Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 65 of 425
Found at i:17972736 original size:25 final size:26
Alignment explanation
Indices: 17972668--17972774 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
17972658 TGGTACAAAT
*
17972668 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
17972694 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
17972720 TGATAATGG-TTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
17972745 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
17972771 TGAT
1 TGAT
17972775 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
25 25 0.32
26 53 0.68
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:17972744 original size:51 final size:52
Alignment explanation
Indices: 17972668--17972774 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
17972658 TGGTACAAAT
17972668 TGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTCCA
* *
17972720 TGATAATGG-TTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTCCA
17972771 TGAT
1 TGAT
17972775 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 44 0.83
52 9 0.17
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (52 bp):
TGATAATGGATTAGGTAAATATTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:17973961 original size:8 final size:8
Alignment explanation
Indices: 17973948--17973977 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
17973938 AGATCGGCAC
17973948 AAGCCGAA
1 AAGCCGAA
17973956 AAGCCGAA
1 AAGCCGAA
*
17973964 ATGCCGAA
1 AAGCCGAA
17973972 AAGCCG
1 AAGCCG
17973978 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:17974446 original size:54 final size:54
Alignment explanation
Indices: 17974364--17974507 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
17974354 TGGAGGAAGC
*
17974364 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
17974418 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
17974472 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
17974508 ACTTCGTCAC
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 6 0.07
54 80 0.93
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:17974518 original size:27 final size:27
Alignment explanation
Indices: 17974367--17974524 Score: 182
Period size: 27 Copynumber: 5.9 Consensus size: 27
17974357 AGGAAGCGTC
*
17974367 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
17974394 CTGGTGGCTCTGCCATATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
17974421 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
17974448 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
17974475 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
17974502 CTGGTGACT-TCGTCACAATATCT
1 CTGGTGGCTCT-GCCACAATATCT
17974525 AGCAGCCTCG
Statistics
Matches: 114, Mismatches: 9, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
26 10 0.09
27 102 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:17974519 original size:81 final size:80
Alignment explanation
Indices: 17974367--17974524 Score: 205
Period size: 81 Copynumber: 2.0 Consensus size: 80
17974357 AGGAAGCGTC
* *
17974367 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
17974432 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
17974448 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
17974511 -TCGTCACAATATCT
64 AT-GCCACAATATCT
17974525 AGCAGCCTCG
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
80 16 0.24
81 52 0.76
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:17986214 original size:51 final size:50
Alignment explanation
Indices: 17986128--17986479 Score: 420
Period size: 51 Copynumber: 6.9 Consensus size: 50
17986118 ACAGATACCC
* * * * *
17986128 AGTGGCCTGCACATAGTAACACCCTTGTAGT-CAAAGCTACCTTCTTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTA-TTTATTCACAA
* ** * *
17986179 AGTGGCCTTCACATAGTACCACACTTCTAACCAAAGCTATCTTTCTTGACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTA--TTTATTCACAA
* * ** * *
17986231 AGTGGCCTTCACATGGTACCACACTTGTGACC-AAGCTAGCTCTTCTCAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTATTCACAA
17986280 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTA-TTTATTCACAA
*
17986331 AGTGGCCTTCACATAGTACCTCACTTGTGTCCAAAGCTATTATATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATT-TATTCACAA
* * *
17986382 AGTGGCCTTTACATAGTACCACACTTGTGTCCAAAGCTATTATATTAAAAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATT-TATTCACAA
* *
17986433 AATGGCCTTCACATAGTACCATACTTGTGTCCAAAGCTATTTTATTC
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTA-TTTATTC
17986480 TTAAGGTTCA
Statistics
Matches: 265, Mismatches: 30, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
49 37 0.14
50 8 0.03
51 179 0.68
52 41 0.15
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (50 bp):
AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTATTCACAA
Found at i:17986419 original size:152 final size:153
Alignment explanation
Indices: 17986128--17986479 Score: 449
Period size: 152 Copynumber: 2.3 Consensus size: 153
17986118 ACAGATACCC
* * * ** *
17986128 AGTGGCCTGCACATAGTAACACCCTTGTAGT-CAAAGCTACCTTCTTCACAAAGTGGCCTTCACA
1 AGTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAGTGGCCTTCACA
* * * *
17986192 TAGTACCACACTTCTAACCAAAGCTATCTTTCTTGACAAAGTGGCCTTCACATGGTACCACACTT
65 TAGTACCACACTTCTAACCAAAGCTATCTATATTCACAAAGTGGCCTTCACATAGTACCACACTT
* * ***
17986257 GTGACCAAGCTA-GCTCTTCTCAA
130 GTGACCAAGCTATGATATTAAAAA
17986280 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCTTCACAT
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCTTCACAT
* * ** *
17986345 AGTACCTCACTTGTGTCCAAAGCTAT-TATATTCACAAAGTGGCCTTTACATAGTACCACACTTG
66 AGTACCACACTTCTAACCAAAGCTATCTATATTCACAAAGTGGCCTTCACATAGTACCACACTTG
* *
17986409 TGTCCAAAGCTATTATATTAAAAA
131 TGACC-AAGCTATGATATTAAAAA
* *
17986433 AATGGCCTTCACATAGTACCATACTTGTGTCCAAAGCTATTTTATTC
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
17986480 TTAAGGTTCA
Statistics
Matches: 173, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
151 39 0.23
152 84 0.49
153 50 0.29
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (153 bp):
AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGGCCTTCACAT
AGTACCACACTTCTAACCAAAGCTATCTATATTCACAAAGTGGCCTTCACATAGTACCACACTTG
TGACCAAGCTATGATATTAAAAA
Found at i:17986535 original size:28 final size:28
Alignment explanation
Indices: 17986503--17986597 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
17986493 GGGAAATTTC
17986503 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
* *
17986531 TCACTTAGCACATTGCCATGGGCTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
17986559 TCACTTAG----ATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
17986583 TCACTTAGTACAATG
1 TCACTTAGCACAATG
17986598 TCATATCCTA
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
24 22 0.37
28 37 0.63
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:17986580 original size:24 final size:25
Alignment explanation
Indices: 17986515--17986590 Score: 100
Period size: 24 Copynumber: 3.0 Consensus size: 25
17986505 ACTTAGCACA
17986515 ATGCCATGGACTTATTTCACTTAGCAC
1 ATGCCATGGACTTATTTCACTTAG--C
*
17986542 ATTGCCATGGGCTTATTTCACTTAG-
1 A-TGCCATGGACTTATTTCACTTAGC
*
17986567 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
17986591 TACAATGTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
24 22 0.48
25 1 0.02
27 1 0.02
28 22 0.48
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.38
Consensus pattern (25 bp):
ATGCCATGGACTTATTTCACTTAGC
Found at i:17987917 original size:20 final size:22
Alignment explanation
Indices: 17987894--17987948 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
17987884 CTAATACTTG
17987894 CAAACATAT-ACCAA-CCAATT
1 CAAACATATAACCAAGCCAATT
*
17987914 CAAACATTATAACTAAGCCAATT
1 CAAACA-TATAACCAAGCCAATT
* *
17987937 CTAACATCTAAC
1 CAAACATATAAC
17987949 ATGATATATC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 6 0.21
21 3 0.10
22 9 0.31
23 11 0.38
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (22 bp):
CAAACATATAACCAAGCCAATT
Found at i:17993947 original size:40 final size:39
Alignment explanation
Indices: 17993901--17994030 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
17993891 CGGAATACAA
*
17993901 CCGGATATAACCACGTGCACGAATGCCTTCGGATCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
17993941 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
17993981 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
17994021 CCGGATATAA
1 CCGGATATAA
17994031 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:17997473 original size:23 final size:22
Alignment explanation
Indices: 17997437--17997479 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
17997427 AACCTATACC
17997437 AACCAATTCAAACATTATAACCA
1 AACCAATTCAAACATT-TAACCA
**
17997460 AACCAATTTTAACATTTAAC
1 AACCAATTCAAACATTTAAC
17997480 ATGATATATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (22 bp):
AACCAATTCAAACATTTAACCA
Found at i:17998291 original size:57 final size:58
Alignment explanation
Indices: 17998202--17998319 Score: 220
Period size: 57 Copynumber: 2.1 Consensus size: 58
17998192 ATCAAAGCAT
17998202 ATTAAAGTCACATTCTAAACATTACCAAATTCCCAACCATAAACATACCAAAATGACC
1 ATTAAAGTCACATTCTAAACATTACCAAATTCCCAACCATAAACATACCAAAATGACC
*
17998260 ATTAAA-TCACATTCTAAACATTACCAAATTCCCAACCATGAACATACCAAAATGACC
1 ATTAAAGTCACATTCTAAACATTACCAAATTCCCAACCATAAACATACCAAAATGACC
17998317 ATT
1 ATT
17998320 TCACTTGGTC
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
57 53 0.90
58 6 0.10
ACGTcount: A:0.46, C:0.27, G:0.03, T:0.24
Consensus pattern (58 bp):
ATTAAAGTCACATTCTAAACATTACCAAATTCCCAACCATAAACATACCAAAATGACC
Found at i:17999450 original size:43 final size:43
Alignment explanation
Indices: 17999402--17999558 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
17999392 AGCTCGTACA
*
17999402 ATGCCAACGTCCCAGACTTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * * *
17999445 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * * *
17999487 ATGCCAATGTCCTAGACATGGTCTTAGATGTAAATCACCA-ATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AATATCG
* *
17999531 ATGCCAACGTCCCAAACGTGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
17999559 CGATAACACA
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 27 0.29
43 39 0.42
44 26 0.28
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
Found at i:17999544 original size:86 final size:85
Alignment explanation
Indices: 17999402--17999561 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 85
17999392 AGCTCGTACA
* *
17999402 ATGCCAACGTCCCAGACTTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG-GG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAAC-GTGG
17999466 TCTTACACGAAATCATATACG
65 TCTTACACGAAATCATATACG
* * * *
17999487 ATGCCAATGTCCTAGACATGGTCTTAGATGTAAATCACCA-ATCGATGCCAAC-GTCCCAAACGT
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AATATCGATGCC-ACTGTCCCAAACGT
17999550 GGTCTTACACGA
63 GGTCTTACACGA
17999562 TAACACATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
85 28 0.43
86 34 0.52
87 3 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACGTGGT
CTTACACGAAATCATATACG
Found at i:18001774 original size:15 final size:14
Alignment explanation
Indices: 18001748--18001834 Score: 79
