Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 71 of 425
Found at i:19924036 original size:17 final size:17
Alignment explanation
Indices: 19924010--19924044 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
19924000 TCGCAGTCTC
*
19924010 TATCAATTTTGCTACAG
1 TATCAATTTTACTACAG
*
19924027 TATCAGTTTTACTACAG
1 TATCAATTTTACTACAG
19924044 T
1 T
19924045 TTTAGTATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (17 bp):
TATCAATTTTACTACAG
Found at i:19928393 original size:20 final size:20
Alignment explanation
Indices: 19928368--19928408 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
19928358 AGGATCATGC
19928368 TCCCTTAACTTATGGTAAGT
1 TCCCTTAACTTATGGTAAGT
19928388 TCCCTTAACTTATGGTAAGT
1 TCCCTTAACTTATGGTAAGT
19928408 T
1 T
19928409 TGACCCATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (20 bp):
TCCCTTAACTTATGGTAAGT
Found at i:19937988 original size:50 final size:49
Alignment explanation
Indices: 19937855--19938054 Score: 208
Period size: 50 Copynumber: 4.0 Consensus size: 49
19937845 AATGATCTAT
* * *
19937855 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAGCCGAAAA
1 TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGA
* **
19937907 CTGTGA--TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA
1 -TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
*
19937955 TGGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
1 T-GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
* * * * * *
19938005 CTGT-TGGTCGCATGTGTAGCACTAAATGCAGGCTACTATGCGTACCAGA
1 -TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
19938054 T
1 T
19938055 AGCTTCGGCT
Statistics
Matches: 128, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
47 1 0.01
48 7 0.05
49 38 0.30
50 42 0.33
51 35 0.27
53 5 0.04
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (49 bp):
TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
Found at i:19948192 original size:7 final size:7
Alignment explanation
Indices: 19948180--19948205 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
19948170 TTTAGTTCAT
19948180 TTGGACA
1 TTGGACA
19948187 TTGGACA
1 TTGGACA
19948194 TTGGACA
1 TTGGACA
19948201 TTGGA
1 TTGGA
19948206 TTTCCTAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.31
Consensus pattern (7 bp):
TTGGACA
Found at i:19962679 original size:40 final size:40
Alignment explanation
Indices: 19962586--19962767 Score: 181
Period size: 39 Copynumber: 4.6 Consensus size: 40
19962576 AAATTGAATG
* * * * *
19962586 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
19962625 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
19962665 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
19962704 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
19962744 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
19962768 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 64 0.53
40 56 0.47
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:19964442 original size:27 final size:27
Alignment explanation
Indices: 19964423--19964568 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
19964413 ATTACCAAAG
**
19964423 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
19964450 TACCCTCGATTTATAGAATTTCCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
19964477 TACGCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
19964504 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
19964531 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
19964558 TACCCTCGATT
1 TACCCTCGATT
19964569 GTGAAATTAC
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:19964457 original size:54 final size:54
Alignment explanation
Indices: 19964398--19964568 Score: 207
Period size: 54 Copynumber: 3.2 Consensus size: 54
19964388 TATTGAAATG
* * *** *
19964398 CCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTA
* * * * *
19964452 CCCTCGATTTATAGAATTTCCGTTTTACGCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTA
* * * *
19964506 CCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTA
19964560 CCCTCGATT
1 CCCTCGATT
19964569 GTGAAATTAC
Statistics
Matches: 99, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 99 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTA
Found at i:19964655 original size:26 final size:26
Alignment explanation
Indices: 19964600--19964691 Score: 139
Period size: 27 Copynumber: 3.5 Consensus size: 26
19964590 TGTAGGATAG
19964600 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
* *
19964627 AATTACCAAAATACACTAGTTTGTGA
1 AATTACCAAAATACCCTAGTTTGTAA
*
19964653 AATTACCAAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AGTTTGTAA
19964680 AATTACCAAAAT
1 AATTACCAAAAT
19964692 CCCCCTAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 27 0.46
27 32 0.54
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:19964701 original size:27 final size:26
Alignment explanation
Indices: 19964600--19964711 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
19964590 TGTAGGATAG
*
19964600 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAATTTGTAA
* * *
19964627 AATTACCAAAATACACTAGTTTGTGA
1 AATTACCAAAATACCCTAATTTGTAA
19964653 AATTACCAAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AATTTGTAA
* **
19964680 AATTACCAAAATCCCCCTAATTTACAA
1 AATTACCAAAAT-ACCCTAATTTGTAA
19964707 AATTA
1 AATTA
19964712 TAGAAATACC
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 27 0.36
27 44 0.59
28 4 0.05
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTAATTTGTAA
Found at i:19964773 original size:27 final size:27
Alignment explanation
Indices: 19964700--19964785 Score: 104
Period size: 27 Copynumber: 3.1 Consensus size: 27
19964690 ATCCCCCTAA
*
19964700 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-G
*
19964728 TTT-CTAAAAATTATAGAAATACCTTTGG
1 TTTAC--AAAATTATAGAAATACCCTTGG
19964756 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCCTTGG
19964783 TTT
1 TTT
19964786 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 23 0.45
28 7 0.14
29 21 0.41
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGG
Found at i:19965998 original size:31 final size:30
Alignment explanation
Indices: 19965948--19966030 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
19965938 CACTTATAGT
*
19965948 AAAGGCTTCGGACAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
19965978 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGG-CCAGTGATATGATTTATGA
19966009 AAAGGCTTCGGTCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
19966031 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 16 0.32
31 34 0.68
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:19974564 original size:39 final size:39
Alignment explanation
Indices: 19974521--19974701 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
19974511 TATATAATTA
*
19974521 TACCCCTGATCATACTTACGTGACCTTATTGTACTTCGG
1 TACCCCTGATCATACTTACGTGCCCTTATTGTACTTCGG
* * *
19974560 TACCCCTAATCGTACTTACGTGCCCTTGTTGTACTTCGG
1 TACCCCTGATCATACTTACGTGCCCTTATTGTACTTCGG
*
19974599 TACCCCTGATCTTACTTACGTGCCCTTATTGTACTTCGG
1 TACCCCTGATCATACTTACGTGCCCTTATTGTACTTCGG
* ** * * * *
19974638 TACTCCTGATCGCACTTAGGTGCCCCTATTCTACTTCGA
1 TACCCCTGATCATACTTACGTGCCCTTATTGTACTTCGG
*
19974677 TACCCCTGAAT-ACACTTACGTGCCC
1 TACCCCTG-ATCATACTTACGTGCCC
19974702 CTGTTATATT
Statistics
Matches: 124, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 122 0.98
40 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.15, T:0.34
Consensus pattern (39 bp):
TACCCCTGATCATACTTACGTGCCCTTATTGTACTTCGG
Found at i:19974576 original size:20 final size:20
Alignment explanation
Indices: 19974551--19974683 Score: 69
Period size: 20 Copynumber: 6.8 Consensus size: 20
19974541 TGACCTTATT
19974551 GTACTTCGGTACCCCTAATC
1 GTACTTCGGTACCCCTAATC
* ** *
19974571 GTACTTAC-GT-GCCCTTGTT
1 GTACTT-CGGTACCCCTAATC
*
19974590 GTACTTCGGTACCCCTGATC
1 GTACTTCGGTACCCCTAATC
* * * *
19974610 TTACTTAC-GT-GCCCTTATT
1 GTACTT-CGGTACCCCTAATC
* *
19974629 GTACTTCGGTACTCCTGATC
1 GTACTTCGGTACCCCTAATC
* * * *
19974649 GCACTTAGGTGCCCCTATTC
1 GTACTTCGGTACCCCTAATC
*
19974669 -TACTTCGATACCCCT
1 GTACTTCGGTACCCCT
19974684 GAATACACTT
Statistics
Matches: 80, Mismatches: 27, Indels: 13
0.67 0.22 0.11
Matches are distributed among these distances:
18 2 0.03
19 37 0.46
20 39 0.49
21 2 0.03
ACGTcount: A:0.16, C:0.32, G:0.17, T:0.35
Consensus pattern (20 bp):
GTACTTCGGTACCCCTAATC
Found at i:19974593 original size:19 final size:19
Alignment explanation
Indices: 19974571--19974634 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
19974561 ACCCCTAATC
19974571 GTACTTACGTGCCCTTGTT
1 GTACTTACGTGCCCTTGTT
* *
19974590 GTACTT-CGGTACCCCTGATCT
1 GTACTTAC-GTGCCCTTG-T-T
*
19974611 -TACTTACGTGCCCTTATT
1 GTACTTACGTGCCCTTGTT
19974629 GTACTT
1 GTACTT
19974635 CGGTACTCCT
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
18 2 0.06
19 19 0.54
20 12 0.34
21 2 0.06
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.41
Consensus pattern (19 bp):
GTACTTACGTGCCCTTGTT
Found at i:19974720 original size:78 final size:77
Alignment explanation
Indices: 19974520--19974725 Score: 198
Period size: 78 Copynumber: 2.6 Consensus size: 77
19974510 TTATATAATT
* * * ** * * *
