Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 77 of 425
Found at i:21782997 original size:43 final size:43
Alignment explanation
Indices: 21782839--21783048 Score: 242
Period size: 43 Copynumber: 4.8 Consensus size: 43
21782829 TTATTCATAG
* * * *
21782839 CTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGA-TTCGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT---TAA
* * ** *
21782884 CTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACCCACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA--CTTTAA
* *
21782929 CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTAA
*
21782972 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTAA
* *
21783015 CTTCAACCTGCTTCACTGCAACTTCAGGGAGATA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
21783049 CGGTTTGTTT
Statistics
Matches: 146, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
43 76 0.52
45 70 0.48
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (43 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTAA
Found at i:21783001 original size:88 final size:86
Alignment explanation
Indices: 21782839--21783048 Score: 242
Period size: 88 Copynumber: 2.4 Consensus size: 86
21782829 TTATTCATAG
* * * * **
21782839 CTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--CTAACTTCAACCTACTCCACTGCA
*
21782904 ACTTCAGGGAGATAAGACCCACTAT
64 ACTTCAGGGAGATAAGA--CACTAA
* * *
21782929 CTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-TAACTTCAACCTGCTCCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCTAACTTCAACCTACTCCACTGCAA
**
21782993 CTTCAGGGAGATAAGACTTTAA
65 CTTCAGGGAGATAAGACACTAA
* *
21783015 CTTCAACCTGCTTCACTGCAACTTCAGGGAGATA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
21783049 CGGTTTGTTT
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
86 33 0.32
88 36 0.35
90 32 0.31
91 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (86 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCTAACTTCAACCTACTCCACTGCAAC
TTCAGGGAGATAAGACACTAA
Found at i:21783678 original size:13 final size:13
Alignment explanation
Indices: 21783660--21783685 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21783650 TGCTTGAAAA
21783660 AGGTCGTAATAAT
1 AGGTCGTAATAAT
21783673 AGGTCGTAATAAT
1 AGGTCGTAATAAT
21783686 GGAAAAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
AGGTCGTAATAAT
Found at i:21795018 original size:26 final size:26
Alignment explanation
Indices: 21794988--21795052 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
21794978 CAAAAATTAT
*
21794988 TAAAAAAAACTTAAACAAATAAATAAG
1 TAAAAAAAA-ATAAACAAATAAATAAG
*
21795015 -AAAAATAAAATAAGCAAATAAATAAG
1 TAAAAA-AAAATAAACAAATAAATAAG
*
21795041 TAAATAAAAATA
1 TAAAAAAAAATA
21795053 TAAAATATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
26 26 0.79
27 7 0.21
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (26 bp):
TAAAAAAAAATAAACAAATAAATAAG
Found at i:21795039 original size:12 final size:12
Alignment explanation
Indices: 21795003--21795048 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
21794993 AAAACTTAAA
21795003 CAAATAAATAAG
1 CAAATAAATAAG
*
21795015 AAAAATAAAATAAG
1 -CAAAT-AAATAAG
21795029 CAAATAAATAAG
1 CAAATAAATAAG
*
21795041 TAAATAAA
1 CAAATAAA
21795049 AATATAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 14 0.48
13 8 0.28
14 7 0.24
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.17
Consensus pattern (12 bp):
CAAATAAATAAG
Found at i:21795109 original size:3 final size:3
Alignment explanation
Indices: 21795103--21795129 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
21795093 AACAATAATA
21795103 ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
21795130 GTGGTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:21795140 original size:3 final size:3
Alignment explanation
Indices: 21795134--21795361 Score: 193
Period size: 3 Copynumber: 77.0 Consensus size: 3
21795124 ATGATGGTGG
* * ** *
21795134 TAA TAA TAA TAG TAA TAA TAG T-A TGC TAAA TAA TAG TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
* * * * * * *
21795178 -AA TAA TAG TAA CAG TAA TTA TAA AAA TGA TAA TAG TAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
21795224 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
21795271 GGAA TAG TAA TAA TAA CAA TAA T-A TAAA TAA TAA T-A TATA TAA -AA
1 -TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TA-A TAA TAA
* *
21795316 TAA TAA TAA TAA TAA TAA TGA TCA TAA TAA TAA TAAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
21795362 GAAAATAGTA
Statistics
Matches: 180, Mismatches: 33, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
2 15 0.08
3 154 0.86
4 11 0.06
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:21798105 original size:28 final size:28
Alignment explanation
Indices: 21798045--21798115 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 28
21798035 GTAGCAATTT
*
21798045 TTTTTTTATT-TTATAAAAATTACCTTA
1 TTTTTTTATTATTATAAAAATAACCTTA
**
21798072 AATTTTTATTAATTATAAAAATAACC-TA
1 TTTTTTTATT-ATTATAAAAATAACCTTA
21798100 TTTTTTTATTATTATA
1 TTTTTTTATTATTATA
21798116 TATATAAATG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 14 0.38
28 10 0.27
29 13 0.35
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTTTTTATTATTATAAAAATAACCTTA
Found at i:21798117 original size:29 final size:29
Alignment explanation
Indices: 21798041--21798117 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
21798031 TACTGTAGCA
* *
21798041 ATTTTTTTTTTATTTTATAAAAATTACCTT
1 ATTTTTTTATTA-TTTATAAAAATAACCTT
** *
21798071 AAATTTTTATTAATTATAAAAATAACC-T
1 ATTTTTTTATTATTTATAAAAATAACCTT
21798099 ATTTTTTTATTATTATATA
1 ATTTTTTTATTATT-TATA
21798118 TATAAATGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
28 12 0.32
29 17 0.45
30 9 0.24
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (29 bp):
ATTTTTTTATTATTTATAAAAATAACCTT
Found at i:21798647 original size:18 final size:20
Alignment explanation
Indices: 21798625--21798671 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 20
21798615 TACATAAATT
*
21798625 ATTTACATAAA-AATTAT-A
1 ATTTACATAAATAACTATCA
*
21798643 TTTTACA-AAATAACTATCA
1 ATTTACATAAATAACTATCA
21798662 ATTTACATAA
1 ATTTACATAA
21798672 TTCAAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 3 0.13
18 11 0.48
19 7 0.30
20 2 0.09
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTTACATAAATAACTATCA
Found at i:21800790 original size:16 final size:16
Alignment explanation
Indices: 21800769--21800813 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
21800759 GGAGATAATA
*
21800769 TAATTTTATTATATAT
1 TAATTTTAATATATAT
21800785 TAATTTGTAATAT-TAT
1 TAATTT-TAATATATAT
*
21800801 TACTTTTAATATA
1 TAATTTTAATATA
21800814 AAAATATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 6 0.24
16 14 0.56
17 5 0.20
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (16 bp):
TAATTTTAATATATAT
Found at i:21804030 original size:18 final size:18
Alignment explanation
Indices: 21804007--21804043 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
21803997 TAAGAATAAA
21804007 AATAACATTAAATATTTT
1 AATAACATTAAATATTTT
21804025 AATAACATTAAATATTTT
1 AATAACATTAAATATTTT
21804043 A
1 A
21804044 TATAGATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (18 bp):
AATAACATTAAATATTTT
Found at i:21809496 original size:21 final size:23
Alignment explanation
Indices: 21809460--21809501 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
21809450 AAAATGTCAA
21809460 AATATGCATAATAAGTCCATTTC
1 AATATGCATAATAAGTCCATTTC
21809483 AATATGC-T-ATAAGTCCATT
1 AATATGCATAATAAGTCCATT
21809502 CAACCAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
22 1 0.05
23 7 0.37
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (23 bp):
AATATGCATAATAAGTCCATTTC
Found at i:21812668 original size:38 final size:38
Alignment explanation
Indices: 21812595--21812704 Score: 130
Period size: 38 Copynumber: 2.8 Consensus size: 38
21812585 CTAATCTAAT
* * *
21812595 CAAAACATGCAAAACAGAAGCGAATAAGAACTGGTCCACC
1 CAAAACATGC-CAACAGAAGC-TATAAGAGCTGGTCCACC
*
21812635 CAAAACATGCCAACAGAAGCTATAAGAGTTGGTCCACC
1 CAAAACATGCCAACAGAAGCTATAAGAGCTGGTCCACC
* * *
21812673 CGAAACATGCCAATAAAAGCTCATAAGAGCTG
1 CAAAACATGCCAACAGAAGCT-ATAAGAGCTG
21812705 AACAGAAGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 33 0.54
39 18 0.30
40 10 0.16
ACGTcount: A:0.44, C:0.25, G:0.18, T:0.14
Consensus pattern (38 bp):
CAAAACATGCCAACAGAAGCTATAAGAGCTGGTCCACC
Found at i:21814313 original size:35 final size:35
Alignment explanation
Indices: 21814272--21814342 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
21814262 CAAATTGTGA
* *
21814272 GTTTATTCTTTTATCTCTTTGAAATAATTTGTTTT
1 GTTTATTCTGTTATCTCTTTGAAAGAATTTGTTTT
* *
21814307 GTTTATTCTGTTGTCTCTTTGAAAGAGTTTGTTTT
1 GTTTATTCTGTTATCTCTTTGAAAGAATTTGTTTT
21814342 G
1 G
21814343 AACTTATCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.17, C:0.08, G:0.15, T:0.59
Consensus pattern (35 bp):
GTTTATTCTGTTATCTCTTTGAAAGAATTTGTTTT
Found at i:21817200 original size:30 final size:30
Alignment explanation
Indices: 21817164--21817226 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
21817154 ACTTAACAAG
21817164 CAAATGCC-TCTAAAATAATAAAAAAAATAA
1 CAAATGCCTTC-AAAATAATAAAAAAAATAA
* *
21817194 CAAATGCCTTCAAAATAATAACAAAATTAA
1 CAAATGCCTTCAAAATAATAAAAAAAATAA
21817224 CAA
1 CAA
21817227 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.60, C:0.16, G:0.03, T:0.21
Consensus pattern (30 bp):
CAAATGCCTTCAAAATAATAAAAAAAATAA
