Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 78 of 425
Found at i:22119840 original size:21 final size:21
Alignment explanation
Indices: 22119816--22119868 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
22119806 ACTGTTTTCG
*
22119816 GTGTCATGACACACAAAGTCT
1 GTGTCACGACACACAAAGTCT
** *
22119837 GTGTTGCGACACACGAAGTCT
1 GTGTCACGACACACAAAGTCT
*
22119858 ATGTCACGACA
1 GTGTCACGACA
22119869 TCGAGTCAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (21 bp):
GTGTCACGACACACAAAGTCT
Found at i:22124588 original size:27 final size:26
Alignment explanation
Indices: 22124540--22124599 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
22124530 ACGAGGCTGC
*
22124540 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
22124567 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
22124593 CAGATAT
1 CAGATAT
22124600 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:22124612 original size:33 final size:32
Alignment explanation
Indices: 22124561--22124624 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
22124551 ACGAAGTCAC
* *
22124561 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
22124593 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
22124625 TTGCAGTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:22124688 original size:27 final size:26
Alignment explanation
Indices: 22124640--22124691 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
22124630 GTGAGGCTGC
*
22124640 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
22124666 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
22124692 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:22131208 original size:49 final size:49
Alignment explanation
Indices: 22131149--22131373 Score: 306
Period size: 49 Copynumber: 4.5 Consensus size: 49
22131139 CTGGTATGCA
* * *
22131149 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
22131198 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
22131247 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
22131297 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
22131348 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
22131374 TGCGACCTCA
Statistics
Matches: 156, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 78 0.50
50 42 0.27
51 35 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:22131319 original size:99 final size:100
Alignment explanation
Indices: 22131147--22131380 Score: 330
Period size: 99 Copynumber: 2.4 Consensus size: 100
22131137 ATCTGGTATG
* * ** *
22131147 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTGCACT
22131212 TAGTACTACACACGTGA-C-CAATTATTC-GGTACA
66 TAGTACTACACACGTGATCACAATT-TTCGGGTACA
* * *
22131245 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTAGTAGCCTGCAC
* *
22131310 TTAGTACTACACACGTGATCACAGTTTTCGGGTACG
65 TTAGTACTACACACGTGATCACAATTTTCGGGTACA
*
22131346 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
22131381 TCACAATAGA
Statistics
Matches: 119, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
98 31 0.26
99 43 0.36
100 4 0.03
101 41 0.34
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTGCACT
TAGTACTACACACGTGATCACAATTTTCGGGTACA
Found at i:22135030 original size:31 final size:32
Alignment explanation
Indices: 22134973--22135034 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
22134963 ACGAAGTCAC
* *
22134973 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
22135005 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
22135035 TTGCAGTGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:22135098 original size:27 final size:26
Alignment explanation
Indices: 22135050--22135101 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
22135040 GTGAGGCTGC
*
22135050 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
22135076 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
22135102 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:22137936 original size:68 final size:66
Alignment explanation
Indices: 22137819--22138071 Score: 225
Period size: 68 Copynumber: 3.8 Consensus size: 66
22137809 ATACAGATGG
* ** * * *
22137819 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAT
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAGAT
22137882 ATTA
64 A-TA
* *
22137886 TCATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-G-GA
1 T-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
22137949 TA
65 TA
* * * * *
22137951 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
22138016 TA-A
63 TATA
* * * *
22138019 -AT-TGGCTAGGTCTCATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
22138072 CAAAATTATG
Statistics
Matches: 153, Mismatches: 24, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 25 0.16
65 3 0.02
66 23 0.15
67 31 0.20
68 49 0.32
69 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (66 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAT
A
Found at i:22140604 original size:24 final size:23
Alignment explanation
Indices: 22140572--22140623 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
22140562 CATTTACCTT
*
22140572 TCAACTTATCACCTATTTCAT-ACC
1 TCAAATTAT-ACC-ATTTCATCACC
*
22140596 TCAAATTATACCATTTCATCATC
1 TCAAATTATACCATTTCATCACC
22140619 TCAAA
1 TCAAA
22140624 ACCAAATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.28
23 10 0.40
24 8 0.32
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.37
Consensus pattern (23 bp):
TCAAATTATACCATTTCATCACC
Found at i:22157663 original size:36 final size:37
Alignment explanation
Indices: 22157621--22157690 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
22157611 AGTACATAAG
* * *
22157621 TAATCCAACTGA-AACACGCCAAATTCTCATAAGTTA
1 TAATCCAACCGATAACAAGCCAAATGCTCATAAGTTA
*
22157657 TAATCCACCCGATAACAAGCCAAATGCTCATAAG
1 TAATCCAACCGATAACAAGCCAAATGCTCATAAG
22157691 AGCTAACCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
36 10 0.34
37 19 0.66
ACGTcount: A:0.41, C:0.27, G:0.10, T:0.21
Consensus pattern (37 bp):
TAATCCAACCGATAACAAGCCAAATGCTCATAAGTTA
Found at i:22157746 original size:37 final size:37
Alignment explanation
Indices: 22157633--22157754 Score: 136
Period size: 37 Copynumber: 3.3 Consensus size: 37
22157623 ATCCAACTGA
*** *
22157633 AACACGCCAAATTCTCATAAGTTATAATCCACCCGAT
1 AACACGCCAAATTCTCATAAGAGCTAATCTACCCGAT
* * * *
22157670 AACAAGCCAAATGCTCATAAGAGCTAACCTACCCAAT
1 AACACGCCAAATTCTCATAAGAGCTAATCTACCCGAT
* **
22157707 AACACGCCAAATTTTCATAAGAGCTAATCTAGTCGAT
1 AACACGCCAAATTCTCATAAGAGCTAATCTACCCGAT
*
22157744 AACACTCCAAA
1 AACACGCCAAA
22157755 ATAAGGACTA
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.41, C:0.28, G:0.10, T:0.21
Consensus pattern (37 bp):
AACACGCCAAATTCTCATAAGAGCTAATCTACCCGAT
Found at i:22164176 original size:40 final size:40
Alignment explanation
Indices: 22164132--22164288 Score: 111
Period size: 40 Copynumber: 3.8 Consensus size: 40
22164122 CTATGTTCGA
* * *
22164132 CACTAAGTGTGCGATTTGAAATTGCTTTGGCTATAAATAG
1 CACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAATAG
* * * ** *
22164172 CACTAAGTGCGTGAATTGGAATAGCTTCGGCTATATGTGG
1 CACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAATAG
* * * *
22164212 CACTAAGTGTGCAATATTGAGATAGTTTCGG-TTTAATATGATGG
1 CACTAAGTGTGCGA-ATTGAAATAGCTTCGGCTATAA-AT-A--G
**
22164256 CACTAAGTGTGCGATATT-TTATAGCTTCGGCTA
1 CACTAAGTGTGCGA-ATTGAAATAGCTTCGGCTA
22164289 GATCATTGGT
Statistics
Matches: 87, Mismatches: 24, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
40 45 0.52
41 14 0.16
43 9 0.10
44 19 0.22
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.34
Consensus pattern (40 bp):
CACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAATAG
Found at i:22174473 original size:40 final size:39
Alignment explanation
Indices: 22174428--22174531 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 39
22174418 ATGATAAATA
* *
22174428 GACTATGTTAGACACTAAGTGTG-TGATTTGAAATAGCTTC
1 GACTATATTAG-CACTAAGTGTGCT-AATTGAAATAGCTTC
* *
22174468 GACTATAAATAGCACTAAGTGTGCTAATTGGAATAGCTTC
1 GACTAT-ATTAGCACTAAGTGTGCTAATTGAAATAGCTTC
*
22174508 GACTATATGTGGCACTAAGTGTGC
1 GACTATAT-TAGCACTAAGTGTGC
22174532 AATATTGAGA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
39 1 0.02
40 50 0.91
41 4 0.07
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (39 bp):
GACTATATTAGCACTAAGTGTGCTAATTGAAATAGCTTC
Found at i:22176938 original size:55 final size:56
Alignment explanation
Indices: 22176848--22176982 Score: 175
Period size: 55 Copynumber: 2.4 Consensus size: 56
22176838 GACCATGGCA
* **
22176848 TTGATA-ATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATA-GTGGTT
1 TTGATATATGTGTGCGAGTAAGACCACATTTAATACGTTGACATCGATATGTGACT
* * *
22176902 TTGATATATGTGTACGAGTAAGACCACGTTTTATACGTTGACATCGATATGTGACT
1 TTGATATATGTGTGCGAGTAAGACCACATTTAATACGTTGACATCGATATGTGACT
** *
22176958 CCGGTATATGTGTGCGAGTAAGACC
1 TTGATATATGTGTGCGAGTAAGACC
22176983 TTGTCTGGGA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
54 6 0.09
55 38 0.55
56 25 0.36
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (56 bp):
TTGATATATGTGTGCGAGTAAGACCACATTTAATACGTTGACATCGATATGTGACT
Found at i:22184878 original size:28 final size:28
Alignment explanation
Indices: 22184812--22184912 Score: 98
Period size: 28 Copynumber: 3.5 Consensus size: 28
22184802 CGACAAGATT
* *
22184812 GCACTAAGTGTGCG-GATTTAAAATTGTATA
1 GCACTAAGTGTGCGAG-TTT--GATTATATA
*
22184842 GCACTAAGTGTGCGAGTTTGATTCTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
22184870 GCACTAAGTGTGCGAG-CTGAAAATATATA
1 GCACTAAGTGTGCGAGTTTG--ATTATATA
22184899 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22184913 GATTCACTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 17 0.27
31 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22184924 original size:29 final size:29
Alignment explanation
Indices: 22184812--22184916 Score: 108
Period size: 29 Copynumber: 3.6 Consensus size: 29
22184802 CGACAAGATT
* *
22184812 GCACTAAGTGTGCGGATTTAAAATTGTATA
1 GCACTAAGTGTGCGGATTGAAAA-TATATA
* * *
22184842 GCACTAAGTGTGCGAGTTTG--ATTCTATA
1 GCACTAAGTGTGCG-GATTGAAAATATATA
*
22184870 GCACTAAGTGTGC-GAGCTGAAAATATATA
1 GCACTAAGTGTGCGGA-TTGAAAATATATA
22184899 GCACTAAGTGTGCGGATT
1 GCACTAAGTGTGCGGATT
22184917 CACTATATGC