19974520 ATACCCCTGATCATACTTACGTGACCTTATTGTACTTCGGTACCCCTAATCGTACTTACGTGCCC
1 ATACCCCTGATC-TACTTACGTGCCCCTATTATACTTCAATACTCCTGATCGCACTTACGTGCCC
* * *
19974585 TTGTTGTACTTCG
65 CTATTCTACTTCG
* * * ** *
19974598 GTACCCCTGATCTTACTTACGTGCCCTTATTGTACTTCGGTACTCCTGATCGCACTTAGGTGCCC
1 ATACCCCTGATC-TACTTACGTGCCCCTATTATACTTCAATACTCCTGATCGCACTTACGTGCCC
19974663 CTATTCTACTTCG
65 CTATTCTACTTCG
* *
19974676 ATACCCCTGAATAC-ACTTACGTGCCCCTGTTATATTTCAATACTCCTGAT
1 ATACCCCTG-AT-CTACTTACGTGCCCCTATTATACTTCAATACTCCTGAT
19974726 AACACTTTTG
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
78 106 0.97
79 2 0.02
80 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.15, T:0.35
Consensus pattern (77 bp):
ATACCCCTGATCTACTTACGTGCCCCTATTATACTTCAATACTCCTGATCGCACTTACGTGCCCC
TATTCTACTTCG
Found at i:19974724 original size:39 final size:39
Alignment explanation
Indices: 19974520--19974732 Score: 122
Period size: 39 Copynumber: 5.5 Consensus size: 39
19974510 TTATATAATT
* * * * * *
19974520 ATACCCCTGATCATACTTACGTGACCTTATTGTACTTCG
1 ATACCCCTGATAACACTTACGTGCCCCTATTATACTTCA
* * *** * * * *
19974559 GTACCCCTAATCGTACTTACGTGCCCTTGTTGTACTTCG
1 ATACCCCTGATAACACTTACGTGCCCCTATTATACTTCA
* *** * * *
19974598 GTACCCCTGATCTTACTTACGTGCCCTTATTGTACTTCG
1 ATACCCCTGATAACACTTACGTGCCCCTATTATACTTCA
* * ** * * *
19974637 GTACTCCTGATCGCACTTAGGTGCCCCTATTCTACTTCG
1 ATACCCCTGATAACACTTACGTGCCCCTATTATACTTCA
* *
19974676 ATACCCCTGA-ATACACTTACGTGCCCCTGTTATATTTCA
1 ATACCCCTGATA-ACACTTACGTGCCCCTATTATACTTCA
*
19974715 ATACTCCTGATAACACTT
1 ATACCCCTGATAACACTT
19974733 TTGTCTCGTG
Statistics
Matches: 148, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 147 0.99
40 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.14, T:0.35
Consensus pattern (39 bp):
ATACCCCTGATAACACTTACGTGCCCCTATTATACTTCA
Found at i:19984364 original size:32 final size:32
Alignment explanation
Indices: 19984328--19984390 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
19984318 CAACTAACCA
* *
19984328 ATGAGTTA-TCAAATTAAATTAATTAATTTATC
1 ATGAGTTACTC-AATTAAAGTAATCAATTTATC
*
19984360 ATGAGTTACTCAATTCAAGTAATCAATTTAT
1 ATGAGTTACTCAATTAAAGTAATCAATTTAT
19984391 AAGTTTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 25 0.93
33 2 0.07
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (32 bp):
ATGAGTTACTCAATTAAAGTAATCAATTTATC
Found at i:19984572 original size:17 final size:17
Alignment explanation
Indices: 19984540--19984572 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
19984530 CACATGAAAT
19984540 ATAATCATTTTATTAAA
1 ATAATCATTTTATTAAA
19984557 ATAAT-ATTTTAGTTAA
1 ATAATCATTTTA-TTAA
19984573 GATCATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (17 bp):
ATAATCATTTTATTAAA
Found at i:19984781 original size:22 final size:21
Alignment explanation
Indices: 19984731--19984782 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 21
19984721 GTGAAAATAT
19984731 TTTTATTTTTATAAATTAAAC
1 TTTTATTTTTATAAATTAAAC
* * *
19984752 -TATAATTTTATCATATATAAAC
1 TTTTATTTTTAT-AAAT-TAAAC
19984774 TTTTATTTT
1 TTTTATTTT
19984783 CACCATTTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
20 9 0.39
21 3 0.13
22 5 0.22
23 6 0.26
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTATTTTTATAAATTAAAC
Found at i:19994969 original size:21 final size:21
Alignment explanation
Indices: 19994945--19994989 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
19994935 CTTTTCTTCT
19994945 AAATTTCTCAAAAAATCTCTC
1 AAATTTCTCAAAAAATCTCTC
***
19994966 AAATTTCTCCCTAAATCTCTC
1 AAATTTCTCAAAAAATCTCTC
19994987 AAA
1 AAA
19994990 GCTCTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (21 bp):
AAATTTCTCAAAAAATCTCTC
Found at i:19996773 original size:18 final size:18
Alignment explanation
Indices: 19996750--19996792 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
19996740 TGCCAAGTGC
* *
19996750 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
19996768 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
19996786 GTTTCCT
1 GTATCCT
19996793 TTTCCCAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:19998833 original size:21 final size:21
Alignment explanation
Indices: 19998807--19998864 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
19998797 TGCAGGGCTC
*
19998807 ACACGCCCGTATGGCCAAAGG
1 ACACGCCCGTATGACCAAAGG
* *
19998828 ACACGCCCTTGTGACCAAAGG
1 ACACGCCCGTATGACCAAAGG
* *
19998849 ACACACCCGTGTGACC
1 ACACGCCCGTATGACC
19998865 CTATGACATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.36, G:0.24, T:0.12
Consensus pattern (21 bp):
ACACGCCCGTATGACCAAAGG
Found at i:20000572 original size:48 final size:47
Alignment explanation
Indices: 20000501--20000737 Score: 280
Period size: 48 Copynumber: 4.9 Consensus size: 47
20000491 ACTTGAAAGT
* * * *
20000501 CTCGCACCCTAGGTGCGAATATCATGGCCAGAGGCCAAATCAATG-AA
1 CTCGCACCCGAAGTGCTAATATCATGGCC-GAAGCCAAATCAATGTAA
*
20000548 GCTCGCACCCGAAGTGCTAATATCATGGCTCGAAGCTAAATCAATGTAA
1 -CTCGCACCCGAAGTGCTAATATCATGGC-CGAAGCCAAATCAATGTAA
* * *
20000597 CTTGTACCCGAAGTGCTAATATCATGGCTCGAAGGCAAATCAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGC-CGAAGCCAAATCAATGTAA
*
20000645 CTCGCACCTGAAGTGCTAATAGT-ATGGCCTGAAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCTAATA-TCATGGCC-GAAGCCAAATCAATGTAA
* * * *
20000693 CTCACACCCAAAGTGCTAATATCATGCCCCGAAGCCAATTCAATG
1 CTCGCACCCGAAGTGCTAATATCATG-GCCGAAGCCAAATCAATG
20000738 AAGATCCTAA
Statistics
Matches: 165, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
47 2 0.01
48 157 0.95
49 6 0.04
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.22
Consensus pattern (47 bp):
CTCGCACCCGAAGTGCTAATATCATGGCCGAAGCCAAATCAATGTAA
Found at i:20008949 original size:26 final size:26
Alignment explanation
Indices: 20008920--20009027 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
20008910 TGGTACAAAT
20008920 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
20008946 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
20008972 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
20008998 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
20009024 TGAT
1 TGAT
20009028 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:20010690 original size:27 final size:26
Alignment explanation
Indices: 20010652--20010789 Score: 159
Period size: 27 Copynumber: 5.1 Consensus size: 26
20010642 AAGCGTCCTA
*
20010652 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
*
20010679 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTG
* * *
20010706 GTGGCTATGCCACGATTATCTGATATA
1 GTGGCTCTGCCAC-ATTATCTGATCTG
*
20010733 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTG
* *
20010760 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACATTATCT-GATCTG
20010787 GTG
1 GTG
20010790 ACTTCGTCAC
Statistics
Matches: 94, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 9 0.10
27 83 0.88
28 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTG
Found at i:20010737 original size:54 final size:54
Alignment explanation
Indices: 20010652--20010783 Score: 214
Period size: 54 Copynumber: 2.5 Consensus size: 54
20010642 AAGCGTCCTA
* *
20010652 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATATAGTGGCTCTGCCACATATATCTGTTCTG
*
20010706 GTGGCTATGCCACGATTATCTGATATAGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATATAGTGGCTCTGCCACATATATCTGTTCTG
*
20010760 GTGGCTCTGCCACAA-TATCT-ATAT
1 GTGGCTATGCCACAATTATCTGATAT
20010784 CTGGTGACTT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
52 4 0.05
53 5 0.07
54 64 0.88
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATATAGTGGCTCTGCCACATATATCTGTTCTG
Found at i:20012721 original size:28 final size:28
Alignment explanation
Indices: 20012690--20012745 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
20012680 TTTCTAATTA
* * *
20012690 AATTTAATTTTAATCCTTTTTATATTTT
1 AATTTAATTTAAATACTTTATATATTTT
*
20012718 AATTTACTTTAAATACTTTATATATTTT
1 AATTTAATTTAAATACTTTATATATTTT
20012746 TTTAAATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (28 bp):
AATTTAATTTAAATACTTTATATATTTT
Found at i:20012841 original size:14 final size:14
Alignment explanation
Indices: 20012786--20012860 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
20012776 ATCCACTATT
*
20012786 TTTTATTATCATATA
1 TTTTATT-TTATATA
* *
20012801 TTTTATCTATAAATTA
1 TTTTAT-TTTATA-TA
* *
20012817 TATTATATTATATA
1 TTTTATTTTATATA
20012831 TTTTATTTTATATA
1 TTTTATTTTATATA
*
20012845 -TTT-CTTTATATA
1 TTTTATTTTATATA
20012857 TTTT
1 TTTT
20012861 TTATAAAATT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
12 8 0.17
13 6 0.13
14 14 0.30
15 11 0.23
16 8 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:20012852 original size:12 final size:11
Alignment explanation
Indices: 20012836--20012865 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
20012826 ATATATTTTA
20012836 TTTTATATATT
1 TTTTATATATT
20012847 TCTTTATATATT
1 T-TTTATATATT
20012859 TTTTATA
1 TTTTATA
20012866 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:20012883 original size:20 final size:21
Alignment explanation
Indices: 20012855--20012894 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
20012845 TTTCTTTATA
*
20012855 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