Found at i:21820788 original size:2 final size:2
Alignment explanation
Indices: 21820781--21820817 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
21820771 ATTTTGAATG
21820781 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21820818 CAAGGAAGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:21821106 original size:42 final size:43
Alignment explanation
Indices: 21821059--21821205 Score: 147
Period size: 43 Copynumber: 3.4 Consensus size: 43
21821049 GTTACCAAGA
*
21821059 TGTGATTACATGTAAGACCATGTCTGAGACA-TTGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACAGTTGCATTGTAT
* * * * * *
21821101 TGTGATTACGTGTAAGACCATTTTTGGGACATTTTCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACAGTTGCATTG-TAT
* * * *
21821145 T-CGATTTCATGTAAGACCCTGTCTGGGACAGTGGCATTG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACAGTTGCATTGTAT
*
21821186 ATGTGATAACATGTAAGACC
1 -TGTGATTACATGTAAGACC
21821206 CTACTAGGAT
Statistics
Matches: 82, Mismatches: 19, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
41 2 0.02
42 28 0.34
43 48 0.59
44 4 0.05
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACAGTTGCATTGTAT
Found at i:21822233 original size:15 final size:15
Alignment explanation
Indices: 21822215--21822263 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
21822205 ACCGTGTGTG
21822215 ACACATGGCCTTGGT
1 ACACATGGCCTTGGT
*
21822230 ACAC--GGCCGTGTGT
1 ACACATGGCCTTG-GT
21822244 GACACATGGCCTTGGT
1 -ACACATGGCCTTGGT
21822260 ACAC
1 ACAC
21822264 GGCCGTGTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 6 0.21
14 2 0.07
15 12 0.43
16 2 0.07
17 6 0.21
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (15 bp):
ACACATGGCCTTGGT
Found at i:21822240 original size:30 final size:30
Alignment explanation
Indices: 21822206--21822273 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
21822196 TGTGGCTTGA
21822206 CCGTGTGTGACACATGGCCTTGGTACACGG
1 CCGTGTGTGACACATGGCCTTGGTACACGG
21822236 CCGTGTGTGACACATGGCCTTGGTACACGG
1 CCGTGTGTGACACATGGCCTTGGTACACGG
21822266 CCGTGTGT
1 CCGTGTGT
21822274 CCCTTGGGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.15, C:0.26, G:0.34, T:0.25
Consensus pattern (30 bp):
CCGTGTGTGACACATGGCCTTGGTACACGG
Found at i:21828859 original size:43 final size:44
Alignment explanation
Indices: 21828801--21828915 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 44
21828791 GTTACCGAGA
* * *
21828801 TGTGGTTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
*
21828844 TGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
* * * *
21828888 T-CGATTTCGTGTAAGACCTTGTGTGGGA
1 TGTGATTACGTGTAAGACCATGTCTGGGA
21828916 AAGTTTCATC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 58 0.94
44 4 0.06
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.35
Consensus pattern (44 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
Found at i:21829059 original size:33 final size:32
Alignment explanation
Indices: 21829017--21829082 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
21829007 GTCAAGTTGA
* *
21829017 GAAAGAATGTATGGATGAGTTAAGTGACTCAG
1 GAAAGAATGTATGAATGAGTTAAATGACTCAG
*
21829049 GAAAGTAATGTGTGAATGAGTTAAATGACTCAG
1 GAAAG-AATGTATGAATGAGTTAAATGACTCAG
21829082 G
1 G
21829083 TACGACGAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 5 0.17
33 25 0.83
ACGTcount: A:0.38, C:0.06, G:0.30, T:0.26
Consensus pattern (32 bp):
GAAAGAATGTATGAATGAGTTAAATGACTCAG
Found at i:21833530 original size:40 final size:40
Alignment explanation
Indices: 21833475--21833689 Score: 303
Period size: 40 Copynumber: 5.4 Consensus size: 40
21833465 GATGATAACT
* *
21833475 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
21833515 GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
21833555 GGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
21833595 GGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
21833635 GGGCTAAGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
*
21833674 -GGCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
21833690 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
38 17 0.11
39 15 0.09
40 126 0.79
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:21838642 original size:39 final size:39
Alignment explanation
Indices: 21838589--21838671 Score: 123
Period size: 39 Copynumber: 2.2 Consensus size: 39
21838579 GATCAGCTAC
* *
21838589 CAAA-TTCTCACGTCCTTTCTTATCCTTAATCTCGAGAT
1 CAAATTTCTCACGTCCTTTCCTATACTTAATCTCGAGAT
*
21838627 CAAATTTCTCACGTCCTTTCCTATATTTAATCTCGAGAT
1 CAAATTTCTCACGTCCTTTCCTATACTTAATCTCGAGAT
*
21838666 CGAATT
1 CAAATT
21838672 CTTGCAAAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 4 0.10
39 36 0.90
ACGTcount: A:0.25, C:0.27, G:0.08, T:0.40
Consensus pattern (39 bp):
CAAATTTCTCACGTCCTTTCCTATACTTAATCTCGAGAT
Found at i:21840454 original size:30 final size:30
Alignment explanation
Indices: 21840418--21840477 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
21840408 TATAGAAAAC
*
21840418 ATACATTGGTCCTTACACTTGGGTGGGATT
1 ATACATTGGTCCTTACACTTGGGAGGGATT
21840448 ATACATTGGTCCTTACACTTGGGAGGGATT
1 ATACATTGGTCCTTACACTTGGGAGGGATT
21840478 TTCTTTTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.35
Consensus pattern (30 bp):
ATACATTGGTCCTTACACTTGGGAGGGATT
Found at i:21862240 original size:58 final size:58
Alignment explanation
Indices: 21862178--21862316 Score: 206
Period size: 58 Copynumber: 2.4 Consensus size: 58
21862168 TTCTTCATTC
* * *
21862178 GATTTGGATTGAAACGCGACTTTATTCAAAAATAACTTTTGGCTTCTTCTCCACAGTT
1 GATTTGGATTGAAAGGCGACTTTATTCAAAAACAACTTTTCGCTTCTTCTCCACAGTT
* * *
21862236 GATTTGGATTGAAAGGAGACTTTGTTCAAAAACAACTTTTCGCTTCTTCTCCACATTT
1 GATTTGGATTGAAAGGCGACTTTATTCAAAAACAACTTTTCGCTTCTTCTCCACAGTT
* *
21862294 GAATTGGATTGGAAGGCGACTTT
1 GATTTGGATTGAAAGGCGACTTT
21862317 TCTTTAGAAC
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (58 bp):
GATTTGGATTGAAAGGCGACTTTATTCAAAAACAACTTTTCGCTTCTTCTCCACAGTT
Found at i:21862696 original size:21 final size:21
Alignment explanation
Indices: 21862672--21862725 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
21862662 ATCATTTTCA
*
21862672 CCATGGTGATTTTAG-TTTGAC
1 CCATGGTGACTTTAGCTTT-AC
*
21862693 CCATGGTAACTTTAGCTTTAC
1 CCATGGTGACTTTAGCTTTAC
*
21862714 ACATGGTG-CTTT
1 CCATGGTGACTTT
21862726 GTAATTGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 4 0.14
21 21 0.75
22 3 0.11
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (21 bp):
CCATGGTGACTTTAGCTTTAC
Found at i:21868001 original size:28 final size:28
Alignment explanation
Indices: 21867932--21868032 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
21867922 GACAAGATTG
* * * *
21867932 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
21867962 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
21867990 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
21868019 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
21868033 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:21875459 original size:28 final size:28
Alignment explanation
Indices: 21875390--21875490 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
21875380 GACAAGATTG
* * * *
21875390 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
21875420 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
21875448 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
21875477 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
21875491 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:21882420 original size:26 final size:26
Alignment explanation
Indices: 21882391--21882443 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21882381 TTCATGAAAA
21882391 ATCACTTAGTAAAAAGTGTTAAATAC
1 ATCACTTAGTAAAAAGTGTTAAATAC
21882417 ATCACTTAGTAAAAAGTGTTAAATAC
1 ATCACTTAGTAAAAAGTGTTAAATAC
21882443 A
1 A
21882444 CTCCAATCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.30
Consensus pattern (26 bp):
ATCACTTAGTAAAAAGTGTTAAATAC
Found at i:21884036 original size:29 final size:27
Alignment explanation
Indices: 21884002--21884104 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
21883992 TACTCGATCA
*
21884002 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
21884031 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
21884060 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
21884089 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
21884105 ATCTCATCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:21887488 original size:17 final size:17
Alignment explanation
Indices: 21887466--21887499 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
21887456 AAAGGAGAAA
21887466 ACTAAAGCAAAAACTAT
1 ACTAAAGCAAAAACTAT
21887483 ACTAAAGCAAAAACTAT
1 ACTAAAGCAAAAACTAT
21887500 CCTGAGTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.18, G:0.06, T:0.18
Consensus pattern (17 bp):
ACTAAAGCAAAAACTAT
Found at i:21890344 original size:23 final size:25
Alignment explanation
Indices: 21890309--21890369 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
21890299 TAATTCATTT
* *
21890309 AATTTAATTAAAT-AAATTATTAAA
1 AATTTAATAAAATAAAAATATTAAA
21890333 AATTT-ATAAAATAAAAATATTAAA
1 AATTTAATAAAATAAAAATATTAAA
* *
21890357 AAATAAATAAAAT
1 AATTTAATAAAAT
21890370 TAATTCAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
23 6 0.19
24 18 0.58
25 7 0.23
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (25 bp):
AATTTAATAAAATAAAAATATTAAA
Found at i:21890349 original size:16 final size:16
Alignment explanation
