13547962 original size:46 final size:45
Alignment explanation
Indices: 13547904--13548026 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 45
13547894 TCTCGAGGCT
13547904 GATACATGTCCCAGACATGTCTTACACTAGCTCT-AGTCTCAA-T-GCC
1 GATACATGTCCCAGACATGTCTTACACTAGCTCTCA---T-AAGTGGCC
* *
13547950 GATACATGTCCCAAACATGTCTTACACTGGCTCTCATAATGTGGCC
1 GATACATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGGCC
*
13547996 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATACATGTCCCAGACATGTCTTACACTAGC
13548027 ACATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 63 0.93
47 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (45 bp):
GATACATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCC
Found at i:13567556 original size:16 final size:16
Alignment explanation
Indices: 13567535--13567568 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13567525 CCAATATCCA
* *
13567535 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
13567551 ATTATCACATTTACAC
1 ATTATCACATTTACAC
13567567 AT
1 AT
13567569 ATATTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:13571119 original size:19 final size:19
Alignment explanation
Indices: 13571090--13571132 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
13571080 ATGCAAGCAA
*
13571090 CAAGGTTAACCGAATGCTC
1 CAAGCTTAACCGAATGCTC
*
13571109 TAAGCTTAACCGAATGCTC
1 CAAGCTTAACCGAATGCTC
13571128 CAAGC
1 CAAGC
13571133 CTTCTTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.21
Consensus pattern (19 bp):
CAAGCTTAACCGAATGCTC
Found at i:13574945 original size:44 final size:47
Alignment explanation
Indices: 13574776--13575044 Score: 171
Period size: 49 Copynumber: 5.7 Consensus size: 47
13574766 TGGGGTAACT
* * * * *
13574776 GCCGATGCCATGTCCCCGACATGGTCTTACATTGGCTATCATCATCGT-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-A-CATC-GCTTAG
* * *
13574825 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTC-TCGCATATCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATCGC-T-T--AG
** * *
13574875 GTTGATGCCATGTCCCAGA-GTGGTCTTACACTAACACATCGCTTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATCGCTTAG
* * *
13574920 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTC-GAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC--ACATCGCTTAG
* * * * * *
13574966 GTCGATG-CATGTCCCAAACAT-ATCTTACACTAGCAC-TTGTATCTAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATCG-CT-TAG
*
13575012 GCCGATGCCATGTCCCAGACATGGTTTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
13575045 GGCTCTCATA
Statistics
Matches: 171, Mismatches: 34, Indels: 31
0.72 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 24 0.14
45 8 0.05
46 46 0.27
47 15 0.09
48 9 0.05
49 47 0.27
50 21 0.12
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATCGCTTAG
Found at i:13574977 original size:46 final size:48
Alignment explanation
Indices: 13574776--13575087 Score: 195
Period size: 46 Copynumber: 6.6 Consensus size: 48
13574766 TGGGGTAACT
* * *
13574776 GCCGATGCCATGTCCCCGACATGGTCTTACATTGGC-TATCATCATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATC-TCGAG
* * * * * *
13574825 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGCATATCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTCGAG
** * ** * *
13574875 GTTGATGCCATGTCCCAGA-GTGGTCTTACACTAAC--ACATCGCTTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-GAG
13574920 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAG
* * * * ** *
13574966 GTCGATG-CATGTCCCAAACAT-ATCTTACACTAGCACTTGTATCT--AT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTTACATCTCGAG
* * *
13575012 GCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCT-CATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAG
*
13575060 GCCGATG-CATGTCCCAAACAT-GTCTTAC
1 GCCGATGCCATGTCCCAGACATGGTCTTAC
13575088 TAGCTCCCAA
Statistics
Matches: 205, Mismatches: 43, Indels: 33
0.73 0.15 0.12
Matches are distributed among these distances:
44 22 0.11
45 11 0.05
46 52 0.25
47 30 0.15
48 22 0.11
49 45 0.22
50 19 0.09
51 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAG
Found at i:13587001 original size:18 final size:18
Alignment explanation
Indices: 13586939--13587002 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
13586929 GCTCTGGTGA
*
13586939 GCTTCAGTTAGCCTTTGG
1 GCTTCAGTTAGACTTTGG
* *
13586957 GCTTCCGTTTAGCACTTATGT
1 GCTTCAG-TTAG-ACTT-TGG
13586978 GCTTCAGTTAGACTTTGG
1 GCTTCAGTTAGACTTTGG
13586996 GCTTCAG
1 GCTTCAG
13587003 ATCATGATGA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
18 15 0.39
19 8 0.21
20 7 0.18
21 8 0.21
ACGTcount: A:0.14, C:0.22, G:0.25, T:0.39
Consensus pattern (18 bp):
GCTTCAGTTAGACTTTGG
Found at i:13601999 original size:5 final size:5
Alignment explanation
Indices: 13601981--13602114 Score: 54
Period size: 5 Copynumber: 27.2 Consensus size: 5
13601971 TCTTTGTATT
*
13601981 TTATA TTATAA TTATA TTAT- TATATA CTAT- TTATA TTATA TT-TA TT-TA
1 TTATA TTAT-A TTATA TTATA T-TATA TTATA TTATA TTATA TTATA TTATA
* * * * *
13602029 CTATATA TTAT- TTTTCA -CAAA TTAGTA TTATT TTACA TTATTA TT-TA
1 -T-TATA TTATA TTAT-A TTATA TTA-TA TTATA TTATA TTA-TA TTATA
* *
13602076 -TATA ATATTA TTATA TTGTA TTAT- TTATA -TATA TTATA T
1 TTATA TTA-TA TTATA TTATA TTATA TTATA TTATA TTATA T
13602115 ATTATTTTTA
Statistics
Matches: 97, Mismatches: 15, Indels: 34
0.66 0.10 0.23
Matches are distributed among these distances:
3 1 0.01
4 26 0.27
5 50 0.52
6 18 0.19
7 2 0.02
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (5 bp):
TTATA
Found at i:13602016 original size:30 final size:29
Alignment explanation
Indices: 13601980--13602041 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
13601970 ATCTTTGTAT
*
13601980 TTTATATTATAATTATATTATTATATACTA
1 TTTATATTATAATTAT-TTACTATATACTA
* *
13602010 TTTATATTATATTTATTTACTATATATTA
1 TTTATATTATAATTATTTACTATATACTA
13602039 TTT
1 TTT
13602042 TTCACAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTATATTATAATTATTTACTATATACTA
Found at i:13602030 original size:22 final size:23
Alignment explanation
Indices: 13601984--13602120 Score: 64
Period size: 20 Copynumber: 6.2 Consensus size: 23
13601974 TTGTATTTTA
13601984 TATTATAATTATATTATTATATAC
1 TATTAT-ATTATATTATTATATAC
*
13602008 TATTTATATTATA-T-TTATTTAC
1 TA-TTATATTATATTATTATATAC
*
13602030 TA-TATATTAT-TT-TTCACA-A-
1 TATTATATTATATTATT-ATATAC
*
13602049 -ATTAGTATTATTTTACATTAT-TA-
1 TATTA-TATTATATT--ATTATATAC
* **
13602072 T-TTATATAATATTATTATATTG