Period size: 15 Copynumber: 6.0 Consensus size: 14
18001738 TATTCTAATA
*
18001748 CTATTATTATTTAT
1 CTATTTTTATTTAT
18001762 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
*
18001777 CTATTTATATTTAT
1 CTATTTTTATTTAT
*
18001791 ACTATTATTATATT-T
1 -CTATTTTTAT-TTAT
18001806 CTATTTATTATATT-T
1 CTATTT-TTAT-TTAT
*
18001821 CTATTTCTATTTAT
1 CTATTTTTATTTAT
18001835 TTACTAATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
13 2 0.03
14 22 0.35
15 36 0.58
16 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:18001780 original size:29 final size:28
Alignment explanation
Indices: 18001748--18001834 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 28
18001738 TATTCTAATA
18001748 CTATTATTATTTATCTAATTTTTATTTAT
1 CTATTATTATTTATCT-ATTTTTATTTAT
*
18001777 CTATT-TATATTTATACTATTATTATATT-T
1 CTATTAT-TATTTAT-CTATTTTTAT-TTAT
*
18001806 CTATTTATTATATT-TCTATTTCTATTTAT
1 CTA-TTATTAT-TTATCTATTTTTATTTAT
18001835 TTACTAATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
28 3 0.06
29 32 0.67
30 10 0.21
31 3 0.06
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (28 bp):
CTATTATTATTTATCTATTTTTATTTAT
Found at i:18001793 original size:44 final size:43
Alignment explanation
Indices: 18001745--18001865 Score: 133
Period size: 44 Copynumber: 2.8 Consensus size: 43
18001735 TGTTATTCTA
18001745 ATACTATTATTATTTATCTAATTT-TTAT-TTATCTATTTATATTT
1 ATACTATTATTATTT-TCT-ATTTATTATATT-TCTATTTATATTT
*
18001789 ATACTATTATTATATTTCTATTTATTATATTTCTATTTCTATTT
1 ATACTATTATTAT-TTTCTATTTATTATATTTCTATTTATATTT
* *
18001833 ATTTACTAATATTATTTTC-A-TTATTATTTTTCT
1 A--TACTATTATTATTTTCTATTTATTATATTTCT
18001866 TATATATGTT
Statistics
Matches: 69, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
43 16 0.23
44 34 0.49
45 8 0.12
46 11 0.16
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (43 bp):
ATACTATTATTATTTTCTATTTATTATATTTCTATTTATATTT
Found at i:18001860 original size:29 final size:31
Alignment explanation
Indices: 18001768--18001861 Score: 81
Period size: 31 Copynumber: 3.1 Consensus size: 31
18001758 TTATCTAATT
* * * *
18001768 TTTATTTATCTAT-TTATATTTATACTATTA
1 TTTATTTCTATATATTATATTTCTATTATTA
*
18001798 TTATATTTCTATTTATTATATTTCTATT-TCTA
1 TT-TATTTCTATATATTATATTTCTATTAT-TA
18001830 TTTATTTACTA-ATATTAT-TTTC-ATTATTA
1 TTTATTT-CTATATATTATATTTCTATTATTA
18001859 TTT
1 TTT
18001862 TTCTTATATA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
29 8 0.15
30 7 0.13
31 20 0.38
32 18 0.34
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (31 bp):
TTTATTTCTATATATTATATTTCTATTATTA
Found at i:18001973 original size:3 final size:3
Alignment explanation
Indices: 18001965--18002161 Score: 199
Period size: 3 Copynumber: 65.7 Consensus size: 3
18001955 TTTAAAACTT
18001965 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TCTA TGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA TTA
** * * *
18002010 -TA TTTA TGTA TTA GCA TCA TTA TT- TTT TTA TTC TT- TTA -TA TTA
1 TTA -TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
18002053 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTC TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
18002101 TTA GTA CTA TTA TTTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
*
18002148 TAA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
18002162 TTTTTTAAAA
Statistics
Matches: 165, Mismatches: 18, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
2 11 0.07
3 139 0.84
4 15 0.09
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:18002511 original size:3 final size:3
Alignment explanation
Indices: 18002470--18002521 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
18002460 TAAGCTTTAG
* * *
18002470 ATT ACTT ATT ATT -TAT ATT AAT ATT AAT ATT AAT ATT ATT ATT ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
18002516 ATT ATT
1 ATT ATT
18002522 TAGACTATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
2 1 0.03
3 35 0.88
4 4 0.10
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:18008693 original size:44 final size:44
Alignment explanation
Indices: 18008645--18008840 Score: 162
Period size: 44 Copynumber: 4.4 Consensus size: 44
18008635 ATGATTGCAG
* *
18008645 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGATGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * * * * ** *
18008689 ATCTTATCTCCATGTAGCAGCAATGGAGCAGATTTAAG-CCACTA
1 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGACGGCGA
** * * ** **
18008733 GCCTTATCTCCCTAAGCAGTAGTGGAACGGGCTGAAGATTGC-A
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
*
18008776 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* *
18008821 GTCTTATCTCCATATAGCAG
1 ATCTTATCTCCCTA-AGCAG
18008841 CAATTGAACA
Statistics
Matches: 112, Mismatches: 35, Indels: 9
0.72 0.22 0.06
Matches are distributed among these distances:
43 17 0.15
44 70 0.62
45 25 0.22
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
Found at i:18008827 original size:88 final size:87
Alignment explanation
Indices: 18008603--18008840 Score: 194
Period size: 88 Copynumber: 2.7 Consensus size: 87
18008593 TTCGACTAGC
* ** * **
18008603 CTTATCTCCCTAAGCAGTAGTGGAAC-GGGCGGATGATTGCAGATCTTATCTCCCTAAGCAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGACCGCAG-TCTTATCTCCCTAAGCAGTAG
** *
18008667 TGGAGTAGATTGAAGATGGCGAAT
64 TGGAACAGACTGAAGATGGCGAAT
* * * * ** * *
18008691 CTTATCTCCATGTAGCAGCAATGGAGCAGATTTAAG-CCACTAGCCTTATCTCCCTAAGCAGTAG
1 CTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGACCGC-AGTCTTATCTCCCTAAGCAGTAG
* * *
18008755 TGGAACGGGCTGAAGATTGC-AGAT
64 TGGAACAGACTGAAGATGGCGA-AT
* *
18008779 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAGTCTTATCTCCATATAGCAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCGC-AGTCTTATCTCCCTA-AGCAG
18008841 CAATTGAACA
Statistics
Matches: 113, Mismatches: 31, Indels: 11
0.73 0.20 0.07
Matches are distributed among these distances:
87 20 0.18
88 72 0.64
89 20 0.18
90 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (87 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACCGCAGTCTTATCTCCCTAAGCAGTAGTG
GAACAGACTGAAGATGGCGAAT
Found at i:18008839 original size:132 final size:132
Alignment explanation
Indices: 18008597--18009273 Score: 1043
Period size: 132 Copynumber: 5.1 Consensus size: 132
18008587 ACAAATTTCG
* *
18008597 ACTAGCCTTATCTCCCTAAGCAGTAGTGGAACGGGCGGATGATTGCAGATCTTATCTCCCTAAGC
1 ACTAGCCTTATCTCCCTAAGCAGTAGTGGAACGGGCTGAAGATTGCAGATCTTATCTCCCTAAGC
* *
18008662 AGTAGTGGAGTAGATTGAAGATGGCGAATCTTATCTCCATGTAGCAGCAATGGAGCAGATTTAAG
66 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTAGCAGCAATGGAGCAGATTTAAG
18008727 CC
131 CC
18008729 ACTAGCCTTATCTCCCTAAGCAGTAGTGGAACGGGCTGAAGATTGCAGATCTTATCTCCCTAAGC
1 ACTAGCCTTATCTCCCTAAGCAGTAGTGGAACGGGCTGAAGATTGCAGATCTTATCTCCCTAAGC
* * * * * *
18008794 AGTAGTGGAGCAGATCGAAGACGGCGAGTCTTATCTCCATATAGCAGCAATTGAACAGCTTTAAG
66 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTAGCAGCAATGGAGCAGATTTAAG
18008859 CC
131 CC
* * * * *
18008861 ACTAGCCTTATCTCCCTAAGCAATAGTGGAATGGGCTGAAGATTGCAGATTTTATCTCTCTACGC
1 ACTAGCCTTATCTCCCTAAGCAGTAGTGGAACGGGCTGAAGATTGCAGATCTTATCTCCCTAAGC
* * *
18008926 AATAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAT
66 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTAGCAGCAATGGAGCAGATTTAAG
18008991 CC
131 CC
* * * * *
18008993 ACTAGCCTTATCTCCTTAAGCAGTAGTGGAACGGGCTAAAAATTGTAGATCTTATCTCCATAAGC
1 ACTAGCCTTATCTCCCTAAGCAGTAGTGGAACGGGCTGAAGATTGCAGATCTTATCTCCCTAAGC
*
18009058 AGTAGTGGA-CTAGATCGAAGATGGTGAATCTTATCTCCATGTAGC-GACAATGGAGCAGATTTA
66 AGTAGTGGAGC-AGATCGAAGATGGCGAATCTTATCTCCATGTAGCAG-CAATGGAGCAGATTTA
18009121 AGCC
129 AGCC
* * *
18009125 ACTAGCCTTATCTCCCTAAGCAGTAGTGGAACGGGCTAAAAATTGCAGATCTTATCTCCCTAACC
1 ACTAGCCTTATCTCCCTAAGCAGTAGTGGAACGGGCTGAAGATTGCAGATCTTATCTCCCTAAGC
* * *
18009190 AGTAGTGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTAGCGGAAATGGAGCAGATTTAAG
66 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTAGCAGCAATGGAGCAGATTTAAG
18009255 CC
131 CC
*
18009257 ACCAGCCTTATCTCCCT
1 ACTAGCCTTATCTCCCT
18009274 GAAGTTGCAG
Statistics
Matches: 496, Mismatches: 45, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
131 2 0.00
132 493 0.99
133 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (132 bp):
ACTAGCCTTATCTCCCTAAGCAGTAGTGGAACGGGCTGAAGATTGCAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTAGCAGCAATGGAGCAGATTTAAG
CC
Found at i:18009374 original size:177 final size:176
Alignment explanation
Indices: 18009131--18009541 Score: 599
Period size: 177 Copynumber: 2.3 Consensus size: 176
18009121 AGCCACTAGC
** * * * *
18009131 CTTATCTCCCTAAGCAGTAGTGGAACGGGCTAAAAATTGCAGATCTTATCTCCCTAACCAGTAGT
1 CTTATCTCCCTAAGTTGTAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCCTAACCAGTAGT
* * * *
18009196 GGAGTAGATCGAAGATG-GCGAATCTTATCTCCATGTAGCGGAAATGGAGCAGATTTAAGCCACC
66 GGAGTAGATCGAAGACGAG-GAATATTATCTCCATGTAGCGAAAATGGAGCAAATTTAAGCCACC
18009260 AGCCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTCAAGATACAAGT
130 AGCCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTCAAGATACAAGT
* * * *
18009307 CTTATCTCCCTGAAGTTGTAGTGGAGCTGACTGAAAATTGCATATCTTATCTCTCTAAGCAGTAG
1 CTTATCTCCCT-AAGTTGTAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCCTAACCAGTAG
* * *
18009372 TGGAGTAGATTGAATACGAGGAATATTATCTCCATGTAGCGAAAATGGAGCAAATTTAAGTCACC
65 TGGAGTAGATCGAAGACGAGGAATATTATCTCCATGTAGCGAAAATGGAGCAAATTTAAGCCACC
*
18009437 AGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTCAAGATACAAGT
130 AGCCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTCAAGATACAAGT
* * *
18009484 CTTATCTCCCTAAAGTTGTAGTGGAGCAGACAGAAGATAGCAGATCTTATCTCCCTAA
1 CTTATCTCCCT-AAGTTGTAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCCTAA
18009542 AGTTGCAGCA
Statistics
Matches: 209, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
176 11 0.05
177 197 0.94
178 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (176 bp):
CTTATCTCCCTAAGTTGTAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCCTAACCAGTAGT
GGAGTAGATCGAAGACGAGGAATATTATCTCCATGTAGCGAAAATGGAGCAAATTTAAGCCACCA
GCCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTCAAGATACAAGT
Found at i:18009465 original size:44 final size:44
Alignment explanation
Indices: 18009417--18009549 Score: 117
Period size: 44 Copynumber: 3.0 Consensus size: 44
18009407 GTAGCGAAAA
* * *
18009417 TGGAGCAAATTTAAG-TCACCAGCCTTATCTCCCTGAAGTTGCAG
1 TGGAGCAAATTCAAGAT-ACAAGCCTTATCTCCCTAAAGTTGCAG
** * *
18009461 TGGAGCAGGTTCAAGATACAAGTCTTATCTCCCTAAAGTTGTAG
1 TGGAGCAAATTCAAGATACAAGCCTTATCTCCCTAAAGTTGCAG
* *** *
18009505 TGGAGCAGACAGAAGATAGC-AGATCTTATCTCCCTAAAGTTGCAG
1 TGGAGCAAATTCAAGATA-CAAG-CCTTATCTCCCTAAAGTTGCAG
18009550 CAGAGTAGAT
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
44 51 0.69
45 23 0.31
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
TGGAGCAAATTCAAGATACAAGCCTTATCTCCCTAAAGTTGCAG
Found at i:18009545 original size:45 final size:44
Alignment explanation
Indices: 18009440--18009549 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 44
18009430 AGTCACCAGC
* ***
18009440 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTCAAGATACAAGT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACACAAGATACAAGT
* *
18009484 CTTATCTCCCTAAAGTTGTAGTGGAGCAGACAGAAGATAGC-AGAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACACAAGATA-CAAG-T