Indices: 21890329--21890363 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
21890319 AATAAATTAT
*
21890329 TAAAAAT-TTATAAAA
1 TAAAAATATTAAAAAA
21890344 TAAAAATATTAAAAAA
1 TAAAAATATTAAAAAA
21890360 TAAA
1 TAAA
21890364 TAAAATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAAAATATTAAAAAA
Found at i:21890624 original size:13 final size:13
Alignment explanation
Indices: 21890606--21890645 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
21890596 ATTTCCTAAT
21890606 TTTTAAAATATCA
1 TTTTAAAATATCA
21890619 TTTT-AAATAT--
1 TTTTAAAATATCA
*
21890629 TTTTAAACTATCA
1 TTTTAAAATATCA
21890642 TTTT
1 TTTT
21890646 CACGATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 4 0.17
11 5 0.22
12 6 0.26
13 8 0.35
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTTAAAATATCA
Found at i:21890653 original size:23 final size:23
Alignment explanation
Indices: 21890604--21890654 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
21890594 AGATTTCCTA
*
21890604 ATTTTTAAAATATCATTTTAAAT
1 ATTTTTAAAATATCATTTTAAAG
* * *
21890627 ATTTTTAAACTATCATTTTCACG
1 ATTTTTAAAATATCATTTTAAAG
21890650 ATTTT
1 ATTTT
21890655 ATGGTAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.35, C:0.10, G:0.02, T:0.53
Consensus pattern (23 bp):
ATTTTTAAAATATCATTTTAAAG
Found at i:21892802 original size:15 final size:15
Alignment explanation
Indices: 21892782--21892819 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
21892772 AATTTTTAAA
21892782 TAATTTTAATGTTTT
1 TAATTTTAATGTTTT
*
21892797 TAATTTTAATTTTTT
1 TAATTTTAATGTTTT
21892812 TAAATTTT
1 T-AATTTT
21892820 TTAAATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (15 bp):
TAATTTTAATGTTTT
Found at i:21892811 original size:8 final size:8
Alignment explanation
Indices: 21892756--21892823 Score: 50
Period size: 9 Copynumber: 8.1 Consensus size: 8
21892746 TCTTAAAAAT
21892756 ATTTTTATA
1 ATTTTT-TA
*
21892765 ATTTTATA
1 ATTTTTTA
*
21892773 ATTTTTAA
1 ATTTTTTA
*
21892781 ATAATTTTA
1 AT-TTTTTA
21892790 ATGTTTTTA
1 AT-TTTTTA
21892799 A--TTTTA
1 ATTTTTTA
21892805 ATTTTTTTAA
1 A-TTTTTT-A
21892815 ATTTTTTA
1 ATTTTTTA
21892823 A
1 A
21892824 ATTAATTAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
6 6 0.13
8 12 0.26
9 27 0.57
10 2 0.04
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (8 bp):
ATTTTTTA
Found at i:21894867 original size:28 final size:28
Alignment explanation
Indices: 21894820--21894879 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
21894810 TATAATATAA
21894820 TTTATAATTTAATTAAAAATTAAAATATT
1 TTTATAATTTAATTAAAAATT-AAATATT
* *
21894849 TTTATAA-TTAATTATAAATTTAATATT
1 TTTATAATTTAATTAAAAATTAAATATT
21894876 TTTA
1 TTTA
21894880 ATTAGAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 10 0.34
28 12 0.41
29 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (28 bp):
TTTATAATTTAATTAAAAATTAAATATT
Found at i:21895416 original size:14 final size:14
Alignment explanation
Indices: 21895389--21895440 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
21895379 GCTACCAAAA
*
21895389 AATTAAATATAATT
1 AATTACATATAATT
*
21895403 AATTACATAAAATT
1 AATTACATATAATT
21895417 AATTTA-A-ATAATT
1 AA-TTACATATAATT
21895430 AATTACATATA
1 AATTACATATA
21895441 GTAAAATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
12 3 0.09
13 8 0.25
14 18 0.56
15 3 0.09
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (14 bp):
AATTACATATAATT
Found at i:21899388 original size:4 final size:4
Alignment explanation
Indices: 21899381--21899406 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
21899371 CAATCCGATT
21899381 TTTG TTTG TTTG TTTG TTTG TTTG TT
1 TTTG TTTG TTTG TTTG TTTG TTTG TT
21899407 CTAAGACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTTG
Found at i:21907816 original size:18 final size:18
Alignment explanation
Indices: 21907789--21907903 Score: 56
Period size: 18 Copynumber: 6.1 Consensus size: 18
21907779 TGTGAGGATG
21907789 TTAC-ATATACTATATGA
1 TTACAATATACTATATGA
*
21907806 TTACAATATACACTATGTGA
1 TTACAATAT--ACTATATGA
* *
21907826 -TCCAAGCATACTATATGA
1 TTACAA-TATACTATATGA
* *
21907844 TAATAATATTGTACTATATGA
1 TTACAATA---TACTATATGA
* * *
21907865 TCA-AAGTATACTACATTA
1 TTACAA-TATACTATATGA
21907883 TTACAATATACATTATATGA
1 TTACAATATAC--TATATGA
21907903 T
1 T
21907904 CAACACATAC
Statistics
Matches: 72, Mismatches: 14, Indels: 21
0.67 0.13 0.20
Matches are distributed among these distances:
17 4 0.06
18 28 0.39
19 8 0.11
20 18 0.25
21 14 0.19
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (18 bp):
TTACAATATACTATATGA
Found at i:21907837 original size:38 final size:38
Alignment explanation
Indices: 21907795--21907919 Score: 126
Period size: 38 Copynumber: 3.3 Consensus size: 38
21907785 GATGTTACAT
*
21907795 ATACTATATGATTACAATATACACTATGTGATCCAAGC
1 ATACTATATGATTACAATATACACTATATGATCCAAGC
* * ** * *
21907833 ATACTATATGATAATAATATTGTACTATATGATCAAAGT
1 ATACTATATGATTACAATA-TACACTATATGATCCAAGC
* * * *
21907872 ATACTACATTATTACAATATACATTATATGAT-CAACAC
1 ATACTATATGATTACAATATACACTATATGATCCAA-GC
21907910 ATACTATATG
1 ATACTATATG
21907920 CTAAACCCTA
Statistics
Matches: 66, Mismatches: 19, Indels: 4
0.74 0.21 0.04
Matches are distributed among these distances:
37 2 0.03
38 35 0.53
39 29 0.44
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.35
Consensus pattern (38 bp):
ATACTATATGATTACAATATACACTATATGATCCAAGC
Found at i:21914515 original size:46 final size:46
Alignment explanation
Indices: 21914448--21914802 Score: 279
Period size: 46 Copynumber: 7.5 Consensus size: 46
21914438 TTTGTGTTCT
* *
21914448 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAATATGAGAGCC
* * * *
21914494 AGTGTAAGATATGTCTGGGACATGCATCAGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTC-A-ATA-TGAGAGCC
* ** * * *
21914542 AGTGTAAGACATGTCTAGGACATGCATCGGCGTTGAGACGAGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAATATGAGAGCC
* * *
21914588 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGATAGATAAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAATAT-GA-GAGCC
* * * ** * *
21914636 AGTGTAAGACCTGTCTAGGACATGGCGTCAG-CT-TGT-TGTA-TGTC
1 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCAATATG-AGAGCC
* * * * *
21914680 AGTGTAAGACCTATCTAGGACATGGCATCGACACCCATAGATGAGAGCC
1 AGTGTAAGACATGTCTAGGACAT-GCATCGGC-CTCA-ATATGAGAGCC
* *
21914729 AGTGTAAGACCTGTCTAGGACATGGCATCGGCCTCACTATATGAAAGCC
1 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCA--ATATGAGAGCC
*
21914778 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTAGGACATG
21914803 GCGTCAGCAT
Statistics
Matches: 248, Mismatches: 45, Indels: 29
0.77 0.14 0.09
Matches are distributed among these distances:
44 28 0.11
45 2 0.01
46 74 0.30
47 3 0.01
48 68 0.27
49 61 0.25
50 12 0.05
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAATATGAGAGCC
Found at i:21914595 original size:94 final size:94
Alignment explanation
Indices: 21914448--21914659 Score: 280
Period size: 94 Copynumber: 2.3 Consensus size: 94
21914438 TTTGTGTTCT
* * * * *
21914448 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCCAGTGTAAGATATGTCTGGG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACATGTCTAGG
* **
21914513 ACATGCATCAGCCTCGAGATATTTAAGCC
66 ACATGCATCAGCCTCAAGATAGATAAGCC
**** *
21914542 AGTGTAAGACATGTCTAGGACATGCATCGGCGTTGAGACGAGAGCTAGTGTAAGACATGTCTAGG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACATGTCTAGG
* *
21914607 ACATGCATCGGCCTCAAGATAGATAAGCT
66 ACATGCATCAGCCTCAAGATAGATAAGCC
*
21914636 AGTGTAAGACCTGTCTAGGACATG
1 AGTGTAAGACATGTCTAGGACATG
21914660 GCGTCAGCTT
Statistics
Matches: 102, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 102 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACATGTCTAGG
ACATGCATCAGCCTCAAGATAGATAAGCC
Found at i:21914740 original size:49 final size:49
Alignment explanation
Indices: 21914537--21914804 Score: 184
Period size: 49 Copynumber: 5.6 Consensus size: 49
21914527 CGAGATATTT
* * ** *
21914537 AAGCCAGTGTAAGACATGTCTAGGACAT-GCATCG---GCGTTGAGACGA
1 AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGACCCCACT-AGATGA
* * * * *
21914583 GAGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCA--AGATAGA
1 AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGACCCCACTAGAT-GA
* * * * * *
21914630 TAAGCTAGTGTAAGACCTGTCTAGGACATGGCGTC-A----GCTTGTTGT
1 -AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGACCCCACTAGATGA
* * *
21914675 ATGTCAGTGTAAGACCTATCTAGGACATGGCATCGACACCCA-TAGATGA
1 AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGAC-CCCACTAGATGA
* * * *
21914724 GAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGGCCTCACTATATGA
1 AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGACCCCACTAGATGA
*
21914773 AAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 AAGCCAGTGTAAGACC-TGTCTAGGACATGGC
21914805 GTCAGCATCT
Statistics
Matches: 175, Mismatches: 31, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
44 29 0.17
45 2 0.01
46 37 0.21
47 2 0.01
48 29 0.17
49 62 0.35
50 14 0.08
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (49 bp):
AAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGACCCCACTAGATGA
Found at i:21922298 original size:30 final size:30
Alignment explanation
Indices: 21922264--21922326 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
21922254 ATTTATTTTA
21922264 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
21922294 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
21922324 TTG
1 TTG