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
26 1 0.02
27 2 0.03
28 18 0.30
29 21 0.34
30 16 0.26
31 3 0.05
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGGATTGAAAATATATA
Found at i:22192860 original size:29 final size:30
Alignment explanation
Indices: 22192792--22192864 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 30
22192782 GACAAGATTG
* * * *
22192792 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
22192822 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
22192851 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22192865 GATTCACTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 19 0.49
30 20 0.51
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:22194512 original size:40 final size:40
Alignment explanation
Indices: 22194456--22194623 Score: 166
Period size: 40 Copynumber: 4.2 Consensus size: 40
22194446 CAATTGAATG
* *
22194456 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
22194497 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * * *
22194536 ATATCTGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
* ** *
22194576 ATATCCGGGCTAAGACCCAAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
22194616 ATATCCGG
1 ATATCCGG
22194624 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
39 8 0.07
40 95 0.89
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:22194589 original size:80 final size:79
Alignment explanation
Indices: 22194456--22194623 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
22194446 CAATTGAATG
* * *
22194456 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCAAAGGCA
22194521 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTTGTT
* * *
22194536 ATATCTGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCAAAGGC
** *
22194600 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTTGTT
22194616 ATATCCGG
1 ATATCCGG
22194624 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
79 2 0.03
80 73 0.96
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCAAAGGCAT
TCGTGCAAGTTGTT
Found at i:22196579 original size:46 final size:45
Alignment explanation
Indices: 22196512--22196678 Score: 196
Period size: 47 Copynumber: 3.6 Consensus size: 45
22196502 CCGCCCTAAG
*
22196512 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
22196558 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * *
22196605 CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
22196650 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
22196679 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 2 0.02
45 28 0.27
46 28 0.27
47 29 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:22196627 original size:47 final size:48
Alignment explanation
Indices: 22196508--22196682 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 48
22196498 TAACCCGCCC
* * * *
22196508 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-ACATCCA
**
22196554 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTACATCCA
* *
22196602 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTACATCCA
*
22196646 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
22196683 TCAACCATCC
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 5 0.05
43 2 0.02
44 3 0.03
45 29 0.27
46 31 0.28
47 29 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (48 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTACATCCA
Found at i:22196671 original size:92 final size:93
Alignment explanation
Indices: 22196513--22196682 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
22196503 CGCCCTAAGT
* *
22196513 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
22196578 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
22196606 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
22196670 CGAGTTCGGATGC
66 CGAGTTCGGATGC
22196683 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 43 0.59
93 30 0.41
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:22203811 original size:19 final size:20
Alignment explanation
Indices: 22203787--22203824 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
22203777 GGTACCACCA
22203787 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
22203806 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
22203825 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:22204147 original size:46 final size:46
Alignment explanation
Indices: 22204044--22204170 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 46
22204034 GTAACCGCCC
22204044 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * *
22204092 CTCA--CAACTCGGACTCAACTCAACGAGTTCGGA-C-ATTTGCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
22204134 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22204171 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
42 6 0.09
43 2 0.03
44 2 0.03
46 56 0.81
48 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:22204189 original size:46 final size:45
Alignment explanation
Indices: 22204047--22204189 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
22204037 ACCGCCCCTA
22204047 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
22204094 CA--CAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
22204139 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
22204185 AGTGA
1 AGTGA
22204190 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 22
0.72 0.07 0.21
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 62 0.81
48 4 0.05
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:22207258 original size:14 final size:13
Alignment explanation
Indices: 22207212--22207264 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 13
22207202 TCATAATGAC
22207212 TAATTAATTTAATT
1 TAATT-ATTTAATT
22207226 TAA-TATTTGAATTT
1 TAATTATTT-AA-TT
22207240 TAATTATTTAATT
1 TAATTATTTAATT
*
22207253 ATAATTAATTAA
1 -TAATTATTTAA
22207265 ATAATAATTC
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
12 4 0.12
13 5 0.15
14 20 0.59
15 5 0.15
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (13 bp):
TAATTATTTAATT
Found at i:22211440 original size:27 final size:27
Alignment explanation
Indices: 22211073--22211439 Score: 461
Period size: 27 Copynumber: 13.6 Consensus size: 27
22211063 AAAGTACTCC
*
22211073 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
22211100 C-AGGTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
22211127 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
22211154 -TAGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
22211181 CGATTTACAGAATTACCATTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
22211208 CAATTTACATAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
22211235 CGATTTACAGAATTACCATTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
22211262 CAATTTACATAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
22211288 CTGATTTACATAATTATCGTTTTACCCT
1 C-GATTTACAGAATTACCGTTTTACCCT
22211316 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
22211343 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ***
22211370 CGATTTATAGAATTATTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
22211397 TGATTTACAGAATTACTGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
*
22211424 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
22211440 TAAAATACCC
Statistics
Matches: 299, Mismatches: 35, Indels: 12
0.86 0.10 0.03
Matches are distributed among these distances:
26 3 0.01
27 293 0.98
28 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:22212706 original size:25 final size:25
Alignment explanation
Indices: 22212678--22212725 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22212668 TTATACCATG
* * *
22212678 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
22212703 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
22212726 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:22212828 original size:20 final size:20
Alignment explanation
Indices: 22212768--22212828 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
22212758 ATAAATATGG
*
22212768 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
22212788 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
22212808 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
22212828 T
1 T
22212829 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:22212905 original size:24 final size:24
Alignment explanation
Indices: 22212878--22213020 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
22212868 GAGGAAGTGA
22212878 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
22212902 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
22212926 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
22212949 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
22212973 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
22212997 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
22213021 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:22212971 original size:47 final size:47
Alignment explanation
Indices: 22212878--22213020 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
22212868 GAGGAAGTGA
22212878 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
22212926 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
22212973 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
22213021 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:22212994 original size:71 final size:72
Alignment explanation
Indices: 22212878--22213021 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
22212868 GAGGAAGTGA
*
22212878 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
22212941 CCAGTTAT
65 CCAGTTAT
** * *
22212949 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
22213014 CAGTTAT
66 CAGTTAT
22213021 A
1 A
22213022 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:22213247 original size:31 final size:31
Alignment explanation
Indices: 22213212--22213275 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
22213202 CGTTTACAGT
22213212 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
22213243 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
22213274 AA
1 AA
22213276 CATGAAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:22218339 original size:39 final size:39