1 TATTATATTATATTATTATATAC
*
13602094 TATTAT-TTATATATATTATATAT
1 TATTATATTATAT-TATTATATAC
13602117 TATT
1 TATT
13602121 TTTACATATA
Statistics
Matches: 88, Mismatches: 10, Indels: 31
0.68 0.08 0.24
Matches are distributed among these distances:
18 1 0.01
19 2 0.02
20 23 0.26
21 4 0.05
22 22 0.25
23 22 0.25
24 10 0.11
25 4 0.05
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (23 bp):
TATTATATTATATTATTATATAC
Found at i:13602038 original size:36 final size:36
Alignment explanation
Indices: 13601963--13602039 Score: 88
Period size: 36 Copynumber: 2.1 Consensus size: 36
13601953 TCGCATAATG
*
13601963 ATTATATATCTTTGTATTTTATATTATAATTATATT
1 ATTATATATCTTTGTATATTATATTATAATTATATT
*
13601999 ATTATATA-CTATT-TATATTATATT-TATTTACTATAT
1 ATTATATATCT-TTGTATATTATATTATAATTA-TAT-T
13602035 ATTAT
1 ATTAT
13602040 TTTTCACAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
34 5 0.14
35 15 0.42
36 16 0.44
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (36 bp):
ATTATATATCTTTGTATATTATATTATAATTATATT
Found at i:13602086 original size:27 final size:26
Alignment explanation
Indices: 13602054--13602131 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 26
13602044 CACAAATTAG
*
13602054 TATTATTTTACAT-TATTATTTATATAA
1 TATTATTATA-ATGTATTATTTATAT-A
*
13602081 TATTATTATATTGTATTATTTATATA
1 TATTATTATAATGTATTATTTATATA
*
13602107 TATTA-TAT-AT-TATT-TTTACATA
1 TATTATTATAATGTATTATTTATATA
13602129 TAT
1 TAT
13602132 ACTTTCATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
22 10 0.22
23 4 0.09
24 1 0.02
25 3 0.07
26 7 0.15
27 21 0.46
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (26 bp):
TATTATTATAATGTATTATTTATATA
Found at i:13602089 original size:13 final size:13
Alignment explanation
Indices: 13602067--13602120 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
13602057 TATTTTACAT
13602067 TATTATTTATATAA
1 TATTA-TTATATAA
**
13602081 TATTATTATATTG
1 TATTATTATATAA
13602094 TATTATT-TAT-A
1 TATTATTATATAA
*
13602105 TA-TATTATATAT
1 TATTATTATATAA
13602117 TATT
1 TATT
13602121 TTTACATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
10 4 0.12
11 5 0.15
12 5 0.15
13 14 0.42
14 5 0.15
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
TATTATTATATAA
Found at i:13602168 original size:48 final size:49
Alignment explanation
Indices: 13602054--13602170 Score: 116
Period size: 50 Copynumber: 2.4 Consensus size: 49
13602044 CACAAATTAG
* * * *
13602054 TATTATTTTACATTATTATTTATATAATATTATTATATTGTATTATTTA
1 TATTATTTTAAATTATTATTTACATAATATTATCATATTATATTATTTA
* *
13602103 TATATATTATATATTATT-TTTACATATATACTT-TCATATTATA-TA-TTA
1 TAT-TATTTTAAATTATTATTTACATA-ATA-TTATCATATTATATTATTTA
13602151 TAATTATTTTAAATTATTAT
1 T-ATTATTTTAAATTATTAT
13602171 GTCATTTTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
48 16 0.29
49 15 0.27
50 23 0.41
51 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (49 bp):
TATTATTTTAAATTATTATTTACATAATATTATCATATTATATTATTTA
Found at i:13602218 original size:14 final size:13
Alignment explanation
Indices: 13601982--13602215 Score: 60
Period size: 11 Copynumber: 18.6 Consensus size: 13
13601972 CTTTGTATTT
13601982 TATATTATA-AT-
1 TATATTATATATA
13601993 TATATTAT-TATA
1 TATATTATATATA
13602005 TACTATT-TATAT-
1 TA-TATTATATATA
*
13602017 TATATTTATTTACTA
1 TATA-TTATATA-TA
* *
13602032 TATATTATTTTTCA
1 TATATTATATAT-A
* *
13602046 CAAATTAGTAT-TA
1 TATATTA-TATATA
*
13602059 T-T-TTACAT-TA
1 TATATTATATATA
13602069 T-TATT-TATATA
1 TATATTATATATA
13602080 -ATATTAT-TATA
1 TATATTATATATA
* *
13602091 TTGTATTATTTATA
1 -TATATTATATATA
13602105 TATATTATATAT-
1 TATATTATATATA
* *
13602117 TAT-TTTTACATA
1 TATATTATATATA
13602129 TATACTT-TCATATTA
1 TATA-TTAT-ATA-TA
13602144 TATATTATA-AT-
1 TATATTATATATA
* *
13602155 TATTTTAAAT-TA
1 TATATTATATATA
* *
13602167 T-TATGTCATTTTTCA
1 TATAT-T-ATATAT-A
*
13602182 TACCATTATATATA
1 TA-TATTATATATA
*
13602196 TATATT-TATCTA
1 TATATTATATATA
13602208 TATATTAT
1 TATATTAT
13602216 TATTAAAAGT
Statistics
Matches: 166, Mismatches: 25, Indels: 62
0.66 0.10 0.25
Matches are distributed among these distances:
10 8 0.05
11 43 0.26
12 28 0.17
13 36 0.22
14 29 0.17
15 19 0.11
16 1 0.01
17 2 0.01
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.57
Consensus pattern (13 bp):
TATATTATATATA
Found at i:13606252 original size:14 final size:16
Alignment explanation
Indices: 13606233--13606264 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
13606223 CGATATCCTT
13606233 TTTGCA-CTCAT-GCA
1 TTTGCATCTCATAGCA
13606247 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
13606263 TT
1 TT
13606265 CCATCGCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 5 0.31
16 5 0.31
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.41
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:13614654 original size:206 final size:208
Alignment explanation
Indices: 13614270--13614821 Score: 749
Period size: 206 Copynumber: 2.7 Consensus size: 208
13614260 GCAGATCTGG
* * *
13614270 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACGTAGAT
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
* *
13614335 GATTTGGCTTTCACGTGGTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAA
66 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
** * ****** * ***
13614400 AGAACAAATCGAAGTTTGGCGTCTCCATATTTGGTGGAGAGCAGACACATAGCAGATCTGGCCTT
131 AGAACAAATAAAAGTTTAGCGTCTCCATATTCAACAAAGAGAAGACACATAGCAGATCCCACCTT
*
13614465 CATATG-TTT-AT
196 CAGATGATTTCAT
*
13614476 ACTGAAGC-GGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAG
1 -CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAG
*
13614539 CTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTTGCATCTCTGTATTGTC
64 CTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
* * *
13614604 AGAGAACAAATAAAAGTTTAGTGTCTTCATATTCAACAAAGGGAAGACACATAGCAGATCCCACC
129 AGAGAACAAATAAAAGTTTAGCGTCTCCATATTCAACAAAGAGAAGACACATAGCAGATCCCACC
13614669 TTCAGATGATTTCAT
194 TTCAGATGATTTCAT
* *
13614684 -TGAAGCAAGATCCAAGATGGTTTGGTATCCTTGTGCTTT-CAAGGAACAAATCGAAGACATAGC
1 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTG-TTTACAAGGAACAAATCGAAGACATAGC
* * * *
13614747 TGATTTGGTTTTCGA-GTGCTTACGCTAAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTC
65 TGATTTGGCTTTC-ACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
13614811 AGAGAACAAAT
129 AGAGAACAAAT
13614822 CGAAGAAGCA
Statistics
Matches: 306, Mismatches: 32, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