18009529 CTTATCTCCCTAAAGTTGCAG
1 CTTATCTCCCTAAAGTTGCAG
18009550 CAGAGTAGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
44 35 0.61
45 22 0.39
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTAAAGTTGCAGTGGAGCAGACACAAGATACAAGT
Found at i:18010556 original size:15 final size:15
Alignment explanation
Indices: 18010538--18010566 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
18010528 ATTTATCTAT
18010538 TTATATTTCTATTTA
1 TTATATTTCTATTTA
18010553 TTATATTTCTATTT
1 TTATATTTCTATTT
18010567 CTATTAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:18010565 original size:21 final size:20
Alignment explanation
Indices: 18010527--18010571 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
18010517 ACACTATTAT
*
18010527 TATTTATCTATTTATATTTC
1 TATTTATATATTTATATTTC
*
18010547 TATTTATTATATTTCTATTTC
1 TATTTA-TATATTTATATTTC
18010568 TATT
1 TATT
18010572 AACATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (20 bp):
TATTTATATATTTATATTTC
Found at i:18010578 original size:27 final size:29
Alignment explanation
Indices: 18010523--18010586 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 29
18010513 TCTAACACTA
*
18010523 TTATTAT-TTATCTATTTATATTTCTA-T
1 TTATTATATTATCTATTTATATTACTATT
*
18010550 TTATTATATT-TCTATTTCTATTAAC-ATT
1 TTATTATATTATCTATTTATATT-ACTATT
18010578 TTATT-TATT
1 TTATTATATT
18010587 GATTTATATC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 23 0.72
28 9 0.28
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.66
Consensus pattern (29 bp):
TTATTATATTATCTATTTATATTACTATT
Found at i:18010652 original size:3 final size:3
Alignment explanation
Indices: 18010644--18010849 Score: 237
Period size: 3 Copynumber: 68.7 Consensus size: 3
18010634 TTTAAAACTT
18010644 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * *
18010691 TGTA TTA -TA TTTA TATA TTA GTA TCA TTA CTT- TT- TTA TTC TT- TTA
1 T-TA TTA TTA -TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * *
18010736 -TA TTA TTA TTA TCA TTA TTA TTA CTA TTA TTA CTA TTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
*
18010784 TTA TTA TTA TTA CTA TTA TTA TTA TTA TTTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
18010830 TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
18010850 TAAAACCATT
Statistics
Matches: 177, Mismatches: 14, Indels: 24
0.82 0.07 0.11
Matches are distributed among these distances:
2 13 0.07
3 147 0.83
4 17 0.10
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:18011177 original size:3 final size:3
Alignment explanation
Indices: 18011150--18011207 Score: 73
Period size: 3 Copynumber: 19.0 Consensus size: 3
18011140 TAAGCTTTAG
* *
18011150 ATT ACTT ATT ATT -TAT ATT AAT ATT ATT AAT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
18011196 ATT ATT ATT ATT
1 ATT ATT ATT ATT
18011208 TAGACTATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
2 1 0.02
3 43 0.90
4 4 0.08
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:18012122 original size:23 final size:23
Alignment explanation
Indices: 18012092--18012143 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
18012082 ACATATGCCA
18012092 TTATACCAAAACGAGTTTACTAT
1 TTATACCAAAACGAGTTTACTAT
*
18012115 TTATACCAAAATGAGTTTACTAT
1 TTATACCAAAACGAGTTTACTAT
18012138 TTATAC
1 TTATAC
18012144 TAAGACGAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (23 bp):
TTATACCAAAACGAGTTTACTAT
Found at i:18014289 original size:57 final size:57
Alignment explanation
Indices: 18014181--18014320 Score: 133
Period size: 57 Copynumber: 2.5 Consensus size: 57
18014171 CTCATTACTG
* ** * * * * *
18014181 AAAGGATTTAGCCCAGATGGGTAATCCTGATATAAGTCCTCTTGAGCTATGTTATAG
1 AAAGGATTTAGCCCTGACAGGTAATCCAGATACAAGTCCTCTAGAGCTATGTCATAA
**
18014238 ATTGGATTTAGCCCTGACAGGTAATCCAGAT-CAAGCTCCT-TAGAGCATATGTCATAA
1 AAAGGATTTAGCCCTGACAGGTAATCCAGATACAAG-TCCTCTAGAGC-TATGTCATAA
*
18014295 AAAGGATTTAG-CCTGGACTGGTAATC
1 AAAGGATTTAGCCCT-GACAGGTAATC
18014321 ATGTTGTATA
Statistics
Matches: 67, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
56 11 0.16
57 56 0.84
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (57 bp):
AAAGGATTTAGCCCTGACAGGTAATCCAGATACAAGTCCTCTAGAGCTATGTCATAA
Found at i:18017770 original size:29 final size:29
Alignment explanation
Indices: 18017738--18017898 Score: 155
Period size: 29 Copynumber: 5.6 Consensus size: 29
18017728 AATTTAAGCC
*** *
18017738 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACATAGTGCCATATTTTTCCAGCT
** *
18017767 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATTTTTCCAGCT
* *
18017796 TGCACACATAGTGTCATATTTTTCCAGCAT
1 CGCACACATAGTGCCATATTTTTCCAGC-T
* * *
18017826 -GCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACATAGTGCCATATTTTTCCAGCT
* *
18017854 CGCACACTTAGTGCCATATATTTCCAGCAT
1 CGCACACATAGTGCCATATTTTTCCAGC-T
*
18017884 -GCACACTTAGTGCCA
1 CGCACACATAGTGCCA
18017899 ATCTCGTCAC
Statistics
Matches: 112, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
29 111 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACATAGTGCCATATTTTTCCAGCT
Found at i:18029739 original size:15 final size:15
Alignment explanation
Indices: 18029712--18029753 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
18029702 TATTTTTCAC
18029712 AAATAAATAAAAATA
1 AAATAAATAAAAATA
18029727 AAATAGAAT-AAAATA
1 AAATA-AATAAAAATA
*
18029742 AATAAAAATAAA
1 AA-ATAAATAAA
18029754 GAACACATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (15 bp):
AAATAAATAAAAATA
Found at i:18030728 original size:29 final size:29
Alignment explanation
Indices: 18030696--18030856 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
18030686 AATTTAAGCC
* *** *
18030696 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCT
** * *
18030725 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCT
* * * *
18030754 TGCACACATAGTGTCATATTTTTCCAGCAT
1 CGCACACTTAGTGCCATATATTTCCAGC-T
*
18030784 -GCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCT
*
18030812 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCT
18030841 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
18030857 ATCTCGTCAC
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
29 113 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCT
Found at i:18033284 original size:40 final size:40
Alignment explanation
Indices: 18033229--18033472 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
18033219 TGAATGGTAC
* * * * **
18033229 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
18033269 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
18033309 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
18033349 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
18033389 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
18033429 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
18033469 CCGG
1 CCGG
18033473 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:18040558 original size:123 final size:123
Alignment explanation
Indices: 18040339--18040677 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
18040329 GAATTATGTG
*
18040339 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
18040404 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
18040462 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
18040527 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
18040585 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
18040650 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
18040678 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:18040701 original size:40 final size:40
Alignment explanation
Indices: 18040646--18040889 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
18040636 TGAATGATAC
* * * * **
18040646 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
18040686 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
18040726 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
18040766 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
18040806 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
18040846 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
18040886 CCGG
1 CCGG
18040890 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:18046572 original size:5 final size:5
Alignment explanation
Indices: 18046564--18046612 Score: 57
Period size: 5 Copynumber: 9.8 Consensus size: 5
18046554 AATAATGAGG
*
18046564 AAAAT AAAA- ATAAAT AATAT AAAA- AATAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT A-AAAT AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAA
18046613 GGGGTAGCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
4 3 0.08
5 32 0.84
6 3 0.08
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:18046577 original size:30 final size:28
Alignment explanation
Indices: 18046541--18046607 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 28
18046531 TAAGAAGAAC
*
18046541 AAATAAAAA-ATAAAATAATGAGGAAAATAA
1 AAATAAAAATATAAAA-AAT-AAGAAAAT-A
*
18046571 AAATAAATAATATAAAAAATAATAAAATA
1 AAATAAA-AATATAAAAAATAAGAAAATA
18046600 AAATAAAA
1 AAATAAAA
18046608 TAAAAGGGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 1 0.03
29 8 0.24
30 13 0.39
31 5 0.15
32 6 0.18
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.19
Consensus pattern (28 bp):
AAATAAAAATATAAAAAATAAGAAAATA
Found at i:18046590 original size:16 final size:15
Alignment explanation
Indices: 18046541--18046612 Score: 60
Period size: 15 Copynumber: 4.7 Consensus size: 15
18046531 TAAGAAGAAC
18046541 AAATAA-AAAATAAA
1 AAATAATAAAATAAA
**
18046555 ATAATGAGGAAAAT-AA
1 A-AAT-AATAAAATAAA
*
18046571 AAATAAATAATATAAA
1 AAAT-AATAAAATAAA
18046587 AAATAATAAAATAAA
1 AAATAATAAAATAAA
18046602 ATAA-AATAAAA
1 A-AATAATAAAA
18046613 GGGGTAGCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
14 1 0.02
15 29 0.62
16 12 0.26
17 5 0.11
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.19
Consensus pattern (15 bp):
AAATAATAAAATAAA
Found at i:18051010 original size:19 final size:19
Alignment explanation
Indices: 18050986--18051025 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
18050976 TCCTCTCCAC
18050986 AGGGATTGTATTTGTGCTA
1 AGGGATTGTATTTGTGCTA
18051005 AGGGATTGTATTTGTGCTA
1 AGGGATTGTATTTGTGCTA
18051024 AG
1 AG
18051026 TCACTTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.05, G:0.33, T:0.40
Consensus pattern (19 bp):
AGGGATTGTATTTGTGCTA
Found at i:18053380 original size:39 final size:39
Alignment explanation
Indices: 18053326--18053582 Score: 392
Period size: 39 Copynumber: 6.5 Consensus size: 39
18053316 TAATGGAGAA
*
18053326 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
18053365 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
18053404 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTTGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
18053443 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
18053482 TTATATCCGGGTTAA-ACCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCC-GAAGGCATTCGTGCTGGTG
* * *
18053521 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
18053560 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
18053583 CATGCTTTGT
Statistics
Matches: 203, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
38 3 0.01
39 180 0.89
40 17 0.08
41 3 0.01