Alignment explanation
Indices: 22218261--22218410 Score: 264
Period size: 39 Copynumber: 3.8 Consensus size: 39
22218251 TATGGTAGCC
* *
22218261 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
22218301 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
22218340 CGCACAATTGCCTTCGGGATTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
22218379 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
22218411 TACCCGAACA
Statistics
Matches: 106, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:22226349 original size:39 final size:39
Alignment explanation
Indices: 22226271--22226420 Score: 264
Period size: 39 Copynumber: 3.8 Consensus size: 39
22226261 TATGGTAGCC
* *
22226271 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
22226311 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
22226350 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
22226389 CGCACAATTACCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
22226421 TACCCGAAAT
Statistics
Matches: 107, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 90 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:22236817 original size:23 final size:23
Alignment explanation
Indices: 22236791--22236871 Score: 58
Period size: 23 Copynumber: 3.4 Consensus size: 23
22236781 CTCTATATGT
22236791 ATATAAGAATATGACTTTCAATA
1 ATATAAGAATATGACTTTCAATA
* * * * *
22236814 ATATGAGAATGTTCAGAACTGT--GTT
1 ATATAAGAAT-AT--G-ACTTTCAATA
22236839 ATATAAGAATATGACTTTCAATA
1 ATATAAGAATATGACTTTCAATA
*
22236862 ATATGAGAAT
1 ATATAAGAAT
22236872 GTTCAGAACT
Statistics
Matches: 41, Mismatches: 11, Indels: 12
0.64 0.17 0.19
Matches are distributed among these distances:
21 4 0.10
22 1 0.02
23 19 0.46
24 2 0.05
25 10 0.24
26 1 0.02
27 4 0.10
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (23 bp):
ATATAAGAATATGACTTTCAATA
Found at i:22236845 original size:48 final size:48
Alignment explanation
Indices: 22236790--22236886 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
22236780 GCTCTATATG
22236790 TATATAAGAATATGACTTTCAATAATATGAGAATGTTCAGAACTGTGT
1 TATATAAGAATATGACTTTCAATAATATGAGAATGTTCAGAACTGTGT
22236838 TATATAAGAATATGACTTTCAATAATATGAGAATGTTCAGAACTGTGT
1 TATATAAGAATATGACTTTCAATAATATGAGAATGTTCAGAACTGTGT
22236886 T
1 T
22236887 TATGTTCATT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.36
Consensus pattern (48 bp):
TATATAAGAATATGACTTTCAATAATATGAGAATGTTCAGAACTGTGT
Found at i:22241873 original size:21 final size:20
Alignment explanation
Indices: 22241835--22241879 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
22241825 TTTGCCTAAT
22241835 ATGTGAATTGAATAAAATTGA
1 ATGTGAATTGAATAAAATT-A
** *
22241856 ATGTGAATTTTATCAAATTA
1 ATGTGAATTGAATAAAATTA
22241876 ATGT
1 ATGT
22241880 TAAATTCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (20 bp):
ATGTGAATTGAATAAAATTA
Found at i:22245800 original size:14 final size:15
Alignment explanation
Indices: 22245776--22245805 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
22245766 GGATATCAAA
22245776 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
22245791 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
22245805 A
1 A
22245806 AGTTAAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:22247146 original size:40 final size:38
Alignment explanation
Indices: 22247023--22247147 Score: 126
Period size: 40 Copynumber: 3.2 Consensus size: 38
22247013 CCTTTGGTGG
* * *
22247023 CTTTAGCGGCGCTTTCTAAAAACGTCGCTAAAGATTGAGT
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCTAATG-TTGA-T
* ** *
22247063 -ATTAGCGGCGCTTTTTTAAAAACGCCGCTATATGTACAC
1 CTTTAGCGGCGC-TTTTTAAAAACGCCGCTA-ATGTTGAT
22247102 CTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGAT
1 CTTTAGCGGCGCTTTTTA-AAAACGCCGCTAATG-TTGAT
22247142 CTTTAG
1 CTTTAG
22247148 TGGCATTTTA
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
39 19 0.28
40 48 0.70
41 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (38 bp):
CTTTAGCGGCGCTTTTTAAAAACGCCGCTAATGTTGAT
Found at i:22247163 original size:79 final size:79
Alignment explanation
Indices: 22247023--22247169 Score: 172
Period size: 79 Copynumber: 1.9 Consensus size: 79
22247013 CCTTTGGTGG
* * **
22247023 CTTTAGCGGCGCTTTCTAAAAACGTCGCTAAAGATTGAGTATTAGCGGCGCTTTTTTAAAAACGC
1 CTTTAGCGGCGCTTTCTAAAAACGCCGCTAAAGATTGAGTATTAGCGGCGATTTTAAAAAAACGC
22247088 CGCTATATGTACAC
66 CGCTATATGTACAC
* * * * * *
22247102 CTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGA-TCTTTAGTGGC-ATTTTAAAAAAAT
1 CTTTAGCGGCGCTTTCTA-AAAACGCCGCTAAAGATTGAGT-ATTAGCGGCGATTTTAAAAAAAC
22247165 GCCGC
64 GCCGC
22247170 AAAATAATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
79 32 0.57
80 24 0.43
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (79 bp):
CTTTAGCGGCGCTTTCTAAAAACGCCGCTAAAGATTGAGTATTAGCGGCGATTTTAAAAAAACGC
CGCTATATGTACAC
Found at i:22247492 original size:49 final size:49
Alignment explanation
Indices: 22247439--22247536 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
22247429 ATTGTAAATA
22247439 AGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAGG
1 AGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAGG
22247488 AGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAGG
1 AGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAGG
22247537 GTTTACGATA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.47
Consensus pattern (49 bp):
AGATAGTATTAATTTTAAAATATTGAATTAATTATCATTATATTTTAGG
Found at i:22256890 original size:28 final size:28
Alignment explanation
Indices: 22256842--22256910 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
22256832 TTTAAAACCC
* *
22256842 TAGGGGT-ATATCAGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
22256869 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
22256897 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
22256911 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.20, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:22264679 original size:27 final size:27
Alignment explanation
Indices: 22264649--22264708 Score: 93
Period size: 28 Copynumber: 2.2 Consensus size: 27
22264639 AAAACCCTAG
22264649 GGGTATATCGGTAATTTTGCTCTTTAA
1 GGGTATATCGGTAATTTTGCTCTTTAA
* *
22264676 GGGTAATTTCGGTAATTTTGCTCTTTAG
1 GGGT-ATATCGGTAATTTTGCTCTTTAA
22264704 GGGTA
1 GGGTA
22264709 ATTTCGTGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43
Consensus pattern (27 bp):
GGGTATATCGGTAATTTTGCTCTTTAA
Found at i:22264688 original size:28 final size:28
Alignment explanation
Indices: 22264656--22264714 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
22264646 TAGGGGTATA
22264656 TCGGTAATTTTGCTCTTTAAGGGTAATT
1 TCGGTAATTTTGCTCTTTAAGGGTAATT
*
22264684 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAAGGGTAATT
22264712 TCG
1 TCG
22264715 TGATCTACGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.19, C:0.12, G:0.24, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAAGGGTAATT
Found at i:22272892 original size:3 final size:3
Alignment explanation
Indices: 22272884--22272916 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
22272874 AATCCCAAAG
*
22272884 TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22272917 CCCATATTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:22276844 original size:80 final size:80
Alignment explanation
Indices: 22276704--22276910 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
22276694 CGGAATACAA
* * * *
22276704 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCAGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
22276768 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
22276784 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
22276848 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
22276864 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
22276911 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:22276911 original size:40 final size:40
Alignment explanation
Indices: 22276704--22276911 Score: 197
Period size: 40 Copynumber: 5.2 Consensus size: 40
22276694 CGGAATACAA
* *
22276704 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
22276744 CCAGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
22276784 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* ** *
22276824 CCGGATGTGGTC-ACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATAT-AACAACTAGCACAAAT-GCCTTCGGGTCTTAGC
** * * *
22276864 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
22276904 CCGGATAT
1 CCGGATAT
22276912 CATTCAATTG
Statistics
Matches: 138, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.02
40 131 0.95
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:22279203 original size:17 final size:18
Alignment explanation
Indices: 22279172--22279205 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22279162 GGTGATGGGT
*
22279172 GTTACAACAATAGCATAA
1 GTTACAACAAGAGCATAA
22279190 GTTA-AACAAGAGCATA
1 GTTACAACAAGAGCATA
22279206 CTAAGGAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.21
Consensus pattern (18 bp):
GTTACAACAAGAGCATAA
Found at i:22283873 original size:20 final size:20
Alignment explanation
Indices: 22283822--22283865 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
22283812 TGGCTTGCCT
*
22283822 ACACAGGCATGTCCCAAGCC
1 ACACAGGCGTGTCCCAAGCC
* *
22283842 ACACAGGGGTGTCCCTAGCC
1 ACACAGGCGTGTCCCAAGCC
22283862 ACAC
1 ACAC
22283866 GAGCGTGTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.39, G:0.23, T:0.11
Consensus pattern (20 bp):
ACACAGGCGTGTCCCAAGCC
Found at i:22291178 original size:29 final size:28
Alignment explanation
Indices: 22291108--22291182 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
22291098 ATACTCGATT
* *
22291108 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
22291136 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
22291165 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
22291183 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:22291199 original size:29 final size:29
Alignment explanation
Indices: 22291166--22291239 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
22291156 CCTTCGAGCT
22291166 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