20012875 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
20012895 AATAGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:20013306 original size:20 final size:18
Alignment explanation
Indices: 20013270--20013310 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
20013260 CTCATATATA
20013270 TTTTTTATTATATATTAT
1 TTTTTTATTATATATTAT
*
20013288 TTTTTTTTTATACTAATTAT
1 TTTTTTATTATA-T-ATTAT
20013308 TTT
1 TTT
20013311 ACCATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 1 0.05
20 8 0.40
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTTATTATATATTAT
Found at i:20013350 original size:10 final size:10
Alignment explanation
Indices: 20013335--20013392 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
20013325 TGCAAAATAC
20013335 TTATTATATT
1 TTATTATATT
20013345 TTATTAT-TT
1 TTATTATATT
20013354 TATATTATATT
1 T-TATTATATT
**
20013365 TCCTTATATT
1 TTATTATATT
20013375 TTATTCATATT
1 TTATT-ATATT
*
20013386 ATATTAT
1 TTATTAT
20013393 TATACATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 3 0.08
10 25 0.62
11 12 0.30
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (10 bp):
TTATTATATT
Found at i:20013356 original size:15 final size:15
Alignment explanation
Indices: 20013336--20013395 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
20013326 GCAAAATACT
20013336 TATTATATTTTATTA
1 TATTATATTTTATTA
* *
20013351 TTTTATATTATATT-
1 TATTATATTTTATTA
*
20013365 TCCTTATATTTTATTCA
1 T-ATTATATTTTATT-A
20013382 TATTATATTATTAT
1 TATTATATT-TTAT
20013396 ACATAACTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
14 1 0.03
15 23 0.64
16 7 0.19
17 5 0.14
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (15 bp):
TATTATATTTTATTA
Found at i:20013362 original size:5 final size:5
Alignment explanation
Indices: 20013336--20013392 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
20013326 GCAAAATACT
* * * *
20013336 TATTA TATTT TATTA TTTTA TATTA TATT- TCCTTA TATTT TATTCA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA T-ATTA TATTA TATT-A TATTA
20013387 TATTA T
1 TATTA T
20013393 TATACATAAC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
4 1 0.02
5 35 0.85
6 5 0.12
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (5 bp):
TATTA
Found at i:20018803 original size:83 final size:83
Alignment explanation
Indices: 20018664--20018836 Score: 337
Period size: 83 Copynumber: 2.1 Consensus size: 83
20018654 TGAAAACTGC
20018664 ACCAGATTCAAGAAGGCCGTGGAGAGGCTTATCAAGATGGGGGTTGTGAAATTCGATAGTACCCC
1 ACCAGATTCAAGAAGGCCGTGGAGAGGCTTATCAAGATGGGGGTTGTGAAATTCGATAGTACCCC
20018729 TAATGCTGAAAACCCGTT
66 TAATGCTGAAAACCCGTT
*
20018747 ACCAGATTCAAGAAGGCCGTGGAGAGGCTTATCAAGATGGGGGTTGTGAAATTCGATAGTAGCCC
1 ACCAGATTCAAGAAGGCCGTGGAGAGGCTTATCAAGATGGGGGTTGTGAAATTCGATAGTACCCC
20018812 TAATGCTGAAAACCCGTT
66 TAATGCTGAAAACCCGTT
20018830 ACCAGAT
1 ACCAGAT
20018837 CATGGCAATC
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 89 1.00
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.23
Consensus pattern (83 bp):
ACCAGATTCAAGAAGGCCGTGGAGAGGCTTATCAAGATGGGGGTTGTGAAATTCGATAGTACCCC
TAATGCTGAAAACCCGTT
Found at i:20025710 original size:203 final size:204
Alignment explanation
Indices: 20025350--20025902 Score: 894
Period size: 203 Copynumber: 2.7 Consensus size: 204
20025340 GCAGATCTGG
*
20025350 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
*
20025415 GATTTGGCTTTCATGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCA--TGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
20025480 AGAGCAGATAGAAGTTTGGAGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
128 AGAACAAATCGAAGTTTGGAGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
20025545 CA-ATGATTAGA
193 CAGATGATTAGA
*
20025556 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCT
* *
20025620 GATTTAGCTTTCATGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
65 GATTTGGCTTTCATGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
*
20025685 AACAAATCGAAGTTTGGTGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCA
130 AACAAATCGAAGTTTGGAGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCA
20025750 GATGATTAGA
195 GATGATTAGA
* * *
20025760 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
20025825 ATTTGGTTTTCGCGTGCTTACGCTGAAGTAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTT--CATGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
20025890 GAACAAATCGAAG
129 GAACAAATCGAAG
20025903 AAGCAGATTT
Statistics
Matches: 323, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
203 111 0.34
204 77 0.24
205 67 0.21
206 68 0.21
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (204 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCATGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAATCGAAGTTTGGAGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAG
ATGATTAGA
Found at i:20027465 original size:28 final size:28
Alignment explanation
Indices: 20027434--20027489 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
20027424 TTTCTAATTA
* * *
20027434 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTGTATATTTT
* *
20027462 AATTTACTTTAAATACTTTGTATATTTT
1 AATTCAATTTAAATACTTTGTATATTTT
20027490 TTTAAATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTGTATATTTT
Found at i:20027535 original size:17 final size:17
Alignment explanation
Indices: 20027515--20027548 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
20027505 TATATTACTA
20027515 TTATTATCCAT-TATTTT
1 TTATTAT-CATATATTTT
20027532 TTATTATCATATATTTT
1 TTATTATCATATATTTT
20027549 ATCTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATCATATATTTT
Found at i:20027585 original size:14 final size:14
Alignment explanation
Indices: 20027530--20027604 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
20027520 ATCCATTATT
*
20027530 TTTTATTATCATATA
1 TTTTATT-TTATATA
* *
20027545 TTTTATCTATAAATTA
1 TTTTAT-TTTATA-TA
* *
20027561 TATTATATTATATA
1 TTTTATTTTATATA
20027575 TTTTATTTTATATA
1 TTTTATTTTATATA
*
20027589 -TTT-CTTTATATA
1 TTTTATTTTATATA
20027601 TTTT
1 TTTT
20027605 TTATAAAATT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
12 8 0.17
13 6 0.13
14 14 0.30
15 11 0.23
16 8 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:20027596 original size:12 final size:11
Alignment explanation
Indices: 20027580--20027609 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
20027570 ATATATTTTA
20027580 TTTTATATATT
1 TTTTATATATT
20027591 TCTTTATATATT
1 T-TTTATATATT
20027603 TTTTATA
1 TTTTATA
20027610 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:20027627 original size:20 final size:21
Alignment explanation
Indices: 20027599--20027638 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
20027589 TTTCTTTATA
*
20027599 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
20027619 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
20027639 AATGGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:20027981 original size:18 final size:18
Alignment explanation
Indices: 20027955--20027995 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
20027945 TACCATATTA
*
20027955 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
20027973 TATTACATACTATATTTT
1 TATTACATACTATATTTT
20027991 TATTA
1 TATTA
20027996 TCCAACATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:20028133 original size:21 final size:22
Alignment explanation
Indices: 20028107--20028167 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 22
20028097 GCAAAATACT
20028107 TATTATATTT-TTATTATTTTA
1 TATTATATTTATTATTATTTTA
20028128 TATTATATTTCATTA-TATTTTA
1 TATTATATTT-ATTATTATTTTA
*
20028150 T-TCATATTATATTATTAT
1 TATTATATT-TATTATTAT
20028168 ACATAACTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
21 20 0.57
22 12 0.34
23 3 0.09
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTATTATTATTTTA
Found at i:20028161 original size:5 final size:5
Alignment explanation
Indices: 20028107--20028164 Score: 55
Period size: 5 Copynumber: 11.2 Consensus size: 5
20028097 GCAAAATACT
* * *
20028107 TATTA TATTTT TATTA TTTTA TATTA TATT- TCATTA TATTT TATTCA
1 TATTA TA-TTA TATTA TATTA TATTA TATTA T-ATTA TATTA TATT-A
20028154 TATTA TATTA T
1 TATTA TATTA T
20028165 TATACATAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
4 1 0.02
5 33 0.77
6 9 0.21
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (5 bp):
TATTA
Found at i:20033584 original size:57 final size:57
Alignment explanation
Indices: 20033489--20033625 Score: 211
Period size: 57 Copynumber: 2.4 Consensus size: 57
20033479 ATCACATAAC
* * *
20033489 AGGATTACCAGTCCAGGCTAATTCCTGTCTCTAGCATATGCTCACAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCTAACATATGCTCACAAGAGCTCAATT
* * * *
20033546 AGGATTACCAGTCCAAGCTAAATCCTTTCTGTAACATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCTAACATATGCTCACAAGAGCTCAATT
20033603 AGGATTACCAGTCCAGGCTAAAT
1 AGGATTACCAGTCCAGGCTAAAT
20033626 TCTAATTGTA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 72 1.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTGTCTCTAACATATGCTCACAAGAGCTCAATT
Found at i:20040799 original size:125 final size:124
Alignment explanation
Indices: 20040577--20040974 Score: 548
Period size: 125 Copynumber: 3.2 Consensus size: 124