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:18065145 original size:43 final size:43
Alignment explanation
Indices: 18064975--18065146 Score: 156
Period size: 43 Copynumber: 4.0 Consensus size: 43
18064965 CATAGGATTC
* *
18064975 CGATATGTG-TTATCATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGATATTTGATTA-CATGTAAGACCACGTCTGGGACGTTGGCAT
* * * *
18065018 CAAT-TTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATT-TGA-TTACATGTAAGACCACGTCTGGGACGTTGGCAT
* *** * *
18065062 CG-TATATGATTTTGTGTAAGACC-CTGTCAGGGATAG-TGGCAT
1 CGATATTTGATTACATGTAAGACCAC-GTCTGGGA-CGTTGGCAT
18065104 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
18065147 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 20, Indels: 18
0.72 0.14 0.13
Matches are distributed among these distances:
42 29 0.29
43 39 0.39
44 29 0.29
45 3 0.03
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:18065146 original size:85 final size:86
Alignment explanation
Indices: 18064990--18065146 Score: 214
Period size: 85 Copynumber: 1.8 Consensus size: 86
18064980 TGTGTTATCA
* * *
18064990 TGTAAGACCACGTCTGGGATGTTGGCATCAATTTGTGATTTACGTGTAAGACCATGTCTGGGACA
1 TGTAAGACCACGTCAGGGATGTTGGCATCAATTTGTGATTTACATGTAAGACCACGTCTGGGACA
18065055 TTGGCATCGTATATGATTTTG
66 TTGGCATCGTATATGATTTTG
*
18065076 TGTAAGACC-CTGTCAGGGATAG-TGGCATCGATATT-TGA-TTACATGTAAGACCACGTCTGGG
1 TGTAAGACCAC-GTCAGGGAT-GTTGGCATCAAT-TTGTGATTTACATGTAAGACCACGTCTGGG
*
18065137 ACGTTGGCAT
63 ACATTGGCAT
18065147 TGTACGAGCT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 31 0.49
86 29 0.46
87 3 0.05
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (86 bp):
TGTAAGACCACGTCAGGGATGTTGGCATCAATTTGTGATTTACATGTAAGACCACGTCTGGGACA
TTGGCATCGTATATGATTTTG
Found at i:18068034 original size:46 final size:46
Alignment explanation
Indices: 18067981--18068156 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
18067971 TATTTGGGCA
18067981 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
* *** * ** *
18068027 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACT-AGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTGA-GCG
* * *
18068074 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
* *
18068120 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18068157 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 71 0.66
47 36 0.34
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCG
Found at i:18068136 original size:93 final size:93
Alignment explanation
Indices: 18067977--18068148 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
18067967 GGGATATTTG
* * *
18067977 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
18068042 TTGAGTTCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
18068070 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
18068135 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
18068149 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:18073608 original size:21 final size:21
Alignment explanation
Indices: 18073584--18073623 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
18073574 AGTATTACGA
18073584 TTATT-AATATTATTTTTTACC
1 TTATTGAATATT-TTTTTTACC
*
18073605 TTATTGATTATTTTTTTTA
1 TTATTGAATATTTTTTTTA
18073624 TTTCTGGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (21 bp):
TTATTGAATATTTTTTTTACC
Found at i:18076844 original size:44 final size:43
Alignment explanation
Indices: 18076702--18076866 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
18076692 AGCTCGTACA
** * *
18076702 ATGCCAACGTCCCAGATGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAA-ATTG
* * *
18076745 ATGCC-ACTGTCCTAGACAGGGTCTTACAC-AAAATC-AAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAAAT-TG
*
18076787 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTAAAATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATC-AAAATTG
* * *
18076831 ATGCCAACGTCCCAGATATGGTGTTAAACG-AAATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA
18076867 CATATCGGAA
Statistics
Matches: 100, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 30 0.30
43 36 0.36
44 28 0.28
45 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAAATTG
Found at i:18081307 original size:40 final size:40
Alignment explanation
Indices: 18081262--18081428 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
18081252 CGGAATATAA
18081262 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
18081302 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
18081342 CCGGACATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
18081382 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
18081421 CCGGATAT
1 CCGGATAT
18081429 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:18082689 original size:58 final size:57
Alignment explanation
Indices: 18082621--18082739 Score: 152
Period size: 58 Copynumber: 2.1 Consensus size: 57
18082611 CCTCCCCCTT
18082621 TTTCCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTCTTTTC
1 TTTCCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC-AATTTTTTTCTTTTC
*** * *
18082679 TTTCCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTCTTTTT
1 TTTCCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACAATTTTTTTCTTTTC
18082736 TTTC
1 TTTC
18082740 TTTTTCATAT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
57 17 0.31
58 33 0.61
59 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (57 bp):
TTTCCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACAATTTTTTTCTTTTC
Found at i:18094491 original size:39 final size:39
Alignment explanation
Indices: 18094444--18094626 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
18094434 AATGTTCGAG
18094444 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
18094483 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
18094522 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
18094561 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
18094601 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
18094627 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:18100415 original size:19 final size:18
Alignment explanation
Indices: 18100378--18100421 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
18100368 ATACATACAG
18100378 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
18100395 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
18100414 TACTAATT
1 TAATAATT
18100422 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:18107293 original size:20 final size:20
Alignment explanation
Indices: 18107270--18107315 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
18107260 TACTCACAAA
18107270 TTATTTAAGTAAATAACATT
1 TTATTTAAGTAAATAACATT
*
18107290 TTATTAAAGTAAATAACATT
1 TTATTTAAGTAAATAACATT
*
18107310 ATATTT
1 TTATTT
18107316 CACTTAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (20 bp):
TTATTTAAGTAAATAACATT
Found at i:18108917 original size:40 final size:40
Alignment explanation
Indices: 18108872--18109038 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
18108862 CGGAATATAA
18108872 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
18108912 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
18108952 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
18108992 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
18109031 CCGGATAT
1 CCGGATAT
18109039 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:18109022 original size:80 final size:79
Alignment explanation
Indices: 18108872--18109038 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
18108862 CGGAATATAA
* *
18108872 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
18108937 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
18108952 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
18109014 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
18109031 CCGGATAT
1 CCGGATAT
18109039 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:18109886 original size:17 final size:19
Alignment explanation
Indices: 18109863--18109908 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
18109853 AAGAAGCATG
18109863 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
18109881 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
18109899 AATCATGCTC
1 AATCATGCTC
18109909 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:18116926 original size:40 final size:40
Alignment explanation
Indices: 18116881--18117047 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
18116871 CGGAATATAA
18116881 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
18116921 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
18116961 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
18117001 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
18117040 CCGGATAT
1 CCGGATAT
18117048 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:18117031 original size:80 final size:79
Alignment explanation
Indices: 18116881--18117047 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
18116871 CGGAATATAA
* *
18116881 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
18116946 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
18116961 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
18117023 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
18117040 CCGGATAT
1 CCGGATAT
18117048 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:18122890 original size:43 final size:44
Alignment explanation
Indices: 18122716--18122888 Score: 155
Period size: 43 Copynumber: 4.0 Consensus size: 44
18122706 GACATAGGAT
* * *
18122716 TCGATATGTGATAT-CATGTAAGACCACATCTGGGACGTTGGCA
1 TCGATATATGATTTACATGTAAGACCACATCTGAGACGTTGGCA
* * * *
18122759 TCGACT-TATGATTTACGTGTAAGACCACGTCTGGGATGTTGGCA
1 TCGA-TATATGATTTACATGTAAGACCACATCTGAGACGTTGGCA
*
18122803 TCG-TATCTGATTT-CATGTAAGACC-CTATCT-AGGACAG-TGGCA
1 TCGATATATGATTTACATGTAAGACCAC-ATCTGA-GAC-GTTGGCA
* * *
18122845 TTGATATTTG-TTTACATGTAAGACCACGTCTGAGACGTTGGCA
1 TCGATATATGATTTACATGTAAGACCACATCTGAGACGTTGGCA
18122888 T
1 T
18122889 TGTACGAACT
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
41 1 0.01
42 27 0.25
43 46 0.43
44 32 0.30
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (44 bp):
TCGATATATGATTTACATGTAAGACCACATCTGAGACGTTGGCA
Found at i:18128478 original size:35 final size:35
Alignment explanation
Indices: 18128438--18128510 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
18128428 GGTATGTGAT
18128438 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
*
18128473 ATATATATTATTTATGTGAGATTGATCTGACTAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
18128508 ATA
1 ATA
18128511 AAGAATGTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:18143073 original size:30 final size:30
Alignment explanation
Indices: 18143037--18143139 Score: 120
Period size: 28 Copynumber: 3.5 Consensus size: 30
18143027 GACAAGATTG
* * *
18143037 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
18143067 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* * *
18143095 GCACTAAGTGTGCGAGCTGAATATATATATA
1 GCACTAAGTGTGCGAGTTTAAAAT-TATATA
18143126 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
18143140 GATTCACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
30 20 0.32
31 20 0.32
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:18143127 original size:31 final size:28