22291195 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
22291224 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
22291240 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:22298495 original size:40 final size:40
Alignment explanation
Indices: 22298411--22298577 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
22298401 CAATTGAATG
* *
22298411 ATATCCGGGTTAAGA-CCGAAGGCAATT-GTGCTAG-TGACTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG--TT
*
22298451 -TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
* * *
22298490 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
* *
22298530 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
22298570 ATATCCGG
1 ATATCCGG
22298578 TTGTATTCCG
Statistics
Matches: 113, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
39 18 0.16
40 93 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
Found at i:22298543 original size:80 final size:78
Alignment explanation
Indices: 22298411--22298577 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 78
22298401 CAATTGAATG
* *
22298411 ATATCCGGGTTAAGACCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGACCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCAT
*
22298476 TCGTGCAAGTTGTT
65 TCGTGCAAGTGGTT
* *
22298490 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGA-CCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
22298554 ATTCGTGCGTGTGGTT
63 ATTCGTGCAAGTGGTT
22298570 ATATCCGG
1 ATATCCGG
22298578 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 15 0.19
80 62 0.79
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (78 bp):
ATATCCGGGCTAAGACCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTT
Found at i:22305764 original size:452 final size:451
Alignment explanation
Indices: 22304921--22305827 Score: 1805
Period size: 452 Copynumber: 2.0 Consensus size: 451
22304911 GTTAGTAGGA
22304921 CTTGTGTGACACTTTTGAAAAGTGAAAGGCTAATCTATAAGGACCTAATAGTGCATGTAGTCAAA
1 CTTGTGTGACACTTTTGAAAAGTGAAAGGCTAATCTATAAGGACCTAATAGTGCATGTAGTCAAA
22304986 GGGGAGGACTTGCATGTCAAATTCCCCCCCCCAAGTTGTAGTGGCCGGCCATGACAAGGAATCAT
66 GGGGAGGACTTGCATGTCAAATTCCCCCCCCCAAGTTGTAGTGGCCGGCCATGACAAGGAATCAT
22305051 GGGCTAAACATGTCATGAAACATGTTTTGTTGGTGCATTAGGGAGAAACAATAAACAAATAAGTA
131 GGGCTAAACATGTCATGAAACATGTTTTGTTGGTGCATTAGGGAGAAACAATAAACAAATAAGTA
22305116 TGGGTAATAAAGAAAGAAAAAAAAATGTGTGTGTGTGAGTGAAACCCCCCATTGCCGTGCATTGT
196 TGGGTAATAAAGAAAGAAAAAAAAATGTGTGTGTGTGAGTGAAACCCCCCATTGCCGTGCATTGT
22305181 GGAGGAGAAAAGAAAAAAAATTGTTCATCCATCTTTTCATTCTCTCTTGACCGAAAATACTAGAG
261 GGAGGAGAAAAGAAAAAAAATTGTTCATCCATCTTTTCATTCTCTCTTGACCGAAAATACTAGAG
22305246 GAAGGAAGGAATTTTGCTTCATGTTTGTTTTGGAAGAGGATTAGGAAGAGGTTGGCTATACTTGC
326 GAAGGAAGGAATTTTGCTTCATGTTTGTTTTGGAAGAGGATTAGGAAGAGGTTGGCTATACTTGC
22305311 ATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCATGCACGTTTTTAGTTGCTAG
391 ATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCATGCACGTTTTTAGTTGCTAG
22305372 CTTGTGTGACACTTTTGAAAAGTGAAAGGCTAATCTATAAGGACCTAATAGTGCATGTAGTCAAA
1 CTTGTGTGACACTTTTGAAAAGTGAAAGGCTAATCTATAAGGACCTAATAGTGCATGTAGTCAAA
22305437 GGGGAGGACTTGCATGTCAAATTCCCCCCCCCCAAGTTGTAGTGGCCGGCCATGACAAGGAATCA
66 GGGGAGGACTTGCATGTCAAATT-CCCCCCCCCAAGTTGTAGTGGCCGGCCATGACAAGGAATCA
22305502 TGGGCTAAACATGTCATGAAACATGTTTTGTTGGTGCATTAGGGAGAAACAATAAACAAATAAGT
130 TGGGCTAAACATGTCATGAAACATGTTTTGTTGGTGCATTAGGGAGAAACAATAAACAAATAAGT
22305567 ATGGGTAATAAAGAAAGAAAAAAAAATGTGTGTGTGTGAGTGAAACCCCCCATTGCCGTGCATTG
195 ATGGGTAATAAAGAAAGAAAAAAAAATGTGTGTGTGTGAGTGAAACCCCCCATTGCCGTGCATTG
22305632 TGGAGGAGAAAAGAAAAAAAATTGTTCATCCATCTTTTCATTCTCTCTTGACCGAAAATACTAGA
260 TGGAGGAGAAAAGAAAAAAAATTGTTCATCCATCTTTTCATTCTCTCTTGACCGAAAATACTAGA
22305697 GGAAGGAAGGAATTTTGCTTCATGTTTGTTTTGGAAGAGGATTAGGAAGAGGTTGGCTATACTTG
325 GGAAGGAAGGAATTTTGCTTCATGTTTGTTTTGGAAGAGGATTAGGAAGAGGTTGGCTATACTTG
22305762 CATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCATGCACGTTTTTAGTTGCTAG
390 CATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCATGCACGTTTTTAGTTGCTAG
22305824 CTTG
1 CTTG
22305828 ATGTTCTTGG
Statistics
Matches: 455, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
451 88 0.19
452 367 0.81
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (451 bp):
CTTGTGTGACACTTTTGAAAAGTGAAAGGCTAATCTATAAGGACCTAATAGTGCATGTAGTCAAA
GGGGAGGACTTGCATGTCAAATTCCCCCCCCCAAGTTGTAGTGGCCGGCCATGACAAGGAATCAT
GGGCTAAACATGTCATGAAACATGTTTTGTTGGTGCATTAGGGAGAAACAATAAACAAATAAGTA
TGGGTAATAAAGAAAGAAAAAAAAATGTGTGTGTGTGAGTGAAACCCCCCATTGCCGTGCATTGT
GGAGGAGAAAAGAAAAAAAATTGTTCATCCATCTTTTCATTCTCTCTTGACCGAAAATACTAGAG
GAAGGAAGGAATTTTGCTTCATGTTTGTTTTGGAAGAGGATTAGGAAGAGGTTGGCTATACTTGC
ATCAAGATTAAGGTATGTTTGAGGTTGTGCCATGAGATTCATGCACGTTTTTAGTTGCTAG
Found at i:22306957 original size:40 final size:40
Alignment explanation
Indices: 22306901--22307068 Score: 166
Period size: 40 Copynumber: 4.2 Consensus size: 40
22306891 CAATTGAATG
* * *
22306901 ATATCCGGGTTAAGACCCGAAGGCAATTGTACTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
22306942 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
22306981 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
* ** *
22307021 ATATCCAGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
22307061 ATATCCGG
1 ATATCCGG
22307069 TTGTATTTCG
Statistics
Matches: 107, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
39 8 0.07
40 95 0.89
41 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:22307034 original size:80 final size:79
Alignment explanation
Indices: 22306901--22307068 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
22306891 CAATTGAATG
* * *
22306901 ATATCCGGGTTAAGACCCGAAGGCAATTGTACTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTACGAGTGA-TTTATCCAGGCTAAGACCCGAAGGCA
*
22306966 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* * *
22306981 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTACGAGT-GATT-TATCCAGGCTAAGACCCGAAGGC
**
22307045 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
22307061 ATATCCGG
1 ATATCCGG
22307069 TTGTATTTCG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 2 0.03
80 74 0.96
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTACGAGTGATTTATCCAGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:22320303 original size:24 final size:24
Alignment explanation
Indices: 22320271--22320322 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
22320261 GACGCCACAC
* * *
22320271 GGCCGTGTGGTATGCCATGTGGTA
1 GGCCATGTGGTAAGCCATATGGTA
22320295 GGCCATGTGGTAAGCCATATGGTA
1 GGCCATGTGGTAAGCCATATGGTA
22320319 GGCC
1 GGCC
22320323 GTATGCATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.17, C:0.19, G:0.38, T:0.25
Consensus pattern (24 bp):
GGCCATGTGGTAAGCCATATGGTA
Found at i:22320327 original size:12 final size:12
Alignment explanation
Indices: 22320271--22320322 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
22320261 GACGCCACAC
*
22320271 GGCCGTGTGGTA
1 GGCCATGTGGTA
*
22320283 TGCCATGTGGTA
1 GGCCATGTGGTA
22320295 GGCCATGTGGTA
1 GGCCATGTGGTA
* *
22320307 AGCCATATGGTA
1 GGCCATGTGGTA
22320319 GGCC
1 GGCC
22320323 GTATGCATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.38, T:0.25
Consensus pattern (12 bp):
GGCCATGTGGTA
Found at i:22327160 original size:71 final size:71
Alignment explanation
Indices: 22327076--22327239 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
22327066 CGATTTGTCT
22327076 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
22327141 CTTTCA
66 CTTTCA
22327147 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
22327212 CTTTCA
66 CTTTCA
22327218 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
22327240 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:22327277 original size:71 final size:70
Alignment explanation
Indices: 22327076--22327273 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
22327066 CGATTTGTCT
* * * *
22327076 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
22327141 CTTTCA
65 CTTTCA
* * * *
22327147 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
22327212 CTTTCA
65 CTTTCA
* *
22327218 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
22327274 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:22335270 original size:14 final size:14
Alignment explanation
Indices: 22335251--22335278 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
22335241 AATAAGTATG
22335251 TGTGAGTAATCATT
1 TGTGAGTAATCATT
22335265 TGTGAGTAATCATT
1 TGTGAGTAATCATT
22335279 GAGTGATATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
TGTGAGTAATCATT
Found at i:22335668 original size:29 final size:29
Alignment explanation
Indices: 22335626--22335720 Score: 163
Period size: 29 Copynumber: 3.3 Consensus size: 29
22335616 AAATCATGTT
22335626 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
22335655 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
** *
22335684 TGCGAATGTGATTTGGGCCTAATGGGTCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
22335713 TATGAATG
1 TATGAATG
22335721 AAATTGGGCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.24, C:0.13, G:0.32, T:0.32
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:22337710 original size:20 final size:20
Alignment explanation
Indices: 22337685--22337722 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22337675 GTTTATTCGC
*
22337685 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
22337705 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
22337723 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:22339382 original size:28 final size:28
Alignment explanation
Indices: 22339350--22339418 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
22339340 GCGTAGATCA
22339350 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
22339378 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
22339406 CGATA-TACCCCTA
1 CGAAATTACCCCTA
22339419 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:22345705 original size:20 final size:20
Alignment explanation
Indices: 22345680--22345717 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22345670 GTTTATTCGC
*
22345680 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
22345700 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