20040567 AAGGCCAAAT
* *
20040577 AGGAACTATTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTAATAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTG-GAGCTTTTTTCAGTAATTTTGCTAACAGTGCA
* *
20040642 TCCCGCTTGAAGCATTTTTGACACTATTTTTCAGAATCGTCTTCTCAAAATTATTTTTTC
65 TCCTGCTTGAAGCATTTTTGAAACTATTTTTCAGAATCGTCTTCTCAAAATTATTTTTTC
* * * *
20040702 AGGAACTACTGTAGAAAAATAGCATCCACGTAGGAGCTTTTTTCAGTAATTTTGTTAACAATGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGT-GGAGCTTTTTTCAGTAATTTTGCTAACAGTGCA
* * * *
20040767 TCCTGCTTGAAGCGTTTTTGAAACTATTTTTCAAAATCTTCTTTTCAAAATTATTTTTTC
65 TCCTGCTTGAAGCATTTTTGAAACTATTTTTCAGAATCGTCTTCTCAAAATTATTTTTTC
*
20040827 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGGAGCTTTTTTCAATAATTTTGCTAACAGTGC
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGT--GGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
* * *
20040892 ATCCTGCTTGAAGCATTTTT-AACATTATCTTTTCAGAA-CTGTTTTCTCAAAATTAATTTTTC
64 ATCCTGCTTGAAGCATTTTTGAA-ACTAT-TTTTCAGAATC-GTCTTCTCAAAATTATTTTTTC
* * *
20040954 TGAAACTACTATAGAAAAAGA
1 AGGAACTACTGTAGAAAAAGA
20040975 CAAAATCCTT
Statistics
Matches: 240, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
125 142 0.59
126 54 0.22
127 44 0.18
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.37
Consensus pattern (124 bp):
AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCAT
CCTGCTTGAAGCATTTTTGAAACTATTTTTCAGAATCGTCTTCTCAAAATTATTTTTTC
Found at i:20041072 original size:34 final size:33
Alignment explanation
Indices: 20041032--20041159 Score: 112
Period size: 34 Copynumber: 3.7 Consensus size: 33
20041022 CACAAAATTA
*
20041032 TTAAAAAAACTAAACCCTAATTTACTTAATTTT
1 TTAAAAAAACTAAACCCTAATTTAATTAATTTT
** * *
20041065 CTTAAAAACTCTAAACTCTAATTTAATTCATTTAT
1 -TTAAAAAAACTAAACCCTAATTTAATTAATTT-T
*** * *
20041100 TTAAAACCCCTAAAGCTTAATTTAATTAAATTTT
1 TTAAAAAAACTAAACCCTAATTTAATT-AATTTT
*
20041134 TTAAAAAAACTCTAAACTCTAATTTA
1 TTAAAAAAA--CTAAACCCTAATTTA
20041160 TTTTTTAAAA
Statistics
Matches: 73, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
34 56 0.77
35 5 0.07
36 12 0.16
ACGTcount: A:0.44, C:0.16, G:0.01, T:0.40
Consensus pattern (33 bp):
TTAAAAAAACTAAACCCTAATTTAATTAATTTT
Found at i:20042496 original size:14 final size:13
Alignment explanation
Indices: 20042473--20042522 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
20042463 TTTATCTCCC
20042473 AAAATAAATATAT
1 AAAATAAATATAT
20042486 AAAATTAAATATAT
1 AAAA-TAAATATAT
* *
20042500 ATATATATATATAT
1 A-AAATAAATATAT
20042514 ATAAATAAA
1 A-AAATAAA
20042523 AGGAAAAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 25 0.81
15 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATAAATATAT
Found at i:20044227 original size:195 final size:195
Alignment explanation
Indices: 20043895--20044283 Score: 546
Period size: 195 Copynumber: 2.0 Consensus size: 195
20043885 CCTCCAGAGT
* *
20043895 TCAAGACACTAGCAATTAATTCTATTTTCGAAATTCATCGCTTGCCTACCTGACTGGACCAGAAA
1 TCAAGACACTAGCAATTAATTCTATTTTCGAAATTCATCACTTGCCTACCTGACGGGACCAGAAA
** * * *
20043960 AGTTATTTCATCGGTCGAAATTAATAGTTTCAGAACTAGACCGAGAATCAATCAATGTACTGGTC
66 AGTTATTTCATCAATCGAAATCAATAGTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGTC
* * *
20044025 TAAATATATGGGTTGAACCGATTGACCCGCGAATCGATATAGACCGATTAAACTAAGTTAAAAAG
131 TAAATATATGGGTTGAACCAATTGACCCGCGAATCGATACAAACCGATTAAACTAAGTTAAAAAG
* * * * * *
20044090 TCAAGACACTAGCGATTAATTCTATTTTTGAACTTCATCACTTGGCTACTTGACGGGACTAGAAA
1 TCAAGACACTAGCAATTAATTCTATTTTCGAAATTCATCACTTGCCTACCTGACGGGACCAGAAA
* * * * *
20044155 AGTTATTTCATTAATCGAAATCAATATTTTTAGAACTAGACCGATAACCAATCAAGGTATTGGT-
66 AGTTATTTCATCAATCGAAATCAATAGTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGTC
* * *
20044219 TCAAATATATGGGTTGAATCAATTGACCCGCGAATCGATACAAACCGATTGATCTAAGTTAAAAA
131 T-AAATATATGGGTTGAACCAATTGACCCGCGAATCGATACAAACCGATTAAACTAAGTTAAAAA
20044284 AACCAATTGA
Statistics
Matches: 169, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
194 1 0.01
195 168 0.99
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (195 bp):
TCAAGACACTAGCAATTAATTCTATTTTCGAAATTCATCACTTGCCTACCTGACGGGACCAGAAA
AGTTATTTCATCAATCGAAATCAATAGTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGTC
TAAATATATGGGTTGAACCAATTGACCCGCGAATCGATACAAACCGATTAAACTAAGTTAAAAAG
Found at i:20046590 original size:132 final size:132
Alignment explanation
Indices: 20046353--20046616 Score: 528
Period size: 132 Copynumber: 2.0 Consensus size: 132
20046343 TATAACTAGA
20046353 AGAAACTCATCAGGACCATTGTTATTTGACAGTGAAATTGAAAGTATTACTCGCAGAAACTGTAA
1 AGAAACTCATCAGGACCATTGTTATTTGACAGTGAAATTGAAAGTATTACTCGCAGAAACTGTAA
20046418 AGAAGCAAGCAAAAATGAAGAAGAGGATATTATTATTACTGAAGAGATGGGTGATAATTAGAATA
66 AGAAGCAAGCAAAAATGAAGAAGAGGATATTATTATTACTGAAGAGATGGGTGATAATTAGAATA
20046483 AT
131 AT
20046485 AGAAACTCATCAGGACCATTGTTATTTGACAGTGAAATTGAAAGTATTACTCGCAGAAACTGTAA
1 AGAAACTCATCAGGACCATTGTTATTTGACAGTGAAATTGAAAGTATTACTCGCAGAAACTGTAA
20046550 AGAAGCAAGCAAAAATGAAGAAGAGGATATTATTATTACTGAAGAGATGGGTGATAATTAGAATA
66 AGAAGCAAGCAAAAATGAAGAAGAGGATATTATTATTACTGAAGAGATGGGTGATAATTAGAATA
20046615 AT
131 AT
20046617 CAGCTACCTC
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 132 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (132 bp):
AGAAACTCATCAGGACCATTGTTATTTGACAGTGAAATTGAAAGTATTACTCGCAGAAACTGTAA
AGAAGCAAGCAAAAATGAAGAAGAGGATATTATTATTACTGAAGAGATGGGTGATAATTAGAATA
AT
Found at i:20050750 original size:27 final size:27
Alignment explanation
Indices: 20050720--20050773 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
20050710 TAGTTTACTT
*
20050720 AGTTTAAAATCTTAGTTTTTAATCACC
1 AGTTTAAAATCCTAGTTTTTAATCACC
*
20050747 AGTTTAAAATCCTAGTTTTTAGTCACC
1 AGTTTAAAATCCTAGTTTTTAATCACC
20050774 CTTTTCAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (27 bp):
AGTTTAAAATCCTAGTTTTTAATCACC
Found at i:20056967 original size:25 final size:25
Alignment explanation
Indices: 20056933--20056986 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
20056923 TCTCCTAAAG
*
20056933 TTTAATTTTAGTCAATTATCTAATTT
1 TTTAATTTTAGTCAATTAT-TAATAT
* *
20056959 TTTAA-TTTATTGAATTATTAATAT
1 TTTAATTTTAGTCAATTATTAATAT
20056983 TTTA
1 TTTA
20056987 TATTAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 9 0.36
25 11 0.44
26 5 0.20
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTAATTTTAGTCAATTATTAATAT
Found at i:20056999 original size:25 final size:25
Alignment explanation
Indices: 20056946--20056999 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
20056936 AATTTTAGTC
* * *
20056946 AATTATCTAATTTTTTAATTTATTG
1 AATTATCTAATATTTTAATTAATTA
20056971 AATTAT-TAATATTTTATATTAATTA
1 AATTATCTAATATTTTA-ATTAATTA
20056996 AATT
1 AATT
20057000 TTTGAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (25 bp):
AATTATCTAATATTTTAATTAATTA
Found at i:20063551 original size:30 final size:28
Alignment explanation
Indices: 20063515--20063615 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
20063505 GACAAGATTG
* * *
20063515 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATATA
*
20063545 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
20063573 GCACTAAGTGTGCGAGTTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
20063602 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
20063616 GATTCACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 26 0.41
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:20069552 original size:40 final size:38
Alignment explanation
Indices: 20069503--20069610 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
20069493 ATCACGATTT
*
20069503 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
20069543 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
20069583 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
20069611 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:20069570 original size:80 final size:80
Alignment explanation
Indices: 20069462--20069610 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
20069452 TATGGTAACC
* * * *
20069462 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
20069526 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
20069542 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
20069607 CCGG
66 CCGG
20069611 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:20077597 original size:80 final size:79
Alignment explanation
Indices: 20077513--20077660 Score: 181
Period size: 80 Copynumber: 1.9 Consensus size: 79
20077503 TATGGTAACC
* * * *
20077513 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCAC-AATGCCTTCGGGTCTTAA
20077577 CCCGGATAGAATGACT
64 CCCGGATAGAATGACT
* * * * * *
20077593 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACATTGCCTTCGGGTCTTAACC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
20077658 CGG
66 CGG
20077661 TTATAATTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
79 22 0.39
80 35 0.61
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.22
Consensus pattern (79 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
CGGATAGAATGACT
Found at i:20077660 original size:39 final size:40
Alignment explanation
Indices: 20077522--20077666 Score: 139
Period size: 40 Copynumber: 3.6 Consensus size: 40
20077512 CCGCACCAAG