21922327 CTTCTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:21925398 original size:43 final size:43
Alignment explanation
Indices: 21925348--21925434 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 43
21925338 ATTTATGATT
* *
21925348 TCGATATGTGTTTACGA-GTAAGACCCTGTCTGGGACAG-TGGCA
1 TCGATATGTGGTTAC-ATGTAAGACCATGTCTGGGA-AGTTGGCA
21925391 TCGATATGTGGTTACATGTAAGACCATGTCTGGGAAGTTGGCA
1 TCGATATGTGGTTACATGTAAGACCATGTCTGGGAAGTTGGCA
21925434 T
1 T
21925435 TGTACGATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
42 3 0.08
43 37 0.93
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (43 bp):
TCGATATGTGGTTACATGTAAGACCATGTCTGGGAAGTTGGCA
Found at i:21929729 original size:20 final size:20
Alignment explanation
Indices: 21929704--21929760 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
21929694 AATACTATGA
*
21929704 ACCATTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
*
21929724 ACCATTCCATTTAATTACTT
1 ACCATTCCATTTACTTACTT
* *
21929744 TCCATTTCATTTACTTA
1 ACCATTCCATTTACTTA
21929761 GTATAAACTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.25, C:0.26, G:0.00, T:0.49
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:21934626 original size:27 final size:27
Alignment explanation
Indices: 21934586--21934639 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
21934576 TAATGTTAGT
21934586 CCATCCTCACGTTCATGAACCCAAGTA
1 CCATCCTCACGTTCATGAACCCAAGTA
*
21934613 CCATCCTCATGTTCATGAACCCAAGTA
1 CCATCCTCACGTTCATGAACCCAAGTA
21934640 TAACAATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.35, G:0.11, T:0.24
Consensus pattern (27 bp):
CCATCCTCACGTTCATGAACCCAAGTA
Found at i:21935094 original size:16 final size:17
Alignment explanation
Indices: 21935070--21935102 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
21935060 CACATAACAT
21935070 ATAAGCATAT-ATCACA
1 ATAAGCATATAATCACA
*
21935086 ATAATCATATAATCACA
1 ATAAGCATATAATCACA
21935103 TAACATTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.27
Consensus pattern (17 bp):
ATAAGCATATAATCACA
Found at i:21936417 original size:17 final size:18
Alignment explanation
Indices: 21936390--21936424 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
21936380 AAAAATTGGT
21936390 TTTAAAGACTAATTAAAA
1 TTTAAAGACTAATTAAAA
21936408 TTTAAA-ACTAATTAAAA
1 TTTAAAGACTAATTAAAA
21936425 GTTGAATCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (18 bp):
TTTAAAGACTAATTAAAA
Found at i:21937969 original size:15 final size:16
Alignment explanation
Indices: 21937930--21937966 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
21937920 TAAACCCATT
21937930 AGGAAGGTGAAGAGCA
1 AGGAAGGTGAAGAGCA
*
21937946 A-GAAGGTGAAGAGGA
1 AGGAAGGTGAAGAGCA
21937961 AGGAAG
1 AGGAAG
21937967 TGATAAGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.46, C:0.03, G:0.46, T:0.05
Consensus pattern (16 bp):
AGGAAGGTGAAGAGCA
Found at i:21946574 original size:17 final size:18
Alignment explanation
Indices: 21946554--21946589 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
21946544 TAATCTTGTT
21946554 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
21946571 TTAATAAATTAATATGCA
1 TTAATAAATTAATATGCA
21946589 T
1 T
21946590 ATTTTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:21950072 original size:19 final size:19
Alignment explanation
Indices: 21950044--21950087 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
21950034 CTCATTCACA
*
21950044 TCTCTTCTCTTACAATTTT
1 TCTCTCCTCTTACAATTTT
* *
21950063 TCTCTCCTCTTTCACTTTT
1 TCTCTCCTCTTACAATTTT
21950082 TCTCTC
1 TCTCTC
21950088 ATTTTCCCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.09, C:0.34, G:0.00, T:0.57
Consensus pattern (19 bp):
TCTCTCCTCTTACAATTTT
Found at i:21959752 original size:43 final size:43
Alignment explanation
Indices: 21959687--21959798 Score: 188
Period size: 43 Copynumber: 2.6 Consensus size: 43
21959677 ATTCAACGAA
*
21959687 ATCACACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGT
1 ATCACACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGT
* *
21959730 ATCGCACACTTAGTGCCAATTAATTAGCCGAGGCTATAATTGT
1 ATCACACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGT
*
21959773 ATCACACATTTAGTGCCAATTAATTA
1 ATCACACACTTAGTGCCAATTAATTA
21959799 AACCGAACTT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (43 bp):
ATCACACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGT
Found at i:21960383 original size:21 final size:21
Alignment explanation
Indices: 21960339--21960383 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
21960329 TATTTCATTT
* *
21960339 ATTTACACTTTTAACCACTCA
1 ATTTACACTTTTAACAAATCA
* *
21960360 ATTTACACTTTTCACAAATTA
1 ATTTACACTTTTAACAAATCA
21960381 ATT
1 ATT
21960384 CCTTTTATGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTTACACTTTTAACAAATCA
Found at i:21963939 original size:27 final size:27
Alignment explanation
Indices: 21963885--21963964 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
21963875 TTAGAATACT
* *
21963885 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAATTACTGAAATACCC
*
21963913 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
*
21963940 -TCGATTTGTAAAATTACTGAAATAC
1 TTAG-TTTGTAAAATTACTGAAATAC
21963965 TTTCGACTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.04
27 37 0.80
28 7 0.15
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:21963970 original size:27 final size:27
Alignment explanation
Indices: 21963894--21963983 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
21963884 TTTAGTTTAC
* *
21963894 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
21963921 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
* *
21963948 TAAAATTACTGAAATACTTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
21963975 TAAAATTAC
1 TAAAATTAC
21963984 CAAAGTACCC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 4 0.07
27 50 0.93
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:21964008 original size:27 final size:27
Alignment explanation
Indices: 21963978--21964038 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
21963968 CGACTTGTAA
21963978 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
**** * *
21964005 AATTACCGTTTTACCCCCGATTTATAT
1 AATTACCAAAGTACCCCCGATTTACAG
21964032 AATTACC
1 AATTACC
21964039 GTTTTACCCC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:21964200 original size:27 final size:27
Alignment explanation
Indices: 21963989--21964199 Score: 280
Period size: 27 Copynumber: 7.8 Consensus size: 27
21963979 ATTACCAAAG
*
21963989 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
21964016 TACCCCCGATTTATATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
21964043 TACCC-CTGATTTACATAATTATTGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
21964070 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
21964097 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
21964124 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
21964151 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
21964178 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
21964200 TAAAATACCC
Statistics
Matches: 164, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 162 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:21964208 original size:27 final size:27
Alignment explanation
Indices: 21964070--21964345 Score: 101
Period size: 27 Copynumber: 10.2 Consensus size: 27
21964060 ATTATTGTTT
* * ****
21964070 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ****
21964097 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
21964124 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * *****
21964151 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
21964178 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* ** *
21964205 TACCCT-TAGTTTGTAAAAGTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* **
21964232 TACCC-CTAGTTTTTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * *** *
21964259 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACCAAAA
** **
21964286 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
21964313 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
21964340 TACCCT
1 TACCCT
21964346 TGACTTTCTA
Statistics
Matches: 208, Mismatches: 35, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.01
27 205 0.99
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:21964340 original size:54 final size:53
Alignment explanation
Indices: 21964192--21964430 Score: 205
Period size: 54 Copynumber: 4.4 Consensus size: 53
21964182 CTCGATTTAC
* * * * *
21964192 AAAATTACTAAAATACCCTTAGTTTGTA-AAAGTACCA-AAATACCCCTAGTTTTT
1 AAAATTACCAAAATACCCTT-GGTT-TACAAATTA-CAGAAATACCCTTAGTTTGT
** * *
21964246 AAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTTGGTTT-ACAAATTACAGAAATACCCTTAGTTTGT
* * * *
21964300 AAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCCTTGGTTTACAAA-TTACAGAAATACCCTT-AGTTTGT
* * *
21964355 AAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTAGTTTGT
1 -AAAATTACCA-AAATACCCTTGGTTTAC-AAATTACAGAAATACCCTTAGTTTGT
* * *
21964410 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
21964431 TAGGATGAAA
Statistics
Matches: 149, Mismatches: 27, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
52 1 0.01
53 7 0.05
54 90 0.60
55 12 0.08
56 36 0.24
57 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTTGGTTTACAAATTACAGAAATACCCTTAGTTTGT
Found at i:21964341 original size:81 final size:81
Alignment explanation
Indices: 21964193--21964347 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