22345718 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:22347371 original size:28 final size:28
Alignment explanation
Indices: 22347339--22347407 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
22347329 GCGTAGATCA
22347339 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
22347367 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
22347395 CGATA-TACCCCTA
1 CGAAATTACCCCTA
22347408 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:22352230 original size:40 final size:40
Alignment explanation
Indices: 22352174--22352377 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
22352164 CGGAATTTAA
* ** *
22352174 CCGGATATAGTTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
22352214 CCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22352254 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22352293 CCAGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
22352333 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22352373 CCGGA
1 CCGGA
22352378 CATCATTCGA
Statistics
Matches: 140, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22352307 original size:79 final size:79
Alignment explanation
Indices: 22352160--22352375 Score: 253
Period size: 79 Copynumber: 2.7 Consensus size: 79
22352150 GAATCACGTA
* ** * **
22352160 CCTTCGGAAT-TTAACCGGATATAGTTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGG-ATCTTAACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
22352224 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
22352239 CCTTCAGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAGAAT-T
1 CCTTC-GGATCTTAA-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GAATAT
22352301 AGTAACTCGCACAAATG
63 AGTAACTCGCACAAATG
* * *
22352318 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CCTTCGGATCTTA-ACCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
22352376 GACATCATTC
Statistics
Matches: 118, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
78 3 0.03
79 66 0.56
80 49 0.42
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (79 bp):
CCTTCGGATCTTAACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT
AACTCGCACAAATG
Found at i:22358225 original size:29 final size:28
Alignment explanation
Indices: 22358155--22358229 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
22358145 ATACTCGATT
* *
22358155 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
22358183 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
22358212 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
22358230 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:22358246 original size:29 final size:29
Alignment explanation
Indices: 22358213--22358286 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
22358203 CCTTCGAGCT
22358213 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
22358242 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
22358271 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
22358287 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:22363582 original size:24 final size:24
Alignment explanation
Indices: 22363552--22363818 Score: 489
Period size: 24 Copynumber: 11.1 Consensus size: 24
22363542 GAATGTGACT
* *
22363552 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
22363576 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22363600 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22363624 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22363648 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22363672 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
22363696 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22363720 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22363744 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22363768 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
22363792 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22363816 ATA
1 ATA
22363819 TGGTCTTTGC
Statistics
Matches: 238, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 238 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:22371590 original size:24 final size:24
Alignment explanation
Indices: 22371560--22371830 Score: 420
Period size: 24 Copynumber: 11.1 Consensus size: 24
22371550 GAATGTGACT
* *
22371560 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
22371584 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22371608 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22371632 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
22371656 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
22371680 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
22371704 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22371728 ATAGTAAATCGCACACATAGTGCCATAGCC
1 ATAGTAAATCGCACACATA--G---T-GCC
22371758 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22371782 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22371806 ATAGTAAATCG--CACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
22371828 ATA
1 ATA
22371831 TGGTCTTTGC
Statistics
Matches: 237, Mismatches: 4, Indels: 14
0.93 0.02 0.05
Matches are distributed among these distances:
22 14 0.06
24 197 0.83
25 1 0.00
26 1 0.00
28 1 0.00
29 1 0.00
30 22 0.09
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:22373762 original size:38 final size:39
Alignment explanation
Indices: 22373639--22373764 Score: 148
Period size: 38 Copynumber: 3.3 Consensus size: 39
22373629 ATGCTGGAAA
* * * *
22373639 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-CGG
* * * *
22373679 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAC-A
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGACGG
*
22373717 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGACGG
22373755 TTATATCCGG
1 TTATATCCGG
22373765 TTATATTCCG
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
37 2 0.03
38 39 0.55
40 30 0.42
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGACGG
Found at i:22381698 original size:40 final size:40
Alignment explanation
Indices: 22381613--22381763 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
22381603 AATTGAATGA
* * * **
22381613 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTT
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
22381653 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
22381694 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
22381733 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
22381764 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 77 0.85
41 5 0.05
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:22381777 original size:40 final size:40
Alignment explanation
Indices: 22381653--22381779 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
22381643 CTGGAAATTT
* * * * *
22381653 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
22381693 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
22381733 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
22381773 TATCCGG
1 TATCCGG
22381780 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:22383558 original size:6 final size:6
Alignment explanation
Indices: 22383547--22383733 Score: 154
Period size: 6 Copynumber: 30.8 Consensus size: 6
22383537 AACCAAAATG
* * *
22383547 AGAATC AGAATC AGAATC A-ATAAC AAAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AGA-ATC AGAATC AGAATC AGAATC AGA-ATC
* *
22383595 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
22383644 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
22383692 AAAATC AGAATC AGAATT ACGTGAT- AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
22383734 GTGAATGCAA
Statistics
Matches: 147, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 11 0.07
6 123 0.84
7 9 0.06
8 4 0.03
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:22383562 original size:30 final size:30
Alignment explanation
Indices: 22383526--22383733 Score: 173
Period size: 30 Copynumber: 7.1 Consensus size: 30
22383516 AAGAAACATT
*
22383526 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAAAATCAGAATCAGA
* **
22383556 ATCAGAATCAATAACAAAATCAGAATCAGA
1 ATCAGAATTAGGAACAAAATCAGAATCAGA
* *
22383586 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAAAATCAGAATCAGA
* *
22383616 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAAAATCAGAATCAGA
*
22383647 ATCAG---T---AACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAAAATCAGAATCAGA
* * * *
22383671 ATCAGTATTAGTAACAGAATCAAAATCAGA
1 ATCAGAATTAGGAACAAAATCAGAATCAGA
* *
22383701 ATCAGAATTACGTG-ATAGAATCAGAATCAGA
1 ATCAGAATTA-G-GAACAAAATCAGAATCAGA
22383732 AT
1 AT
22383734 GTGAATGCAA
Statistics
Matches: 151, Mismatches: 15, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
24 22 0.15
27 1 0.01
28 1 0.01
29 1 0.01
30 83 0.55
31 43 0.28
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAAAATCAGAATCAGA
Found at i:22383662 original size:85 final size:85
Alignment explanation
Indices: 22383547--22383733 Score: 320
Period size: 85 Copynumber: 2.2 Consensus size: 85
22383537 AACCAAAATG
*
22383547 AGAATCAGAATCAGAATCAATAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAATAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
*
22383612 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
* * *
22383632 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAAAAT
1 AGAATCAGAATCAGAATCAATAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
*
22383697 CAGAATCAGAATTACGTGAT
66 CAGAATCAGAATTACGTGAC
22383717 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
22383734 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAATAACAAAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
CAGAATCAGAATTACGTGAC
Found at i:22384136 original size:22 final size:22
Alignment explanation
Indices: 22384088--22384146 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
22384078 GTAAATACGT
*
22384088 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
22384110 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
22384132 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
22384147 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:22384313 original size:27 final size:26
Alignment explanation
