Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 62 of 425
Found at i:17160338 original size:27 final size:26
Alignment explanation
Indices: 17160286--17160338 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17160276 AATCTGGTAC
*
17160286 TTAAAAATCAGAATTCGAGTAGATTT
1 TTAAAAATCAGAATTCGAGTACATTT
* *
17160312 TTAAAAATTAGAATTTGAGTACCATTT
1 TTAAAAATCAGAATTCGAGTA-CATTT
17160339 AGCTTTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.38
Consensus pattern (26 bp):
TTAAAAATCAGAATTCGAGTACATTT
Found at i:17171797 original size:68 final size:70
Alignment explanation
Indices: 17171725--17171922 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
17171715 ACACCCTGTA
* * * *
17171725 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
17171787 ATAAAT
65 ATAAAT
*
17171793 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
17171858 ATAAAT
65 ATAAAT
*
17171864 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
17171923 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:17171836 original size:41 final size:41
Alignment explanation
Indices: 17171791--17171908 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
17171781 TGAAAGATAA
17171791 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
17171832 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
17171862 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
17171903 ATGTAG
1 ATGTAG
17171909 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:17171848 original size:71 final size:71
Alignment explanation
Indices: 17171759--17171922 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
17171749 GAGATGTATC
17171759 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
17171824 AGGACA
66 AGGACA
17171830 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
17171895 AGGACA
66 AGGACA
17171901 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
17171923 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:17179365 original size:68 final size:70
Alignment explanation
Indices: 17179293--17179490 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
17179283 ACACCCTGTA
* * * *
17179293 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
17179355 ATAAAT
65 ATAAAT
*
17179361 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
17179426 ATAAAT
65 ATAAAT
*
17179432 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
17179491 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:17179404 original size:41 final size:41
Alignment explanation
Indices: 17179359--17179476 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
17179349 TGAAAGATAA
17179359 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
17179400 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
17179430 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
17179471 ATGTAG
1 ATGTAG
17179477 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:17179416 original size:71 final size:71
Alignment explanation
Indices: 17179327--17179490 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
17179317 GAGATGTATC
17179327 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
17179392 AGGACA
66 AGGACA
17179398 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
17179463 AGGACA
66 AGGACA
17179469 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
17179491 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:17190853 original size:16 final size:18
Alignment explanation
Indices: 17190820--17190856 Score: 51
Period size: 16 Copynumber: 2.1 Consensus size: 18
17190810 GTTTTTAAAA
17190820 TATTAAAAAATTCATTAAT
1 TATTAAAAAATT-ATTAAT
17190839 TATT-AAAAATT-TTAAT
1 TATTAAAAAATTATTAAT
17190855 TA
1 TA
17190857 GATCTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
18 7 0.39
19 4 0.22
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTAAAAAATTATTAAT
Found at i:17191812 original size:25 final size:25
Alignment explanation
Indices: 17191784--17191852 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 25
17191774 TTATTTTCTT
* *
17191784 ACTTTGGTCTTAATTTTTTTTTGTC
1 ACTTTGGTCTTAATTTTGTTTTATC
* *
17191809 ACTTTAGTTTTAATTATTGTTTTATC
1 ACTTTGGTCTTAATT-TTGTTTTATC
* *
17191835 ATTTTAGTTCTTAATTTT
1 ACTTT-GGTCTTAATTTT
17191853 CTAAATTTTG
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
25 13 0.38
26 14 0.41
27 7 0.21
ACGTcount: A:0.19, C:0.09, G:0.09, T:0.64
Consensus pattern (25 bp):
ACTTTGGTCTTAATTTTGTTTTATC
Found at i:17191840 original size:26 final size:26
Alignment explanation
Indices: 17191791--17191852 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
17191781 CTTACTTTGG
* *
17191791 TCTTAATTTTTTTTTGTCACTTTAGT
1 TCTTAATTTTGTTTTATCACTTTAGT
*
17191817 T-TTAATTATTGTTTTATCATTTTAGT
1 TCTTAATT-TTGTTTTATCACTTTAGT
17191843 TCTTAATTTT
1 TCTTAATTTT
17191853 CTAAATTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 6 0.19
26 19 0.61
27 6 0.19
ACGTcount: A:0.19, C:0.08, G:0.06, T:0.66
Consensus pattern (26 bp):
TCTTAATTTTGTTTTATCACTTTAGT
Found at i:17201279 original size:37 final size:36
Alignment explanation
Indices: 17201220--17201293 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 36
17201210 ATATGTCAAC
*
17201220 ATTTAATTAATTTTTTAAAATTTTAAAAAATTATAAA
1 ATTTAAATAATTTTTTAAAATTTT-AAAAATTATAAA
* * *
17201257 ATTTAAATAATCTTTTT-GAATTTTTAAAATTTTAAA
1 ATTTAAATAAT-TTTTTAAAATTTTAAAAATTATAAA
17201293 A
1 A
17201294 ATAATTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 11 0.34
37 16 0.50
38 5 0.16
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (36 bp):
ATTTAAATAATTTTTTAAAATTTTAAAAATTATAAA
Found at i:17202186 original size:13 final size:13
Alignment explanation
Indices: 17202170--17202209 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
17202160 TTTTCACAGG
17202170 ACTTCTCAAAAGC
1 ACTTCTCAAAAGC
17202183 ACTTCTCAAAAGC
1 ACTTCTCAAAAGC
*
17202196 ACTTTTCAAAAGC
1 ACTTCTCAAAAGC
17202209 A
1 A
17202210 TTGCCAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.40, C:0.28, G:0.07, T:0.25
Consensus pattern (13 bp):
ACTTCTCAAAAGC
Found at i:17203817 original size:3 final size:3
Alignment explanation
Indices: 17203811--17203840 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
17203801 TATACAATTT
17203811 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
17203841 ATATTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:17204781 original size:13 final size:13
Alignment explanation
Indices: 17204763--17204787 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17204753 GAGGTTCTAT
17204763 TTTTTATTTTTTA
1 TTTTTATTTTTTA
17204776 TTTTTATTTTTT
1 TTTTTATTTTTT
17204788 GGGTTTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:17226306 original size:14 final size:16
Alignment explanation
Indices: 17226276--17226313 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
17226266 TAATTTTTAT
17226276 ATTGAATTTTGAATTA
1 ATTGAATTTTGAATTA
17226292 A-TGAATTTT-AATTA
1 ATTGAATTTTGAATTA
17226306 ATTGAATT
1 ATTGAATT
17226314 AGTGGTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
15 14 0.67
16 1 0.05
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (16 bp):
ATTGAATTTTGAATTA
Found at i:17241596 original size:29 final size:27
Alignment explanation
Indices: 17241562--17241664 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
17241552 TACTCAATCA
*
17241562 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
17241591 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
17241620 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
17241649 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
17241665 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:17245655 original size:40 final size:40
Alignment explanation
Indices: 17245588--17245741 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
17245578 ATTGTCTAAG
* ****
17245588 AATTTACCAAAATTTATAATAAGTTACCAAAATAT-TTAA
1 AATTTACCAAAATTTCTAAGCTTTTACCAAAATATCTTAA
* *
17245627 GGATTTACCAAAATTTCTAAGCTTTTACCAAAAT-TCCTTGA
1 -AATTTACCAAAATTTCTAAGCTTTTACCAAAATAT-CTTAA
* ** * *
17245668 AAGTTAATAAAATTTTGTAAGCTTTTACCAAAATTTCTTAA
1 AATTTACCAAAA-TTTCTAAGCTTTTACCAAAATATCTTAA
* *
17245709 AATTTATCAAAATTTGTAAGCTTTTACCAAAAT
1 AATTTACCAAAATTTCTAAGCTTTTACCAAAAT
17245742 TATATTTTTA
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 56 0.60
41 36 0.38
42 1 0.01
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.38
Consensus pattern (40 bp):
AATTTACCAAAATTTCTAAGCTTTTACCAAAATATCTTAA
Found at i:17245734 original size:20 final size:20
Alignment explanation
Indices: 17245611--17245742 Score: 85
Period size: 20 Copynumber: 6.5 Consensus size: 20
17245601 TTATAATAAG
**
17245611 TTACCAAAATATT-TAAGGAT
1 TTACCAAAAT-TTGTAAGCTT
*
17245631 TTACCAAAATTTCTAAGCTT
1 TTACCAAAATTTGTAAGCTT
*
17245651 TTACCAAAATTCCTTGAAAG-TT
1 TTACCAAAA-T--TTGTAAGCTT
* *
17245673 AATA--AAATTTTGTAAGCTT
1 -TTACCAAAATTTGTAAGCTT
* **
17245692 TTACCAAAATTTCTTAA-AAT
1 TTACCAAAATTT-GTAAGCTT
*
17245712 TTATCAAAATTTGTAAGCTT
1 TTACCAAAATTTGTAAGCTT
17245732 TTACCAAAATT
1 TTACCAAAATT
17245743 ATATTTTTAA
Statistics
Matches: 85, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
18 8 0.09
19 7 0.08
20 54 0.64
21 7 0.08
22 2 0.02
23 7 0.08
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (20 bp):
TTACCAAAATTTGTAAGCTT
Found at i:17245742 original size:40 final size:40
Alignment explanation
Indices: 17245611--17245742 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
17245601 TTATAATAAG
* * * *
17245611 TTACCAAAATAT-TTAAGGATTTACCAAAATTTCTAAGCTT
1 TTACCAAAATTTCTTAA-AATTTATCAAAATTTGTAAGCTT
* * *
17245651 TTACCAAAATTCCTTGAAAGTTAAT-AAAATTTTGTAAGCTT
1 TTACCAAAATTTCTT-AAAATTTATCAAAA-TTTGTAAGCTT
17245692 TTACCAAAATTTCTTAAAATTTATCAAAATTTGTAAGCTT
1 TTACCAAAATTTCTTAAAATTTATCAAAATTTGTAAGCTT
17245732 TTACCAAAATT
1 TTACCAAAATT
17245743 ATATTTTTAA
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
40 43 0.55
41 33 0.42