21964183 TCGATTTACA
* * *
21964193 AAATTACTAAAATACCCTTAGTTTGTAAAAGTACCAAAATACCCCTAGTTTTTAAAATTACCAAA
1 AAATTACCAAAATACCCTTAATTTGTAAAAGTACCAAAATACCCCTAGTATTTAAAATTACCAAA
21964258 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
* *
21964274 AAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCT-G-ATTTACAAAGTTA-CA
1 AAATTACCAAAATACCCTTAATTTGTAAAAGTACCAAAATACCCCTAGTATTTA-AAA-TTACCA
21964336 GAAATACCCTTG
64 -AAATACCCTTG
21964348 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 4 0.06
80 6 0.09
81 56 0.85
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTAATTTGTAAAAGTACCAAAATACCCCTAGTATTTAAAATTACCAAA
ATACCCTTGGTTTGTG
Found at i:21964407 original size:27 final size:27
Alignment explanation
Indices: 21964187--21964407 Score: 153
Period size: 27 Copynumber: 8.1 Consensus size: 27
21964177 TTACCCTCGA
*
21964187 TTTACAAAATTACTAAAATACCCTTAG
1 TTTACAAAATTACCAAAATACCCTTAG
** * *
21964214 TTTGTAAAAGTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCTTAG
** *
21964241 TTTTTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTAG
*** * *
21964268 TTTGTGAAATTACCGAAATACCCTTAA
1 TTTACAAAATTACCAAAATACCCTTAG
** *
21964295 TTTGTAAAATTACCAAAATACCCCT-G
1 TTTACAAAATTACCAAAATACCCTTAG
* *
21964321 ATTTACAAAGTTA-CAGAAATACCCTTGAC
1 -TTTACAAAATTACCA-AAATACCCTT-AG
* * *
21964350 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACCA-AAATACCCTTAG
**
21964378 TTTACAAAATTACTGAAATACCCTTAG
1 TTTACAAAATTACCAAAATACCCTTAG
21964405 TTT
1 TTT
21964408 GTAGATTTAC
Statistics
Matches: 155, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
26 2 0.01
27 128 0.83
28 7 0.05
29 18 0.12
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTAG
Found at i:21964525 original size:27 final size:27
Alignment explanation
Indices: 21964448--21964525 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
21964438 AAATGACTAA
* *
21964448 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
21964475 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
21964502 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
21964526 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:21965713 original size:25 final size:24
Alignment explanation
Indices: 21965680--21965727 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
21965670 TTATAACATG
* * *
21965680 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
21965704 AAAAGTGACCATTATACCCCTAGG
1 AAAA-TGACCATTATACCCCTAGG
21965728 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:21965778 original size:9 final size:9
Alignment explanation
Indices: 21965766--21965842 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
21965756 TTTGATAAAC
21965766 ATGATATGT
1 ATGATATGT
*
21965775 ATGATATGCAC
1 ATGATATG--T
21965786 ATGATATGT
1 ATGATATGT
*
21965795 ATGATATGCAC
1 ATGATATG--T
*
21965806 ATGACATGT
1 ATGATATGT
*
21965815 ATGATATGCAC
1 ATGATATG--T
21965826 ATGATATGT
1 ATGATATGT
21965835 ATGATATG
1 ATGATATG
21965843 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:21965791 original size:11 final size:11
Alignment explanation
Indices: 21965775--21965846 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
21965765 CATGATATGT
21965775 ATGATATGCAC
1 ATGATATGCAC
*
21965786 ATGATATG--T
1 ATGATATGCAC
21965795 ATGATATGCAC
1 ATGATATGCAC
* *
21965806 ATGACATG--T
1 ATGATATGCAC
21965815 ATGATATGCAC
1 ATGATATGCAC
*
21965826 ATGATATG--T
1 ATGATATGCAC
21965835 ATGATATGCAC
1 ATGATATGCAC
21965846 A
1 A
21965847 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:21965854 original size:20 final size:20
Alignment explanation
Indices: 21965764--21965846 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
21965754 ATTTTGATAA
21965764 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
21965784 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
21965804 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
21965824 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
21965844 ACA
1 ACA
21965847 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:21965956 original size:24 final size:24
Alignment explanation
Indices: 21965900--21966065 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
21965890 GAGGAAGTGA
21965900 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
21965923 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
21965947 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
21965971 AAAAGGGCTTACGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
21965995 AAAA-GGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
21966018 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
21966042 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
21966066 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
23 43 0.33
24 75 0.58
25 11 0.09
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:21965969 original size:47 final size:48
Alignment explanation
Indices: 21965900--21966066 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
21965890 GAGGAAGTGA
* *
21965900 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
* *
21965947 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
*
21965995 AAAA-GGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
*
21966042 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
21966067 TGATAAAGCA
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 67 0.61
48 30 0.28
49 12 0.11
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
Found at i:21966016 original size:71 final size:71
Alignment explanation
Indices: 21965900--21966065 Score: 253
Period size: 71 Copynumber: 2.3 Consensus size: 71
21965890 GAGGAAGTGA
* * *
21965900 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
21965965 GTTATC
66 GTTATC
*
21965971 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
21966036 GTTATT
66 GTTATC
*
21966042 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
21966066 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.87
72 11 0.13
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:21966294 original size:31 final size:31
Alignment explanation
Indices: 21966259--21966322 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
21966249 CGTGTACCGT
* *
21966259 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
**
21966290 AAAGGCTTCGGCCCAATGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
21966321 AA
1 AA
21966323 TATGAGAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:21974706 original size:39 final size:39
Alignment explanation
Indices: 21974624--21974773 Score: 264
Period size: 39 Copynumber: 3.8 Consensus size: 39
21974614 TATGGTAGCC
* *
21974624 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
21974664 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
21974703 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
21974742 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
21974774 TACCCGAACA
Statistics
Matches: 106, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:21982577 original size:39 final size:39
Alignment explanation
Indices: 21982508--21982654 Score: 249
Period size: 39 Copynumber: 3.7 Consensus size: 39
21982498 GGTAGCCCGA
* *
21982508 ACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGC
1 ACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGC
*
21982548 ACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGT
1 ACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGC
*
21982587 ACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCAC
1 ACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGC
21982626 ACAATTGCCTTCGGGCTTAGCCCGGATAT
1 ACAATTGCCTTCGGGCTTAGCCCGGATAT
21982655 TACCCGAACA
Statistics
Matches: 102, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 88 0.86
40 14 0.14
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
ACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGC
Found at i:21985581 original size:40 final size:40
Alignment explanation
Indices: 21985526--21985605 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
21985516 AATAAAGTAA
21985526 AGATCCCCCTTTTTATTTATTTGCAAATCCCTCAAAATCT
1 AGATCCCCCTTTTTATTTATTTGCAAATCCCTCAAAATCT
21985566 AGATCCCCCTTTTTATTTATTTGCAAATCCCTCAAAATCT
1 AGATCCCCCTTTTTATTTATTTGCAAATCCCTCAAAATCT
21985606 GACTCATCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.28, G:0.05, T:0.40
Consensus pattern (40 bp):
AGATCCCCCTTTTTATTTATTTGCAAATCCCTCAAAATCT
Found at i:21988282 original size:52 final size:52
Alignment explanation
Indices: 21988224--21988328 Score: 192
Period size: 52 Copynumber: 2.0 Consensus size: 52
21988214 ATTGTTATGG
*
21988224 CCATTTTTATAGCTCATGATTCATCACAATTCAATAGGCCATTATTTATGTC
1 CCATTTTTATAGCTCATGATTCATCACAATTCAATAGGCCATTATTTACGTC
*
21988276 CCATTTTTATAGTTCATGATTCATCACAATTCAATAGGCCATTATTTACGTC
1 CCATTTTTATAGCTCATGATTCATCACAATTCAATAGGCCATTATTTACGTC
21988328 C
1 C
21988329 ATCATTCTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.40
Consensus pattern (52 bp):
CCATTTTTATAGCTCATGATTCATCACAATTCAATAGGCCATTATTTACGTC
Found at i:21988312 original size:25 final size:25
Alignment explanation
Indices: 21988232--21988312 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
21988222 GGCCATTTTT
21988232 ATAGCTCATGATTCATCACAATTCA
1 ATAGCTCATGATTCATCACAATTCA
* * * * **
21988257 ATAGGC-CATTATTTATGTCCCATTTTT
1 ATA-GCTCATGATTCA--TCACAATTCA
*
21988284 ATAGTTCATGATTCATCACAATTCA
1 ATAGCTCATGATTCATCACAATTCA
21988309 ATAG
1 ATAG
21988313 GCCATTATTT