Indices: 22384234--22384316 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
22384224 TCGATCGGTC
* * *
22384234 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
22384260 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
22384287 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
22384314 AAC
1 AAC
22384317 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:22384547 original size:27 final size:27
Alignment explanation
Indices: 22384517--22384854 Score: 110
Period size: 27 Copynumber: 12.3 Consensus size: 27
22384507 GGCAAAATGG
* *
22384517 TAATTTCACCCCACAAGGGTATCTCGA
1 TAATTTCACCCTACAAGGGTATTTCGA
* * *
22384544 TAATTTTACCCTATAAGGGTATTTCGG
1 TAATTTCACCCTACAAGGGTATTTCGA
*
22384571 T-ATTTCTACCCTACAAGGGTATTTTGA
1 TAATTTC-ACCCTACAAGGGTATTTCGA
* *** *
22384598 TAA-TTCTACCCTACAGGGGTAGGGCAAAACA
1 TAATTTC-ACCCTACAAGGGTATTTC----GA
* * * ** *
22384629 GTCATTTAACACCCT--AGGGGCAAAAT-GG
1 -TAATTT--CACCCTACAAGGG-TATTTCGA
* * * *
22384657 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTTCACCCTACAAGGGTATTTCGA
** * *
22384684 TAA-TTCTACCCTGTAGGGGTATTTCGG
1 TAATTTC-ACCCTACAAGGGTATTTCGA
22384711 T-ATTTCTACCCTACAAGGGTATTTCGA
1 TAATTTC-ACCCTACAAGGGTATTTCGA
* * * *
22384738 TAA-TTCTACCCTATAGGGGTATTTTGG
1 TAATTTC-ACCCTACAAGGGTATTTCGA
* *
22384765 TAA-TTCTATCCTATAAGGGTATTTC-A
1 TAATTTC-ACCCTACAAGGGTATTTCGA
* *
22384791 GTAA-TTCTACCCTATAGGGGTATTTCGGA
1 -TAATTTC-ACCCTACAAGGGTATTTC-GA
22384820 -AA-TTCTACCCTACAAGGGTATTTC-A
1 TAATTTC-ACCCTACAAGGGTATTTCGA
22384845 GTAATTTCAC
1 -TAATTTCAC
22384855 AATCAAGGGT
Statistics
Matches: 237, Mismatches: 51, Indels: 46
0.71 0.15 0.14
Matches are distributed among these distances:
25 5 0.02
26 9 0.04
27 200 0.84
28 5 0.02
29 1 0.00
31 1 0.00
32 7 0.03
33 3 0.01
34 5 0.02
35 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (27 bp):
TAATTTCACCCTACAAGGGTATTTCGA
Found at i:22384618 original size:54 final size:54
Alignment explanation
Indices: 22384533--22384852 Score: 227
Period size: 54 Copynumber: 5.8 Consensus size: 54
22384523 CACCCCACAA
* * * * * * *
22384533 GGGTATCTCGATAATTTTACCCTATAAGGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTTGATAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTATAG
* ***
22384587 GGGTATTTTGATAATTCTACCCTACAGGGGTAGGGCAAAACAGTCATTTAAC-ACCC--TAG
1 GGGTATTTTGATAATTCTACCCTACA-----AGGGTATTTCAGT-ATTT--CTACCCTATAG
* *** * * * * * * *
22384646 GGGCAAAATGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTGTAG
1 GGGTATTTTGATAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTATAG
* * * *
22384700 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTATAG
1 GGGTATTTTGATAATTCTACCCTACAAGGGTATTTCAG-TATTTCTACCCTATAG
* * * *
22384754 GGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTTGATAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTATAG
*
22384808 GGGTATTTCGGA-AATTCTACCCTACAAGGGTATTTCAGTAATTTC
1 GGGTATTT-TGATAATTCTACCCTACAAGGGTATTTCAGT-ATTTC
22384853 ACAATCAAGG
Statistics
Matches: 208, Mismatches: 43, Indels: 29
0.74 0.15 0.10
Matches are distributed among these distances:
51 1 0.00
52 4 0.02
53 4 0.02
54 156 0.75
55 6 0.03
59 28 0.13
60 4 0.02
61 4 0.02
62 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (54 bp):
GGGTATTTTGATAATTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTATAG
Found at i:22384730 original size:140 final size:140
Alignment explanation
Indices: 22384478--22384758 Score: 499
Period size: 140 Copynumber: 2.0 Consensus size: 140
22384468 CTTGCCCACA
22384478 AGGGCAAAACAGTCATTTAACACCCTAGGGGCAAAATGGTAATTTCACCCCACAAGGGTATCTCG
1 AGGGCAAAACAGTCATTTAACACCCTAGGGGCAAAATGGTAATTTCACCCCACAAGGGTATCTCG
* *
22384543 ATAATTTTACCCTATAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTGATAATTCTACC
66 ATAATTCTACCCTATAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
22384608 CTACAGGGGT
131 CTACAGGGGT
*
22384618 AGGGCAAAACAGTCATTTAACACCCTAGGGGCAAAATGGTAATTTTACCCCACAAGGGTATCTCG
1 AGGGCAAAACAGTCATTTAACACCCTAGGGGCAAAATGGTAATTTCACCCCACAAGGGTATCTCG
* * *
22384683 GTAATTCTACCCTGTAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
66 ATAATTCTACCCTATAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
*
22384748 CTATAGGGGT
131 CTACAGGGGT
22384758 A
1 A
22384759 TTTTGGTAAT
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
140 134 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (140 bp):
AGGGCAAAACAGTCATTTAACACCCTAGGGGCAAAATGGTAATTTCACCCCACAAGGGTATCTCG
ATAATTCTACCCTATAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACC
CTACAGGGGT
Found at i:22384767 original size:81 final size:81
Alignment explanation
Indices: 22384658--22384850 Score: 244
Period size: 81 Copynumber: 2.4 Consensus size: 81
22384648 GCAAAATGGT
* * * * * * *
22384658 AATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTGTAGGGGTATTTCGGTATTTCTACCCT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCT
22384723 ACAAGGGTATTTC-GA
66 ACAAGGGTATTTCGGA
* * * *
22384738 TAATTCTACCCTATAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 -AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCC
* *
22384803 TATAGGGGTATTTCGGA
65 TACAAGGGTATTTCGGA
*
22384820 AATTCTACCCTACAAGGGTATTTCAGTAATT
1 AATTCTACCCTACAAGGGTATTTCGGTAATT
22384851 TCACAATCAA
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 92 0.98
82 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (81 bp):
AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGA
Found at i:22385454 original size:27 final size:27
Alignment explanation
Indices: 22384855--22385453 Score: 668
Period size: 27 Copynumber: 22.1 Consensus size: 27
22384845 GTAATTTCAC
* * *
22384855 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
22384882 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
22384909 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* ** * *
22384936 AATCAAGGGTAAAATAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
22384963 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
22384990 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
** * *
22385017 AATCGAGGGTAAAACAATAGTTTTTATA
1 AATCGAGGGTAAAACGGTA-ATTCTATA
**
22385045 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
22385072 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
*
22385099 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
22385126 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
22385153 AATTGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
22385180 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* **
22385207 AATCGAGTGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
22385234 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
22385261 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
22385288 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
22385315 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
22385342 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* ** *
22385369 AATCGAGTGTAAAACAATAACTT-TAAA
1 AATCGAGGGTAAAACGGTAA-TTCTATA
22385396 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
22385423 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
22385450 AATC
1 AATC
22385454 AGGAGTACTT
Statistics
Matches: 500, Mismatches: 61, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
26 6 0.01
27 464 0.93
28 30 0.06
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:22387473 original size:6 final size:6
Alignment explanation
Indices: 22387462--22387708 Score: 217
Period size: 6 Copynumber: 40.8 Consensus size: 6
22387452 AACCAAAATA
*
22387462 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
22387510 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
22387559 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
22387607 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * * *
22387655 AGTATT AGTAA-C AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
22387704 AGAAT
1 AGAAT
22387709 GTGAATGCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 44
0.75 0.08 0.17
Matches are distributed among these distances:
5 17 0.09
6 163 0.83
7 14 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:22388085 original size:22 final size:22
Alignment explanation
Indices: 22388037--22388095 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
22388027 GTAAATACGT
*
22388037 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
22388059 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
22388081 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
22388096 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:22388262 original size:27 final size:26
Alignment explanation
Indices: 22388183--22388265 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
22388173 TCGATCGGTC
* * *
22388183 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
22388209 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
22388236 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
22388263 AAC
1 AAC
22388266 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:22388495 original size:27 final size:27
Alignment explanation
Indices: 22388465--22388660 Score: 117
Period size: 27 Copynumber: 7.3 Consensus size: 27
22388455 GGGCAAAATG
*
22388465 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTTTACCCTACAAGGGTATCTCA
* * * **
22388492 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTTTACCCTACAAGGGTATCTCA
**
22388519 GT-ATTTCTACCCTACAAGGGTAT-TTT
1 GTAATTT-TACCCTACAAGGGTATCTCA
* * * **
22388545 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTTTACCCTACAAGGGTATCTCA
* ** * *
22388573 GTAATTCTATTCTATAAGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATCTCA
* * * *
22388600 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATCTCA
* * * *
22388627 GAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATCTCA
*
22388654 GTTATTT
1 GTAATTT
22388661 CACAATCAAG
Statistics
Matches: 139, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 6 0.04
27 127 0.91
28 6 0.04
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATCTCA
Found at i:22388511 original size:54 final size:53
Alignment explanation
Indices: 22388463--22388655 Score: 217
Period size: 54 Copynumber: 3.6 Consensus size: 53
22388453 AGGGGCAAAA
*