42 2 0.03
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (40 bp):
TTACCAAAATTTCTTAAAATTTATCAAAATTTGTAAGCTT
Found at i:17245778 original size:20 final size:20
Alignment explanation
Indices: 17245575--17245780 Score: 68
Period size: 20 Copynumber: 9.9 Consensus size: 20
17245565 AAATAATTTA
17245575 AAAATTGTCTAAGA-ATTTACC
1 AAAATT-TCTAA-ATATTTACC
* *
17245596 AAAATTTAT-AATAAGTTACC
1 AAAATTTCTAAAT-ATTTACC
**
17245616 AAAATATT-TAAGGATTTACC
1 AAAAT-TTCTAAATATTTACC
*
17245636 AAAATTTCTAAGCT-TTTACC
1 AAAATTTCTAA-ATATTTACC
* * * **
17245656 AAAATTCCTTGAA-AGTTAAT
1 AAAATTTC-TAAATATTTACC
* *
17245676 AAAATTTTGTAAGCT-TTTACC
1 AAAA-TTTCTAA-ATATTTACC
*
17245697 AAAATTTCTTAAA-ATTTATC
1 AAAATTTC-TAAATATTTACC
* *
17245717 AAAATTTGTAAGCT-TTTACC
1 AAAATTTCTAA-ATATTTACC
* *
17245737 AAAATTATATTTTTAATGATTTACC
1 -AAA--AT-TTCTAAAT-ATTTACC
17245762 AAAATTTCTAAATATTTAC
1 AAAATTTCTAAATATTTAC
17245781 AATATTTTTG
Statistics
Matches: 133, Mismatches: 31, Indels: 43
0.64 0.15 0.21
Matches are distributed among these distances:
18 1 0.01
19 6 0.05
20 76 0.57
21 32 0.24
22 2 0.02
23 3 0.02
24 7 0.05
25 6 0.05
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (20 bp):
AAAATTTCTAAATATTTACC
Found at i:17245805 original size:20 final size:19
Alignment explanation
Indices: 17245743--17245849 Score: 92
Period size: 20 Copynumber: 5.4 Consensus size: 19
17245733 TACCAAAATT
17245743 ATATTTTTAATGATTTACCA
1 ATATTTTTAA-GATTTACCA
* * *
17245763 AAATTTCTAAATATTTA-CA
1 ATATTT-TTAAGATTTACCA
17245782 ATATTTTTGAA-ACTTTACCA
1 ATATTTTT-AAGA-TTTACCA
* *
17245802 ATATATTTAATGATTTATCA
1 ATATTTTTAA-GATTTACCA
*
17245822 AAATTTTTAAGGATTTACCA
1 ATATTTTTAA-GATTTACCA
17245842 ATATTTTT
1 ATATTTTT
17245850 GAGACTTTGC
Statistics
Matches: 69, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
18 2 0.03
19 15 0.22
20 48 0.70
21 4 0.06
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (19 bp):
ATATTTTTAAGATTTACCA
Found at i:17245818 original size:59 final size:60
Alignment explanation
Indices: 17245611--17245857 Score: 173
Period size: 61 Copynumber: 4.0 Consensus size: 60
17245601 TTATAATAAG
* * * * * *
17245611 TTACCAAAATATTTAAGGATTTACCAAAATTTCT-AAGCTTTTACCAAAATTCCTTGAAA-G
1 TTACCAATATATTTAATGATTTACCAAAATTTCTAAAG-ATTTACCAATATT-TTTGAAACT
** * * * * * * *
17245671 TTAATAAAATTTTGTAA-GCTTTTACCAAAATTTCTTAAA-ATTTATCAAAATTTGT-AAGCTT
1 TTACCAATATATT-TAATG-ATTTACCAAAATTTC-TAAAGATTTACCAATATTTTTGAAAC-T
*
17245732 TTACCAAAATTATATTTTTAATGATTTACCAAAATTTCTAAATATTTA-CAATATTTTTGAAACT
1 TTACC--AA-TATA--TTTAATGATTTACCAAAATTTCTAAAGATTTACCAATATTTTTGAAACT
* * * *
17245796 TTACCAATATATTTAATGATTTATCAAAATTTTTAAGGATTTACCAATATTTTTGAGACT
1 TTACCAATATATTTAATGATTTACCAAAATTTCTAAAGATTTACCAATATTTTTGAAACT
17245856 TT
1 TT
17245858 GCTAATTAAT
Statistics
Matches: 149, Mismatches: 23, Indels: 30
0.74 0.11 0.15
Matches are distributed among these distances:
59 30 0.20
60 29 0.19
61 35 0.23
62 3 0.02
63 4 0.03
64 20 0.13
65 25 0.17
66 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (60 bp):
TTACCAATATATTTAATGATTTACCAAAATTTCTAAAGATTTACCAATATTTTTGAAACT
Found at i:17245839 original size:40 final size:38
Alignment explanation
Indices: 17245745--17245847 Score: 104
Period size: 39 Copynumber: 2.6 Consensus size: 38
17245735 CCAAAATTAT
* *
17245745 ATTTTTAATGATTTACCAAAATTTCTAAATATTTACAAT
1 ATTTTTAA-GATTTACCAATATTTCTAAATATTTACAAA
17245784 ATTTTTGAA-ACTTTACCAATATATT-T-AATGATTTATCAAA
1 ATTTTT-AAGA-TTTACCAATAT-TTCTAAAT-ATTTA-CAAA
17245824 ATTTTTAAGGATTTACCAATATTT
1 ATTTTTAA-GATTTACCAATATTT
17245848 TTGAGACTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
38 4 0.07
39 26 0.47
40 24 0.44
41 1 0.02
ACGTcount: A:0.39, C:0.10, G:0.05, T:0.47
Consensus pattern (38 bp):
ATTTTTAAGATTTACCAATATTTCTAAATATTTACAAA
Found at i:17245878 original size:60 final size:59
Alignment explanation
Indices: 17245755--17245879 Score: 135
Period size: 60 Copynumber: 2.1 Consensus size: 59
17245745 ATTTTTAATG
* * * **
17245755 ATTTACCAAAATTTCTAAATATTTACAATATTTTTGAAACTTTACCAATATATTTAATG
1 ATTTATCAAAATTTCTAAAGATTTACAATATTTTTGAAACTTTACCAATATATCTAACC
* * * * *
17245814 ATTTATCAAAATTTTTAAGGATTTACCAATATTTTTGAGACTTTGCTAAT-TAATCTAACC
1 ATTTATCAAAATTTCTAAAGATTTA-CAATATTTTTGAAACTTTACCAATAT-ATCTAACC
17245874 ATTTAT
1 ATTTAT
17245880 TGAATTTTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
59 22 0.41
60 32 0.59
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.45
Consensus pattern (59 bp):
ATTTATCAAAATTTCTAAAGATTTACAATATTTTTGAAACTTTACCAATATATCTAACC
Found at i:17245945 original size:21 final size:21
Alignment explanation
Indices: 17245921--17245988 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
17245911 AGACTTTACG
17245921 AAATTATCAAAAGATTTACCA
1 AAATTATCAAAAGATTTACCA
* *
17245942 AAATTGT-TAAAGATTTACCAA
1 AAATTATCAAAAGATTTACC-A
* *
17245963 AAATTAACAAAAGCTTTTACCA
1 AAATTATCAAAAG-ATTTACCA
17245985 AAAT
1 AAAT
17245989 ATTTGAGGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
20 11 0.29
21 12 0.32
22 9 0.24
23 6 0.16
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.29
Consensus pattern (21 bp):
AAATTATCAAAAGATTTACCA
Found at i:17246218 original size:20 final size:20
Alignment explanation
Indices: 17246164--17246218 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
17246154 CCTTATCAAA
17246164 ATTTCTGAGACTTTACCAAT
1 ATTTCTGAGACTTTACCAAT
* * * *
17246184 ATATCTAACAATTTACCAAT
1 ATTTCTGAGACTTTACCAAT
17246204 ATTTCTGAGACTTTA
1 ATTTCTGAGACTTTA
17246219 AGCGTCCCAT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.07, T:0.40
Consensus pattern (20 bp):
ATTTCTGAGACTTTACCAAT
Found at i:17246294 original size:20 final size:20
Alignment explanation
Indices: 17246280--17246375 Score: 86
Period size: 20 Copynumber: 4.8 Consensus size: 20
17246270 CTTTAACAAT
* *
17246280 ATATCTAATGATTTACCAAT
1 ATATCTAACGATTTACCAAA
* * *
17246300 ATTTTTAA-GCATTTATCAAA
1 ATATCTAACG-ATTTACCAAA
*
17246320 ATATCTACCGATTTACCAAA
1 ATATCTAACGATTTACCAAA
* * *
17246340 ATCTCTAACGATTTATCAGA
1 ATATCTAACGATTTACCAAA
*
17246360 ATATCTAAGGATTTAC
1 ATATCTAACGATTTAC
17246376 GAATATTTTT
Statistics
Matches: 59, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
19 1 0.02
20 57 0.97
21 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.38
Consensus pattern (20 bp):
ATATCTAACGATTTACCAAA
Found at i:17246324 original size:40 final size:40
Alignment explanation
Indices: 17246251--17246401 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
17246241 CATCTAAGCC
* * * *
17246251 TTTACCAATATTTTTGAG-ACTTTAACAATATATCTAATGA
1 TTTACCAATATTTTTAAGCA-TTTATCAAAATATCTAACGA
*
17246291 TTTACCAATATTTTTAAGCATTTATCAAAATATCTACCGA
1 TTTACCAATATTTTTAAGCATTTATCAAAATATCTAACGA
* * * * *
17246331 TTTACCAAAATCTCTAA-CGATTTATCAGAATATCTAAGGA
1 TTTACCAATATTTTTAAGC-ATTTATCAAAATATCTAACGA
* *
17246371 TTTACGAATATTTTTAAGCATTTACCAAAAT
1 TTTACCAATATTTTTAAGCATTTATCAAAAT
17246402 TTCTTAAAAA
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 88 0.97
41 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.39
Consensus pattern (40 bp):
TTTACCAATATTTTTAAGCATTTATCAAAATATCTAACGA
Found at i:17246403 original size:20 final size:20
Alignment explanation
Indices: 17246290--17246405 Score: 83
Period size: 20 Copynumber: 5.8 Consensus size: 20
17246280 ATATCTAATG
* *
17246290 ATTTACCAATATTTTTAAGC
1 ATTTACCAAAATTTCTAAGC
* * *
17246310 ATTTATCAAAATATCT-ACC
1 ATTTACCAAAATTTCTAAGC
*
17246329 GATTTACCAAAATCTCTAA-C
1 -ATTTACCAAAATTTCTAAGC
* * * *
17246349 GATTTATCAGAATATCTAAGG
1 -ATTTACCAAAATTTCTAAGC
* * *
17246370 ATTTACGAATATTTTTAAGC
1 ATTTACCAAAATTTCTAAGC
17246390 ATTTACCAAAATTTCT
1 ATTTACCAAAATTTCT
17246406 TAAAAAGTAA
Statistics
Matches: 72, Mismatches: 21, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
19 2 0.03
20 69 0.96
21 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (20 bp):
ATTTACCAAAATTTCTAAGC
Found at i:17246496 original size:20 final size:21
Alignment explanation
Indices: 17246467--17246508 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
17246457 TATTTATAAC
*
17246467 AATTTGTC-AAATTATTAAAG
1 AATTTATCAAAATTATTAAAG
*
17246487 AATTTATCAAAATTTTTAAAG
1 AATTTATCAAAATTATTAAAG
17246508 A
1 A
17246509 CTTGCCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (21 bp):
AATTTATCAAAATTATTAAAG
Found at i:17246712 original size:20 final size:20
Alignment explanation
Indices: 17246689--17246755 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
17246679 TAATCTTTCC
*
17246689 CCAAAATTTTTAAGAATTTA
1 CCAAAATTTCTAAGAATTTA
* *
17246709 CCAAAATGTCTAAGAATTAA
1 CCAAAATTTCTAAGAATTTA
* *
17246729 CCAATATTTCTAAGGATTTA
1 CCAAAATTTCTAAGAATTTA
*
17246749 CCTAAAT
1 CCAAAAT
17246756 ATCCAAGGAT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.34
Consensus pattern (20 bp):
CCAAAATTTCTAAGAATTTA
Found at i:17246799 original size:30 final size:30
Alignment explanation
Indices: 17246765--17246826 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
17246755 TATCCAAGGA
* * *
17246765 TTATCAGAATACCAAAGAGTTTACCAATAT
1 TTATCAAAATACCAAAGAATTTAACAATAT
* *
17246795 TTATCAAAATATCTAAGAATTTAACAATAT
1 TTATCAAAATACCAAAGAATTTAACAATAT
17246825 TT
1 TT
17246827 CTAATTATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.35
Consensus pattern (30 bp):
TTATCAAAATACCAAAGAATTTAACAATAT
Found at i:17248910 original size:118 final size:118
Alignment explanation
Indices: 17248676--17248911 Score: 330
Period size: 118 Copynumber: 2.0 Consensus size: 118
17248666 CAGGGACTAA
* * * *
17248676 GGGATGGAGAAGGTTGTCTCATCTAATATTATGTGATTTTGGGATTAAGTCTAAATGATTCTGTA
1 GGGATGGAGAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATCAAGTCTAAATGATTCTGTA
* * * *
17248741 TTATTGCTTATTAATAGATGACGGGTAGATTTATATATCTTCAGAACTGGAAT
66 TTATTGCTTATTAATAAATAACGAGAAGATTTATATATCTTCAGAACTGGAAT
* ** *
17248794 GGGATGGAGAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATCGAGTCTACCTGATTTTGTA
1 GGGATGGAGAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATCAAGTCTAAATGATTCTGTA
* *
17248859 TTCATTGCTTATTATTAAATAACGAGAAGATTTGTATATCTTCAGAA-TGGAAT
66 TT-ATTGCTTATTAATAAATAACGAGAAGATTTATATATCTTCAGAACTGGAAT
17248912 TTATTCTGTC
Statistics
Matches: 103, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
118 65 0.63
119 38 0.37
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (118 bp):
GGGATGGAGAAGGTCGTCTCATCTAATATTATGTAATTTTAGGATCAAGTCTAAATGATTCTGTA
TTATTGCTTATTAATAAATAACGAGAAGATTTATATATCTTCAGAACTGGAAT
Found at i:17254235 original size:35 final size:34
Alignment explanation
Indices: 17254101--17254226 Score: 121
Period size: 34 Copynumber: 3.6 Consensus size: 34
17254091 TTTTAAAAAA
* *
17254101 TAAATCAAGGTTTAGAGTTTTTTAAAAAAAAATTAAT
1 TAAATTAAGGTTTAGAG-TTTTT--AAGAAAATTAAT
* * * *
17254138 TAAATT-AGTTTTGGGGGTTTTAA-ATAAATTAAT
1 TAAATTAAGGTTTAGAGTTTTTAAGA-AAATTAAT
*
17254171 TAAATTAGGGTTTAGAGTTTTTAAGAAAATTAAT
1 TAAATTAAGGTTTAGAGTTTTTAAGAAAATTAAT
* *
17254205 TTAATTAAGGTTTAGATTTTTT
1 TAAATTAAGGTTTAGAGTTTTT
17254227 TTTAAAAATA
Statistics
Matches: 73, Mismatches: 13, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
32 1 0.01
33 16 0.22
34 39 0.53
35 5 0.07
36 7 0.10
37 5 0.07
ACGTcount: A:0.40, C:0.01, G:0.15, T:0.44
Consensus pattern (34 bp):
TAAATTAAGGTTTAGAGTTTTTAAGAAAATTAAT
Found at i:17254479 original size:126 final size:126
Alignment explanation
Indices: 17254325--17254869 Score: 681
Period size: 125 Copynumber: 4.4 Consensus size: 126
17254315 TTGTTTTTTC
* * * * *
17254325 TTTCTACAGTAGTTTCAGAAAAATTAATTTTGAGAGGACGGTTCTAAAATGATAATGTCAAAAAC
1 TTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAGATAGTGTCAAAAAC
* * *
17254390 GATTCAAGCAAGATGTACTGTCAGCAAAATTACTGAAAAAGGCTCCCACGTGGACGCTCTT
66 GATTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
* * *
17254451 TTTCTATAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAGATAGTGTCAAAAAT
1 TTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAGATAGTGTCAAAAAC
* * *
17254516 GCTTCAAGCAAGATGCACTGTCAGCCAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
66 GATTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
* ** * *
17254577 TTTTTACAGTAG-TTCTTG-AAAAATAATTTTGAGAAGACAATTCTAAAAAAATAGTGCCAAAAA
1 TTTCTACAGTAGTTTC-TGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAGATAGTGTCAAAAA
* * * *
17254640 CGTTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCATGTGGACACT-TT
65 CGATTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
* * *** * *
17254701 TTTCTACAGTAGTTCCTG-AAAAATAAATTTGAGAAGTTTGTTATGAAAA-ATAGTGTCAAAAAC
1 TTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAGATAGTGTCAAAAAC
* * * * *
17254764 -ACTTTAAGCAAGATGCACTATCAATAAAATTACTGAAAAAAAACTCTCACGTGGACGCTCTT
66 GA-TTCAAGCAAGATGCACTGTCAACAAAATTACTG-AAAAAAGCTCCCACGTGGACGCTCTT
* *
17254826 TTTCTACAGTAGTTCCT-AAAAAATAATTTTGTGAAGACGGTTCT
1 TTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCT
17254870 GATCCCACGT
Statistics
Matches: 364, Mismatches: 49, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
123 42 0.12
124 58 0.16
125 138 0.38
126 126 0.35
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (126 bp):
TTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTAAAAAGATAGTGTCAAAAAC
GATTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
Found at i:17254818 original size:124 final size:123
Alignment explanation
Indices: 17254325--17254862 Score: 630
Period size: 126 Copynumber: 4.3 Consensus size: 123
17254315 TTGTTTTTTC
* * * * * *
17254325 TTTCTACAGTAGTTTCAGAAAAATTAATTTTGAGAGGACGGTTCTAAAATGATAATGTCAAAAAC
1 TTTCTACAGTAGTTCCTGAAAAA-TAATTTTGAGAAGA-AGTTCTAAAA-AATAGTGTCAAAAAC
* * *
17254390 GA-TTCAAGCAAGATGTACTGTCAGCAAAATTACTGAAAAAGGCTCCCACGTGGACGCTCTT
63 -ACTTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
* * * *
17254451 TTTCTATAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGATTCTAAAAAGATAGTGTCAAAAAT
1 TTTCTACAGTAGTTCCTG-AAAAATAATTTTGAGAAGAAG-TTCTAAAAA-ATAGTGTCAAAAAC
* * *
17254516 GCTTCAAGCAAGATGCACTGTCAGCCAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
63 ACTTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
* * * * *
17254577 TTTTTACAGTAGTTCTTGAAAAATAATTTTGAGAAGACAATTCTAAAAAAATAGTGCCAAAAACG
1 TTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGA-AGTTCT-AAAAAATAGTGTCAAAAACA
* * * *
17254642 TTTCAAGCAGGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCATGTGGACACT-TT
64 CTTCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
* ** * *
17254701 TTTCTACAGTAGTTCCTGAAAAATAAATTTGAGAAGTTTGTTATGAAAAATAGTGTCAAAAACAC
1 TTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAG-AAGTTCTAAAAAATAGTGTCAAAAACAC
* * * * *
17254766 TTTAAGCAAGATGCACTATCAATAAAATTACTGAAAAAAAACTCTCACGTGGACGCTCTT
65 TTCAAGCAAGATGCACTGTCAACAAAATTACTG-AAAAAAGCTCCCACGTGGACGCTCTT
* *
17254826 TTTCTACAGTAGTTCCTAAAAAATAATTTTGTGAAGA
1 TTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGA
17254863 CGGTTCTGAT
Statistics
Matches: 355, Mismatches: 48, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
123 46 0.13
124 57 0.16
125 123 0.35
126 124 0.35
127 5 0.01
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (123 bp):
TTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGAAGTTCTAAAAAATAGTGTCAAAAACACT
TCAAGCAAGATGCACTGTCAACAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTT
Found at i:17258465 original size:18 final size:18
Alignment explanation
Indices: 17258444--17258479 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
17258434 AAAAGGAAAT
*
17258444 ATATAAGGGTTAGGATAC
1 ATATAAGGGCTAGGATAC
17258462 ATATAAGGGCTAGGATAC
1 ATATAAGGGCTAGGATAC
17258480 GCACCTGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAC
Found at i:17259985 original size:26 final size:24
Alignment explanation
Indices: 17259943--17259995 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
17259933 AATTGTTATA
* **
17259943 AAAATTATAAAATAAAAATTAATT
1 AAAATTACAAAATAAAAAAAAATT
17259967 AAAATTACATAAATGAAAAAAAAATT
1 AAAATTACA-AAAT-AAAAAAAAATT
17259993 AAA
1 AAA
17259996 TAATATTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.33
25 4 0.17
26 12 0.50
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAATTACAAAATAAAAAAAAATT
Found at i:17260014 original size:30 final size:32
Alignment explanation
Indices: 17259942--17260014 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 32
17259932 CAATTGTTAT
* *
17259942 AAAAATTATAAAATAAAAATTAATTAAAATTAC
1 AAAAATT-GAAAATAAAAATTAAATAAAATTAC
* *
17259975 ATAAA-TGAAAA-AAAAATTAAATAATATT-C
1 AAAAATTGAAAATAAAAATTAAATAAAATTAC
17260004 AAAAATTGAAA
1 AAAAATTGAAA
17260015 TTAACCCTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
29 5 0.15
30 20 0.59
31 4 0.12
32 1 0.03
33 4 0.12
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (32 bp):
AAAAATTGAAAATAAAAATTAAATAAAATTAC
Found at i:17263940 original size:25 final size:24
Alignment explanation
Indices: 17263877--17263944 Score: 79
Period size: 24 Copynumber: 2.8 Consensus size: 24
17263867 TTATGTATTA
*
17263877 TTATATTTAATT-TTTTAAAATATT
1 TTATA-TTAATTGTTTTAAAATAAT
17263901 TTATATT-ATTAGTTTTACAAATAAT
1 TTATATTAATT-GTTTTA-AAATAAT
17263926 TTATATTAATTG-TTTAAAA
1 TTATATTAATTGTTTTAAAA
17263945 GGTGTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
22 3 0.08
23 5 0.13
24 14 0.36
25 14 0.36
26 3 0.08
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (24 bp):
TTATATTAATTGTTTTAAAATAAT
Found at i:17265158 original size:17 final size:16
Alignment explanation
Indices: 17265138--17265177 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
17265128 AGCAATTTAA
17265138 TTTTTTCTTTCATGTTT
1 TTTTTTCTTTCAT-TTT
* *
17265155 TTTTATCTTTCCTTTT
1 TTTTTTCTTTCATTTT
17265171 TTTTTTC
1 TTTTTTC
17265178 CATTCTCTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTTTTCTTTCATTTT
Found at i:17266841 original size:21 final size:20
Alignment explanation
Indices: 17266815--17266853 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
17266805 ATGTATTTTG
*
17266815 ATGTTTGGTGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
17266836 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
17266854 ATAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:17267471 original size:48 final size:48
Alignment explanation
Indices: 17267400--17267501 Score: 177
Period size: 48 Copynumber: 2.1 Consensus size: 48
17267390 ATGTCATTAG
17267400 GAGCTTCACTGATTTGGCTTCGGGACATGATATTGGCACTTCGGGTGC
1 GAGCTTCACTGATTTGGCTTCGGGACATGATATTGGCACTTCGGGTGC
* * *
17267448 GAGCTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGT
1 GAGCTTCACTGATTTGGCTTCGGGACATGATATTGGCACTTCGGGTGC
17267496 GAGCTT
1 GAGCTT
17267502 TCGAATTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.16, C:0.20, G:0.31, T:0.33
Consensus pattern (48 bp):
GAGCTTCACTGATTTGGCTTCGGGACATGATATTGGCACTTCGGGTGC
Found at i:17267771 original size:48 final size:48
Alignment explanation
Indices: 17267511--17267758 Score: 397
Period size: 48 Copynumber: 5.2 Consensus size: 48
17267501 TTCGAATTCG
*
17267511 TGATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCGGGCCA
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGGGCCA
* *
17267559 TGATATTAGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTTGGGCCA
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGGGCCA
* * * *
17267607 TAATATTGGCACTTCCGGTGCGAGCTTCATTGATTTGGCTTCTGGCCG
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGGGCCA
* * *
17267655 TGATATTGGCACTTCAGGTGCTAGCTTCATTGATTTGGCTTCAGGCCA
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGGGCCA
*
17267703 TGATATTGGCACTTCGGGTGCAAGCTTCATTGATTTGGCTTCGGGCCA
1 TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGGGCCA
17267751 TGATATTG
1 TGATATTG
17267759 ATACCTAGGG
Statistics
Matches: 183, Mismatches: 17, Indels: 0
0.92 0.09 0.00
Matches are distributed among these distances:
48 183 1.00