205 1 0.00
206 173 0.57
207 125 0.41
208 7 0.02
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (208 bp):
CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATAAAAGTTTAGCGTCTCCATATTCAACAAAGAGAAGACACATAGCAGATCCCACCTT
CAGATGATTTCAT
Found at i:13614837 original size:43 final size:44
Alignment explanation
Indices: 13614789--13614871 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
13614779 AATCTAAGAT
13614789 GATTTGGAATCTCTGTATT-GTCAGAGAACAAATCGAAGAAGCA
1 GATTTGGAATCTCTGTATTCGTCAGAGAACAAATCGAAGAAGCA
** * * * *
13614832 GATTTGGCGTCTCTGTGTTCGTCGGAGAGCAGATCGAAGA
1 GATTTGGAATCTCTGTATTCGTCAGAGAACAAATCGAAGA
13614872 TATCAATATG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 16 0.48
44 17 0.52
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (44 bp):
GATTTGGAATCTCTGTATTCGTCAGAGAACAAATCGAAGAAGCA
Found at i:13616676 original size:3 final size:3
Alignment explanation
Indices: 13616668--13616792 Score: 55
Period size: 3 Copynumber: 40.3 Consensus size: 3
13616658 ATTATAACTA
*
13616668 TAT TAT TAT ATAT TAT T-T ATAT TAT TAT TAT TATT TAC TA- TAT TAT
1 TAT TAT TAT -TAT TAT TAT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* * * * * *
13616714 TTT TCACA AAT TAA TAT TAT T-T TA- CAT TAT TATT TAT ATAA TAT TAT
1 TAT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT -TAT TAT TAT
13616761 TA- TAT TAT TAT T-T ATAT ATAT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT -TAT -TAT TAT -TAT TAT T
13616793 TTTACATATA
Statistics
Matches: 94, Mismatches: 13, Indels: 30
0.69 0.09 0.22
Matches are distributed among these distances:
2 9 0.10
3 64 0.68
4 21 0.22
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:13616676 original size:19 final size:20
Alignment explanation
Indices: 13616652--13616714 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 20
13616642 TATATCTTTG
13616652 TATTATATTA-TAACTATAT
1 TATTATATTATTAACTATAT
**
13616671 TATTATA-TATTATTTATAT
1 TATTATATTATTAACTATAT
*
13616690 TATTATTATTATTTACTATAT
1 TATTA-TATTATTAACTATAT
13616711 TATT
1 TATT
13616715 TTTCACAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 2 0.06
19 19 0.53
20 2 0.06
21 13 0.36
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTATATTATTAACTATAT
Found at i:13616681 original size:21 final size:20
Alignment explanation
Indices: 13616655--13616714 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 20
13616645 ATCTTTGTAT
13616655 TATATTATAACTATATTATTA
1 TATATTAT-ACTATATTATTA
*
13616676 TATATTAT-TTATATTATTA
1 TATATTATACTATATTATTA
13616695 T-TATTATTTACTATATTATT
1 TATATTA--TACTATATTATT
13616715 TTTCACAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 5 0.15
19 11 0.32
20 1 0.03
21 17 0.50
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
TATATTATACTATATTATTA
Found at i:13616757 original size:27 final size:26
Alignment explanation
Indices: 13616725--13616784 Score: 88
Period size: 25 Copynumber: 2.3 Consensus size: 26
13616715 TTTCACAAAT
13616725 TAATATTATTTTACATTATTATTTATA
1 TAATATTA-TTTACATTATTATTTATA
*
13616752 TAATATTA-TTATATTATTATTTATA
1 TAATATTATTTACATTATTATTTATA
13616777 T-ATATTAT
1 TAATATTAT
13616785 ATATTATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 6 0.19
25 17 0.55
27 8 0.26
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (26 bp):
TAATATTATTTACATTATTATTTATA
Found at i:13616766 original size:35 final size:36
Alignment explanation
Indices: 13616686--13616769 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 36
13616676 TATATTATTT
*
13616686 ATATTATTATTATTA-TTTACTATATTATTTTTCACA
1 ATATTATTA-TATTATTTTACTATATTATTTATCACA
*
13616722 A-ATTA--ATATTATTTTAC-ATTATTATTTAT-ATA
1 ATATTATTATATTATTTTACTA-TATTATTTATCACA
13616754 ATATTATTATATTATT
1 ATATTATTATATTATT
13616770 ATTTATATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
32 9 0.22
33 19 0.46
35 12 0.29
36 1 0.02
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (36 bp):
ATATTATTATATTATTTTACTATATTATTTATCACA
Found at i:13616801 original size:20 final size:20
Alignment explanation
Indices: 13616706--13616801 Score: 67
Period size: 20 Copynumber: 4.9 Consensus size: 20
13616696 TATTATTTAC
*
13616706 TATATTATTTTTCACAAATTA
1 TATATTATTTTT-ACATATTA
13616727 -ATATTA-TTTTACATTATTA
1 TATATTATTTTTACA-TATTA
* ** *
13616746 TTTA-TA-TAATA-TTATTA
1 TATATTATTTTTACATATTA
* *
13616763 TATTATTATTTATATATATTA
1 TA-TATTATTTTTACATATTA
13616784 TATATTATTTTTACATAT
1 TATATTATTTTTACATAT
13616802 ATACTTTCAT
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
17 6 0.10
18 5 0.08
19 15 0.25
20 26 0.44
21 7 0.12
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (20 bp):
TATATTATTTTTACATATTA
Found at i:13616839 original size:48 final size:47
Alignment explanation
Indices: 13616727--13616842 Score: 121
Period size: 48 Copynumber: 2.4 Consensus size: 47
13616717 TCACAAATTA
* * *
13616727 ATATTATTTTACATTATTATTTATATAATATTATTATATTATTATTT
1 ATATTATTTTAAATTATTATTTACATAATATTATCATATTATTATTT
* *
13616774 ATATATATTATATATTATT-TTTACATATATACTT-TCATATTA-TATATT
1 ATAT-TATTTTAAATTATTATTTACATA-ATA-TTATCATATTATTAT-TT
13616822 ATAATTATTTTAAATTATTAT
1 AT-ATTATTTTAAATTATTAT
13616843 GTCATTTTTC
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
47 14 0.25
48 38 0.67
49 5 0.09
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (47 bp):
ATATTATTTTAAATTATTATTTACATAATATTATCATATTATTATTT
Found at i:13624373 original size:18 final size:19
Alignment explanation
Indices: 13624336--13624373 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
13624326 CTAGTATCCC
*
13624336 ATTATCTTTCCATTAAGCT
1 ATTATCTTTCCATGAAGCT
*
13624355 ATTATGTTTCC-TGAAGCT
1 ATTATCTTTCCATGAAGCT
13624373 A
1 A
13624374 AGATGTGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (19 bp):
ATTATCTTTCCATGAAGCT
Found at i:13636899 original size:26 final size:26
Alignment explanation
Indices: 13636861--13636918 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
13636851 CATGAAATTC
13636861 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
13636887 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
13636913 TTATCA
1 TTATCA
13636919 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:13640054 original size:23 final size:23
Alignment explanation
Indices: 13640028--13640074 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
13640018 TGATAATACC
* *
13640028 TACCGCATAGGTTGGTCCAACTA
1 TACCACATAGGTCGGTCCAACTA