22388463 TGGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTAT-TCAGTAATTCTACCCTACAGGGGTATTT
**
22388517 TGGT-ATTTCTACCCTACAAGGGTATTTTGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTT-TACCCTACAAGGGTATTCAG-TAATTCTACCCTACAGGGGTATTT
* ** * *
22388571 TGGTAATTCTATTCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTA-TTCAGTAATTCTACCCTACAGGGGTATTT
** * * *
22388625 CAGAAATTCTACCCTACAGGGGTATTTCAGT
1 TGGTAATTTTACCCTACAAGGGTA-TTCAGT
22388656 TATTTCACAA
Statistics
Matches: 118, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
53 6 0.05
54 106 0.90
55 6 0.05
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (53 bp):
TGGTAATTTTACCCTACAAGGGTATTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:22389225 original size:27 final size:27
Alignment explanation
Indices: 22388664--22389208 Score: 767
Period size: 27 Copynumber: 20.2 Consensus size: 27
22388654 GTTATTTCAC
*
22388664 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
22388691 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
22388718 AA-CTGAGAGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
22388745 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
22388772 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
22388799 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
22388826 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
22388853 AATCGAGGATAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
22388880 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
22388907 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
22388934 AATTGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
22388961 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
22388988 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
22389015 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
22389042 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
22389069 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
22389096 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
22389123 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
22389150 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
22389177 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
22389204 AATCG
1 AATCG
22389209 GGAGTACTTT
Statistics
Matches: 467, Mismatches: 43, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
26 4 0.01
27 460 0.99
28 3 0.01
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:22391357 original size:39 final size:39
Alignment explanation
Indices: 22391314--22391515 Score: 332
Period size: 39 Copynumber: 5.2 Consensus size: 39
22391304 GGACTTTAGC
* * * *
22391314 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
22391353 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
22391392 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
22391431 CCAGATATAATTCCAGCACATAGCCTGTGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
22391470 CTGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
22391509 CCGGATA
1 CCGGATA
22391516 CACATCAAAT
Statistics
Matches: 151, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 151 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:22400935 original size:28 final size:28
Alignment explanation
Indices: 22400876--22400955 Score: 97
Period size: 28 Copynumber: 2.9 Consensus size: 28
22400866 CACACTGTCG
* * * *
22400876 TTGCTGTCACACGTCATTGTCACCGTCG
1 TTGCTGTCGCACGTCGTTGTCACCGCCA
*
22400904 TTGCTGTCGCACGTCGTTGTCACTGCCA
1 TTGCTGTCGCACGTCGTTGTCACCGCCA
* *
22400932 TTGCTATCGCACGTTGTTGTCACC
1 TTGCTGTCGCACGTCGTTGTCACC
22400956 ACCTCACATT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.12, C:0.31, G:0.23, T:0.34
Consensus pattern (28 bp):
TTGCTGTCGCACGTCGTTGTCACCGCCA
Found at i:22408814 original size:25 final size:25
Alignment explanation
Indices: 22408780--22408828 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
22408770 TATGTATCTG
22408780 AGATAGTGAGACTGCAAGGGGTACC
1 AGATAGTGAGACTGCAAGGGGTACC
22408805 AGATAGTGAGACTGCAAGGGGTAC
1 AGATAGTGAGACTGCAAGGGGTAC
22408829 TAGTTTCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.37, T:0.16
Consensus pattern (25 bp):
AGATAGTGAGACTGCAAGGGGTACC
Found at i:22410779 original size:41 final size:41
Alignment explanation
Indices: 22410734--22410899 Score: 228
Period size: 41 Copynumber: 4.1 Consensus size: 41
22410724 AAAGCCTAGT
* * *
22410734 ATAATACACTGGCATAGAGCCTGCTAGGCAATAGGCCTGAA
1 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAA
* *
22410775 ATAATACGCCAGCATAAAGCCTGCTAGGCAATAAGCCTGAA
1 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAA
*
22410816 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAT
1 ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAA
* * *
22410857 ATAATTCACTGGCATAAAGCTTGCTAGGC-ATAAAGCCT-AA
1 ATAATACACCGGCATAAAGCCTGCTAGGCAAT-AAGCCTGAA
22410897 ATA
1 ATA
22410900 TCACTGATAC
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
40 6 0.05
41 106 0.95
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (41 bp):
ATAATACACCGGCATAAAGCCTGCTAGGCAATAAGCCTGAA
Found at i:22429292 original size:40 final size:40
Alignment explanation
Indices: 22429233--22429440 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
22429223 CAATTGAATG
* * * *
22429233 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
22429273 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
22429313 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
22429353 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * **
22429393 CTATCCGGGCTAAGACCCGAAGGCGTTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
22429433 ATATCCGG
1 ATATCCGG
22429441 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 135 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:22429371 original size:80 final size:80
Alignment explanation
Indices: 22429235--22429440 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
22429225 ATTGAATGAT
* * ** * * *
22429235 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
22429299 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
22429315 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
22429380 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* * *
22429395 ATCCGGGCTAAGACCCGAAGGCGTTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
22429441 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 102 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:22432031 original size:41 final size:41
Alignment explanation
Indices: 22431986--22432199 Score: 247
Period size: 41 Copynumber: 5.3 Consensus size: 41
22431976 GTATTAAAAG
22431986 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * * *
22432027 GAAGGGCTTTTGAGCCAGTGTCATAA-CCGAACCTAGTTTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
* * *
22432067 GAAGGGC-CTTCAGGCCAATGTCATAATCCGAGCTTGGTCTC
1 GAAGGGCTTTTGA-GCCAGTGTCATAATCCGAGCTTGGTCTC
* * *
22432108 GAAGGGCTTTTGAGCCAGTGTCATAAT-CGA-ATCTAGTTTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCT-TGGTCTC
* * * * *
22432148 GAAGGGCCTTCGGGCCAATGTCATAATCCGACCTTGGTCTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
22432189 GAAGGGCTTTT
1 GAAGGGCTTTT
22432200 TGAGTCAGGG
Statistics
Matches: 141, Mismatches: 26, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
39 4 0.03
40 60 0.43
41 73 0.52
42 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (41 bp):
GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTCTC
Found at i:22432121 original size:81 final size:81
Alignment explanation
Indices: 22431999--22432199 Score: 357
Period size: 81 Copynumber: 2.5 Consensus size: 81
22431989 GGGCTTTTGA
*
22431999 GCCAGTGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGT
1 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGT
22432064 TTCGAAGGGCCTTCAG
66 TTCGAAGGGCCTTCAG
* *
22432080 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCGAATCTAGT
1 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGT
*
22432145 TTCGAAGGGCCTTCGG
66 TTCGAAGGGCCTTCAG
*
22432161 GCCAATGTCATAATCCGACCTTGGTCTCGAAGGGCTTTT
1 GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTT
22432200 TGAGTCAGGG
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 115 1.00
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (81 bp):
GCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAACCGAACCTAGT
TTCGAAGGGCCTTCAG
Found at i:22438601 original size:77 final size:79
Alignment explanation
Indices: 22438486--22438667 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
22438476 AATGTTCGAG
22438486 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
22438550 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
22438564 TGATATCCGGGCTAAGCCC-AAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
22438628 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
22438642 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
22438668 GTTTGAACGA
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
77 33 0.36
78 51 0.55
79 3 0.03
80 5 0.05
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:22438606 original size:38 final size:39
Alignment explanation
Indices: 22438485--22438627 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
22438475 GAATGTTCGA
22438485 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
22438524 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
22438563 ATGATATCCGGGCTAAGCCC-AAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
22438601 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
22438628 CTTTGTGCGG
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
38 31 0.33
39 57 0.61
40 5 0.05
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:22440614 original size:40 final size:40
Alignment explanation
Indices: 22440569--22440698 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
22440559 CGGAATATAA
22440569 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
22440609 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
22440649 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
22440689 CCGGATATAA
1 CCGGATATAA
22440699 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22440713 original size:40 final size:39
Alignment explanation