ACGTcount: A:0.17, C:0.21, G:0.28, T:0.35
Consensus pattern (48 bp):
TGATATTGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGGGCCA
Found at i:17268417 original size:27 final size:25
Alignment explanation
Indices: 17268364--17268419 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 25
17268354 ATGTGATTGA
* *
17268364 GGTTGGTTTTGTGATGTTTATTAAT
1 GGTTGGTTTTGTGATGTTAAATAAT
*
17268389 GGTTGGTATTTGTGGATGTTAAATGAT
1 GGTTGGT-TTTGT-GATGTTAAATAAT
17268416 GGTT
1 GGTT
17268420 ATTAGAGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 7 0.27
26 5 0.19
27 14 0.54
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (25 bp):
GGTTGGTTTTGTGATGTTAAATAAT
Found at i:17271749 original size:42 final size:46
Alignment explanation
Indices: 17271685--17271896 Score: 161
Period size: 49 Copynumber: 4.6 Consensus size: 46
17271675 CTTCGTTTTC
** *
17271685 TCGATGCCATAGTTCAACTATGGTCTTACAC-AT-C-T-TCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACAATACATATCACAT-A
*
17271728 T-GATGCCATAGCCCAGTTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC--AAT-ACATATCACATA
* *
17271776 TCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCA-C
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-AAT-ACATATCACATA
* ** * * *
17271823 T-GATGCCATATCCCATATATGGTCTTATACAGTAGCATAT-ATCACA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACAATA-CATATCA-CATA
* * *
17271869 CCGATGCCATATCCCAGATATGGTCTTA
1 TCGATGCCATAGCCCAGCTATGGTCTTA
17271897 TACGGAAATC
Statistics
Matches: 140, Mismatches: 17, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
42 25 0.18
43 1 0.01
44 1 0.01
45 11 0.08
46 25 0.18
47 27 0.19
48 16 0.11
49 34 0.24
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (46 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACAATACATATCACATA
Found at i:17271899 original size:47 final size:46
Alignment explanation
Indices: 17271729--17271896 Score: 192
Period size: 47 Copynumber: 3.6 Consensus size: 46
17271719 TTCACATAAT
* *
17271729 GATGCCATAGCCCAGTTATGGTCTTACACGTAATCACATATCACATATC
1 GATGCCATAGCCCAGATATGGTCTTACACGT-ATCACATATCAC--ACC
* * * *
17271778 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
* * * * *
17271824 GATGCCATATCCCATATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTACAC-GTATCACATATCACACC
*
17271871 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGATATGGTCTTA
17271897 TACGGAAATC
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
46 26 0.25
47 37 0.36
48 11 0.11
49 29 0.28
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (46 bp):
GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
Found at i:17271960 original size:31 final size:31
Alignment explanation
Indices: 17271925--17272134 Score: 296
Period size: 31 Copynumber: 6.8 Consensus size: 31
17271915 CTTGTCACTT
* * * *
17271925 GTAGCTGAAGCTACCACTATTCACTGGTCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
17271956 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
17271987 GTAACCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
17272018 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
17272049 GTAGCCGGAGCTACCACTTTTCGCTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
17272080 GTTGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
17272111 GTAGCCG-AGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
17272135 TGTCATTTAT
Statistics
Matches: 159, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
30 17 0.11
31 142 0.89
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:17275442 original size:31 final size:29
Alignment explanation
Indices: 17275407--17275483 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
17275397 ATTGACGCTT
*
17275407 AGTGACTAAAATGTTACAATACGATAACATA
1 AGTGACTAAAATGTAACAATAC-A-AACATA
* *
17275438 AGTGACTAAAATGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACAATACAAACATA
*
17275467 AGTAACTAAAATGTAAC
1 AGTGACTAAAATGTAAC
17275484 CCAAGACAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 22 0.52
30 1 0.02
31 19 0.45
ACGTcount: A:0.49, C:0.13, G:0.12, T:0.26
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAATACAAACATA
Found at i:17275647 original size:19 final size:20
Alignment explanation
Indices: 17275617--17275666 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
17275607 AAGTTTTACT
*
17275617 TTTATA-ATTTTTTTATA-A
1 TTTATATATTTTTCTATAGA
*
17275635 TTTATATATTTTTCTCTAGA
1 TTTATATATTTTTCTATAGA
17275655 TTATATATATTT
1 TT-TATATATTT
17275667 GAATTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 6 0.22
19 9 0.33
20 3 0.11
21 9 0.33
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTATATATTTTTCTATAGA
Found at i:17275682 original size:8 final size:8
Alignment explanation
Indices: 17275669--17275704 Score: 51
Period size: 7 Copynumber: 4.9 Consensus size: 8
17275659 ATATATTTGA
17275669 ATTTTTAT
1 ATTTTTAT
17275677 A-TTTT-T
1 ATTTTTAT
17275683 ATTTTT-T
1 ATTTTTAT
17275690 ATTTTTAT
1 ATTTTTAT
17275698 ATTTTTA
1 ATTTTTA
17275705 ATGTGTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 2 0.08
7 15 0.58
8 9 0.35
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
ATTTTTAT
Found at i:17275690 original size:15 final size:15
Alignment explanation
Indices: 17275670--17275703 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
17275660 TATATTTGAA
17275670 TTTTTATATTTT-TAT
1 TTTTTAT-TTTTATAT
17275685 TTTTTATTTTTATAT
1 TTTTTATTTTTATAT
17275700 TTTT
1 TTTT
17275704 AATGTGTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTATTTTTATAT
Found at i:17276039 original size:15 final size:15
Alignment explanation
Indices: 17276021--17276058 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
17276011 ACATACAACA
*
17276021 ATAATATAAAATAAT
1 ATAATATAAAAAAAT
17276036 ATAATATTAAAAAAAT
1 ATAATA-TAAAAAAAT
17276052 A-AATATA
1 ATAATATA
17276059 CAGTTTATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 10 0.48
16 9 0.43
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
ATAATATAAAAAAAT
Found at i:17276987 original size:35 final size:35
Alignment explanation
Indices: 17276941--17277013 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
17276931 ATTTCATGTT
17276941 TTAGTTATTTAATTTTAAAAAGTTAAAAAATATTA
1 TTAGTTATTTAATTTTAAAAAGTTAAAAAATATTA
17276976 TTAGTTATTTAATTTTAAAAAGTTAAAAAATATTA
1 TTAGTTATTTAATTTTAAAAAGTTAAAAAATATTA
17277011 TTA
1 TTA
17277014 AATTATTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (35 bp):
TTAGTTATTTAATTTTAAAAAGTTAAAAAATATTA
Found at i:17277011 original size:28 final size:33
Alignment explanation
Indices: 17276941--17277031 Score: 116
Period size: 35 Copynumber: 2.7 Consensus size: 33
17276931 ATTTCATGTT
17276941 TTAGTTATTTAATTTTAAAAAGTTAAAAAATATTA
1 TTAGTTATTTAATTTTAAAAAGTT-AAAAATA-TA
17276976 TTAGTTATTTAATTTTAAAAAGTTAAAAA-ATA
1 TTAGTTATTTAATTTTAAAAAGTTAAAAATATA
*
17277008 TTA-TTAAATT-ATTTTCAAAAAGTT
1 TTAGTT-ATTTAATTTT-AAAAAGTT
17277032 TCTTTTAAGT
Statistics
Matches: 53, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
31 7 0.13
32 16 0.30
33 1 0.02
34 5 0.09
35 24 0.45
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.46
Consensus pattern (33 bp):
TTAGTTATTTAATTTTAAAAAGTTAAAAATATA
Found at i:17277617 original size:3 final size:3
Alignment explanation
Indices: 17277609--17277657 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
17277599 CTTTCTTCAA
17277609 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17277657 T
1 T
17277658 TATAGTAATC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:17287687 original size:14 final size:14
Alignment explanation
Indices: 17287668--17287697 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
17287658 ATGTGGCGAA
*
17287668 TAATTTACTTAATG
1 TAATTTAATTAATG
17287682 TAATTTAATTAATG
1 TAATTTAATTAATG
17287696 TA
1 TA
17287698 TTTTTGATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (14 bp):
TAATTTAATTAATG
Found at i:17298852 original size:64 final size:68
Alignment explanation
Indices: 17298774--17298934 Score: 186
Period size: 71 Copynumber: 2.4 Consensus size: 68
17298764 TACATGATAC
* * ** *
17298774 ATACTTTAACATTTCATGCAAATATAATATAGAAAATGAT-AA-ATAACGACATAAATTAC-ATA
1 ATACATTAACATTTCATGCAAATATAACATAGAAAACAATGAATATAACAACATAAATTACAATA
17298836 -AT
66 TAT
* *
17298838 ATACATTAACATTTCATGCAAAATACAACATAGAAAACAATGAATATAACAATATAAATTACATA
1 ATACATTAACATTTCATGC-AAATATAACATAGAAAACAATGAATATAACAACATAAATTAC--A
17298903 ATATAT
63 ATATAT
* *
17298909 ATACAATAATATTTCATGCAAATATA
1 ATACATTAACATTTCATGCAAATATA
17298935 TAAAAACAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
64 18 0.22
65 17 0.21
66 2 0.03
67 15 0.19
70 9 0.11
71 19 0.24
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (68 bp):
ATACATTAACATTTCATGCAAATATAACATAGAAAACAATGAATATAACAACATAAATTACAATA
TAT
Found at i:17299390 original size:5 final size:5
Alignment explanation
Indices: 17299360--17299531 Score: 66
Period size: 5 Copynumber: 35.2 Consensus size: 5
17299350 ATTATACATA
* * * *
17299360 ATAAT A-AAT AAAAA ATAAT A-AA- ATAAT ATAAT AT-AT AATAAA ATAAAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT AT-AAT
* * *
17299408 ATAAT ATAAT GAATAAT ATATAT AGTAAA ATGAT ATAAT AT-AT AATAAA
1 ATAAT ATAAT --ATAAT ATA-AT A-TAAT ATAAT ATAAT ATAAT -ATAAT
* *
17299457 AT-AT ATAA- ATAA- AGT-AT ATAAT AAAAT ATAA- ATAGT ATAAT A-AAT
1 ATAAT ATAAT ATAAT A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
*
17299502 AATACAT A-AAT A-AAA ATAAT AT-AT ATAAT A
1 -ATA-AT ATAAT ATAAT ATAAT ATAAT ATAAT A
17299532 ATTTTTTACA
Statistics
Matches: 128, Mismatches: 17, Indels: 44
0.68 0.09 0.23
Matches are distributed among these distances:
3 1 0.01
4 38 0.30
5 66 0.52
6 14 0.11
7 9 0.07
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (5 bp):
ATAAT
Found at i:17299399 original size:12 final size:12
Alignment explanation
Indices: 17299382--17299533 Score: 82
Period size: 12 Copynumber: 13.4 Consensus size: 12