13640051 TACCACATAGGTCGGTCCAACTA
1 TACCACATAGGTCGGTCCAACTA
13640074 T
1 T
13640075 CATATGATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (23 bp):
TACCACATAGGTCGGTCCAACTA
Found at i:13648333 original size:29 final size:28
Alignment explanation
Indices: 13648299--13648401 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
13648289 TACTCAATCA
*
13648299 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
13648328 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
13648357 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
13648386 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
13648402 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:13656339 original size:29 final size:28
Alignment explanation
Indices: 13656305--13656407 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
13656295 TACTCAATCA
*
13656305 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
13656334 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
13656363 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
13656392 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
13656408 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:13662750 original size:29 final size:28
Alignment explanation
Indices: 13662716--13662818 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
13662706 TACTCAATCA
*
13662716 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
13662745 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
13662774 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
13662803 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
13662819 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:13665951 original size:13 final size:13
Alignment explanation
Indices: 13665933--13665957 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13665923 TTGTCATAGC
13665933 TTTCAATTTTGAG
1 TTTCAATTTTGAG
13665946 TTTCAATTTTGA
1 TTTCAATTTTGA
13665958 AACTGATCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.56
Consensus pattern (13 bp):
TTTCAATTTTGAG
Found at i:13670136 original size:18 final size:19
Alignment explanation
Indices: 13670097--13670134 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
13670087 ATTTAAAATG
*
13670097 TAATTTATGATTTTATTTT
1 TAATTAATGATTTTATTTT
13670116 TAATTAATGATTTTATTTT
1 TAATTAATGATTTTATTTT
13670135 AAAATGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (19 bp):
TAATTAATGATTTTATTTT
Found at i:13672090 original size:22 final size:22
Alignment explanation
Indices: 13672042--13672090 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
13672032 AGACCCCATT
13672042 TCTCATTCACTCATCATCCCTC
1 TCTCATTCACTCATCATCCCTC
*
13672064 ACTCATTCA-TCATTC-TCTCCTC
1 TCTCATTCACTCA-TCATC-CCTC
13672086 TCTCA
1 TCTCA
13672091 ACTCTCTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.18, C:0.43, G:0.00, T:0.39
Consensus pattern (22 bp):
TCTCATTCACTCATCATCCCTC
Found at i:13676448 original size:20 final size:21
Alignment explanation
Indices: 13676405--13676450 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
13676395 ACTGTTTTGT
13676405 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
13676425 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
13676444 TATGGGC
1 TATGGGC
13676451 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:13678573 original size:12 final size:13
Alignment explanation
Indices: 13678555--13678609 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
13678545 ATAAAATATG
13678555 ATATTTAATAATA
1 ATATTTAATAATA
13678568 AT-TTTAA-AATA
1 ATATTTAATAATA
* *
13678579 GTATTTAATATACA
1 ATATTTAATA-ATA
*
13678593 ATATATAATATATA
1 ATATTTAATA-ATA
13678607 ATA
1 ATA
13678610 ACAAAAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 5 0.15
12 10 0.29
13 3 0.09
14 16 0.47
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:13678767 original size:21 final size:23
Alignment explanation
Indices: 13678709--13678767 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
13678699 AAATTATATT
*
13678709 TATA-ATAAAATAA-TTATATAA
1 TATATATAAAATAAGTTATAGAA
13678730 TATATATAAATATAAGTT-TAGAA
1 TATATATAAA-ATAAGTTATAGAA
13678753 TA-ATATAAAATAAGT
1 TATATATAAAATAAGT
13678768 AATTAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
TATATATAAAATAAGTTATAGAA
Found at i:13678927 original size:26 final size:26
Alignment explanation
Indices: 13678896--13678965 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
13678886 ACCTTTAATG
*
13678896 ATAATAATATATAGATAAAAAAATAT
1 ATAATAATATATAAATAAAAAAATAT
* * * *
13678922 ATAATAGTATAAAAATAATATAATAT
1 ATAATAATATATAAATAAAAAAATAT
*
13678948 AAAATAA-ATATAATATAA
1 ATAATAATATATAA-ATAA
13678966 TATGAAAGTA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
25 5 0.14
26 30 0.86
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (26 bp):
ATAATAATATATAAATAAAAAAATAT
Found at i:13678928 original size:19 final size:19
Alignment explanation
Indices: 13678902--13678959 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
13678892 AATGATAATA
13678902 ATAT-ATAGATAAAAAAAT
1 ATATAATAGATAAAAAAAT
*
13678920 ATATAATAG-TATAAAAAT
1 ATATAATAGATAAAAAAAT
13678938 AATATAAT--ATAAAATAAAT
1 -ATATAATAGATAAAA-AAAT
13678957 ATA
1 ATA
13678960 ATATAATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
18 19 0.56
19 15 0.44
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
ATATAATAGATAAAAAAAT
Found at i:13678939 original size:14 final size:15
Alignment explanation
Indices: 13678933--13678965 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
13678923 TAATAGTATA
13678933 AAAATAATATAATAT
1 AAAATAATATAATAT
13678948 AAAATAAATATAATAT
1 AAAAT-AATATAATAT
13678964 AA
1 AA
13678966 TATGAAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAATAATATAATAT
Found at i:13678940 original size:37 final size:37
Alignment explanation
Indices: 13678898--13679057 Score: 123
Period size: 37 Copynumber: 4.2 Consensus size: 37
13678888 CTTTAATGAT
*
13678898 AATAATATATAGATAAAAAAATATATAATAGTATAAA
1 AATAATATATAGATAAAAAAATATATAATAATATAAA
* *
13678935 AATAATATA-ATATAAAATAAATATA-ATATAATATGAA
1 AATAATATATAGATAAAA-AAATATATA-ATAATATAAA
* *
13678972 AGT-ATATAT-G-TAAAAATAATATATAATATATATAATT
1 AATAATATATAGATAAAAA-AATATATAATA-ATATAA-A
* * *
13679009 AATAAATATATTATACAAGTAAAAATATAATAATAATATATA
1 AAT-AATATA-TAGATAA--AAAAATAT-ATAATAATATAAA
13679051 AATAATA
1 AATAATA
13679058 ACGTAAAATA
Statistics