* * * * * * * *
20077522 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* ** *
20077562 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
20077602 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-ATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
20077641 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
20077667 TTTCCAGCAT
Statistics
Matches: 87, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
39 25 0.29
40 62 0.71
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
Found at i:20084990 original size:40 final size:40
Alignment explanation
Indices: 20084945--20085111 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
20084935 CGGAATATAA
20084945 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
20084985 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
20085025 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
20085065 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
20085104 CCGGATAT
1 CCGGATAT
20085112 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:20087736 original size:48 final size:48
Alignment explanation
Indices: 20087664--20087790 Score: 148
Period size: 48 Copynumber: 2.6 Consensus size: 48
20087654 CTCGCACACA
* * * * * * * *
20087664 AAGTGCTCATATAATGGCCAGAAGCCAACTTAATGTATCTTACACCCG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCG
* *
20087712 AAGTGCTAATATCATAGCCCGAAGCCAAATCAATGAAGCTCGCACCCG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCG
20087760 AAGTG-TCAATATCATGGCCCGAAGCCAAATC
1 AAGTGCT-AATATCATGGCCCGAAGCCAAATC
20087791 TATGTATCCC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
47 1 0.01
48 66 0.99
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (48 bp):
AAGTGCTAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCG
Found at i:20094845 original size:17 final size:17
Alignment explanation
Indices: 20094823--20094864 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
20094813 AATAAAACGG
20094823 AGTAAGCTATATAGCTT
1 AGTAAGCTATATAGCTT
20094840 AGTAAGCTATATAGCTT
1 AGTAAGCTATATAGCTT
20094857 AGTAAGCT
1 AGTAAGCT
20094865 CGTATGAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (17 bp):
AGTAAGCTATATAGCTT
Found at i:20099876 original size:29 final size:29
Alignment explanation
Indices: 20099844--20099916 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
20099834 CTTCGAGCTC
*
20099844 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
20099873 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
20099902 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
20099917 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:20114805 original size:8 final size:8
Alignment explanation
Indices: 20114792--20114821 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
20114782 TGGCACAGCC
20114792 TCCTACAA
1 TCCTACAA
20114800 TCCTACAA
1 TCCTACAA
20114808 TCCTACAA
1 TCCTACAA
20114816 TCCTAC
1 TCCTAC
20114822 CATTTTGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.33, C:0.40, G:0.00, T:0.27
Consensus pattern (8 bp):
TCCTACAA
Found at i:20119031 original size:29 final size:29
Alignment explanation
Indices: 20118990--20119063 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
20118980 GTTGAGAGAT
** *
20118990 TGGCACTGTGTGTGCGAGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
20119019 TGGCACTAAGTGTGCGAGTTTAAAGTATA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
20119048 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
20119064 TGGCTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:20121372 original size:40 final size:40
Alignment explanation
Indices: 20121307--20121509 Score: 259
Period size: 40 Copynumber: 5.1 Consensus size: 40
20121297 TGGAATTTAA
* * *
20121307 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
20121347 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
20121387 CCGGATATAGTAACTCGCACGAATGCCTTCGGAACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
20121427 CCGAATATAATAACTCACACAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
20121466 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
20121506 CCGG
1 CCGG
20121510 TTATCATCCG
Statistics
Matches: 141, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 108 0.77
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:20129626 original size:40 final size:40
Alignment explanation
Indices: 20129570--20129772 Score: 250
Period size: 40 Copynumber: 5.1 Consensus size: 40
20129560 CGGAATTTAA
* * *
20129570 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
20129610 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTATC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
20129650 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
20129690 CCGGATATAATAACTCACACAATTGCCTTCAGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
20129729 CTGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
20129769 CCGG
1 CCGG
20129773 TTATCATCCG
Statistics
Matches: 139, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 31 0.22
40 107 0.77
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:20132868 original size:31 final size:31
Alignment explanation
Indices: 20132825--20132888 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
20132815 CCTTTTCATA
*
20132825 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
* **
20132856 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
20132887 TT
1 TT
20132889 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTAGGCCGAAGCCT
Found at i:20133180 original size:24 final size:24
Alignment explanation
Indices: 20133093--20133245 Score: 258
Period size: 24 Copynumber: 6.4 Consensus size: 24
20133083 CTAGAGGCCT
20133093 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
20133117 AGCCCTCTTTTAATAACTGGGGCATA
1 AG-CC-CTTTTAATAACTGGGGCATA
20133143 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
20133166 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
20133190 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
20133213 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
20133237 AGCCCTTTT
1 AGCCCTTTT
20133246 GCACTTCCTC
Statistics
Matches: 125, Mismatches: 0, Indels: 8
0.94 0.00 0.06
Matches are distributed among these distances:
23 46 0.37
24 53 0.42
25 23 0.18
26 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:20133185 original size:47 final size:47
Alignment explanation
Indices: 20133100--20133244 Score: 265
Period size: 47 Copynumber: 3.1 Consensus size: 47
20133090 CCTAGCCTCT
20133100 TTTAATAACTGGGGCA-AAGCCCTCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAG-CC-CTTTTAATAACTGGGGCATAAGCCC
20133148 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
20133195 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
20133242 TTT
1 TTT
20133245 TGCACTTCCT
Statistics
Matches: 96, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
47 75 0.78
48 18 0.19
49 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:20133326 original size:20 final size:20
Alignment explanation
Indices: 20133303--20133341 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
20133293 ATCTCGTGTT
20133303 CATATCATACATATCATGTG
1 CATATCATACATATCATGTG
20133323 CATATCATACATATCATGT
1 CATATCATACATATCATGT
20133342 TTATCAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (20 bp):
CATATCATACATATCATGTG
Found at i:20133406 original size:25 final size:25
Alignment explanation
Indices: 20133378--20133425 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
20133368 ATATATAAAC
* * *
20133378 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
20133403 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
20133426 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:20140951 original size:31 final size:31
Alignment explanation
Indices: 20140908--20140971 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
20140898 CCTTTTCATA
20140908 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
20140939 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
20140970 TT
1 TT
20140972 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:20141250 original size:23 final size:24
Alignment explanation
Indices: 20141164--20141327 Score: 234
Period size: 23 Copynumber: 7.0 Consensus size: 24
20141154 GCTTTATCAT
*
20141164 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
20141189 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
20141214 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
20141236 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
20141260 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
20141282 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
20141306 ATAACTGGGGCATAA-CCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
20141328 GCACTTCCTC
Statistics
Matches: 130, Mismatches: 1, Indels: 18
0.87 0.01 0.12
Matches are distributed among these distances:
22 20 0.15
23 44 0.34
24 41 0.32
25 25 0.19
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:20141399 original size:9 final size:9
Alignment explanation
Indices: 20141385--20141441 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
20141375 ATCTCGTGTG
20141385 CATATCATA
1 CATATCATA
*
20141394 CATATCATGTG