17299372 AAATAATAAA
17299382 ATAATATAATAT
1 ATAATATAATAT
17299394 ATAATA-AA-AT
1 ATAATATAATAT
*
17299404 A-AAAATAATAT
1 ATAATATAATAT
*
17299415 AATGA-ATAATAT
1 -ATAATATAATAT
17299427 AT-ATAGTAA-A-
1 ATAATA-TAATAT
*
17299437 ATGATATAATAT
1 ATAATATAATAT
*
17299449 ATAATAAAATAT
1 ATAATATAATAT
17299461 ATAA-ATAAAGTAT
1 ATAATAT-AA-TAT
17299474 ATAATA-AA-AT
1 ATAATATAATAT
*
17299484 ATAA-ATAGTAT
1 ATAATATAATAT
*
17299495 AATAA-ATAATAC
1 -ATAATATAATAT
*
17299507 ATAA-ATAA-AA
1 ATAATATAATAT
17299517 ATAATAT-ATAT
1 ATAATATAATAT
17299528 AATAAT
1 -ATAAT
17299534 TTTTTACATA
Statistics
Matches: 112, Mismatches: 10, Indels: 36
0.71 0.06 0.23
Matches are distributed among these distances:
9 4 0.04
10 24 0.21
11 26 0.23
12 49 0.44
13 8 0.07
14 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (12 bp):
ATAATATAATAT
Found at i:17299452 original size:55 final size:54
Alignment explanation
Indices: 17299376--17299615 Score: 184
Period size: 55 Copynumber: 4.5 Consensus size: 54
17299366 AATAAAAAAT
17299376 AATAAAATAATATAATATATAATAAAATAAAAATAATATA-ATGAATAATATATA
1 AATAAAATAATATAATATATAATAAAATAAAAATAATATATAT-AATAATATATA
* * *
17299430 TAGTAAAATGATATAATATATAATAAAATATATAAATAA-AGTATATAATAAAATATA
1 -AATAAAATAATATAATATATAATAAAATA-A-AAATAATA-TATATAATAATATATA
** * *
17299487 AATAGTATAATA-AATA-ATACAT-AAATAAAAATAATATATATAATAATTTTTTA
1 AATAAAATAATATAATATATA-ATAAAATAAAAATAATATATATAATAA-TATATA
* * * *
17299540 CATATATAAATAATGT--T-TATAGTAAAA-ATAAATAATATATAAAAT-ATATA-A
1 -A-ATA-AAATAATATAATATATAATAAAATAAAAATAATATATATAATAATATATA
*
17299591 AAT-AAATAA-ATTATATATAA-AAAAT
1 AATAAAATAATATAATATATAATAAAAT
17299616 TTAAAAAGGA
Statistics
Matches: 148, Mismatches: 20, Indels: 40
0.71 0.10 0.19
Matches are distributed among these distances:
46 1 0.01
47 6 0.04
48 5 0.03
49 6 0.04
50 1 0.01
51 1 0.01
52 18 0.12
53 6 0.04
54 26 0.18
55 43 0.29
56 15 0.10
57 18 0.12
58 2 0.01
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (54 bp):
AATAAAATAATATAATATATAATAAAATAAAAATAATATATATAATAATATATA
Found at i:17299485 original size:23 final size:23
Alignment explanation
Indices: 17299446--17299515 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 23
17299436 AATGATATAA
17299446 TATATAATAAAATATATAAATAAAG
1 TATATAAT-AAA-ATATAAATAAAG
17299471 TATATAATAAAATATAAAT--AG
1 TATATAATAAAATATAAATAAAG
* *
17299492 TATAATAAATAATACATAAATAAA
1 TAT-AT-AATAAAATATAAATAAA
17299516 AATAATATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
21 5 0.13
22 2 0.05
23 20 0.51
24 3 0.08
25 9 0.23
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (23 bp):
TATATAATAAAATATAAATAAAG
Found at i:17299490 original size:80 final size:80
Alignment explanation
Indices: 17299391--17299610 Score: 211
Period size: 80 Copynumber: 2.7 Consensus size: 80
17299381 AATAATATAA
* * *
17299391 TATATAATAAAATAAAAATAATATAATGAATAATATATATAGT-AAAATGATATA-ATATATAA-
1 TATATAATAAAATATAAATAATATAAT-AATAATATATA-AATAAAAATAATATATATA-ATAAT
17299453 TAAAATATATAAATAAAG
63 TAAAATATATAAATAAAG
* *
17299471 TATATAATAAAATATAAATAGTATAATAAATAATACATAAATAAAAATAATATATATAATAATTT
1 TATATAATAAAATATAAATAATATAAT-AATAATATATAAATAAAAATAATATATATAATAA---
* * *
17299536 TTTACATATATAAATAATG
62 TTAAAATATATAAATAAAG
* * *
17299555 TTTATAGTAAAA-ATAAATAATAT-ATAA-AATATATAAAATAAATAA-ATTATATATAA
1 TATATAATAAAATATAAATAATATAATAATAATATAT-AAATAAA-AATAATATATATAA
17299611 AAAATTTAAA
Statistics
Matches: 118, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
79 2 0.02
80 55 0.47
81 22 0.19
82 4 0.03
83 10 0.08
84 25 0.21
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (80 bp):
TATATAATAAAATATAAATAATATAATAATAATATATAAATAAAAATAATATATATAATAATTAA
AATATATAAATAAAG
Found at i:17299558 original size:19 final size:21
Alignment explanation
Indices: 17299520--17299558 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
17299510 AATAAAAATA
*
17299520 ATATATATAATAATTTTTTAC
1 ATATATATAATAATTGTTTAC
17299541 ATATATA-AATAA-TGTTTA
1 ATATATATAATAATTGTTTA
17299559 TAGTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
ATATATATAATAATTGTTTAC
Found at i:17299587 original size:9 final size:9
Alignment explanation
Indices: 17299573--17299612 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
17299563 AAAAATAAAT
17299573 AATATATAA
1 AATATATAA
17299582 AATATATAA
1 AATATATAA
*
17299591 AATAAATAA
1 AATATATAA
17299600 ATTATATATAA
1 A--ATATATAA
17299611 AA
1 AA
17299613 AATTTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 19 0.70
11 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AATATATAA
Found at i:17299589 original size:29 final size:29
Alignment explanation
Indices: 17299565--17299621 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
17299555 TTTATAGTAA
17299565 AAATAAATAATATATAAAATATATAAAAT
1 AAATAAATAATATATAAAATATATAAAAT
* * *
17299594 AAATAAATTATATATAAAAAATTTAAAA
1 AAATAAATAATATATAAAATATATAAAA
17299622 AGGATTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (29 bp):
AAATAAATAATATATAAAATATATAAAAT
Found at i:17299594 original size:18 final size:19
Alignment explanation
Indices: 17299573--17299612 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
17299563 AAAAATAAAT
*
17299573 AATATATAAA-ATATATAA
1 AATAAATAAATATATATAA
17299591 AATAAATAAATTATATATAA
1 AATAAATAAA-TATATATAA
17299611 AA
1 AA
17299613 AATTTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAAATAAATATATATAA
Found at i:17299813 original size:30 final size:30
Alignment explanation
Indices: 17299779--17299836 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
17299769 ATAATGGCCA
*
17299779 TTAGGACTAAATTGA-AACAAAAATAAAAGG
1 TTAGGACCAAATT-ATAACAAAAATAAAAGG
* *
17299809 TTAGGGCCAAATTATAATAAAAATAAAA
1 TTAGGACCAAATTATAACAAAAATAAAA
17299837 TGAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.22
Consensus pattern (30 bp):
TTAGGACCAAATTATAACAAAAATAAAAGG
Found at i:17302518 original size:40 final size:39
Alignment explanation
Indices: 17302353--17302536 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
17302343 AAATTGAATG
* * *
17302353 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
17302393 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
17302433 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
17302473 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
17302512 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
17302537 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:17302561 original size:80 final size:81
Alignment explanation
Indices: 17302393--17302581 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
17302383 GCTGGAAATT
* * * *
17302393 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
17302458 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
17302474 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
17302537 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
17302553 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
17302582 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:17310637 original size:40 final size:39
Alignment explanation
Indices: 17310472--17310655 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
17310462 AAATTGAATG
* * *
17310472 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
17310512 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
17310552 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
17310592 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
17310631 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
17310656 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:17310680 original size:80 final size:81
Alignment explanation
Indices: 17310512--17310700 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
17310502 GCTGGAAATT
* * * *
17310512 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
17310577 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
17310593 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
17310656 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
17310672 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
17310701 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:17315366 original size:47 final size:47
Alignment explanation
Indices: 17315315--17315790 Score: 642
Period size: 47 Copynumber: 10.1 Consensus size: 47
17315305 TTAGGATTTT
* * *
17315315 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGACGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
17315362 ATGTGATGAATGTG--CAT--ATA--TGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
17315403 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
17315450 ATGTGATG-ATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
17315496 ATGTGATGAATGTGAACCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C--ATGCATATGTGTGATAAGGCCGAATGGCCA
** *
17315546 ATGTGATGAATGTGAACTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAC-----ATGCATATGTGTGATAAGGCCGAATGGCCA
**
17315598 ATGTGATGAATGTGAACGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAC--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
17315647 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
17315694 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
17315741 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
17315788 ATG
1 ATG
17315791 CGAAATGTAT
Statistics
Matches: 395, Mismatches: 21, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
41 34 0.09
43 5 0.01
45 5 0.01
46 46 0.12
47 166 0.42
48 1 0.00
49 48 0.12
50 43 0.11
52 47 0.12
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:17315499 original size:24 final size:24
Alignment explanation
Indices: 17315426--17315500 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
17315416 GAACATGCGT
17315426 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
** ** **
17315450 ATGTGATGATGTGAAC--AT-GCGT
1 ATGTG-TGATAAGGCCGAATGGCCA