Matches: 96, Mismatches: 12, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
34 1 0.01
35 14 0.15
36 19 0.20
37 28 0.29
39 5 0.05
40 1 0.01
41 4 0.04
42 5 0.05
43 10 0.10
44 9 0.09
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.34
Consensus pattern (37 bp):
AATAATATATAGATAAAAAAATATATAATAATATAAA
Found at i:13678946 original size:5 final size:5
Alignment explanation
Indices: 13678936--13679048 Score: 55
Period size: 5 Copynumber: 22.6 Consensus size: 5
13678926 TAGTATAAAA
* *
13678936 ATAAT ATAAT ATAAA ATAAAT ATAAT ATAAT ATGAAAGT ATATAT GTAA-
1 ATAAT ATAAT ATAAT AT-AAT ATAAT ATAAT AT--AA-T ATA-AT ATAAT
*
13678985 A-AAT A-ATAT ATAAT AT-AT ATAAT -TAAT A-AAT ATATT ATACA- AGTAA-
1 ATAAT ATA-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT A-TAAT
13679031 A-AAT ATAAT AATAAT ATA
1 ATAAT ATAAT -ATAAT ATA
13679049 TAAATAATAA
Statistics
Matches: 86, Mismatches: 6, Indels: 32
0.69 0.05 0.26
Matches are distributed among these distances:
3 4 0.05
4 15 0.17
5 45 0.52
6 16 0.19
7 3 0.03
8 3 0.03
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (5 bp):
ATAAT
Found at i:13678954 original size:21 final size:21
Alignment explanation
Indices: 13678899--13678968 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
13678889 TTTAATGATA
*
13678899 ATAATATATAGATAAAAA-AAT
1 ATAATATA-AAATAAAAATAAT
**
13678920 AT-ATAATAGTATAAAAATAAT
1 ATAAT-ATAAAATAAAAATAAT
*
13678941 ATAATATAAAATAAATATAAT
1 ATAATATAAAATAAAAATAAT
13678962 ATAATAT
1 ATAATAT
13678969 GAAAGTATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
20 9 0.22
21 30 0.73
22 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
ATAATATAAAATAAAAATAAT
Found at i:13679019 original size:41 final size:44
Alignment explanation
Indices: 13678941--13679058 Score: 102
Period size: 46 Copynumber: 2.6 Consensus size: 44
13678931 TAAAAATAAT
* *
13678941 ATAATATAAAATAAATATAATATAATATGAAAGTATA-TAT-GTAAAA
1 ATAATATATAATATATATAAT-T-A-AT-AAAGTATATTATAGTAAAA
13678987 ATAATATATAATATATATAATTAATAAA-TATATTATACAAGTAAAA
1 ATAATATATAATATATATAATTAATAAAGTATATTAT---AGTAAAA
*
13679033 AT-ATA-ATAATAATATATAAATAATAA
1 ATAATATATAAT-ATATATAATTAATAA
13679059 CGTAAAATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
41 4 0.06
42 6 0.10
43 2 0.03
44 6 0.10
45 18 0.29
46 27 0.43
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (44 bp):
ATAATATATAATATATATAATTAATAAAGTATATTATAGTAAAA
Found at i:13679044 original size:54 final size:54
Alignment explanation
Indices: 13678930--13679132 Score: 143
Period size: 54 Copynumber: 3.7 Consensus size: 54
13678920 ATATAATAGT
* * * *
13678930 ATAAAAATAATATAATATAA-AATAAATATAATATAATATGAAAGTATATATGTA
1 ATAATAAT-ATATAATATAATAATAAATATAATATAATATGAAAGTAAAAATATA
* * *
13678984 AAAATAATATATAATATATATAATTAATA-AATATATTAT-ACAAGTAAAAATATA
1 ATAATAATATATAATATA-ATAATAAATATAATATAATATGA-AAGTAAAAATATA
* * *
13679038 ATAATAATATATAA-ATAATAACGTAAA-ATAATAATATTTCGTGAAAAGT-AATATATA
1 ATAATAATATATAATATAATAA--TAAATATAAT-ATA-AT-ATG-AAAGTAAAAATATA
*
13679095 ATAAATAATA-ATAATATAAATAATATATAATAA-ATAAT
1 AT-AATAATATATAATAT-AATAATAAAT-ATAATATAAT
13679133 TATATAATAT
Statistics
Matches: 120, Mismatches: 13, Indels: 30
0.74 0.08 0.18
Matches are distributed among these distances:
52 4 0.03
53 15 0.12
54 45 0.38
55 10 0.08
56 3 0.03
57 20 0.17
58 13 0.11
59 10 0.08
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (54 bp):
ATAATAATATATAATATAATAATAAATATAATATAATATGAAAGTAAAAATATA
Found at i:13679053 original size:19 final size:19
Alignment explanation
Indices: 13678896--13679148 Score: 78
Period size: 19 Copynumber: 13.2 Consensus size: 19
13678886 ACCTTTAATG
*
13678896 ATAATAATATATAGATA-A
1 ATAATAATATATAAATATA
13678914 A-AA-AATATAT-AATAGT-
1 ATAATAATATATAAATA-TA
*
13678930 ATAAAAATA-ATATAATATA
1 ATAATAATATATA-AATATA
13678949 A-AATAA-ATAT-AATATA
1 ATAATAATATATAAATATA
* *
13678965 AT-ATGAA-AGTATATATGTA
1 ATAAT-AATA-TATAAATATA
*
13678984 AAAATAATATAT-AATAT-
1 ATAATAATATATAAATATA
13679001 AT-ATAAT-TAATAAATAT-
1 ATAATAATAT-ATAAATATA
* *
13679018 ATTATACA-AGTAAAAATATA
1 ATAATA-ATA-TATAAATATA
13679038 ATAATAATATATAAATAATA
1 ATAATAATATATAAAT-ATA
*
13679058 ACGTAA-AATA-ATAATATTTCGTGA
1 A--TAATAATATATAA-A--T-AT-A
*
13679082 A-AAGTAATATATAATAAATA
1 ATAA-TAATATATAA-ATATA
13679102 ATAATAATATAAATAATATATA
1 ATAATAATAT--ATAA-ATATA
13679124 ATAAATAATTATATAATATATA
1 AT-AATAA-TATATAA-ATATA
13679146 ATA
1 ATA
13679149 TAAAAATAAG
Statistics
Matches: 182, Mismatches: 16, Indels: 71
0.68 0.06 0.26
Matches are distributed among these distances:
15 4 0.02
16 24 0.13
17 18 0.10
18 21 0.12
19 30 0.16
20 26 0.14
21 11 0.06
22 26 0.14
23 11 0.06
24 11 0.06
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (19 bp):
ATAATAATATATAAATATA
Found at i:13679149 original size:7 final size:7
Alignment explanation
Indices: 13679086--13679150 Score: 78
Period size: 7 Copynumber: 9.0 Consensus size: 7
13679076 TCGTGAAAAG
13679086 TAATATA
1 TAATATA
*
13679093 TAATAAA
1 TAATATA
13679100 TAATA-A
1 TAATATA
13679106 TAATATAAA
1 TAATAT--A
13679115 TAATATA
1 TAATATA
*
13679122 TAATAAA
1 TAATATA
13679129 TAATTATA
1 TAA-TATA
13679137 TAATATA
1 TAATATA
13679144 TAATATA
1 TAATATA
13679151 AAAATAAGGT
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
6 6 0.12
7 32 0.63
8 6 0.12
9 7 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
TAATATA
Found at i:13679149 original size:29 final size:28
Alignment explanation
Indices: 13678898--13679150 Score: 107
Period size: 29 Copynumber: 8.8 Consensus size: 28
13678888 CTTTAATGAT
* *
13678898 AATAATATATAGATAAAAAAATATATAATA
1 AATAATA-ATA-ATATAATAATATATAATA
* *
13678928 GTATAAAAATAATATAAT-ATA-A-AATA
1 -AATAATAATAATATAATAATATATAATA
* *
13678954 AAT-ATAATATAATATGAA-AGTATATATGTA
1 AATAAT-A-ATAATAT-AATAATATATA-ATA
*
13678984 AA-AATAAT-ATATAAT-ATATATAATT
1 AATAATAATAATATAATAATATATAATA
* * *
13679009 AATAAATATATTATACAAGTAAAAATATAAT-
1 AAT-AATA-ATAATATAA-T-AATATATAATA
** *
13679040 AATAATATATAA-ATAATAACGTAAAAT-
1 AATAATA-ATAATATAATAATATATAATA
* ** *
13679067 AATAATATTTCGTGAAAAGTAATATATAATA
1 AATAATA-ATAAT-ATAA-TAATATATAATA
13679098 AATAATAATAATATAAATAATATATAATA
1 AATAATAATAATAT-AATAATATATAATA
13679127 AATAATTATATAATAT-ATAATATA
1 AATAA-TA-ATAATATAATAATATA
13679151 AAAATAAGGT
Statistics
Matches: 170, Mismatches: 29, Indels: 48
0.69 0.12 0.19
Matches are distributed among these distances:
24 1 0.01
25 6 0.04
26 19 0.11
27 29 0.17
28 9 0.05
29 44 0.26
30 32 0.19