Alignment explanation
Indices: 18143066--18143139 Score: 96
Period size: 31 Copynumber: 2.5 Consensus size: 28
18143056 AAAATTGTAC
*
18143066 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTATGATTATAT
18143094 AGCACTAAGTGTGCGAGCTGAAT-ATATATAT
1 AGCACTAAGTGTGCGAG-T--ATGAT-TATAT
18143125 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
18143140 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 17 0.41
29 1 0.02
30 2 0.05
31 21 0.51
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTATGATTATAT
Found at i:18149603 original size:27 final size:28
Alignment explanation
Indices: 18149546--18149615 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
18149536 AAATTTGTAC
**
18149546 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
18149574 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
18149601 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
18149616 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:18149624 original size:27 final size:27
Alignment explanation
Indices: 18149546--18149627 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
18149536 AAATTTGTAC
* *
18149546 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
18149574 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
18149601 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
18149628 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:18157530 original size:27 final size:28
Alignment explanation
Indices: 18157473--18157542 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
18157463 AAATTTGTAC
**
18157473 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
18157501 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
18157528 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
18157543 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:18157551 original size:27 final size:27
Alignment explanation
Indices: 18157473--18157554 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
18157463 AAATTTGTAC
* *
18157473 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
18157501 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
18157528 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
18157555 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:18160358 original size:27 final size:27
Alignment explanation
Indices: 18160328--18160419 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
18160318 ATTACCAAAG
* *
18160328 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * *
18160355 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
18160382 TACCCTC-AGTTTATAAAATTACCGTTT
1 TACCCTCGA-TTTATAAAATTACCGTTT
18160409 TACCCTCGATT
1 TACCCTCGATT
18160420 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:18160361 original size:54 final size:53
Alignment explanation
Indices: 18160303--18160429 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
18160293 TATTGAAATG
* *
18160303 CCCTCGACTTGTAAAATTACCAAAGTACCCTC-GATTTATAGAATTATCGTTTTA
1 CCCTCGA-TTGTAAAATTACCAAAGTACCCTCAG-TTTATAAAATTACCGTTTTA
* ***
18160357 CCCTCAATT-TACAAAATTACCATTTTACCCTCAGTTTATAAAATTACCGTTTTA
1 CCCTCGATTGT--AAAATTACCAAAGTACCCTCAGTTTATAAAATTACCGTTTTA
*
18160411 CCCTCGATTGTGAAATTAC
1 CCCTCGATTGTAAAATTAC
18160430 TGAAATACCC
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
52 1 0.02
53 9 0.15
54 49 0.80
55 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (53 bp):
CCCTCGATTGTAAAATTACCAAAGTACCCTCAGTTTATAAAATTACCGTTTTA
Found at i:18160494 original size:27 final size:27
Alignment explanation
Indices: 18160451--18160600 Score: 173
Period size: 27 Copynumber: 5.6 Consensus size: 27
18160441 TGTAGGATAG
18160451 AATTACC-AAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
18160477 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
18160504 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
** *
18160531 AATTACTGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
18160558 AATTACCAAACTACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
18160585 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
18160601 TTGACTTTCT
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
26 12 0.11
27 89 0.85
28 4 0.04
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:18160535 original size:54 final size:54
Alignment explanation
Indices: 18160418--18160712 Score: 199
Period size: 54 Copynumber: 5.5 Consensus size: 54
18160408 TTACCCTCGA
** * *
18160418 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACC-AAATACCCCTAGT
1 TTGTGAAATTACTGAAATACCCCTAGTTTG-TAAAATTACCAAAATACCACTAGT
* **
18160471 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGT
1 TTGTGAAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGT
* * *
18160525 TTGTGAAATTACTGAAATA-CCCTCAATTTGTAAAATTACCAAACTACCCCT-GAT
1 TTGTGAAATTACTGAAATACCCCT-AGTTTGTAAAATTACCAAAATACCACTAG-T
*** * * * * * *
18160579 TTACAAAATTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCA-TTGT
1 TTGTGAAATTACTGAAATACCCCT-AGTTTGT-AAAATTACCA-AAATACCACTAGT
*** * * * * *
18160634 TTACAAAATTACTGAAATACCCTTAGTTTGTAGATTTACCAAAACACC-CTTGT
1 TTGTGAAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGT
** * *
18160687 AGGATGAAATGACTAAAATACCCCTA
1 TTG-TGAAATTACTGAAATACCCCTA
18160713 ATAGGTAAAA
Statistics
Matches: 192, Mismatches: 39, Indels: 21
0.76 0.15 0.08
Matches are distributed among these distances:
53 50 0.26
54 94 0.49
55 34 0.18
56 14 0.07
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACTGAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGT
Found at i:18160662 original size:27 final size:27
Alignment explanation
Indices: 18160418--18160665 Score: 159
Period size: 27 Copynumber: 9.2 Consensus size: 27
18160408 TTACCCTCGA
* *
18160418 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTAAAATTACTGAAATACCCTTAGT
** * * *
18160444 AGGATAGAATTAC-CAAATACCCCTAGT
1 TTG-TAAAATTACTGAAATACCCTTAGT
** *
18160471 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACTGAAATACCCTTAGT
**
18160498 TTGTAAAATTACCAAAATACCAC-TAGT
1 TTGTAAAATTACTGAAATACC-CTTAGT
* * *
18160525 TTGTGAAATTACTGAAATACCCTCAAT
1 TTGTAAAATTACTGAAATACCCTTAGT
* *
18160552 TTGTAAAATTAC-CAAACTACCCCT-GAT
1 TTGTAAAATTACTGAAA-TACCCTTAG-T
** * *
18160579 TTACAAAATTACAGAAATACCCTTGACT
1 TTGTAAAATTACTGAAATACCCTT-AGT
* *
18160607 TTCTAAAAATTA-TAGAAATACCATT-GT
1 TTGT-AAAATTACT-GAAATACCCTTAGT
**
18160634 TTACAAAATTACTGAAATACCCTTAGT
1 TTGTAAAATTACTGAAATACCCTTAGT
18160661 TTGTA
1 TTGTA
18160666 GATTTACCAA
Statistics
Matches: 174, Mismatches: 34, Indels: 27
0.74 0.14 0.11
Matches are distributed among these distances:
26 40 0.23
27 110 0.63
28 7 0.04
29 17 0.10
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTTAGT
Found at i:18160791 original size:27 final size:28
Alignment explanation
Indices: 18160716--18160792 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 28
18160706 ACCCCTAATA
*
18160716 GGTAAAAAGACCGTAA-AGCCCTTGTAG
1 GGTAAAATGACCGTAATAGCCCTTGTAG
* *
18160743 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAATAGCCCTTGTAG
18160770 GGTAAAATGA-CG-AATATGCCCTT
1 GGTAAAATGACCGTAATA-GCCCTT
18160793 ATGTTTCGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 4 0.09
26 2 0.05
27 36 0.84
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (28 bp):
GGTAAAATGACCGTAATAGCCCTTGTAG
Found at i:18161672 original size:24 final size:24
Alignment explanation
Indices: 18161590--18161672 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
18161580 AGGCAGTGCT
* * *
18161590 AAAAGGGCTCTGCCTCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
18161614 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
18161639 AGAAAGGGCTTTGCCCCAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
18161663 AAAAGAGGCT
1 AAAAG-GGCT
18161673 AGGCCTCTAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:18161928 original size:31 final size:31
Alignment explanation
Indices: 18161879--18161961 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
18161869 CGCTTACAGT
18161879 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
18161909 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
18161940 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
18161962 TCGAGACTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:18168424 original size:16 final size:17
Alignment explanation
Indices: 18168403--18168435 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
18168393 CACATTGAAG
18168403 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
18168419 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
18168436 CTTCTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:18168529 original size:435 final size:435
Alignment explanation
Indices: 18167480--18171565 Score: 6581
Period size: 435 Copynumber: 9.4 Consensus size: 435
18167470 CAACTAATCT
* * * * *
18167480 TGTAACACCCCAAACTCGGCCTAGATGTTAGGCTTGAACCTAACGTGTTACATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
* *
18167545 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTG----TTTGAGTAAAATCCCAGTTACATT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
* * *
18167606 AGTATATTTTATAAAGTGGTACATTGAAAAATTATTTATTCTATTCCAAAAATTTCTTTTAAGTT
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
* * * *
18167671 GCAGAAGCTAATTTTAAAAGTAACTGATTTATGAAAACGTGATGTTAAAAAATAAGTTGCGAAAT
196 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
* * *
18167736 CGTTCCGAGAATGTTGC-GAAAATGTAGTGTTGTTTAAAAACAGTTATAAATTGAAGTAAATAAA
261 CGTTCTGAGAATGTTGCAG-AAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAA
* *
18167800 ACCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTTCAAAAGTTGAAAACCCAAAAC-AAA
325 ACCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAA
* * *
18167864 ACTTAAACATAAATAAAGTCCAAAGGCAGTCGTGTGACCATCTAAA
390 TCTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
* *
18167910 TGTAACACCCCAAACTCGACCTAGAAGTTAGGCCTGAATCTGACGTGTCAAATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
* *
18167975 CGAAAACCATATTTTCATTGAAAACCTTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
*
18168040 AGTTTATTTTATAAAGTGGTACATTGAAAAGCTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
* *
18168105 GCGGAAGCTAATTTTAAAAGTAACTGATTTACAAAAACGTGATGTTAAAAACTAAGTTGCGAAAT
196 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
* * * *
18168170 CGTTTTGAGAATTTTGCGGAAACGTAGTGTTGTTTAAAAATAGTTATAAATCGAAGTAAATAAAA
261 CGTTCTGAGAATGTTGCAGAAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAAA
*
18168235 CCCAAAGTTAAAATCCAGAAATTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
326 CCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
* * *
18168300 CTAAAACATAAATAAAGTCCAAAGGAACTCGTGTGACCATCTAAA
391 CTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
* * *
18168345 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCCGAATTTGACGTATCACATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
*
18168410 TGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
* * * *
18168475 AGCTTATTTTATAAGGTGGTACATTGAAAAGTTATTAATTATATTCCTAAAATTTCTTTTAAGTT
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
* *
18168540 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAATGTGATGTTAAAAACTAAGTTGCAAAAC
196 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