17315472 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
17315496 ATGTG
1 ATGTG
17315501 ATGAATGTGA
Statistics
Matches: 35, Mismatches: 12, Indels: 8
0.64 0.22 0.15
Matches are distributed among these distances:
21 6 0.17
22 7 0.20
23 4 0.11
24 12 0.34
25 6 0.17
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:17315529 original size:143 final size:141
Alignment explanation
Indices: 17315315--17315790 Score: 635
Period size: 143 Copynumber: 3.4 Consensus size: 141
17315305 TTAGGATTTT
* ** *
17315315 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGACGAATGGCCAATGTGATGAATGTG--CA
1 ATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
17315378 T--ATA--TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGG
66 TACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
17315439 CCGAATGGCCA
131 CCGAATGGCCA
**
17315450 ATGTGATG-ATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
* ** *
17315514 GTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACTGTATATATATATGCG
65 --ATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC-----ATGCATATGTG
17315579 TGATAAGGCCGAATGGCCA
123 TGATAAGGCCGAATGGCCA
17315598 ATGTGATGAATGTGAACGTAT-ATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ATGTGATGAATGTGAAC--ATGA-ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
17315662 ACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATA
63 ACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATA
17315727 AGGCCGAATGGCCA
128 AGGCCGAATGGCCA
* * *
17315741 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCAATG
17315791 CGAAATGTAT
Statistics
Matches: 304, Mismatches: 18, Indels: 32
0.86 0.05 0.09
Matches are distributed among these distances:
134 51 0.17
135 8 0.03
137 1 0.00
139 2 0.01
141 31 0.10
142 1 0.00
143 80 0.26
148 78 0.26
149 8 0.03
150 1 0.00
151 43 0.14
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
CCGAATGGCCA
Found at i:17315551 original size:96 final size:94
Alignment explanation
Indices: 17315315--17315790 Score: 633
Period size: 96 Copynumber: 5.0 Consensus size: 94
17315305 TTAGGATTTT
* * * *
17315315 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGACGAATGGCCAATGTGATGAATGTG--CA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
17315378 T--ATA--TGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* *
17315403 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATG-ATGTGAACA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
17315467 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
*
17315496 ATGTGATGAATGTGAACCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ATGTGATGAATGTGAA-C--ATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
** *
17315561 ACTGTATATATATATGCGTGATAAGGCCGAATGGCCA
63 AC-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
17315598 ATGTGATGAATGTGAACGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAC--ATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
17315663 CATGCGTATGTGTGATAAGGCCGAATGGCCA
64 CATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
17315694 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
17315759 TGAATATATGTGGTAAGGCCGAATGGCTA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
17315788 ATG
1 ATG
17315791 CGAAATGTAT
Statistics
Matches: 350, Mismatches: 23, Indels: 24
0.88 0.06 0.06
Matches are distributed among these distances:
87 5 0.01
88 53 0.15
89 3 0.01
91 2 0.01
93 37 0.11
94 72 0.21
96 78 0.22
97 8 0.02
101 50 0.14
102 42 0.12
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATACATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:17315814 original size:44 final size:46
Alignment explanation
Indices: 17315764--17315852 Score: 137
Period size: 44 Copynumber: 2.0 Consensus size: 46
17315754 GAACATGAAT
* *
17315764 ATATGTGGTAAGGCCGAATGGCTAATGCGA-A-ATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAGATATGTATGAGATGG
*
17315808 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAGATATGTATGAGATG
17315853 TGTATATATA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 27 0.68
45 1 0.03
46 12 0.30
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAGATATGTATGAGATGG
Found at i:17316080 original size:36 final size:36
Alignment explanation
Indices: 17315998--17316140 Score: 232
Period size: 37 Copynumber: 3.9 Consensus size: 36
17315988 GGAAATATAT
17315998 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-TG
*
17316035 TCCGGGTAAGACCCGATGACTACGTGAGGAGATTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
17316071 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTTG
* * *
17316108 TCCGGGTAAGACCCGATAACTTCATGTGGAGAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
17316141 ATCGTCTGAG
Statistics
Matches: 100, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
36 34 0.34
37 66 0.66
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
Found at i:17316139 original size:73 final size:73
Alignment explanation
Indices: 17315998--17316140 Score: 241
Period size: 73 Copynumber: 2.0 Consensus size: 73
17315988 GGAAATATAT
* *
17315998 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGAG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACATGAG
17316063 GAGATTTG
66 GAGATTTG
* * *
17316071 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTTCATGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACATGAG
17316136 GAGAT
66 GAGAT
17316141 ATCGTCTGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 65 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (73 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACATGAG
GAGATTTG
Found at i:17317488 original size:40 final size:40
Alignment explanation
Indices: 17317407--17317836 Score: 702
Period size: 40 Copynumber: 10.8 Consensus size: 40
17317397 GAGAATTGAG
*
17317407 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
17317446 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
17317486 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
17317526 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
17317566 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
17317606 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATT-GTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
17317645 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
17317685 GGTGTTATATCCGGGCTAAGTCCCGAGTAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
17317725 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** *
17317765 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
17317805 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
17317837 ATCATGCTGG
Statistics
Matches: 366, Mismatches: 23, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 59 0.16
40 307 0.84
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:17317758 original size:199 final size:200
Alignment explanation
Indices: 17317407--17317836 Score: 711
Period size: 199 Copynumber: 2.2 Consensus size: 200
17317397 GAGAATTGAG
17317407 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
17317471 AGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATAT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATAT
* ** *
17317536 CCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTC
131 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTC
17317601 GTGCT
196 GTGCT
*
17317606 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATT-GTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
* * * *
17317670 AAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAGTAGCATTCGTGCTAGTGATGTAT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATAT
* *
17317735 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTC
131 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTC
17317800 GTGCT
196 GTGCT
* * *
17317805 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
17317837 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
199 203 0.95
200 11 0.05
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (200 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATAT
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCGAAGAGCATTC
GTGCT
Found at i:17325614 original size:25 final size:25
Alignment explanation
Indices: 17325586--17325636 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
17325576 ACTCATCAGA
*
17325586 TTCAATTTGAAGGATTTCATTTTTC
1 TTCAATTCGAAGGATTTCATTTTTC
17325611 TTCAATTCGAAGGATTTCATTTTTC
1 TTCAATTCGAAGGATTTCATTTTTC
17325636 T
1 T
17325637 GACATTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.12, T:0.51
Consensus pattern (25 bp):
TTCAATTCGAAGGATTTCATTTTTC
Found at i:17334505 original size:30 final size:30
Alignment explanation
Indices: 17334469--17334532 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
17334459 AATTCCATTG
*
17334469 CTTACATGGTTTCTTCTGTAAGAAACTAGA
1 CTTACATGGTTTCTTCTATAAGAAACTAGA
17334499 CTTACATGGTTTCTTCTATAAGAAACTAGA
1 CTTACATGGTTTCTTCTATAAGAAACTAGA
17334529 CTTA
1 CTTA
17334533 ATAAGATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (30 bp):
CTTACATGGTTTCTTCTATAAGAAACTAGA
Found at i:17335175 original size:8 final size:8
Alignment explanation
Indices: 17335133--17335157 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
17335123 ATATAGACTA
17335133 AATAAAAT
1 AATAAAAT
17335141 AATAAAAT
1 AATAAAAT
17335149 AATAAAAT
1 AATAAAAT
17335157 A
1 A
17335158 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:17335181 original size:29 final size:31
Alignment explanation
Indices: 17335130--17335202 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 31
17335120 TATATATAGA
*
17335130 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
17335159 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
17335190 CTAATT-AAATAAT
1 CTAATTAAAATAAT
17335203 TATAAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
28 6 0.17
29 14 0.39
30 6 0.17
31 10 0.28