31 22 0.13
32 8 0.05
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (28 bp):
AATAATAATAATATAATAATATATAATA
Found at i:13679214 original size:20 final size:19
Alignment explanation
Indices: 13678910--13679217 Score: 92
Period size: 20 Copynumber: 15.8 Consensus size: 19
13678900 TAATATATAG
13678910 ATAAAA-AAATATATAATA
1 ATAAAATAAATATATAATA
* *
13678928 GTATAA-AAATAATATAAT-
1 ATAAAATAAAT-ATATAATA
13678946 ATAAAATAAATATA-ATATA
1 ATAAAATAAATATATA-ATA
* * *
13678965 ATATGAAAGTATATATGTAAAA
1 ATA--AAA-TAAATATATAATA
*
13678987 ATAATATATAATATAT-ATA
1 ATAAAATA-AATATATAATA
*
13679006 AT-TAATAAATATAT--T-
1 ATAAAATAAATATATAATA
* *
13679021 ATACAAGTAAAAATATAATA
1 ATA-AAATAAATATATAATA
13679041 ATAATATATAAATA-ATAACGTA
1 ATAA-A-ATAAATATATAA--TA
* *
13679063 A-AATAATAATATTTCGTGAA-A
1 ATAA-AATAA-ATAT-AT-AATA
* *
13679084 AGTAATATATAATAAATAATA
1 A-TAAAATA-AATATATAATA
*
13679105 ATAATATAAATA-ATATATA
1 ATAAAATAAATATATA-ATA
*
13679124 AT-AAATAATTATATAATA
1 ATAAAATAAATATATAATA
* *
13679142 TATAATATAAA-A-ATAAGGTT
1 -ATAAAATAAATATATAA--TA
* *
13679162 A-AAAATAAAACAAATAATA
1 ATAAAAT-AAATATATAATA
* *
13679181 ATAAATTTATATATATAATA
1 ATAAA-ATAAATATATAATA
13679201 ATAGAAATAAATATATA
1 ATA-AAATAAATATATA
13679218 GGGTTAGATT
Statistics
Matches: 215, Mismatches: 37, Indels: 74
0.66 0.11 0.23
Matches are distributed among these distances:
15 2 0.01
16 1 0.00
17 17 0.08
18 41 0.19
19 43 0.20
20 59 0.27
21 26 0.12
22 19 0.09
23 5 0.02
24 2 0.01
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (19 bp):
ATAAAATAAATATATAATA
Found at i:13681205 original size:206 final size:205
Alignment explanation
Indices: 13680795--13681346 Score: 865
Period size: 206 Copynumber: 2.7 Consensus size: 205
13680785 AAATCTGCTT
* *
13680795 CTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * *
13680860 GTGAAAGCCAAATCAACTATGTCTTCGATTTGTTCCTTGAAAGCACAAGAATGCCAAATCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
** ** * * * *
13680925 GGATCTTGTTTCAGTGAAATTATCTGAAGGTGAGATCTATTATGTGTCTACTCTCCGTTGAAATA
131 GGATC-TACTTCAGTGAAAACATCTGAAGGTGAGATCTACTACGTGTCTACCCTCCGTCGAAATA
13680990 GAGATGCCAGA
195 GAGATGCCAGA
*
13681001 CTTCGATTTGTTCTCTGACAATGCAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
13681066 GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
13681131 GGATCTACTTCAGT-ATAAACATCTGAATGGTG-GATCTGCTACGTGTCTGCCCTCCGTCGAAGT
131 GGATCTACTTCAGTGA-AAACATCTGAA-GGTGAGATCTACTACGTGTCTACCCTCCGTCGAAAT
* *
13681194 GGAGAATGCCAGG
194 AGAG-ATGCCAGA
13681207 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
13681272 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
13681337 GGATCTACTT
131 GGATCTACTT
13681347 TAACCAGATC
Statistics
Matches: 321, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
204 1 0.00
205 43 0.13
206 277 0.86
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTACTTCAGTGAAAACATCTGAAGGTGAGATCTACTACGTGTCTACCCTCCGTCGAAATAG
AGATGCCAGA
Found at i:13682257 original size:10 final size:10
Alignment explanation
Indices: 13682242--13682269 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
13682232 CCTCTCCTTT
13682242 TTTTTTTTTC
1 TTTTTTTTTC
13682252 TTTTTTTTTC
1 TTTTTTTTTC
13682262 TTTTTTTT
1 TTTTTTTT
13682270 ATCTCAAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:13690908 original size:65 final size:64
Alignment explanation
Indices: 13690832--13690960 Score: 213
Period size: 65 Copynumber: 2.0 Consensus size: 64
13690822 CATATAATGA
13690832 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACATAAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACAT-AAGCAT
* * * *
13690897 CACATTTAGTTAGGAGCATTTGATTTATTTCAATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACATAAGCAT
13690961 AGATACATGA
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
64 6 0.10
65 54 0.90
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTGACATAAGCAT
Found at i:13691255 original size:45 final size:45
Alignment explanation
Indices: 13691073--13691256 Score: 110
Period size: 45 Copynumber: 4.1 Consensus size: 45
13691063 TGAAGATTGT
13691073 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGC
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGC
* * * * * * * **
13691118 GGATCTAGGCTT-CCTGATATTGTAGTGAAGCGGATTTAAG-C--C
1 AGATCT-TGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGC
* * * * * * * * ** *
13691160 ACCATCCTAG-CTCCCT-AAAGTTGTAGTGGAGTAGGTTGAAGATTGT
1 A-GAT-CTTGTTTCCCTGAGA-TTGCAGTGGAGCAGATCGAAGACGGC
13691206 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGC
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGC
13691251 AGATCT
1 AGATCT
13691257 AGGTTTCCTG
Statistics
Matches: 97, Mismatches: 32, Indels: 20
0.65 0.21 0.13
Matches are distributed among these distances:
42 4 0.04
43 22 0.23
44 6 0.06
45 59 0.61
46 6 0.06
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (45 bp):
AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGC
Found at i:13691302 original size:133 final size:133
Alignment explanation
Indices: 13691061--13691326 Score: 451
Period size: 133 Copynumber: 2.0 Consensus size: 133
13691051 GGGGCAACAA
*
13691061 GTTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGGATCTAG
1 GTTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCAGATCTAG
* * ** *
13691126 GCTTCCTGATATTGTAGTGAAGCGGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAG
66 GCTTCCTGATATTGCAGCGAAGCAAATTTAAGCCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
13691191 TAG
131 TAG
13691194 GTTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCAGATCTAG
1 GTTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCAGATCTAG
* * *
13691259 GTTTCCTGATGTTGCAGCGAAGCAAATTTAAGTCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
66 GCTTCCTGATATTGCAGCGAAGCAAATTTAAGCCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
13691324 TAG
131 TAG
13691327 ACCCAAGATT
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
133 124 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (133 bp):
GTTGAAGATTGTAGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCAGATCTAG
GCTTCCTGATATTGCAGCGAAGCAAATTTAAGCCACCACCCTAGCTCCCTAAAGTTGTAGTGGAG
TAG
Found at i:13691410 original size:44 final size:44
Alignment explanation
Indices: 13691360--13691494 Score: 176
Period size: 44 Copynumber: 3.2 Consensus size: 44
13691350 CCAGTGGAGT
*
13691360 AGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGC
* * *