** * * * *
18168605 CGTTCCAAGAATGTTGCAGAAATGTATTGTTGTTTAAAAACAATTATAAATTGAAGTAAATAAAA
261 CGTTCTGAGAATGTTGCAGAAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAAA
18168670 CCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
326 CCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
* *
18168735 CTAAAACATAAATAAAGTCCAAAGGCGGTTGTGTGGCCATCTAAA
391 CTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
* * * * *
18168780 TGTAACACCCCAAACTCGGCCTAGATGTTAGGCTTGAACCTAACGTGTTACATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
* *
18168845 CAAAAACAATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
* *
18168910 AGTTTATTTTATAAAGTGGTACATTGAAAATTTATTTATTCTATTCCAAAAATTTCTTTTAAGTT
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
* *
18168975 GCGGAAGCTAATTTTAAAAGTAACTGATTTATGAAAACGTGATGTTAAAAAATAAGTTGCGAAAC
196 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
* *
18169040 CGTTCTAAGAATGTTGC-GAAAACGTAGTGTTGTCTAAAAACAGTTATAAATCGAAGTAAATAAA
261 CGTTCTGAGAATGTTGCAG-AAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAA
* *
18169104 ACCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTTCAAAAGTTGAAAACCCAAAACGAAA
325 ACCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAA
* *
18169169 TCTTAAACATAAATAAAGTCCAAAGGCAGTAGTGTGGCCATCTAAA
390 TCTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
*
18169215 TGTAACACCCCAAACTCGACCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
* * *
18169280 CAAAAACCATGTTTTCATTGAAAACCTTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGGT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
*
18169345 AGTTTATTTTATAAAGTGGTACATTGAAAAGATATTAATTCTATTCCAAAAATTTCTTTTAAGTT
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
* *
18169410 GCGGAAGCTAATTTTAAAAGTAACTGATTTACAAAAACGTGATGTTAAAAACTAAGTTGCGAAAT
196 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
* * *
18169475 CGTTTTGAGAATTTTGCAGAAACGTAGTGTTGTTTAAAAACAATTATAAATCGAAGTAAATAAAA
261 CGTTCTGAGAATGTTGCAGAAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAAA
* *
18169540 CCCAAAGTTAAAATACAGAAATTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
326 CCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
* * *
18169605 CTAAAACATAAATAAAGTCCAAAGGAACTCGTGTGACCATCTAAA
391 CTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
* * * *
18169650 TGTAACACCCCAAACTCGGCCCAGAAGTTAGGCCCGAATTTGACGTATCACATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
*
18169715 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCTAGTTACGTT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
* * *
18169780 AGCTTATTTTATAAGGTGGTACATTGAAAAGTTATTAATTCTATTCCTAAAATTTCTTTTAAGTT
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
** * *
18169845 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAATATGATGTTAAAAACTAAGTTACAAAAC
196 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
** * * *
18169910 CGTTCCAAGAATGTTGCAGAAATGTATTGTTGTTTAAAAACAGTTATAAATTGAAGTAAATAAAA
261 CGTTCTGAGAATGTTGCAGAAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAAA
18169975 CCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
326 CCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
* *
18170040 CTAAAACATAAATAAAGTCCAAAGGCGGTTGTGTGGCCATCTAAA
391 CTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
* * * * * *
18170085 TGTAACACCCCAAACTCGGCCTAGATGTTAGGCTTGAACCTAATGTGTTACATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
* *
18170150 CAAAAACAATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
* *
18170215 AGTTTATTTTATAAAGTGGTACATTGAAAATTTATTTATTCTATTCCAAAAATTTCTTTTAAGTT
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
* * *
18170280 GCGGAAGCTAATTTTAAAAGTAACTAATTTATGAAAACGTGATGTTAAAAAATAAGTTGCGAAAC
196 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
* *
18170345 CATTCTGAGAATGTTGC-GAAAACGTAGTGTTGTTTAAAAATAGTTATAAATCGAAGTAAATAAA
261 CGTTCTGAGAATGTTGCAG-AAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAA
* *
18170409 ACCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTTCAAAAGTTGAAAACCCAAAACGAAA
325 ACCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAA
* *
18170474 TCTTAAACATAAATAAAGTCCAAAGGCAGTAGTGTGGCCATCTAAA
390 TCTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
*
18170520 TGTAACA-CCCAAACTCGACCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
* * *
18170584 CAAAAACCATGTTTTCATTGAAAACCTTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGGT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
*
18170649 AGTTTATTTTATAAAGTGGTACATTGAAAAGATATTAATTCTATTCCAAAAATTTCTTTTAAGTT
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
* * *
18170714 ACGGAAGCTAATTTTAAAAGTAACTGATTTACAAAAACGTGATGTTAAAAACTAAGTTGCGAAAT
196 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
*
18170779 CGTTTTGAGAAT-TTCGCAGAAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAA
261 CGTTCTGAGAATGTT-GCAGAAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAA
*
18170843 ACCCAAAGTTAAAATCCAGAAATTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAA
325 ACCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAA
* * *
18170908 TCTAAAACATAAATAAAGTCCAAAGGAACTCGTGTGACCATCTAAA
390 TCTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
** * *
18170954 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCCAAATTTGACGTATCACATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
* **
18171019 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTGAAATCTTAGTTACGTT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
* * * *
18171084 AGCTTATTTTATAAGGTGGTACATTAAAAAGTTATTAATTCTATTCCCAAAATTTCTTTTAAGTT
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
* *
18171149 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAATGTGATGTTAAAAACTAAGTTGCAAAAC
196 GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
* ** * * *
18171214 TGTTCCAAGAATGTTGCAGAAATGTATTGTTGTTTAAAAACAGTTATAAATTGAAGTAAATAAAA
261 CGTTCTGAGAATGTTGCAGAAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAAA
18171279 CCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
326 CCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
* * *
18171344 CTAACACATAAATAAAGTCCAAAGGCAGTTGTGTGGCCATCTAAG
391 CTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
*
18171389 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCCGAATCTGACGTGTCACATTGAAGTGTTTTT
1 TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
18171454 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
66 CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
* * * *
18171519 AGTTTATTTTATAAAGTGATGCATTGAAAAGCTATTTATTCTATTCC
131 AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCC
18171566 CAAAGTAACT
Statistics
Matches: 3367, Mismatches: 276, Indels: 21
0.92 0.08 0.01
Matches are distributed among these distances:
430 93 0.03
433 2 0.00
434 660 0.20
435 2609 0.77
436 3 0.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (435 bp):
TGTAACACCCCAAACTCGGCCTAGAAGTTAGGCCTGAATCTGACGTGTCACATTGAAGTGTTTTT
CGAAAACCATGTTTTCATTGAAAACCCTTCTTATTTGAAAACTTGAGTAAAATCCCAGTTACGTT
AGTTTATTTTATAAAGTGGTACATTGAAAAGTTATTAATTCTATTCCAAAAATTTCTTTTAAGTT
GCGGAAGCTAATTTTAAAAGTAACTGATTTACGAAAACGTGATGTTAAAAACTAAGTTGCGAAAC
CGTTCTGAGAATGTTGCAGAAACGTAGTGTTGTTTAAAAACAGTTATAAATCGAAGTAAATAAAA
CCCAAAGTTAAAATCCAGAAACTTTAAGAGGCCTTATTACAAAAGTTGAAAACCCAAAACGGAAT
CTAAAACATAAATAAAGTCCAAAGGCAGTCGTGTGGCCATCTAAA
Found at i:18172476 original size:22 final size:22
Alignment explanation
Indices: 18172445--18172501 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
18172435 AATACGTTTA
*
18172445 GCACAAAGCCATAGTCAAGATG
1 GCACAGAGCCATAGTCAAGATG
** * * *
18172467 GCACAGAGCCATTTTTAGGTTG
1 GCACAGAGCCATAGTCAAGATG
18172489 GCACAGAGCCATA
1 GCACAGAGCCATA
18172502 ATCAGATTAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (22 bp):
GCACAGAGCCATAGTCAAGATG
Found at i:18172937 original size:54 final size:53
Alignment explanation
Indices: 18172879--18173034 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 53
18172869 ACCCTACAGA
* *
18172879 GGTATTTCAATAATTTTAC-ACTACAAGGGTATTTCAGTAATTTTACAAACTAGG
1 GGTATTTCAGTAATTTTACAAC--CAAGGGTATTTCAGTAATTTTACAAACTAAG
* *** * *
18172933 GGTATTTCAGTAATTTCACAAATTGAGGGTATTTC-GATAATTTCACAAATTAAG
1 GGTATTTCAGTAATTTTAC-AACCAAGGGTATTTCAG-TAATTTTACAAACTAAG
*
18172987 GGTATTTCGGTAATTTTACAACCAAGAGGTATTTCAGTAATTTTACAA
1 GGTATTTCAGTAATTTTACAACCAAG-GGTATTTCAGTAATTTTACAA
18173035 GGCGGGGGTC
Statistics
Matches: 83, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
53 5 0.06
54 76 0.92
55 1 0.01
56 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (53 bp):
GGTATTTCAGTAATTTTACAACCAAGGGTATTTCAGTAATTTTACAAACTAAG
Found at i:18173034 original size:27 final size:27
Alignment explanation
Indices: 18172876--18173034 Score: 132
Period size: 27 Copynumber: 5.9 Consensus size: 27
18172866 TTTACCCTAC
*
18172876 AGAGGTATTTCAATAATTTTAC-ACTACA
1 AGAGGTATTTCAGTAATTTTACAAC--CA
* *
18172904 AG-GGTATTTCAGTAATTTTACAAACT
1 AGAGGTATTTCAGTAATTTTACAACCA
* *
18172930 AGGGGTATTTCAGTAATTTCACAA--A
1 AGAGGTATTTCAGTAATTTTACAACCA
* * **
18172955 TTGAGGGTATTTC-GATAATTTCACAAATTA
1 -AGA-GGTATTTCAG-TAATTTTAC-AACCA
*
18172985 AG-GGTATTTCGGTAATTTTACAACCA
1 AGAGGTATTTCAGTAATTTTACAACCA
18173011 AGAGGTATTTCAGTAATTTTACAA
1 AGAGGTATTTCAGTAATTTTACAA
18173035 GGCGGGGGTC
Statistics
Matches: 109, Mismatches: 12, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
26 10 0.09
27 91 0.83
28 6 0.06
29 1 0.01
30 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.36
Consensus pattern (27 bp):
AGAGGTATTTCAGTAATTTTACAACCA
Found at i:18180054 original size:20 final size:20
Alignment explanation
Indices: 18180021--18180059 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
18180011 GTTTATTCGC
* *
18180021 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTGGTAAA
*
18180041 GATTTTTAAAATTTGGTAA
1 GATTTTCAAAATTTGGTAA
18180060 TTGGATGTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.49
Consensus pattern (20 bp):
GATTTTCAAAATTTGGTAAA
Found at i:18187170 original size:40 final size:40
Alignment explanation
Indices: 18187104--18187270 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
18187094 AAATTGAATG
* * *
18187104 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
18187143 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
18187183 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
18187223 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
18187263 ATATCCGG
1 ATATCCGG
18187271 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:18194362 original size:40 final size:40
Alignment explanation
Indices: 18194296--18194462 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
18194286 AAATTGAATG
* * *
18194296 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
18194335 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
18194375 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
18194415 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
18194455 ATATCCGG
1 ATATCCGG
18194463 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:18198751 original size:29 final size:29
Alignment explanation
Indices: 18198719--18198791 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
18198709 CTTCGAGGTC
*