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:17335207 original size:29 final size:30
Alignment explanation
Indices: 17335137--17335208 Score: 71
Period size: 31 Copynumber: 2.4 Consensus size: 30
17335127 AGACTAAATA
*
17335137 AAATAA-TA-AAATAATAAAATATCTTATT
1 AAATAATTATAAATAATAAAATATCTAATT
*
17335165 AAA-ATATTAAATAAATAAT-AATTATCTAATT
1 AAATA-ATT--ATAAATAATAAAATATCTAATT
17335196 AAATAATTATAAA
1 AAATAATTATAAA
17335209 ATATCACCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
27 1 0.03
28 4 0.11
29 6 0.17
31 17 0.47
32 8 0.22
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (30 bp):
AAATAATTATAAATAATAAAATATCTAATT
Found at i:17336096 original size:5 final size:5
Alignment explanation
Indices: 17336086--17336128 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
17336076 TTTTATGTTT
17336086 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT
17336129 ATAAACATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:17337453 original size:18 final size:19
Alignment explanation
Indices: 17337432--17337470 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
17337422 ATATATAGAT
17337432 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
17337450 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
17337469 AT
1 AT
17337471 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:17337820 original size:39 final size:39
Alignment explanation
Indices: 17337710--17337844 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
17337700 GACCTCGAGT
* * * *
17337710 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
17337751 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
17337789 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
17337828 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
17337845 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:17338005 original size:19 final size:17
Alignment explanation
Indices: 17337967--17338006 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
17337957 AATAAAATGA
17337967 GAAATTGAATTGAAATT
1 GAAATTGAATTGAAATT
*
17337984 GAAATTGAGATATGAGATT
1 GAAATTGA-AT-TGAAATT
17338003 GAAA
1 GAAA
17338007 ACATGAACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 2 0.10
19 10 0.50
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (17 bp):
GAAATTGAATTGAAATT
Found at i:17342506 original size:5 final size:5
Alignment explanation
Indices: 17342489--17342532 Score: 81
Period size: 5 Copynumber: 9.0 Consensus size: 5
17342479 TGTTTAATTA
17342489 TATAT TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
17342533 ATAAACATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 34 0.89
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:17343858 original size:18 final size:19
Alignment explanation
Indices: 17343837--17343875 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
17343827 ATATATAGAT
17343837 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
17343855 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
17343874 AT
1 AT
17343876 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:17344225 original size:39 final size:39
Alignment explanation
Indices: 17344115--17344249 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
17344105 GACCTCGAGT
* * * *
17344115 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
17344156 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
17344194 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
17344233 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
17344250 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:17344393 original size:18 final size:19
Alignment explanation
Indices: 17344372--17344412 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
17344362 AATAAAATGA
17344372 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
17344390 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
17344409 GAAA
1 GAAA
17344413 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:17346105 original size:46 final size:46
Alignment explanation
Indices: 17346052--17346249 Score: 145
Period size: 46 Copynumber: 4.2 Consensus size: 46
17346042 GATTTCATCG
* * *
17346052 GCATCGGCATTGAGACG-AGAGCTAGTGTAAGATATGTCTGGGACAT
1 GCATCGGCATCGAGACGTA-AGCCAGTGTAAGACATGTCTGGGACAT
* *
17346098 GCATCGGCCTCGAGATGTAAGCCAGTGTAAGACATGTCTGGGACAT
1 GCATCGGCATCGAGACGTAAGCCAGTGTAAGACATGTCTGGGACAT
* * * * *
17346144 GCATCCGC-TACAAGATGT--GTCAGTGTAAGACCATGCCTGGGACAT
1 GCATCGGCAT-CGAGACGTAAGCCAGTGTAAGA-CATGTCTGGGACAT
* * * * *
17346189 GGCTTCGGCA-CAAATATGTGAGAGTCAGTGTAAGACCATGTCTGGGACAT
1 -GCATCGGCATC-GAGACGT-A-AGCCAGTGTAAGA-CATGTCTGGGACAT
17346239 GGCATCGGCAT
1 -GCATCGGCAT
17346250 TATACCCTGT
Statistics
Matches: 127, Mismatches: 14, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
44 11 0.09
45 15 0.12
46 65 0.51
47 1 0.01
50 35 0.28
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GCATCGGCATCGAGACGTAAGCCAGTGTAAGACATGTCTGGGACAT
Found at i:17347989 original size:20 final size:21
Alignment explanation
Indices: 17347961--17348000 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
17347951 TAAACTGATA
* *
17347961 ACTTGGGAAACTTTT-AAAAC
1 ACTTAGGAAAATTTTCAAAAC
17347981 ACTTAGGAAAATTTTCAAAA
1 ACTTAGGAAAATTTTCAAAA
17348001 TACAGGGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (21 bp):
ACTTAGGAAAATTTTCAAAAC
Found at i:17350379 original size:13 final size:13
Alignment explanation
Indices: 17350361--17350394 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
17350351 ATCGCAAATA
17350361 GGCGTGTCACACG
1 GGCGTGTCACACG
17350374 GGCGTGTCACACG
1 GGCGTGTCACACG
17350387 GGCGTGTC
1 GGCGTGTC
17350395 CCTTCGAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.12, C:0.29, G:0.41, T:0.18
Consensus pattern (13 bp):
GGCGTGTCACACG
Found at i:17351540 original size:19 final size:19
Alignment explanation
Indices: 17351505--17351542 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
17351495 TTGTGATTAA
*
17351505 AATTTTTATTGTCTTTTCT
1 AATTTTTATTGTATTTTCT
17351524 AATTTTTCATT-TATTTTCT
1 AATTTTT-ATTGTATTTTCT
17351543 TCTGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.18, C:0.11, G:0.03, T:0.68
Consensus pattern (19 bp):
AATTTTTATTGTATTTTCT
Found at i:17354073 original size:57 final size:57
Alignment explanation
Indices: 17353985--17354100 Score: 232
Period size: 57 Copynumber: 2.0 Consensus size: 57
17353975 GGTGTCCTTC
17353985 ACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCT
1 ACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCT
17354042 ACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCT
1 ACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCT
17354099 AC
1 AC
17354101 ATGGGATACA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (57 bp):
ACTTGGAATCACGCATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCT
Found at i:17354101 original size:30 final size:30
Alignment explanation
Indices: 17354010--17354102 Score: 72
Period size: 30 Copynumber: 3.2 Consensus size: 30
17354000 TGCGACCTAG
17354010 CTACATTTATCTTTCACGTAGCTCTCTTGT
1 CTACATTTATCTTTCACGTAGCTCTCTTGT
* * * * *
17354040 CTAC-TTGGA---ATCACGCATGCGAC-CTAG-
1 CTACATT-TATCTTTCACGTA-GC-TCTCTTGT
17354067 CTACATTTATCTTTCACGTAGCTCTCTTGT
1 CTACATTTATCTTTCACGTAGCTCTCTTGT
17354097 CTACAT
1 CTACAT
17354103 GGGATACATC
Statistics
Matches: 44, Mismatches: 10, Indels: 18
0.61 0.14 0.25
Matches are distributed among these distances:
27 11 0.25
28 8 0.18
29 8 0.18
30 17 0.39
ACGTcount: A:0.20, C:0.28, G:0.13, T:0.39
Consensus pattern (30 bp):
CTACATTTATCTTTCACGTAGCTCTCTTGT
Found at i:17376677 original size:25 final size:25
Alignment explanation
Indices: 17376649--17376706 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
17376639 TATGTTCACT
*
17376649 CGAGCTGTAAATCAGTATGCTCTCA
1 CGAGCTGTAAATCAGTATACTCTCA
* **
17376674 CGAGCTATAAATTGGTATACTCTCA
1 CGAGCTGTAAATCAGTATACTCTCA
*
17376699 CAAGCTGT
1 CGAGCTGT
17376707 GGAGTATCCG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (25 bp):
CGAGCTGTAAATCAGTATACTCTCA
Found at i:17381045 original size:13 final size:13
Alignment explanation
Indices: 17381027--17381056 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
17381017 GGTATATGAG
*
17381027 ATGGTTATTTGAA
1 ATGGTTACTTGAA
17381040 ATGGTTACTTGAA
1 ATGGTTACTTGAA
17381053 ATGG
1 ATGG
17381057 AAATGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.27, T:0.40
Consensus pattern (13 bp):
ATGGTTACTTGAA
Found at i:17384471 original size:19 final size:19
Alignment explanation
Indices: 17384449--17384511 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
17384439 AATAAAAATA
17384449 AAAATAATTTTAAAAATTT
1 AAAATAATTTTAAAAATTT
*
17384468 AAAATAAATTTT-TAAATTT
1 AAAAT-AATTTTAAAAATTT
17384487 AAAAT-ATTTATAAAAATTCT
1 AAAATAATTT-TAAAAATT-T
17384507 AAAAT
1 AAAAT
17384512 TTATCTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.11
18 1 0.03
19 21 0.55
20 12 0.32
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATAATTTTAAAAATTT
Found at i:17384503 original size:27 final size:27
Alignment explanation
Indices: 17384457--17384514 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
17384447 TAAAAATAAT
* *
17384457 TTTAAAAATTTAAAATAAATTTTTAAA
1 TTTAAAAATTTAAAATAAATTCTAAAA
*
17384484 TTTAAAATATTTATAA-AAATTCTAAAA
1 TTTAAAA-ATTTAAAATAAATTCTAAAA
17384511 TTTA
1 TTTA
17384515 TCTTTTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (27 bp):
TTTAAAAATTTAAAATAAATTCTAAAA
Found at i:17386478 original size:24 final size:24
Alignment explanation
Indices: 17386441--17386497 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
17386431 TTATTCATAC
17386441 ATTATAT-TATATGCATGAA-TCTT
1 ATTATATATATATGCAT-AAGTCTT
*
17386464 ATTATATATATATGCATAAGTTTT
1 ATTATATATATATGCATAAGTCTT
17386488 ATTATATATA
1 ATTATATATA
17386498 ATATATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 9 0.29
24 22 0.71
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (24 bp):