Indices: 22440585--22440735 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
22440575 ATAACCATGT
* * *
22440585 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
22440625 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
22440665 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
22440704 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
22440736 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:22440719 original size:80 final size:79
Alignment explanation
Indices: 22440569--22440735 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
22440559 CGGAATATAA
*
22440569 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
22440634 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
22440649 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
22440711 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
22440728 CCGGATAT
1 CCGGATAT
22440736 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:22449806 original size:39 final size:38
Alignment explanation
Indices: 22449751--22449892 Score: 205
Period size: 39 Copynumber: 3.7 Consensus size: 38
22449741 GAATGTTCGA
22449751 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAATT
* * *
22449789 GTTGATACCCGGGCTAAGCCCGAAGGCAATTGCG-AGTT
1 G-TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAATT
*
22449827 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATT
*
22449866 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
22449893 CTTTGTGCGG
Statistics
Matches: 91, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
37 30 0.33
38 4 0.04
39 48 0.53
40 9 0.10
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (38 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAATT
Found at i:22449818 original size:31 final size:32
Alignment explanation
Indices: 22449783--22449858 Score: 91
Period size: 37 Copynumber: 2.2 Consensus size: 32
22449773 AGGCAATTGT
22449783 GCAATTGT-TGATACCCGGGCTAAGCCCGAAG
1 GCAATTGTATGATACCCGGGCTAAGCCCGAAG
*
22449814 GCAATTGCGAGTTATGATATCCGGGCTAAGCCCGAAG
1 GCAATT----G-TATGATACCCGGGCTAAGCCCGAAG
22449851 GCAATTGT
1 GCAATTGT
22449859 GCAAATTGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
31 6 0.16
32 1 0.03
33 1 0.03
35 1 0.03
36 1 0.03
37 28 0.74
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (32 bp):
GCAATTGTATGATACCCGGGCTAAGCCCGAAG
Found at i:22457986 original size:77 final size:78
Alignment explanation
Indices: 22457871--22458025 Score: 249
Period size: 77 Copynumber: 2.0 Consensus size: 78
22457861 AATGTTCGAG
22457871 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCA
22457936 ATTGTGCGAGTTA
66 ATTGTGCGAGTTA
* * * *
22457949 TGATATCCGGGCTAAGCCC-AAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCGAAGGCC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCA
* *
22458013 TTTGTGCGGGTTA
66 ATTGTGCGAGTTA
22458026 CCATAACGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
77 52 0.73
78 19 0.27
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGTTA
Found at i:22458019 original size:39 final size:39
Alignment explanation
Indices: 22457870--22458011 Score: 223
Period size: 39 Copynumber: 3.7 Consensus size: 39
22457860 GAATGTTCGA
22457870 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
22457909 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
22457948 ATGATATCCGGGCTAAGCCC-AAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
22457986 GTGATATCCGGGTTAAGTCCGAAGGC
1 GTGATATCCGGGCTAAGCCCGAAGGC
22458012 CTTTGTGCGG
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 33 0.36
39 59 0.64
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:22458049 original size:77 final size:77
Alignment explanation
Indices: 22457873--22458049 Score: 221
Period size: 77 Copynumber: 2.3 Consensus size: 77
22457863 TGTTCGAGTG
*
22457873 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCAAT
1 ATATACGGGCTAAG-CCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCAAT
**
22457938 TGTGCGAGTTATG
65 TGTGCGAGTTACC
* * * * * **
22457951 ATATCCGGGCTAAGCCCAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCGAAGGCCTTT
1 ATATACGGGCTAAGCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCAATT
*
22458016 GTGCGGGTTACC
66 GTGCGAGTTACC
*
22458028 ATA-ACGGGCTATGTCCGAAGGC
1 ATATACGGGCTAAG-CCGAAGGC
22458050 GTTTGAACGA
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
76 8 0.09
77 64 0.74
78 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (77 bp):
ATATACGGGCTAAGCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGCCCGAAGGCAATT
GTGCGAGTTACC
Found at i:22459985 original size:40 final size:40
Alignment explanation
Indices: 22459940--22460067 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
22459930 CGGAATATAA
22459940 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
22459980 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
22460020 CCGG--ATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
22460058 CCGGATATAA
1 CCGGATATAA
22460068 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
38 30 0.42
40 40 0.56
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22460088 original size:78 final size:77
Alignment explanation
Indices: 22459955--22460103 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 77
22459945 TATAACCATG
*
22459955 TGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 TGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGC
22460020 CCGGATAGCCACT
65 CCGGATAGCCACT
* * ** * *
22460033 TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAG
1 TGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAG
22460096 CCCGGATA
64 CCCGGATA
22460104 TCATTCAATT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
77 16 0.26
78 46 0.74
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (77 bp):
TGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCC
CGGATAGCCACT
Found at i:22469160 original size:39 final size:39
Alignment explanation
Indices: 22469106--22469249 Score: 216
Period size: 39 Copynumber: 3.7 Consensus size: 39
22469096 GAATGTTCGA
22469106 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
22469145 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
22469184 ATGATATACGGGCTAAGCCCAAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
22469223 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
22469250 CTTTGTGCGG
Statistics
Matches: 91, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 83 0.91
40 8 0.09
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:22469199 original size:78 final size:79
Alignment explanation
Indices: 22469107--22469289 Score: 244
Period size: 78 Copynumber: 2.3 Consensus size: 79
22469097 AATGTTCGAG
*
22469107 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATACGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
22469171 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* * *
22469185 TGATATACGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATACGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
22469250 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** *
22469264 CCATA-ACCGGGCTATGTCCCGAAGGC
1 TGATATA-CGGGCTAAG-CCCGAAGGC
22469290 GTTTGAACGA
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 52 0.57
79 31 0.34
80 8 0.09
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATACGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:22472769 original size:40 final size:41
Alignment explanation
Indices: 22472712--22472843 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 41
22472702 GTATTAAAAG
22472712 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTTTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTTTC
* * *
22472753 GAAGGG-TTTTGAGCCAGTGTCATAA-CCGAACCTAGTTTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTTTC
* * * * * *
22472792 GAAGGGCCTTCGGGCCAATGTCATAATTCGAGCTTGGTCTC
1 GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTTTC
22472833 GAAGGGCTTTT
1 GAAGGGCTTTT
22472844 TGAGTCAGCG
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 17 0.23
40 34 0.45
41 24 0.32
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (41 bp):
GAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGTTTC
Found at i:22477565 original size:25 final size:25
Alignment explanation
Indices: 22477509--22477566 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
22477499 AAATACTCTT
**
22477509 ATGAGCTTCCTGTTATACAACATGG
1 ATGAGCTTCCTGTTATACAACATAC
* * *
22477534 ATAAGCTTCCTGTTATACAGCTTAC
1 ATGAGCTTCCTGTTATACAACATAC
22477559 ATGAGCTT
1 ATGAGCTT
22477567 TCCATTGTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (25 bp):
ATGAGCTTCCTGTTATACAACATAC
Found at i:22478063 original size:45 final size:45
Alignment explanation
Indices: 22477959--22478091 Score: 232
Period size: 44 Copynumber: 3.0 Consensus size: 45
22477949 TTATATGAAC
**
22477959 TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTCATTTTT
1 TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTTT
22478004 TT-CTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTTT
1 TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTTT
*
22478048 TTACTAAGCATTAAATGCTTACTTTATTTCATTTCCTTTGTTTT
1 TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTT
22478092 ATAGTACTTT
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
44 42 0.50
45 42 0.50
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.53
Consensus pattern (45 bp):
TTACTAAGCATTAAATGCTTACTCTATTTCATTTCCTTTGTTTTT
Found at i:22488767 original size:13 final size:13
Alignment explanation
Indices: 22488749--22488775 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22488739 GCTCGTATGG
22488749 TCATCTTGAACCA
1 TCATCTTGAACCA
22488762 TCATCTTGAACCA
1 TCATCTTGAACCA
22488775 T
1 T
22488776 ATGCTCAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (13 bp):
TCATCTTGAACCA
Found at i:22489991 original size:16 final size:16
Alignment explanation
Indices: 22489970--22490000 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22489960 CATTTCAACA
22489970 ATGTTACGAAAACATG
1 ATGTTACGAAAACATG
*
22489986 ATGTTATGAAAACAT
1 ATGTTACGAAAACAT
22490001 ATATCATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.29
Consensus pattern (16 bp):
ATGTTACGAAAACATG
Done.