13691404 AGATC------AA-AGATTTGGCGTATCTGTAGCTGCAGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGC
*
13691441 AGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGC
1 AGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGC
13691485 AGATCGAAGA
1 AGATCGAAGA
13691495 CGGTGAATCT
Statistics
Matches: 77, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 32 0.42
38 2 0.03
43 2 0.03
44 41 0.53
ACGTcount: A:0.30, C:0.16, G:0.32, T:0.21
Consensus pattern (44 bp):
AGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGC
Found at i:13691427 original size:37 final size:37
Alignment explanation
Indices: 13691374--13691494 Score: 134
Period size: 37 Copynumber: 3.1 Consensus size: 37
13691364 CAAAGATAAC
13691374 AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAA
1 AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAA
* * *
13691411 AGATTTGGCGTATCTGTAGCTGCAGAGAGCAGATCGAAGATAA
1 AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATC------AA
* *
13691454 CAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
1 -AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAA
13691492 AGA
1 AGA
13691495 CGGTGAATCT
Statistics
Matches: 69, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
37 35 0.51
38 1 0.01
43 2 0.03
44 31 0.45
ACGTcount: A:0.27, C:0.17, G:0.34, T:0.22
Consensus pattern (37 bp):
AGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCAA
Found at i:13694807 original size:132 final size:132
Alignment explanation
Indices: 13694555--13694807 Score: 284
Period size: 132 Copynumber: 1.9 Consensus size: 132
13694545 AAAGGTGATA
* *
13694555 TTCGATATTTGACAATTCGAGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCA
1 TTCGATATTCGACAATTCGAGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTGGCTCA
* ** * * * *
13694620 AAACAATCAAATGTCCCTCTGGAATTCCATTCATGTATTCTAAAAACTCTTTAAAATAAAAGTAA
66 AAACAACCAAATCCCCCTCTAGAATTCCACTCATGTATTCTAAAAAATCTCTAAAATAAAAGTAA
13694685 TG
131 TG
* * *
13694687 TTCGATGTTCGACAATTC-AGAGAATCGTGCCCTATCGTGCTGGGTTGCAATTTC-CTGTTGGTT
1 TTCGATATTCGACAATTCGAG-GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTC-GTTGGCT
* *
13694750 CAAAATAACCGAACA-CCCCCTTTAGAATTTCC-CTCATGT-TTCTTAAAAAAT-TCTAAAA
64 CAAAACAACC-AA-ATCCCCCTCTAGAA-TTCCACTCATGTATTC-TAAAAAATCTCTAAAA
13694808 AAGAGATAAT
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
131 3 0.03
132 70 0.69
133 23 0.23
134 5 0.05
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (132 bp):
TTCGATATTCGACAATTCGAGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTGGCTCA
AAACAACCAAATCCCCCTCTAGAATTCCACTCATGTATTCTAAAAAATCTCTAAAATAAAAGTAA
TG
Found at i:13696145 original size:6 final size:6
Alignment explanation
Indices: 13696115--13696155 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
13696105 GGGAAAACAA
* * *
13696115 GCATAG GCCTAG GCATAA GCGTAG GCATAG GCATAG GCATA
1 GCATAG GCATAG GCATAG GCATAG GCATAG GCATAG GCATA
13696156 AGGAGATGAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.32, C:0.20, G:0.32, T:0.17
Consensus pattern (6 bp):
GCATAG
Found at i:13699664 original size:18 final size:17
Alignment explanation
Indices: 13699641--13699683 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
13699631 ATAATTATAT
13699641 ATTTTAATGA-TATAATAA
1 ATTTTAAT-ATTATAAT-A
13699659 ATTTTAATATTTATAATA
1 ATTTTAATA-TTATAATA
13699677 ATTTTAA
1 ATTTTAA
13699684 ATCTTAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.04
18 16 0.70
19 6 0.26
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
ATTTTAATATTATAATA
Found at i:13699791 original size:23 final size:23
Alignment explanation
Indices: 13699765--13699814 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
13699755 TTAGTATTAA
13699765 ATTTTA-TAGTATAATATATGAAT
1 ATTTTACTAGTATAA-ATATGAAT
* *
13699788 ATTTTACTATTATAAATATGAGT
1 ATTTTACTAGTATAAATATGAAT
13699811 ATTT
1 ATTT
13699815 GTTTAATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (23 bp):
ATTTTACTAGTATAAATATGAAT
Found at i:13700053 original size:157 final size:156
Alignment explanation
Indices: 13699856--13700317 Score: 589
Period size: 156 Copynumber: 3.0 Consensus size: 156
13699846 TCTAACTCCA
* * * *
13699856 ATGTGCTATTATGCACTCCCGCATATGTAATATATG-AAGGTCAAATTAAGTTTTAATTAAGAAT
1 ATGTGCTACTATCCACTCTCACATATGTAATATATGTAAGGTCAAATTAAGTTTTAATTAAG-AT
* *
13699920 TTTTTATTATTAAGATTATATAATTTATTATTTATTATAAAATATGATCTTATTA-AAACAT-AA
65 TTTTT-TTATTAAGATTATATAAATTATTAATTATTATAAAATATGATCTTATTATAAA-ATAAA
* ** *
13699983 TTTCGGTTGCCGCGGTGAAATACTTCTAT
128 TTTCGATTGCCGCAATGAAATACTTCGAT
* **
13700012 ATGTGCTACTATCCACTCTCACATATGAAACGTATGTAAGGTCAAATTAAGTTTTAATTAAGATT
1 ATGTGCTACTATCCACTCTCACATATGTAATATATGTAAGGTCAAATTAAGTTTTAATTAAGATT
*
13700077 TTTTGTTATTAAGATTATATAAAATGA-TAATTATTATAAAATATGATCTTATTATAAAATAAAT
66 TTTT-TTATTAAGATTATAT-AAATTATTAATTATTATAAAATATGATCTTATTATAAAATAAAT
**
13700141 TTCGATTTTCGCAATGAAATACTTCGAT
129 TTCGATTGCCGCAATGAAATACTTCGAT
* * * *
13700169 ATGTGCTACTATCCA--CTCACATATGTAATATATGTAAGGTCAAATTTAGCTTCAATTAATATT
1 ATGTGCTACTATCCACTCTCACATATGTAATATATGTAAGGTCAAATTAAGTTTTAATTAAGATT
* *
13700232 GTTTTTATTAAGTTTATATAAGA-TATTAATTATTATAAAA-ATGATCTTATTATAAAATAAATT
66 TTTTTTATTAAGATTATATAA-ATTATTAATTATTATAAAATATGATCTTATTATAAAATAAATT
* * *
13700295 TCAATTTCCACAATGAAATACTT
130 TCGATTGCCGCAATGAAATACTT
13700318 TTATAATATT
Statistics
Matches: 270, Mismatches: 30, Indels: 15
0.86 0.10 0.05
Matches are distributed among these distances:
153 46 0.17
154 29 0.11
155 44 0.16
156 79 0.29
157 72 0.27
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (156 bp):
ATGTGCTACTATCCACTCTCACATATGTAATATATGTAAGGTCAAATTAAGTTTTAATTAAGATT
TTTTTTATTAAGATTATATAAATTATTAATTATTATAAAATATGATCTTATTATAAAATAAATTT
CGATTGCCGCAATGAAATACTTCGAT
Found at i:13700114 original size:19 final size:18
Alignment explanation
Indices: 13700090--13700137 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
13700080 TGTTATTAAG
13700090 ATTATATAAA-ATGATAATT
1 ATTATA-AAATATGAT-ATT
*
13700109 ATTATAAAATATGATCTT
1 ATTATAAAATATGATATT
13700127 ATTATAAAATA
1 ATTATAAAATA
13700138 AATTTCGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 16 0.59
19 11 0.41
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (18 bp):
ATTATAAAATATGATATT
Found at i:13701380 original size:18 final size:18
Alignment explanation
Indices: 13701340--13701382 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
13701330 GGGAAAACAA
* * *