ATTATATATATATGCATAAGTCTT
Found at i:17387244 original size:18 final size:18
Alignment explanation
Indices: 17387215--17387258 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
17387205 AACAACGCCA
17387215 TGTTAT-TTTGTGTACTG
1 TGTTATATTTGTGTACTG
*
17387232 TGTTATATTTGTGTATTG
1 TGTTATATTTGTGTACTG
17387250 TGTTATATT
1 TGTTATATT
17387259 GTGAACCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.16, C:0.02, G:0.20, T:0.61
Consensus pattern (18 bp):
TGTTATATTTGTGTACTG
Found at i:17388094 original size:17 final size:17
Alignment explanation
Indices: 17388072--17388142 Score: 74
Period size: 17 Copynumber: 4.2 Consensus size: 17
17388062 TGAACGAATT
17388072 TTATATTGAATGAACTG
1 TTATATTGAATGAACTG
* * *
17388089 TTATATTGTACGAACTA
1 TTATATTGAATGAACTG
*
17388106 TTATATTAAATGAA-TG
1 TTATATTGAATGAACTG
*
17388122 TTAT-TATGCATGAACTG
1 TTATAT-TGAATGAACTG
17388139 TTAT
1 TTAT
17388143 TTCATATGAA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
15 1 0.02
16 11 0.26
17 31 0.72
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.44
Consensus pattern (17 bp):
TTATATTGAATGAACTG
Found at i:17388137 original size:33 final size:34
Alignment explanation
Indices: 17388072--17388159 Score: 83
Period size: 33 Copynumber: 2.6 Consensus size: 34
17388062 TGAACGAATT
* *
17388072 TTATATTGAATGAACTGTTATATTGTACGAACTA
1 TTATATTAAATGAACTGTTATATTGCACGAACTA
* *
17388106 TTATATTAAATGAA-TGTTAT-TATGCATGAACTG
1 TTATATTAAATGAACTGTTATAT-TGCACGAACTA
* *
17388139 TTAT-TTCATATGAACTATTAT
1 TTATATT-AAATGAACTGTTAT
17388160 TTTATGTGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
32 3 0.07
33 24 0.53
34 18 0.40
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.44
Consensus pattern (34 bp):
TTATATTAAATGAACTGTTATATTGCACGAACTA
Found at i:17403628 original size:39 final size:39
Alignment explanation
Indices: 17403574--17403787 Score: 254
Period size: 39 Copynumber: 5.5 Consensus size: 39
17403564 ATTTGAAAAT
* *
17403574 TATATCCGGACTTAAAGTCTGCAGGCTATATGCGGGAAA
1 TATATCAGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
*
17403613 TATATCAGGACTTAAAGTCCGCAGGCAATATGC-GGAAA
1 TATATCAGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* * *
17403651 TATAT-ATGGACTTCAGGTTCGCAGGCTATATGCGGGAAA
1 TATATCA-GGACTTAAAGTCCGCAGGCTATATGCGGGAAA
*
17403690 TATATCCA-GACTTAAAGTCCGTAGGCTATATGCGGGAAA
1 TATAT-CAGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* * * ** *
17403729 TATATCCGGACTTCAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCAGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* *
17403768 TATATCTGGGCTTAAAGTCC
1 TATATCAGGACTTAAAGTCC
17403788 TGAAGGCTTA
Statistics
Matches: 148, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
37 1 0.01
38 33 0.22
39 113 0.76
41 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (39 bp):
TATATCAGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
Found at i:17403676 original size:77 final size:78
Alignment explanation
Indices: 17403574--17403787 Score: 279
Period size: 77 Copynumber: 2.8 Consensus size: 78
17403564 ATTTGAAAAT
* * * *
17403574 TATATCCGGACTTAAAGTCTGCAGGCTATATGCGGGAAATATATCAGGACTTAAAGTCCGCAGGC
1 TATATACGGACTTCAGGTCCGCAGGCTATATGCGGGAAATATATCAGGACTTAAAGTCCGCAGGC
17403639 AATATGC-GGAAA
66 AATATGCGGGAAA
* * *
17403651 TATATATGGACTTCAGGTTCGCAGGCTATATGCGGGAAATATATCCA-GACTTAAAGTCCGTAGG
1 TATATACGGACTTCAGGTCCGCAGGCTATATGCGGGAAATATAT-CAGGACTTAAAGTCCGCAGG
*
17403715 CTATATGCGGGAAA
65 CAATATGCGGGAAA
* ** * * *
17403729 TATATCCGGACTTCAGGTCCGCAGGCTACGTGCTGGAAATATATCTGGGCTTAAAGTCC
1 TATATACGGACTTCAGGTCCGCAGGCTATATGCGGGAAATATATCAGGACTTAAAGTCC
17403788 TGAAGGCTTA
Statistics
Matches: 118, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
77 62 0.53
78 56 0.47
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (78 bp):
TATATACGGACTTCAGGTCCGCAGGCTATATGCGGGAAATATATCAGGACTTAAAGTCCGCAGGC
AATATGCGGGAAA
Found at i:17409666 original size:7 final size:7
Alignment explanation
Indices: 17409650--17409680 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
17409640 TTTTAACACG
*
17409650 CTTACAC
1 CTTACGC
17409657 CTTACGC
1 CTTACGC
17409664 CTTACGC
1 CTTACGC
17409671 CTTACGC
1 CTTACGC
17409678 CTT
1 CTT
17409681 TGCCCGCACG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.16, C:0.42, G:0.10, T:0.32
Consensus pattern (7 bp):
CTTACGC
Found at i:17413925 original size:22 final size:22
Alignment explanation
Indices: 17413900--17413958 Score: 100
Period size: 22 Copynumber: 2.7 Consensus size: 22
17413890 AAAATTAACT
*
17413900 TTTAGCGGCGTTTTTTAAGGTC
1 TTTAGCGGCGTTTTTTAAGGTA
17413922 TTTAGCGGCGTTTTTTAAGGTA
1 TTTAGCGGCGTTTTTTAAGGTA
*
17413944 TTTAGCGGCGCTTTT
1 TTTAGCGGCGTTTTT
17413959 AAGCGCCGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.14, C:0.14, G:0.27, T:0.46
Consensus pattern (22 bp):
TTTAGCGGCGTTTTTTAAGGTA
Found at i:17414119 original size:43 final size:43
Alignment explanation
Indices: 17414059--17414240 Score: 238
Period size: 43 Copynumber: 4.2 Consensus size: 43
17414049 AAAAAAATGA
* * * * *
17414059 CGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTCCATAAATGT
1 CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
* *
17414102 CGCTAAAGGTCAAGACCTTTAACGGCGCTTTTCTCACAAACGC
1 CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
* *
17414145 CGCTAGAGGTCAAGACCTTTAGCGGCGCTTTCCCCACAAACGC
1 CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
* ** * *
17414188 CGCTAGAGGTCTTGATCTTTAGCGGCGCTTTTCCCACAAAAGC
1 CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
17414231 CGCTAAAGGT
1 CGCTAAAGGT
17414241 AATGAAATTT
Statistics
Matches: 122, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 122 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (43 bp):
CGCTAAAGGTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGC
Found at i:17415819 original size:40 final size:39
Alignment explanation
Indices: 17415775--17415967 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
17415765 GTTCAAAACA
* * ** * *
17415775 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
17415815 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
17415855 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
17415894 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
17415933 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
17415968 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:17415886 original size:39 final size:39
Alignment explanation
Indices: 17415805--17415967 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
17415795 TATGGTAACC
* *
17415805 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
17415845 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
17415884 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
17415923 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
17415962 CGCACA
1 CGCACA
17415968 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:17418730 original size:138 final size:138
Alignment explanation
Indices: 17418561--17418970 Score: 750
Period size: 138 Copynumber: 3.0 Consensus size: 138
17418551 TTTTAAAATT
17418561 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
17418626 TTAATGCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
66 TTAATGCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
17418691 TCCAGACG
131 TCCAGACG
17418699 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
17418764 TTAATGCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
66 TTAATGCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
17418829 TCCAGACG
131 TCCAGACG
*
17418837 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTATTATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* * * * *
17418902 TTAATGCCAATTTTTAAAGAGATTACATATGATTCTAAAATTCAAAACAGGGACTCC-ACAAAGC
66 TTAATGCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTA-AAAGC
17418966 ATCCA
130 ATCCA
17418971 TACATTATTA
Statistics
Matches: 265, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
137 1 0.00
138 264 1.00
ACGTcount: A:0.49, C:0.15, G:0.10, T:0.27
Consensus pattern (138 bp):
TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
TTAATGCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
TCCAGACG
Found at i:17420585 original size:46 final size:44
Alignment explanation
Indices: 17420526--17420640 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
17420516 ACAGGACAGA
* *
17420526 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
17420572 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
17420616 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
17420641 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:17420621 original size:44 final size:45
Alignment explanation
Indices: 17420526--17420659 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
17420516 ACAGGACAGA
* *
17420526 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
17420572 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
17420616 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
17420660 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:17423082 original size:12 final size:12
Alignment explanation
Indices: 17423065--17423090 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
17423055 TTTGAGAGTA
17423065 AAAGAAGATGAG
1 AAAGAAGATGAG
17423077 AAAGAAGATGAG
1 AAAGAAGATGAG
17423089 AA
1 AA
17423091 GCGGGTAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.31, T:0.08
Consensus pattern (12 bp):
AAAGAAGATGAG
Found at i:17423401 original size:14 final size:14
Alignment explanation
Indices: 17423382--17423423 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
17423372 TAAATATTAA
17423382 ATTTTTAAGTTTTTT
1 ATTTTTAA-TTTTTT
*
17423397 ATTTTTTATTTTTT
1 ATTTTTAATTTTTT
17423411 ATTTTTTAATTTT
1 A-TTTTTAATTTT
17423424 AAAATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (14 bp):
ATTTTTAATTTTTT
Done.