18198719 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
18198748 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
18198777 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
18198792 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:18206669 original size:29 final size:29
Alignment explanation
Indices: 18206637--18206700 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
18206627 CTTCGAGCTC
*
18206637 GCACACCCAATGCCGTATATTTCCAGCAT
1 GCACACCCAATGCCATATATTTCCAGCAT
** *
18206666 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAATGCCATATATTTCCAGCAT
18206695 GCACAC
1 GCACAC
18206701 TTAGTGCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (29 bp):
GCACACCCAATGCCATATATTTCCAGCAT
Found at i:18206701 original size:29 final size:29
Alignment explanation
Indices: 18206647--18206709 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
18206637 GCACACCCAA
*
18206647 TGCCGTATATTTCCAGCATGCACACTTAG
1 TGCCATATATTTCCAGCATGCACACTTAG
18206676 TGCCATATATTTCCAGCATGCACACTTAG
1 TGCCATATATTTCCAGCATGCACACTTAG
18206705 TGCCA
1 TGCCA
18206710 ATCTCGTCAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
TGCCATATATTTCCAGCATGCACACTTAG
Found at i:18208665 original size:20 final size:20
Alignment explanation
Indices: 18208632--18208670 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
18208622 GTTTATTCGC
* *
18208632 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTGGTAAA
*
18208652 GATTTTTAAAATTTGGTAA
1 GATTTTCAAAATTTGGTAA
18208671 TTGGATGTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.49
Consensus pattern (20 bp):
GATTTTCAAAATTTGGTAAA
Found at i:18211532 original size:24 final size:24
Alignment explanation
Indices: 18211500--18211550 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
18211490 CCAAACATGT
18211500 TTGAAGATGGCACCTTATGAGGCC
1 TTGAAGATGGCACCTTATGAGGCC
*
18211524 TTGAAGATGGCGCCTTATGAGGCC
1 TTGAAGATGGCACCTTATGAGGCC
18211548 TTG
1 TTG
18211551 TATGGTAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (24 bp):
TTGAAGATGGCACCTTATGAGGCC
Found at i:18213600 original size:37 final size:37
Alignment explanation
Indices: 18213547--18213647 Score: 175
Period size: 37 Copynumber: 2.7 Consensus size: 37
18213537 CGAATAGTCC
*
18213547 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
18213584 CCACACGTAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
18213621 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
18213648 AAATATATTT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:18213848 original size:48 final size:48
Alignment explanation
Indices: 18213790--18213941 Score: 241
Period size: 48 Copynumber: 3.2 Consensus size: 48
18213780 ATATACACAC
* * *
18213790 ATCTCCTACATATTTCACATTAGCCATCCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
18213838 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
18213886 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
18213934 ATCTCATA
1 ATCTCATA
18213942 TATACCACAT
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:18213952 original size:24 final size:24
Alignment explanation
Indices: 18213920--18213965 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
18213910 CATTCGGCTT
18213920 TACCACATATACATATCTCATATA
1 TACCACATATACATATCTCATATA
*
18213944 TACCACATATATATATCTCATA
1 TACCACATATACATATCTCATA
18213966 CATATTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (24 bp):
TACCACATATACATATCTCATATA
Found at i:18213968 original size:72 final size:72
Alignment explanation
Indices: 18213872--18214013 Score: 266
Period size: 72 Copynumber: 2.0 Consensus size: 72
18213862 CATTCGGATT
*
18213872 TACCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATC
1 TACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATC
18213937 TCATATA
66 TCATATA
*
18213944 TACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCATATATACATATC
1 TACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATC
18214009 TCATA
66 TCATA
18214014 CATATTTCAC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (72 bp):
TACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATC
TCATATA
Found at i:18214002 original size:48 final size:48
Alignment explanation
Indices: 18213944--18214057 Score: 185
Period size: 48 Copynumber: 2.4 Consensus size: 48
18213934 ATCTCATATA
18213944 TACCACATATATATATCTCATACATATTTCA-TATTAGCCATTCGGCTT
1 TACCACATATATATATCTCATACATATTTCACT-TTAGCCATTCGGCTT
* * *
18213992 TACCATATATACATATCTCATACATATTTCACTTTAGTCATTCGGCTT
1 TACCACATATATATATCTCATACATATTTCACTTTAGCCATTCGGCTT
18214040 TACCACATATATATATCT
1 TACCACATATATATATCT
18214058 ATTTATCTTG
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 59 0.98
49 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (48 bp):
TACCACATATATATATCTCATACATATTTCACTTTAGCCATTCGGCTT
Found at i:18214037 original size:120 final size:120
Alignment explanation
Indices: 18213824--18214057 Score: 380
Period size: 120 Copynumber: 1.9 Consensus size: 120
18213814 CATCCGGCTT
*
18213824 TACCAAATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATATATC
1 TACCAAATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATACATATC
18213889 TCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTCATATA
66 TCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTCATATA
* * * * *
18213944 TACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCATATATACATATC
1 TACCAAATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATACATATC
* *
18214009 TCATACATATTTCACT-TTAGTCATTCGGCTTTACCACATATATATATCT
66 TCATACATATTTCA-TGTTAGCCATTCGGCTTTACCACATATACATATCT
18214058 ATTTATCTTG
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
120 104 0.99
121 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.06, T:0.38
Consensus pattern (120 bp):
TACCAAATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATACATATC
TCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTCATATA
Found at i:18216479 original size:20 final size:20
Alignment explanation
Indices: 18216442--18216490 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
18216432 ACAATCAAAT
*
18216442 CCCAACTAAATAATTTAGCA
1 CCCAACTAAATAAATTAGCA
* *
18216462 CCCAATTAACTAAATTAGACCA
1 CCCAACTAAATAAATTAG--CA
18216484 CCCAACT
1 CCCAACT
18216491 TTCACAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 15 0.65
22 8 0.35
ACGTcount: A:0.43, C:0.31, G:0.04, T:0.22
Consensus pattern (20 bp):
CCCAACTAAATAAATTAGCA
Found at i:18217452 original size:57 final size:57
Alignment explanation
Indices: 18217370--18217501 Score: 160
Period size: 57 Copynumber: 2.3 Consensus size: 57
18217360 GAAACACACT
* * * *
18217370 TCGCATACACAATGCC-C-ACTGACTGATTTTGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACACAGTGCCTCAACT-ACTGATCTGGCACACATAGCGCTCGATTAAAGAAC
* * * *
18217426 TCGCACACATAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACACAGTGCCTCAACTACTGATCTGGCACACATAGCGCTCGATTAAAGAAC
*
18217483 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
18217502 TAACTCCAGC
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
56 13 0.20
57 48 0.75
58 3 0.05
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCAACTACTGATCTGGCACACATAGCGCTCGATTAAAGAAC
Found at i:18217573 original size:40 final size:40
Alignment explanation
Indices: 18217539--18217719 Score: 299
Period size: 40 Copynumber: 4.5 Consensus size: 40
18217529 TTAGCTTGGT
* *
18217539 TATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGG
1 TATATCACTAGCACGAATGCTCTTCGAAACTTAGCCCGGA
*
18217579 TATATCACTAGCACGAATGCTCTTCGAAACTTAGCCCAGA
1 TATATCACTAGCACGAATGCTCTTCGAAACTTAGCCCGGA
* *
18217619 TATATCACTAGCATGAATGCTCTTCAAAACTTAGCCCGGA
1 TATATCACTAGCACGAATGCTCTTCGAAACTTAGCCCGGA
*
18217659 TATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGA
1 TATATCACTAGCACGAATGCTCTTCGAAACTTAGCCCGGA
*
18217699 TACATCACTAGCACGAATGCT
1 TATATCACTAGCACGAATGCT
18217720 GTGACACCCC
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 131 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (40 bp):
TATATCACTAGCACGAATGCTCTTCGAAACTTAGCCCGGA
Found at i:18220536 original size:47 final size:47
Alignment explanation
Indices: 18220477--18220776 Score: 474
Period size: 47 Copynumber: 6.4 Consensus size: 47
18220467 GATGTACAAG
* * *
18220477 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
18220524 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
18220571 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
18220618 GTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
18220665 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
18220712 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
18220759 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
18220777 TCCCGAAGGG
Statistics
Matches: 232, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 232 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:18221979 original size:40 final size:40
Alignment explanation
Indices: 18221935--18222041 Score: 196
Period size: 40 Copynumber: 2.7 Consensus size: 40
18221925 GGGTGTTACA
18221935 AATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
1 AATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
*
18221975 AATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCACG
1 AATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
*
18222015 AATGCTCTTCGGGACTTAGCCCGGATA
1 AATGCTCTTCGGAACTTAGCCCGGATA
18222042 TATATATAAC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
Found at i:18223382 original size:37 final size:37
Alignment explanation
Indices: 18223329--18223505 Score: 327
Period size: 37 Copynumber: 4.8 Consensus size: 37
18223319 CGAATAGTCC
* *
18223329 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
18223366 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
18223403 CCACACGTAGTCATCGGGTCTTACCCGGGCATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
18223440 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
18223477 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
18223506 ATATATTTCC
Statistics
Matches: 136, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 136 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:18223704 original size:48 final size:48
Alignment explanation
Indices: 18223646--18223797 Score: 225
Period size: 48 Copynumber: 3.2 Consensus size: 48
18223636 ATATACACAC
* *
18223646 ATCTCCTACATATTTCACATTAGCCA-TCTGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTC-GGCTTTACCACATATACAT
* *
18223694 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
18223742 ATCTCATACATATTTCATGTTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
18223790 ATCTCATA
1 ATCTCATA
18223798 TATACCACAT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
48 92 0.98
49 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:18223808 original size:24 final size:24
Alignment explanation
Indices: 18223776--18223821 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
18223766 CATTCAGCTT
18223776 TACCACATATACATATCTCATATA
1 TACCACATATACATATCTCATATA
*
18223800 TACCACATATATATATCTCATA
1 TACCACATATACATATCTCATA
18223822 CATATTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (24 bp):
TACCACATATACATATCTCATATA
Found at i:18223824 original size:72 final size:72
Alignment explanation
Indices: 18223728--18223867 Score: 253