1 CATATCA--TA
20141405 CATATCATA
1 CATATCATA
* *
20141414 CATGTCATGTG
1 CATATCA--TA
20141425 CATATCATA
1 CATATCATA
20141434 CATATCAT
1 CATATCAT
20141442 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:20141404 original size:20 final size:20
Alignment explanation
Indices: 20141381--20141443 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
20141371 GAACATCTCG
20141381 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
20141401 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
20141421 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
20141441 TGT
1 TGT
20141444 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:20141508 original size:25 final size:25
Alignment explanation
Indices: 20141480--20141527 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
20141470 ATATATAAAC
* * *
20141480 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
20141505 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
20141528 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:20143481 original size:13 final size:13
Alignment explanation
Indices: 20143463--20143487 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20143453 AAGTAATCGC
20143463 ACACGGGCGTGTT
1 ACACGGGCGTGTT
20143476 ACACGGGCGTGT
1 ACACGGGCGTGT
20143488 CCCTGCCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:20145161 original size:13 final size:13
Alignment explanation
Indices: 20145143--20145169 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
20145133 GTTCGGCAGG
20145143 GACACGCTCGTGT
1 GACACGCTCGTGT
20145156 GACACGCTCGTGT
1 GACACGCTCGTGT
20145169 G
1 G
20145170 CGATTACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACACGCTCGTGT
Found at i:20152124 original size:46 final size:46
Alignment explanation
Indices: 20152074--20152244 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
20152064 TGGTTGAGCA
*
20152074 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
20152120 TCCGAACTCGTTGAGTTGAGTCCTAGTTC-GTGAAATGTAACTAG-GCAT-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATG
*
20152168 T-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
20152213 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACT
20152245 CAGGGGCGGG
Statistics
Matches: 102, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 58 0.57
47 29 0.28
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20152235 original size:93 final size:93
Alignment explanation
Indices: 20152071--20152241 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
20152061 GGATGGTTGA
*
20152071 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
*
20152136 TGAGTCCTAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
20152164 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
20152228 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
20152242 ACTCAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:20157581 original size:46 final size:46
Alignment explanation
Indices: 20157531--20157703 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
20157521 TGGTTGAGCA
20157531 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
20157577 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
20157622 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
20157670 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
20157704 GGGCGGGTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20157687 original size:93 final size:93
Alignment explanation
Indices: 20157528--20157698 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
20157518 GGATGGTTGA
* *
20157528 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
20157593 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
20157621 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
20157686 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
20157699 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:20163155 original size:45 final size:46
Alignment explanation
Indices: 20163040--20163163 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
20163030 GGTTGAGCAT
* * *
20163040 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGC
*
20163086 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATAC-AACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGC
*
20163131 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
20163164 GGGCGGGTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 34 0.47
46 38 0.53
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGC
Found at i:20168581 original size:46 final size:46
Alignment explanation
Indices: 20168531--20168698 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
20168521 TGAGCATCAA
20168531 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
20168577 AACTCGTTGAGTTGAGTCTGAGTTC-CTGA--AATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
20168624 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
20168670 AGCTCATTGAGTTGAGTCC-AGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
20168699 GGGGTGGGTT
Statistics
Matches: 101, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 14 0.14
46 44 0.44
47 28 0.28
48 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:20191018 original size:71 final size:71
Alignment explanation
Indices: 20190933--20191096 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
20190923 CGATTTGTCT
20190933 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCAACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCAACCTAGCTACATTTAT
20190998 CTTTCA
66 CTTTCA
*
20191004 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCAACCTAGCTACATTTAT
20191069 CTTTCA
66 CTTTCA
*
20191075 CGTAGCTCTCTTGCCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
20191097 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCAACCTAGCTACATTTAT
CTTTCA
Found at i:20191134 original size:71 final size:70
Alignment explanation
Indices: 20190933--20191130 Score: 231
Period size: 71 Copynumber: 2.8 Consensus size: 70
20190923 CGATTTGTCT
* * * * * *
20190933 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCAACCTAGCTACATTTAT
1 CGTAGCTCTCTTGCCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
20190998 CTTTCA
65 CTTTCA
* * * * *
20191004 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGCCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
20191069 CTTTCA
65 CTTTCA
* *
20191075 CGTAGCTCTCTTGCCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGCCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
20191131 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGCCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:20207713 original size:12 final size:12
Alignment explanation
Indices: 20207696--20207728 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
20207686 ATTTAATTTG
20207696 TTTTCTCTTTTC
1 TTTTCTCTTTTC
20207708 TTTTCT-TTTTC
1 TTTTCTCTTTTC
20207719 TTTT-TCTTTT
1 TTTTCTCTTTT
20207729 TTATGTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTCTCTTTTC
Found at i:20207719 original size:6 final size:6
Alignment explanation
Indices: 20207696--20207729 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
20207686 ATTTAATTTG
20207696 TTTTCT CTTTTC- TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT -TTTTCT TTTTCT TTTTCT TTTTCT TTTT
20207730 TATGTTTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.62
7 5 0.19
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:20207778 original size:26 final size:24
Alignment explanation
Indices: 20207720--20207779 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 24
20207710 TTCTTTTTCT
*
20207720 TTTTCTTTTTTATGTTTATGTTTA
1 TTTTCATTTTTATGTTTATGTTTA
20207744 -TTTCTATTTTTAGTTGTTT-TGTTTTA
1 TTTTC-ATTTTTA--TGTTTATG-TTTA
20207770 TTTTCATTTT
1 TTTTCATTTT
20207780 CTTGTACTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
23 4 0.13
24 6 0.20
25 2 0.07
26 14 0.47
27 4 0.13
ACGTcount: A:0.12, C:0.05, G:0.08, T:0.75
Consensus pattern (24 bp):
TTTTCATTTTTATGTTTATGTTTA
Found at i:20210165 original size:20 final size:22
Alignment explanation
Indices: 20210135--20210182 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
20210125 GAATATGCTG
*
20210135 TAAATTGAAA-GTTTTTGATAGA
1 TAAA-TGAAAGGTTATTGATAGA
20210157 -AAATGAAAGGTTATTGATAGA
1 TAAATGAAAGGTTATTGATAGA
20210178 TAAAT
1 TAAAT
20210183 CACTTATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 14 0.61
22 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (22 bp):
TAAATGAAAGGTTATTGATAGA
Found at i:20210882 original size:29 final size:29
Alignment explanation
Indices: 20210842--20210904 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
20210832 TACCACGTGG
*
20210842 AAAGGGATAGCTTCGACTATCGAATGTGA
1 AAAGGGATAGCTTCGACTATCGAATATGA
* **
20210871 AAAGGGATAGCTTTGGTTATCGAATATGA
1 AAAGGGATAGCTTCGACTATCGAATATGA
20210900 AAAGG
1 AAAGG
20210905 AAAGGTATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.25
Consensus pattern (29 bp):
AAAGGGATAGCTTCGACTATCGAATATGA
Found at i:20215485 original size:26 final size:25
Alignment explanation
Indices: 20215433--20215503 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
20215423 CTCTTTCAAT
*
20215433 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
20215458 AACTGGGGCAAAGCCCCTTTTCGGTA