Statistics
Matches: 39, Mismatches: 13, Indels: 8
0.65 0.22 0.13
Matches are distributed among these distances:
25 20 0.51
26 3 0.08
27 16 0.41
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (25 bp):
ATAGCTCATGATTCATCACAATTCA
Found at i:21996932 original size:42 final size:42
Alignment explanation
Indices: 21996867--21996999 Score: 142
Period size: 42 Copynumber: 3.2 Consensus size: 42
21996857 TATGGCATCA
* * * *
21996867 GCATCGATATGTA-ATTTCATGTAAGACCATATTTGGGATATG
1 GCATCGATATG-AGATATCGTGTAAGACCATGTTTGGGACATG
** * * * * *
21996909 GTGTTGATATGAGATTTTGTGTAAGACCATGTCTGGAACATG
1 GCATCGATATGAGATATCGTGTAAGACCATGTTTGGGACATG
*
21996951 GCATCGATATGAGGTATCGTGTAAGACCATGTTTGGGACATG
1 GCATCGATATGAGATATCGTGTAAGACCATGTTTGGGACATG
21996993 GCATCGA
1 GCATCGA
21997000 CACCAACATG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
41 1 0.01
42 72 0.99
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (42 bp):
GCATCGATATGAGATATCGTGTAAGACCATGTTTGGGACATG
Found at i:21997249 original size:30 final size:30
Alignment explanation
Indices: 21997213--21997269 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
21997203 AGTATGTACC
21997213 TAAACCTCATGAGTATTGGACTCGATTACA
1 TAAACCTCATGAGTATTGGACTCGATTACA
21997243 TAAACCTCATGAGTATTGGACTCGATT
1 TAAACCTCATGAGTATTGGACTCGATT
21997270 CAGGTTAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (30 bp):
TAAACCTCATGAGTATTGGACTCGATTACA
Found at i:22007572 original size:48 final size:49
Alignment explanation
Indices: 22007483--22007604 Score: 133
Period size: 48 Copynumber: 2.5 Consensus size: 49
22007473 AGATAAGAGC
* * * * * *
22007483 CAGTGTAGGACCATGTCTGGGACATGGCATCGGTGTTGATATGTG-TGA
1 CAGTGTAAGACCATATCTGGGATATGACATCGATGTCGATATGTGATGA
**
22007531 CAGTGTAAGACCATATCTGGGATATGACATC-ATCGTCGATATGTGATTT
1 CAGTGTAAGACCATATCTGGGATATGACATCGAT-GTCGATATGTGATGA
*
22007580 CA-TGTAAGACCATATCTAGGATATG
1 CAGTGTAAGACCATATCTGGGATATG
22007605 GCGTATATGA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
47 1 0.02
48 59 0.94
49 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (49 bp):
CAGTGTAAGACCATATCTGGGATATGACATCGATGTCGATATGTGATGA
Found at i:22007841 original size:21 final size:22
Alignment explanation
Indices: 22007815--22007855 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22007805 ATTCAAGATT
22007815 ATGATTAAGAA-GTAGGGTAGA
1 ATGATTAAGAATGTAGGGTAGA
*
22007836 ATGATTAAGAATGTATGGTA
1 ATGATTAAGAATGTAGGGTA
22007856 CAGATATGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (22 bp):
ATGATTAAGAATGTAGGGTAGA
Found at i:22018369 original size:40 final size:40
Alignment explanation
Indices: 22018346--22018528 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
22018336 TACTTGCTCG
* * *
22018346 AATGCCTTCGGGACATAGCCCGGATGTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCA
22018386 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCA
* * **
22018426 AATGCCTTCGGGACTTAACCTGGATATAGTAACTCGCATA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCA
* *
22018466 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCGCA
22018506 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
22018529 TTATCATCCG
Statistics
Matches: 129, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.01
40 128 0.99
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCA
Found at i:22020253 original size:41 final size:41
Alignment explanation
Indices: 22020208--22020325 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
22020198 TGAAAGATAA
22020208 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
22020249 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
22020279 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
22020320 ATGTAG
1 ATGTAG
22020326 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:22020264 original size:71 final size:71
Alignment explanation
Indices: 22020176--22020339 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
22020166 GAGATGTATC
22020176 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
22020241 AGGACA
66 AGGACA
22020247 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
22020312 AGGACA
66 AGGACA
22020318 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
22020340 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:22027072 original size:41 final size:41
Alignment explanation
Indices: 22027027--22027144 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
22027017 TGAAAGATAA
22027027 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
22027068 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
22027098 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
22027139 ATGTAG
1 ATGTAG
22027145 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:22027083 original size:71 final size:71
Alignment explanation
Indices: 22026995--22027158 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
22026985 GAGATGTATC
22026995 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
22027060 AGGACA
66 AGGACA
22027066 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
22027131 AGGACA
66 AGGACA
22027137 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
22027159 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:22033255 original size:46 final size:46
Alignment explanation
Indices: 22033198--22033373 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
22033188 TATTTGGGCA
*
22033198 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
22033244 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
22033291 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
22033337 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22033374 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.58
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:22033353 original size:93 final size:93
Alignment explanation
Indices: 22033194--22033366 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
22033184 AGGATATTTG
* * *
22033194 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCAAACTCGTTGAG
22033259 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
22033287 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCAAACTCGTTGAG
*
22033352 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
22033367 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:22035240 original size:26 final size:27
Alignment explanation
Indices: 22035174--22035240 Score: 111
Period size: 26 Copynumber: 2.6 Consensus size: 27
22035164 CTTTTTTGGG
22035174 GGGGTTAGG-TTTTTCTTTTTATTTTT
1 GGGGTTAGGTTTTTTCTTTTTATTTTT
*
22035200 TGGGTTAGGTTTTTTCTTTTT-TTTTT
1 GGGGTTAGGTTTTTTCTTTTTATTTTT
22035226 GGGGTTAGGTTTTTT
1 GGGGTTAGGTTTTTT
22035241 TGGGGGAGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 27 0.71
27 11 0.29
ACGTcount: A:0.06, C:0.03, G:0.25, T:0.66
Consensus pattern (27 bp):
GGGGTTAGGTTTTTTCTTTTTATTTTT
Found at i:22036238 original size:72 final size:72
Alignment explanation
Indices: 22036095--22036719 Score: 903
Period size: 72 Copynumber: 8.6 Consensus size: 72
22036085 CATGTGTGAT
* *
22036095 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAATTACCTC
22036160 AGCGTGT-
65 AGCGTGTC
22036167 CTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTC
1 CT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTC
22036232 AGCGTGTC
65 AGCGTGTC
* * * *
22036240 CAGAGGCTCAA-TCACCTTTCGCAATATGAGTTGATTTTTTTTGAAAAACAAAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTG-AAAACAGAAATTGAAATTAC
*
22036304 CTCAGCATGTC
62 CTCAGCGTGTC
* ** *
22036315 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
*
22036380 ACGTGTC
66 GCGTGTC
** *
22036387 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-AACAGAAATTGAAATTACC
22036452 TCAGCGTGTC
63 TCAGCGTGTC
* * *
22036462 CTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAGAAATTGAAATTACCT
*
22036527 CAACGTGTC
64 CAGCGTGTC
* ** *
22036536 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
*
22036601 ACGTGTC
66 GCGTGTC
*
22036608 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
22036673 GCGTGTC
66 GCGTGTC
*
22036680 CTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
22036720 TTTTGAAACA
Statistics
Matches: 499, Mismatches: 43, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
71 22 0.04
72 237 0.47
73 47 0.09
74 76 0.15
75 97 0.19
76 20 0.04
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (72 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
GCGTGTC
Found at i:22036371 original size:147 final size:148
Alignment explanation
Indices: 22036095--22036734 Score: 901
Period size: 147 Copynumber: 4.4 Consensus size: 148
22036085 CATGTGTGAT
* * *
22036095 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTG-AAAATAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAATTAC
*
22036157 CTCAGCGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG
66 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG
*
22036222 AAATTACCTCAGCGTGTC
131 AAATTACCTCAACGTGTC
* * *
22036240 CAGAGGCTCAA-TCACCTTTCGCAATATGAGTTGATTTTTTTTGAAAAACAAAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAATTAC
* ** ** *
22036304 CTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTG
66 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG
22036369 AAATTACCTCAACGTGTC
131 AAATTACCTCAACGTGTC
* *
22036387 CTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGATTTTTTTT-AACAACAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTT-TCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAATTA
* * *