Period size: 72 Copynumber: 1.9 Consensus size: 72
18223718 CATTCGGATT
*
18223728 TACCACATATATATATCTCATACATATTTCATGTTAGCCATTCAGCTTTACCACATATACATATC
1 TACCACATATATATATCTCATACATATTTCATATTAGCCATTCAGCTTTACCACATATACATATC
18223793 TCATATA
66 TCATATA
* *
18223800 TACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCATATATACATATC
1 TACCACATATATATATCTCATACATATTTCATATTAGCCATTCAGCTTTACCACATATACATATC
18223865 TCA
66 TCA
18223868 AACATATTTC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (72 bp):
TACCACATATATATATCTCATACATATTTCATATTAGCCATTCAGCTTTACCACATATACATATC
TCATATA
Found at i:18223858 original size:48 final size:48
Alignment explanation
Indices: 18223800--18223913 Score: 183
Period size: 48 Copynumber: 2.4 Consensus size: 48
18223790 ATCTCATATA
* *
18223800 TACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTT
1 TACCACATATATATATCTCAAACATATTTCACATTAGCCATTCGGCTT
* * *
18223848 TACCATATATACATATCTCAAACATATTTCACATTAGTCATTCGGCTT
1 TACCACATATATATATCTCAAACATATTTCACATTAGCCATTCGGCTT
18223896 TACCACATATATATATCT
1 TACCACATATATATATCT
18223914 ATTTATCTTG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (48 bp):
TACCACATATATATATCTCAAACATATTTCACATTAGCCATTCGGCTT
Found at i:18223896 original size:120 final size:120
Alignment explanation
Indices: 18223680--18223913 Score: 360
Period size: 120 Copynumber: 1.9 Consensus size: 120
18223670 CATCTGGCTT
*
18223680 TACCAAATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATATATC
1 TACCAAATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATACATATC
* **
18223745 TCATACATATTTCATGTTAGCCATTCAGCTTTACCACATATACATATCTCATATA
66 TCAAACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATA
* * * * *
18223800 TACCACATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCATATATACATATC
1 TACCAAATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATACATATC
* * *
18223865 TCAAACATATTTCACATTAGTCATTCGGCTTTACCACATATATATATCT
66 TCAAACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCT
18223914 ATTTATCTTG
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 102 1.00
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (120 bp):
TACCAAATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATACATATC
TCAAACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATA
Found at i:18226020 original size:30 final size:31
Alignment explanation
Indices: 18225964--18226026 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
18225954 CCTTTTCATA
*
18225964 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
18225995 TTTCAAATTTCATATTACT-GGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
18226025 TT
1 TT
18226027 ACTGTAACGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:18226294 original size:23 final size:23
Alignment explanation
Indices: 18226240--18226405 Score: 269
Period size: 23 Copynumber: 7.1 Consensus size: 23
18226230 CCTAGCCTCT
* *
18226240 TTTAATAACTGGGGTAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
18226263 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
18226287 TTTAATAACTGGGGCATAAGCCT
1 TTTAATAACTGGGGCATAAGCCC
*
18226310 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
18226333 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
18226357 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
18226380 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
18226403 TTT
1 TTT
18226406 TGCACTTCCT
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
23 91 0.67
24 44 0.33
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:18226294 original size:47 final size:47
Alignment explanation
Indices: 18226240--18226406 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
18226230 CCTAGCCTCT
* *
18226240 TTTAATAACTGGGGTAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
18226287 TTTAATAACTGGGGCATAAG-CCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
18226333 TTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
18226380 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
18226407 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
46 47 0.42
47 62 0.56
48 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:18226321 original size:70 final size:70
Alignment explanation
Indices: 18226238--18226406 Score: 293
Period size: 70 Copynumber: 2.4 Consensus size: 70
18226228 GGCCTAGCCT
* *
18226238 CTTTTAATAACTGGGGTAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
18226303 TAAGC
66 TAAGC
* *
18226308 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
1 CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
18226373 TAAGC
66 TAAGC
*
18226378 CCTTTAATAACTGGGGCATAAGCCCTTTT
1 CTTTTAATAACTGGGGCATAAGCCCTTTT
18226407 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 93 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (70 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
TAAGC
Found at i:18226491 original size:20 final size:20
Alignment explanation
Indices: 18226452--18226517 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
18226442 GCATTTATGA
*
18226452 ACATCTCATGTGCA-ATCAT
1 ACATATCATGTGCATATCAT
18226471 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
18226491 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
18226511 ACGTATC
1 ACATATC
18226518 CTGTTTATCA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
19 13 0.31
20 29 0.69
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:18226584 original size:24 final size:24
Alignment explanation
Indices: 18226557--18226603 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
18226547 ATATATAAAC
* *
18226557 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAATGGTCATTTTA
18226581 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
18226604 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:18227857 original size:27 final size:27
Alignment explanation
Indices: 18227837--18228227 Score: 445
Period size: 27 Copynumber: 14.6 Consensus size: 27
18227827 AGGGTATTTT
*
18227837 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
18227864 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
18227891 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
18227918 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
18227945 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
18227972 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
18227998 GGTAATTATGTAAAT-TAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
18228024 GGTAATTCTAT-AATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
18228050 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
18228077 GGTAATT-TGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
18228103 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
18228130 GGTAATTCTATAAATAGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
18228157 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
18228184 AGTAATTCTATAAA-CTGAGGGTAAAAT
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
18228211 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
18228228 GGAGTACTTT
Statistics
Matches: 320, Mismatches: 34, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
25 3 0.01
26 83 0.26
27 233 0.73
28 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:18228250 original size:81 final size:81
Alignment explanation
Indices: 18227838--18228227 Score: 513
Period size: 81 Copynumber: 4.9 Consensus size: 81
18227828 GGGTATTTTA
* * * * *
18227838 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
18227903 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * *
18227919 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
18227984 AATCG-GGGTAAAATG
66 AATCGAGGGTAAAATG
* * **
18227999 GTAATTATGTAAAT-TAGGGTAAAACGGTAATTCTAT-AATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
*
18228062 AA-CTGAGGGTAAAACG
66 AATC-GAGGGTAAAATG
* * *
18228078 GTAA-TTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
* *
18228142 AATAGAGGGTAAAACG
66 AATCGAGGGTAAAATG
** * *
18228158 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAA-CTGAGGGTAAAATGGTAATTCTGT
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGT
18228222 AAATCG
65 AAATCG
18228228 GGAGTACTTT
Statistics
Matches: 271, Mismatches: 31, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
77 1 0.00
78 34 0.13
79 52 0.19
80 66 0.24
81 118 0.44
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAATG
Found at i:18231097 original size:31 final size:31
Alignment explanation
Indices: 18231056--18231119 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
18231046 CCTTTTCATA
*
18231056 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
18231087 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
18231118 TT
1 TT
18231120 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:18231388 original size:23 final size:24
Alignment explanation
Indices: 18231313--18231567 Score: 361
Period size: 24 Copynumber: 11.0 Consensus size: 24
18231303 ACTTTATCAT
*
18231313 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
18231338 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
18231362 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
18231385 ATAACT----C-T-AGCCTCTTTTA
1 ATAACTGGGGCATAAGCC-CTTTTA
*
18231404 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
18231428 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
18231451 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
18231475 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
18231499 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
18231522 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
18231545 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
18231568 GCACTTCCTC
Statistics
Matches: 212, Mismatches: 7, Indels: 23
0.88 0.03 0.10
Matches are distributed among these distances:
17 4 0.02
18 2 0.01
19 11 0.05
23 79 0.37
24 100 0.47
25 16 0.08
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:18231388 original size:47 final size:47
Alignment explanation
Indices: 18231334--18231566 Score: 347
Period size: 47 Copynumber: 5.1 Consensus size: 47
18231324 CCTAGCCTCT
*
18231334 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
18231381 TTTAATAACT----C-T-AGCCTCTTTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC
18231423 TTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
18231470 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
18231518 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
18231564 TTT
1 TTT
18231567 TGCACTTCCT
Statistics
Matches: 170, Mismatches: 7, Indels: 19
0.87 0.04 0.10
Matches are distributed among these distances:
41 4 0.02
42 24 0.14
43 11 0.06
46 25 0.15
47 78 0.46
48 24 0.14
49 4 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:18231652 original size:20 final size:20
Alignment explanation
Indices: 18231613--18231682 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
18231603 GCATTTATGA
*
18231613 ACATCTCATGTGCA-ATCAT
1 ACATATCATGTGCATATCAT
18231632 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
18231652 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
18231672 ACATATCATGT
1 ACATATCATGT
18231683 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
19 13 0.28
20 34 0.72
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Done.