1 AACTGGGGCAAAG-CCCTTTTCGATA
** *
20215484 AACTAAGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
20215504 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 20 0.50
26 20 0.50
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:20215735 original size:27 final size:27
Alignment explanation
Indices: 20215705--20215894 Score: 245
Period size: 27 Copynumber: 7.0 Consensus size: 27
20215695 AGGGGCAAAT
* * * *
20215705 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
20215732 GGTAATTGTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
20215759 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
20215786 AGTAATTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
20215813 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
20215840 GGTAATTCTACCCTACAGCGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
20215867 GGTAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
20215894 G
1 G
20215895 ATATTTTACA
Statistics
Matches: 143, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:20215978 original size:28 final size:27
Alignment explanation
Indices: 20215897--20216037 Score: 120
Period size: 27 Copynumber: 5.2 Consensus size: 27
20215887 GTATTTCGAT
** * *
20215897 ATTTTACAAATCGAGAGTATTTTGATA
1 ATTTTACAAATTAAGGGTATTTTGGTA
* *
20215924 ATTTCACAAATCAAGGGTATTTTGGTA
1 ATTTTACAAATTAAGGGTATTTTGGTA
*
20215951 ATTTTACAAGTTAAGGGGTATTTTGGTA
1 ATTTTACAAATTAA-GGGTATTTTGGTA
* * * *
20215979 ATTTTATAAACTAAGAGTATTTTAGTA
1 ATTTTACAAATTAAGGGTATTTTGGTA
** ** **
20216006 ATTTTGTAAACCAAGGGTATTTCAGTA
1 ATTTTACAAATTAAGGGTATTTTGGTA
20216033 ATTTT
1 ATTTT
20216038 GTGGTAATTC
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 73 0.75
28 24 0.25
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (27 bp):
ATTTTACAAATTAAGGGTATTTTGGTA
Found at i:20216080 original size:27 final size:27
Alignment explanation
Indices: 20216040--20216224 Score: 289
Period size: 27 Copynumber: 6.9 Consensus size: 27
20216030 GTAATTTTGT
20216040 GGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
20216067 GATAATTCTGTAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
20216094 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* * *
20216121 GATAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
*
20216148 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTAAAAC
* *
20216175 GGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTAAAAC
20216202 GGTAATTCTGTAAATCGAGGGTA
1 GGTAATTCTGTAAATCGAGGGTA
20216225 CTTTGGTAAT
Statistics
Matches: 145, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.29
Consensus pattern (27 bp):
GGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:20216108 original size:54 final size:54
Alignment explanation
Indices: 20216039--20216224 Score: 327
Period size: 54 Copynumber: 3.4 Consensus size: 54
20216029 AGTAATTTTG
*
20216039 TGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
*
20216093 TGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
* *
20216147 TGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
*
20216201 TGGTAATTCTGTAAATCGAGGGTA
1 TGGTAATTCTATAAATCGAGGGTA
20216225 CTTTGGTAAT
Statistics
Matches: 126, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.29
Consensus pattern (54 bp):
TGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAA
Found at i:20216231 original size:27 final size:27
Alignment explanation
Indices: 20216039--20216249 Score: 287
Period size: 27 Copynumber: 7.8 Consensus size: 27
20216029 AGTAATTTTG
*
20216039 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAA
* * *
20216066 CGATAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAA
20216093 TGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAA
* *
20216120 CGATAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAA
20216147 TGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAA
* * *
20216174 CGGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAA
* ***
20216201 TGGTAATTCTGTAAATCGAGGGTACTT
1 TGGTAATTCTATAAATCGAGGGTAAAA
* *
20216228 TGGTAATTTTATAAATTGAGGG
1 TGGTAATTCTATAAATCGAGGG
20216250 CATTTTAGTA
Statistics
Matches: 164, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 164 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (27 bp):
TGGTAATTCTATAAATCGAGGGTAAAA
Found at i:20224352 original size:40 final size:40
Alignment explanation
Indices: 20224307--20224474 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
20224297 CGGAATATAA
20224307 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
20224347 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
20224387 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
20224427 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
20224467 CCGGATAT
1 CCGGATAT
20224475 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:20237841 original size:16 final size:16
Alignment explanation
Indices: 20237820--20237856 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
20237810 ATAGCCAAAC
*
20237820 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
*
20237836 TTTCGGTTTTTCAGCA
1 TTTCGGCTTTTCAGCA
20237852 TTTCG
1 TTTCG
20237857 AGATTTGCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.22, G:0.22, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:20238058 original size:21 final size:21
Alignment explanation
Indices: 20238029--20238068 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
20238019 AACTAAACAC
*
20238029 AAGTGACTCGAAAATCATCTT
1 AAGTCACTCGAAAATCATCTT
**
20238050 AAGTCACTCTTAAATCATC
1 AAGTCACTCGAAAATCATC
20238069 CATGACCATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (21 bp):
AAGTCACTCGAAAATCATCTT
Found at i:20244092 original size:26 final size:26
Alignment explanation
Indices: 20244062--20244117 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
20244052 TGAAATTCCC
20244062 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
20244088 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
20244114 ATCA
1 ATCA
20244118 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:20250458 original size:40 final size:40
Alignment explanation
Indices: 20250393--20250640 Score: 342
Period size: 40 Copynumber: 6.2 Consensus size: 40
20250383 TCTTCGGAAT
*
20250393 TTAG-CCGGATATAATCACAA--GCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CA-AATCGCACAAATGCCTTCGGGTC
* * * *
20250432 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAAATCGCACAAATGCCTTCGGGTC
20250472 TTAGCCCGGATATAACAAATCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAAATCGCACAAATGCCTTCGGGTC
*
20250512 TTAGCCCGAATATAACAAATCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAAATCGCACAAATGCCTTCGGGTC
20250552 TTAGCCCGGATATAACAAATCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAAATCGCACAAATGCCTTCGGGTC
* * * * *
20250592 TTAGCCCGGATATAATC-ACTAGCATAATTGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAAATCGCACAAATGCCTTCGGGTC
20250632 TTAGCCCGG
1 TTAGCCCGG
20250641 GTATCATTCA
Statistics
Matches: 189, Mismatches: 16, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 5 0.03
40 182 0.96
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAAATCGCACAAATGCCTTCGGGTC
Found at i:20257574 original size:27 final size:27
Alignment explanation
Indices: 20257544--20257746 Score: 262
Period size: 27 Copynumber: 7.4 Consensus size: 27
20257534 GGCATAATAA
*
20257544 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
20257571 TCATTTTACTCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
20257598 TCATTTTACCCCACAGGGGTATTACGA
1 TCATTTTACCCTACAGGGGTATTACGG
*
20257625 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
20257652 TCATTTTACCCTACAGTGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
20257679 TCATTTTACCCTATAGGGAGGGGTATTATGG
1 TCATTTTACCC--TA--CAGGGGTATTACGG
* *
20257710 TTATTTTACCCTACAGGGATATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
20257737 TCATTTTACC
1 TCATTTTACC
20257747 TATTTTAGGG
Statistics
Matches: 150, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
27 126 0.84
29 4 0.03
31 20 0.13
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:20260457 original size:16 final size:17
Alignment explanation
Indices: 20260432--20260470 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
20260422 ACTACAGTTT
*
20260432 TCAGTCTTCC-ACAGTC
1 TCAGTTTTCCTACAGTC
20260448 TCAGTTTTCCTACAGTC
1 TCAGTTTTCCTACAGTC
20260465 TCAGTT
1 TCAGTT
20260471 AACTCAGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.18, C:0.31, G:0.13, T:0.38
Consensus pattern (17 bp):
TCAGTTTTCCTACAGTC
Found at i:20261333 original size:33 final size:33
Alignment explanation
Indices: 20261271--20261334 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
20261261 ATGCAGTAAT
*
20261271 AGTCTGGGCCTGAGCCCTATTCAGTAACAGTAC
1 AGTCTGGGCCTGAGCCCTATTCAGAAACAGTAC
* *
20261304 AGTCTGGGCCTTAGCTCTATAT-AGAAACAGT
1 AGTCTGGGCCTGAGCCCTAT-TCAGAAACAGT
20261335 GTGGGCCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (33 bp):
AGTCTGGGCCTGAGCCCTATTCAGAAACAGTAC
Found at i:20261745 original size:27 final size:27
Alignment explanation
Indices: 20261714--20261911 Score: 227
Period size: 27 Copynumber: 7.4 Consensus size: 27
20261704 GTCATAATCA
* *