22036450 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAA
65 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAGAAA
*
22036515 TTGAAAATACCTCAACGTGTC
128 TTGAAATTACCTCAACGTGTC
* * *
22036536 TTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA---ATTTTG-AAAACAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTT-TCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAATTA
*
22036596 CCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT
65 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT
*
22036661 GAAATTACCTCAGCGTGTC
130 GAAATTACCTCAACGTGTC
* *
22036680 CTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTTTG--AAACAGAAAT
1 CTGAGGCTCAACTCACCTTTCGCAATATGAGTTGA-TTTTTTTTGAAAAACAGAAAT
22036735 AAAAACATCA
Statistics
Matches: 443, Mismatches: 39, Indels: 24
0.88 0.08 0.05
Matches are distributed among these distances:
144 76 0.17
145 19 0.04
146 73 0.16
147 175 0.40
148 40 0.09
149 60 0.14
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (148 bp):
CTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAATTAC
CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTG
AAATTACCTCAACGTGTC
Found at i:22036724 original size:221 final size:220
Alignment explanation
Indices: 22036100--22036727 Score: 1046
Period size: 221 Copynumber: 2.8 Consensus size: 220
22036090 GTGATCTGAA
** * * *
22036100 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAACGT
*
22036165 GTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
65 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACC
* * *
22036230 TCAGCGTGTCCAGAGGCTCAA-TCACCTTTCGCAATATGAGTTGATTTTTTTTGAAAAACAAAAA
130 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTTGAAAAACAAAAA
*
22036294 TTGAAAATACCTCAGCATGTCTTGAG
195 TTGAAAATACCTCAACATGTCTTGAG
22036320 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
* ** *
22036385 TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTA
66 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-AACAGAAATTGAAATTA
*
22036450 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGA--TTTTTTGAAAGACAAA
128 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTTGAAAAACAAA
*
22036513 AATTGAAAATACCTCAACGTGTCTTGAG
193 AATTGAAAATACCTCAACATGTCTTGAG
22036541 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
22036606 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCT
66 TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCT
22036671 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTTTGAAA
131 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGA-TTTTTTTTGAAA
22036728 CAGAAATAAA
Statistics
Matches: 381, Mismatches: 20, Indels: 13
0.92 0.05 0.03
Matches are distributed among these distances:
218 64 0.17
219 72 0.19
220 28 0.07
221 157 0.41
222 39 0.10
223 21 0.06
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (220 bp):
GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCT
CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTTGAAAAACAAAAAT
TGAAAATACCTCAACATGTCTTGAG
Found at i:22045030 original size:12 final size:12
Alignment explanation
Indices: 22045013--22045043 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
22045003 TATGCAATGT
22045013 ATGAATGAATCC
1 ATGAATGAATCC
*
22045025 ATGAATGAATGC
1 ATGAATGAATCC
22045037 ATGAATG
1 ATGAATG
22045044 TCAAATGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.26
Consensus pattern (12 bp):
ATGAATGAATCC
Found at i:22048103 original size:79 final size:80
Alignment explanation
Indices: 22047904--22048122 Score: 313
Period size: 79 Copynumber: 2.8 Consensus size: 80
22047894 ATTCGGATTG
22047904 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCA
*
22047968 TTTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * * *
22047983 ATAACC-GGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCA
22048047 ATTGTGCG-GTTACT
66 ATTGTGCGAGTTACT
* ** *
22048061 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGA-AAAGCTATATCC-AGCTAAGCCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGAGCTAAGTCCCGAAGG
22048123 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 33 0.27
79 91 0.73
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:22048119 original size:118 final size:118
Alignment explanation
Indices: 22047904--22048122 Score: 316
Period size: 118 Copynumber: 1.9 Consensus size: 118
22047894 ATTCGGATTG
* *
22047904 ATAACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCAT
* ** * *
22047969 TTGTGCGAGTTACTATAACCGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
66 TTGAGCGAGAAACTATAACCAGCCAAGCCCCGAAGGCAATTGTGCGAGTTACT
*
22048022 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCG-GTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCA
* *
22048086 TTTGAGCGA-AAAGCTATATCCAGCTAAGCCCCGAAGG
65 TTTGAGCGAGAAA-CTATAACCAGCCAAGCCCCGAAGG
22048123 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
117 1 0.01
118 71 0.80
119 17 0.19
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (118 bp):
ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGAGCTAAGTCCCGAAGGCAT
TTGAGCGAGAAACTATAACCAGCCAAGCCCCGAAGGCAATTGTGCGAGTTACT
Found at i:22048122 original size:39 final size:40
Alignment explanation
Indices: 22047904--22048094 Score: 307
Period size: 39 Copynumber: 4.8 Consensus size: 40
22047894 ATTCGGATTG
22047904 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
22047943 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
22047983 ATAACC-GGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
22048022 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCG-GTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
22048061 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGA
22048095 AAAGCTATAT
Statistics
Matches: 140, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 85 0.61
40 55 0.39
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:22055861 original size:40 final size:40
Alignment explanation
Indices: 22055660--22055853 Score: 318
Period size: 40 Copynumber: 4.9 Consensus size: 40
22055650 ATTCGGATTG
22055660 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
22055699 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
22055739 ATAACCGGGCCAAGTCCTGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
22055779 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
22055819 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
22055854 AAGCTATATC
Statistics
Matches: 143, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.09
40 130 0.91
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:22055861 original size:80 final size:80
Alignment explanation
Indices: 22055660--22055880 Score: 322
Period size: 80 Copynumber: 2.8 Consensus size: 80
22055650 ATTCGGATTG
22055660 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* *
22055724 TTTGTGTGAGTTACT
66 ATTGTGCGAGTTACT
* * * *
22055739 ATAACCGGGCCAAGTCCTGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
22055804 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * **
22055819 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCTATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
22055881 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
79 28 0.22
80 98 0.78
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:22057780 original size:38 final size:39
Alignment explanation
Indices: 22057684--22057780 Score: 101
Period size: 38 Copynumber: 2.5 Consensus size: 39
22057674 TATGATATTT
* * * *
22057684 AATATATATAT-ATATATATGTATATAATAGTATTTAAG
1 AATATATATATAATATATATATATATAATAGGAATTAAA
* * *
22057722 AATATATACATAAGAAATATATA-ACTAAT-GGAATTAAA
1 AATATATATATAATATATATATATA-TAATAGGAATTAAA
22057760 AATATATATATAATATATATA
1 AATATATATATAATATATATA
22057781 AAATACCTAA
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
38 35 0.74
39 12 0.26
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (39 bp):
AATATATATATAATATATATATATATAATAGGAATTAAA
Found at i:22058310 original size:26 final size:27
Alignment explanation
Indices: 22058275--22058333 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
22058265 GTTTCTTGGC
22058275 TTTTTTGGGGGGTTA-GATTTTTCTTT
1 TTTTTTGGGGGGTTAGGATTTTTCTTT
*
22058301 TTTTTTGGGGGGTTAGGTTTTTTCTTT
1 TTTTTTGGGGGGTTAGGATTTTTCTTT
22058328 TTTTTT
1 TTTTTT
22058334 TTGGGTTAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 15 0.48
27 16 0.52
ACGTcount: A:0.05, C:0.03, G:0.25, T:0.66
Consensus pattern (27 bp):
TTTTTTGGGGGGTTAGGATTTTTCTTT
Found at i:22058350 original size:27 final size:27
Alignment explanation
Indices: 22058275--22058349 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
22058265 GTTTCTTGGC
*
22058275 TTTTTTGGGGGGTTA-GATTTTTCTTT
1 TTTTTTGGGGGGTTAGGTTTTTTCTTT
22058301 TTTTTTGGGGGGTTAGGTTTTTTCTTT
1 TTTTTTGGGGGGTTAGGTTTTTTCTTT
**
22058328 TTTTTT-TTGGGTTAGGTTTTTT
1 TTTTTTGGGGGGTTAGGTTTTTT
22058350 TTGGGGGGAG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 29 0.64
27 16 0.36
ACGTcount: A:0.05, C:0.03, G:0.27, T:0.65
Consensus pattern (27 bp):
TTTTTTGGGGGGTTAGGTTTTTTCTTT
Found at i:22065155 original size:40 final size:39
Alignment explanation
Indices: 22065032--22065155 Score: 185
Period size: 39 Copynumber: 3.2 Consensus size: 39
22065022 TGTGTATGAA
*
22065032 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
22065071 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * * *
22065110 TGTGCGAGTTGTGATACCCGGGTTAAGTCGCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
22065150 TGTGCG