13701340 GCATAGGCATATGCATAT
1 GCATAAGCATAAGCATAG
*
13701358 TCATAAGCATAAGCATAG
1 GCATAAGCATAAGCATAG
13701376 GCATAAG
1 GCATAAG
13701383 GAGATGACAC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (18 bp):
GCATAAGCATAAGCATAG
Found at i:13709992 original size:20 final size:21
Alignment explanation
Indices: 13709970--13710019 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
13709960 AGGTTTGGAG
13709970 TTTAGGGTTTAAGG-TC-AGTG
1 TTTAGGGTTTAAGGATCAAG-G
* *
13709990 TTTAAGGTTTAGGGATCAAGG
1 TTTAGGGTTTAAGGATCAAGG
13710011 TTTAGGGTT
1 TTTAGGGTT
13710020 CAAGATTCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 12 0.48
21 11 0.44
22 2 0.08
ACGTcount: A:0.22, C:0.04, G:0.34, T:0.40
Consensus pattern (21 bp):
TTTAGGGTTTAAGGATCAAGG
Found at i:13710012 original size:14 final size:14
Alignment explanation
Indices: 13709993--13710023 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
13709983 GTCAGTGTTT
13709993 AAGGTTTAGGGATC
1 AAGGTTTAGGGATC
*
13710007 AAGGTTTAGGGTTC
1 AAGGTTTAGGGATC
13710021 AAG
1 AAG
13710024 ATTCAGGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.35, T:0.29
Consensus pattern (14 bp):
AAGGTTTAGGGATC
Found at i:13712627 original size:28 final size:28
Alignment explanation
Indices: 13712595--13712650 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
13712585 ATACCTAAGT
13712595 ATGTATCAAAACAAAATGCAAAAACATG
1 ATGTATCAAAACAAAATGCAAAAACATG
*
13712623 ATGTATCAAAGCAAAATGCAAAAACATG
1 ATGTATCAAAACAAAATGCAAAAACATG
13712651 TCAACTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.55, C:0.14, G:0.12, T:0.18
Consensus pattern (28 bp):
ATGTATCAAAACAAAATGCAAAAACATG
Found at i:13725263 original size:16 final size:18
Alignment explanation
Indices: 13725237--13725273 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
13725227 AAAATCAACC
*
13725237 TTTTTATCTTTCTTTC-T
1 TTTTTATCTTTATTTCAT
13725254 TTTTTA-CTTTATTTCAT
1 TTTTTATCTTTATTTCAT
13725271 TTT
1 TTT
13725274 AATTTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTATCTTTATTTCAT
Found at i:13725279 original size:20 final size:20
Alignment explanation
Indices: 13725256--13725293 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
13725246 TTCTTTCTTT
13725256 TTTACTTTAT-TTCATTTTAA
1 TTTA-TTTATCTTCATTTTAA
*
13725276 TTTATTTTTCTTCATTTT
1 TTTATTTATCTTCATTTT
13725294 TTCTTATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTATTTATCTTCATTTTAA
Found at i:13728258 original size:40 final size:40
Alignment explanation
Indices: 13728097--13728273 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 40
13728087 TGAATGATAC
* * * *
13728097 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
13728137 CC-GGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * *
13728176 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
13728216 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
13728256 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
13728274 TACGTGACTC
Statistics
Matches: 116, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 3 0.03
39 44 0.38
40 66 0.57
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:13732333 original size:27 final size:27
Alignment explanation
Indices: 13732302--13732367 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
13732292 CGAACTATCC
*
13732302 CGTGTTTAATGTC-CTATTAGACCATCAT
1 CGTGTTTAATGTCTC-ATTAAACCATC-T
*
13732330 -GTGTTTAATGTCTCATTAAACTATCT
1 CGTGTTTAATGTCTCATTAAACCATCT
13732356 CGTGTTTAATGT
1 CGTGTTTAATGT
13732368 TCTGTCAGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 1 0.03
27 32 0.94
28 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (27 bp):
CGTGTTTAATGTCTCATTAAACCATCT
Found at i:13732530 original size:45 final size:43
Alignment explanation
Indices: 13732481--13732586 Score: 122
Period size: 45 Copynumber: 2.4 Consensus size: 43
13732471 TATTTCAATC
* ** *
13732481 ATGGTTTTACTCATTTACGTCATGACACCATAGCATCTTTTAGCA
1 ATGGTCTTACTCATTTA--TCATGACACCATAGCATCTCATAACA
* *
13732526 ATGGTCTTACTCATCCTTATCATGACGCCATAGCATCTCATAACT
1 ATGGTCTTACTCAT--TTATCATGACACCATAGCATCTCATAACA
13732571 ATGGTCTTACTCATTT
1 ATGGTCTTACTCATTT
13732587 TCGGCACATA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
43 2 0.04
45 48 0.91
47 3 0.06
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (43 bp):
ATGGTCTTACTCATTTATCATGACACCATAGCATCTCATAACA
Found at i:13733921 original size:17 final size:17
Alignment explanation
Indices: 13733862--13733921 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
13733852 CAATAAATTT
13733862 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
13733881 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
13733895 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
13733913 AAAATATAA
1 AAAATATAA
13733922 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:13734441 original size:18 final size:18
Alignment explanation
Indices: 13734405--13734548 Score: 211
Period size: 18 Copynumber: 7.9 Consensus size: 18
13734395 AATCATATCT
*
13734405 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
13734424 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
13734442 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
13734459 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
13734477 TCTAAGATTGCAATTATA
1 TCTAAGATTGCAATCATA
*
13734495 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
13734512 TCTAAGATTGCATATCATA
1 TCTAAGATTGCA-ATCATA
13734531 TCTAAGATTGCAGATCAT
1 TCTAAGATTGCA-ATCAT
13734549 TGAAGATTAT
Statistics
Matches: 114, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
17 31 0.27
18 49 0.43
19 34 0.30
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:13734463 original size:35 final size:36
Alignment explanation
Indices: 13734405--13734548 Score: 213
Period size: 35 Copynumber: 4.0 Consensus size: 36
13734395 AATCATATCT
13734405 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
13734442 TCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
* *
13734477 TCTAAGATTGCA-ATTATATCTAAGATTG-TATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
13734512 TCTAAGATTGCATATCATATCTAAGATTGCAGATCAT
1 TCTAAGATTG-ATATCATATCTAAGATTGCA-ATCAT
13734549 TGAAGATTAT
Statistics
Matches: 98, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
35 53 0.54
36 30 0.31
37 10 0.10
38 5 0.05
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.38
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Done.