20261714 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
20261741 TCATTTTACTCTATAAGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
20261768 TCATTTTACCCTATAGGGACATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * ** *
20261795 TCA-TTTAACCAACAGTTGCATCACGG
1 TCATTTTACCCTACAGGGGCATTACGG
*
20261821 TCATTTTACCCTACAGGGGCATTACTG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
20261848 TCATTTTACCCTATAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
20261875 TTATTTTACCCTACAGGGGTATTATGG
1 TCATTTTACCCTACAGGGGCATTACGG
20261902 TCATTTTACC
1 TCATTTTACC
20261912 TATTTTTTGG
Statistics
Matches: 140, Mismatches: 30, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
26 19 0.14
27 121 0.86
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGG
Found at i:20261873 original size:107 final size:107
Alignment explanation
Indices: 20261714--20261907 Score: 289
Period size: 107 Copynumber: 1.8 Consensus size: 107
20261704 GTCATAATCA
* * *
20261714 TCATTTTACCATACAGGGGTATTACGGTCATTTTACTCTATAAGGGCATTACGGTCATTTTACCC
1 TCATTTTACCATACAGGGGCATTACGGTCATTTTACCCTATAAGGGCATTACGATCATTTTACCC
*
20261779 TATAGGGACATTACGGTCATTTAACCAACAGTTGCATCACGG
66 TACAGGGACATTACGGTCATTTAACCAACAGTTGCATCACGG
* * * *
20261821 TCATTTTACCCTACAGGGGCATTACTGTCATTTTACCCTATAGGGGCATTACGATTATTTTACCC
1 TCATTTTACCATACAGGGGCATTACGGTCATTTTACCCTATAAGGGCATTACGATCATTTTACCC
** *
20261886 TACAGGGGTATTATGGTCATTT
66 TACAGGGACATTACGGTCATTT
20261908 TACCTATTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
107 76 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (107 bp):
TCATTTTACCATACAGGGGCATTACGGTCATTTTACCCTATAAGGGCATTACGATCATTTTACCC
TACAGGGACATTACGGTCATTTAACCAACAGTTGCATCACGG
Found at i:20273107 original size:42 final size:42
Alignment explanation
Indices: 20273050--20273161 Score: 197
Period size: 42 Copynumber: 2.7 Consensus size: 42
20273040 AAACATCGAT
*
20273050 GCCACTGTCCCAGACAGGGTCTTACACAAAATCATATACGAA
1 GCCAATGTCCCAGACAGGGTCTTACACAAAATCATATACGAA
*
20273092 GCCAATGTCCCAGACAGGGTCTTCCACAAAATCATATACGAA
1 GCCAATGTCCCAGACAGGGTCTTACACAAAATCATATACGAA
*
20273134 GCCAATGTCCCAGACATGGTCTTACACA
1 GCCAATGTCCCAGACAGGGTCTTACACA
20273162 TAAAACAGAA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (42 bp):
GCCAATGTCCCAGACAGGGTCTTACACAAAATCATATACGAA
Found at i:20287230 original size:71 final size:71
Alignment explanation
Indices: 20287150--20287313 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
20287140 CGATTTGTCT
*
20287150 CGTAGCTCTCTTGTCTACATGGTGTCCTTTACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
20287215 ATTTCA
66 ATTTCA
20287221 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
*
20287286 CTTTCA
66 ATTTCA
20287292 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
20287314 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
ATTTCA
Found at i:20287351 original size:71 final size:70
Alignment explanation
Indices: 20287150--20287347 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
20287140 CGATTTGTCT
* * * *
20287150 CGTAGCTCTCTTGTCTACATGGTGTCCTTTACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTAC-ATACTTCGAATCACACATGCGACCTAGCTACATTTAT
20287215 ATTTCA
65 ATTTCA
* * * *
20287221 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
*
20287286 CTTTCA
65 ATTTCA
* *
20287292 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
20287348 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 3 0.03
71 92 0.78
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATA
TTTCA
Found at i:20294774 original size:69 final size:71
Alignment explanation
Indices: 20294692--20294853 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
20294682 CGATTTGTCT
20294692 CGTAGCTCTCTTGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
20294755 CTTTCA
66 CTTTCA
20294761 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
20294826 CTTTCA
66 CTTTCA
20294832 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
20294854 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 27 0.30
70 24 0.26
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:20294891 original size:71 final size:70
Alignment explanation
Indices: 20294692--20294887 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
20294682 CGATTTGTCT
* * *
20294692 CGTAGCTCTCTTGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
20294755 CTTTCA
65 CTTTCA
* * * *
20294761 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
20294826 CTTTCA
65 CTTTCA
* *
20294832 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
20294888 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 26 0.22
70 26 0.22
71 43 0.37
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:20297160 original size:13 final size:13
Alignment explanation
Indices: 20297144--20297176 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
20297134 TTTAATTAAA
*
20297144 TTAGTTAATTAGT
1 TTAGATAATTAGT
20297157 TTAGATAATTAGT
1 TTAGATAATTAGT
20297170 TTA-ATAA
1 TTAGATAA
20297177 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:20302552 original size:10 final size:9
Alignment explanation
Indices: 20302535--20302626 Score: 68
Period size: 8 Copynumber: 9.9 Consensus size: 9
20302525 TCCTCCTTTT
20302535 TTTTATTTA
1 TTTTATTTA
20302544 TTCTTATTTTTA
1 TT-TTA--TTTA
20302556 TTTTATCTTA
1 TTTTAT-TTA
20302566 TTTTATTTA
1 TTTTATTTA
*
20302575 TTTT-TAT-
1 TTTTATTTA
20302582 TTTTATTT-
1 TTTTATTTA
20302590 TTCTT-TTTA
1 TT-TTATTTA
20302599 TTTTCATTTCAA
1 TTTT-ATTT--A
20302611 TTTTA-TTA
1 TTTTATTTA
20302619 TTTTATTT
1 TTTTATTT
20302627 TGAAAGACAT
Statistics
Matches: 69, Mismatches: 2, Indels: 24
0.73 0.02 0.25
Matches are distributed among these distances:
7 4 0.06
8 17 0.25
9 16 0.23
10 17 0.25
11 4 0.06
12 11 0.16
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTATTTA
Found at i:20302555 original size:16 final size:15
Alignment explanation
Indices: 20302534--20302594 Score: 79
Period size: 16 Copynumber: 3.9 Consensus size: 15
20302524 ATCCTCCTTT
20302534 TTTTTATTTATTCTTA
1 TTTTTATTT-TTCTTA
20302550 TTTTTATTTTATCTTA
1 TTTTTATTTT-TCTTA
*
20302566 -TTTTATTTATTTTTA
1 TTTTTATTT-TTCTTA
20302581 TTTTTATTTTTCTT
1 TTTTTATTTTTCTT
20302595 TTTATTTTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
15 17 0.43
16 23 0.57
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTATTTTTCTTA
Found at i:20302556 original size:6 final size:6
Alignment explanation
Indices: 20302540--20302607 Score: 68
Period size: 6 Copynumber: 11.2 Consensus size: 6
20302530 CTTTTTTTTA
*
20302540 TTTATT CTTATT TTTA-T TTTATCT TATT-TT ATTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTAT-T T-TTATT -TTTATT TTTATT TTTATT
* *
20302589 TTTCTT TTTATT TTCATT T
1 TTTATT TTTATT TTTATT T
20302608 CAATTTTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
5 5 0.10
6 39 0.75
7 6 0.12
8 2 0.04
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:20302561 original size:5 final size:5
Alignment explanation
Indices: 20302531--20302627 Score: 60
Period size: 6 Copynumber: 18.8 Consensus size: 5
20302521 TGAATCCTCC
*
20302531 TTTT- TTTTA -TTTA TTCTTA TTTTTA TTTTA TCTTA TTTTA -TTTA TTTTTA
1 TTTTA TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA
* *
20302581 TTTTTA TTTTTCT TTTTA TTTTCA TTTCAA TTTTA --TTA TTTTA TTTT
1 -TTTTA -TTTT-A TTTTA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
20302628 GAAAGACATA
Statistics
Matches: 76, Mismatches: 6, Indels: 21
0.74 0.06 0.20
Matches are distributed among these distances:
3 3 0.04
4 12 0.16
5 26 0.34
6 33 0.43
7 2 0.03
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:20302570 original size:31 final size:28
Alignment explanation
Indices: 20302534--20302601 Score: 100
Period size: 31 Copynumber: 2.3 Consensus size: 28
20302524 ATCCTCCTTT
20302534 TTTTTATTTATTCTTATTTTTATTTTATC
1 TTTTTATTTATTCTTATTTTTATTTT-TC
*
20302563 TTATTTTATTTATTTTTATTTTTATTTTTC
1 -T-TTTTATTTATTCTTATTTTTATTTTTC
20302593 TTTTTATTT
1 TTTTTATTT
20302602 TCATTTCAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
28 8 0.22
29 1 0.03
30 3 0.08
31 24 0.67
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.79
Consensus pattern (28 bp):
TTTTTATTTATTCTTATTTTTATTTTTC
Found at i:20305528 original size:13 final size:13
Alignment explanation
Indices: 20305512--20305544 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
20305502 TTTAATTAAA
*
20305512 TTAGTTAATTAGT
1 TTAGATAATTAGT
20305525 TTAGATAATTAGT
1 TTAGATAATTAGT
20305538 TTA-ATAA
1 TTAGATAA
20305545 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:20309633 original size:40 final size:40
Alignment explanation
Indices: 20309589--20309772 Score: 282
Period size: 40 Copynumber: 4.6 Consensus size: 40
20309579 GCTACTTGCT
20309589 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
20309629 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
20309669 CAAATGCCTTCGGAACTTAGCCCGGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
20309709 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
20309748 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
20309773 CTATCATCCG
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.26
40 98 0.74
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Done.