1 TGTGCG
22065156 GGTTACCATA
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 62 0.79
40 16 0.21
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:22065171 original size:40 final size:40
Alignment explanation
Indices: 22065049--22065191 Score: 119
Period size: 39 Copynumber: 3.6 Consensus size: 40
22065039 ATTGTGATAT
** * *** *
22065049 CCGGGCTAAG-CCCGAAGGCAAATGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
22065088 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * *
22065127 CCGGGTTAAGTCGCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
22065167 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
22065192 AATGAGTAGC
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 45 0.51
40 43 0.49
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:22065897 original size:42 final size:42
Alignment explanation
Indices: 22065850--22065956 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
22065840 TATTGGTCTC
22065850 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
22065892 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGTTT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
22065934 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
22065957 ATTTGTACAG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:22066022 original size:27 final size:28
Alignment explanation
Indices: 22065965--22066034 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
22065955 AAATTTGTAC
**
22065965 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
22065993 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
22066020 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22066035 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:22068304 original size:39 final size:37
Alignment explanation
Indices: 22068261--22068337 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 37
22068251 TGGTTTCCTA
*
22068261 AATTCTTCATTCTTGC-TGCTTGGCTTTGGATTAGTTCAT
1 AATTCTTCATTCTT-CATGCTT-GCTTT-CATTAGTTCAT
*
22068300 AATTCTTCATTCTTCATTCTTGCTTTCATTAGTTCAT
1 AATTCTTCATTCTTCATGCTTGCTTTCATTAGTTCAT
22068337 A
1 A
22068338 CTTTGGTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 11 0.31
38 6 0.17
39 18 0.51
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.51
Consensus pattern (37 bp):
AATTCTTCATTCTTCATGCTTGCTTTCATTAGTTCAT
Found at i:22074799 original size:40 final size:39
Alignment explanation
Indices: 22074754--22074961 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
22074744 CGGAATACAA
*
22074754 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
22074794 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
22074834 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
22074874 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
22074914 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
22074954 CCGGATAT
1 CCGGATAT
22074962 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22074901 original size:80 final size:81
Alignment explanation
Indices: 22074754--22074959 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
22074744 CGGAATACAA
* * * *
22074754 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
22074818 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
22074834 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
22074897 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
22074914 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
22074960 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:22082785 original size:40 final size:39
Alignment explanation
Indices: 22082740--22082947 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
22082730 CGGAATACAA
*
22082740 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
22082780 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
22082820 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
22082860 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
22082900 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
22082940 CCGGATAT
1 CCGGATAT
22082948 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22082887 original size:80 final size:81
Alignment explanation
Indices: 22082740--22082945 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
22082730 CGGAATACAA
* * * *
22082740 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
22082804 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
22082820 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
22082883 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
22082900 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
22082946 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:22091258 original size:40 final size:40
Alignment explanation
Indices: 22091213--22091379 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
22091203 CGGAATATAA
22091213 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
22091253 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
22091293 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
22091333 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
22091372 CCGGATAT
1 CCGGATAT
22091380 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:22098519 original size:40 final size:39
Alignment explanation
Indices: 22098427--22098574 Score: 169
Period size: 38 Copynumber: 3.8 Consensus size: 39
22098417 AAATTGAATG
* * * *
22098427 ATATCCGGGCTAAG-CCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGT
*
22098465 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAG-T
* *
22098505 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGT
*
22098544 -TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
22098575 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
38 40 0.42
39 23 0.24
40 33 0.34
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGT
Found at i:22098557 original size:38 final size:39
Alignment explanation
Indices: 22098464--22098576 Score: 158
Period size: 40 Copynumber: 2.9 Consensus size: 39
22098454 ATGCTGAAAT
* *
22098464 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAGC
*
22098504 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG-
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAGC
22098543 T-TATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAA
22098577 ATCGTGATAT
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
38 30 0.44
39 6 0.09
40 32 0.47
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGC
Found at i:22101688 original size:39 final size:40
Alignment explanation
Indices: 22101630--22101730 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
22101620 AAATTGAATG
* *
22101630 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
22101669 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
22101709 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
22101731 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:22101723 original size:40 final size:40
Alignment explanation
Indices: 22101630--22101811 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
22101620 AAATTGAATG
* * * * *
22101630 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
22101669 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
22101709 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
22101749 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
22101789 ATATCCGGG-TAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22101812 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 44 0.36
40 75 0.62
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:22109819 original size:40 final size:39
Alignment explanation
Indices: 22109651--22109821 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
22109641 AGAAATTGAA
* *
22109651 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
22109691 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
22109731 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
22109771 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
22109811 TGATATCCGGG
1 TGATATCCGGG
22109822 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:22112988 original size:40 final size:39
Alignment explanation
Indices: 22112943--22113073 Score: 165
Period size: 40 Copynumber: 3.3 Consensus size: 39
22112933 CGGAATATAA
22112943 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
22112983 CCGGATAGAATAACT-CACACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACA--AATGCCTTCGGGTCTTAGC
** * *
22113023 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
22113063 CCGGATATAAT
1 CCGGATATAAT
22113074 TTCCAGCATA
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
38 4 0.05
39 1 0.01
40 68 0.88
42 4 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22113093 original size:80 final size:79
Alignment explanation
Indices: 22112959--22113109 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
22112949 ATAATCACGT
*
22112959 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCACACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCACACGAATGCCTTCGGG-CTTAGCC
22113024 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
22113039 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATCGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCA-CACGAAT-GCCTTCGGGCTTAGC
22113102 CCGGATAT
64 CCGGATAT
22113110 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 19 0.31
80 43 0.69
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCACACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Done.