Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 79 of 425
Found at i:22498620 original size:59 final size:60
Alignment explanation
Indices: 22498524--22498656 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
22498514 GACAAGATTG
* * *
22498524 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
22498584 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
22498643 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22498657 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:22498668 original size:29 final size:29
Alignment explanation
Indices: 22498554--22498656 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
22498544 AAAATTGTAC
*
22498554 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22498583 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
22498613 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22498642 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22498657 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22504899 original size:18 final size:19
Alignment explanation
Indices: 22504878--22504913 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
22504868 AATAAAGAAA
*
22504878 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
22504896 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
22504914 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:22506323 original size:59 final size:60
Alignment explanation
Indices: 22506227--22506359 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
22506217 GACAAGATTG
* * *
22506227 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
22506287 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
22506346 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22506360 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:22506371 original size:29 final size:29
Alignment explanation
Indices: 22506257--22506359 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
22506247 AAAATTGTAC
*
22506257 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22506286 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
22506316 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22506345 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22506360 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22508462 original size:43 final size:43
Alignment explanation
Indices: 22508415--22508498 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
22508405 AAATCATATA
* *
22508415 ACAATGCCAATGTCCCAAACATGGTTTTACACGTAATCACAAT
1 ACAATGCCAATGTCCCAAACATGGTCTTACACATAATCACAAT
* *
22508458 ACAATGCCAATGTCCCAGACATGGTCTTACATATAATCACA
1 ACAATGCCAATGTCCCAAACATGGTCTTACACATAATCACA
22508499 TCTCGGTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.25
Consensus pattern (43 bp):
ACAATGCCAATGTCCCAAACATGGTCTTACACATAATCACAAT
Found at i:22515380 original size:5 final size:5
Alignment explanation
Indices: 22515370--22515409 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
22515360 TCTCTTGAAC
*
22515370 TTTAT TTTAT TTTA- TTTAT GTTAT TTTAT TTTAT TGTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT
22515410 AAAAACCCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
4 4 0.13
5 23 0.74
6 4 0.13
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:22515387 original size:14 final size:14
Alignment explanation
Indices: 22515370--22515400 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
22515360 TCTCTTGAAC
*
22515370 TTTATTTTATTTTA
1 TTTATGTTATTTTA
22515384 TTTATGTTATTTTA
1 TTTATGTTATTTTA
22515398 TTT
1 TTT
22515401 TATTGTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTATGTTATTTTA
Found at i:22518363 original size:20 final size:20
Alignment explanation
Indices: 22518334--22518385 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
22518324 CCCGCCCATA
*
22518334 AACGAACTCGGACTCAACTC
1 AACGAGCTCGGACTCAACTC
22518354 AACGAGCTCGGACTCAACTC
1 AACGAGCTCGGACTCAACTC
22518374 AACGAGCTCGGA
1 AACGAGCTCGGA
22518386 TGCCTAGTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.33, G:0.21, T:0.13
Consensus pattern (20 bp):
AACGAGCTCGGACTCAACTC
Found at i:22523699 original size:59 final size:58
Alignment explanation
Indices: 22523603--22523734 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
22523593 AAAATTGTAC
22523603 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
22523661 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
22523720 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22523735 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22523723 original size:88 final size:89
Alignment explanation
Indices: 22523573--22523734 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
22523563 GACAAGATTG
* * *
22523573 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
22523638 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
22523662 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
22523726 AAGTGTGCG
66 AAGTGTGCG
22523735 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:22523746 original size:29 final size:29
Alignment explanation
Indices: 22523603--22523734 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
22523593 AAAATTGTAC
*
22523603 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22523632 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22523661 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
22523691 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22523720 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22523735 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22531677 original size:59 final size:58
Alignment explanation
Indices: 22531581--22531712 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
22531571 AAAATTGTAC
22531581 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
22531639 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
22531698 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22531713 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22531701 original size:88 final size:89
Alignment explanation
Indices: 22531551--22531712 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
22531541 GACAAGATTG
* * *
22531551 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
22531616 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
22531640 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
22531704 AAGTGTGCG
66 AAGTGTGCG
22531713 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:22531724 original size:29 final size:29
Alignment explanation
Indices: 22531581--22531712 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
22531571 AAAATTGTAC
*
22531581 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22531610 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22531639 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
22531669 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22531698 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22531713 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22532887 original size:25 final size:26
Alignment explanation
Indices: 22532857--22532910 Score: 101
Period size: 25 Copynumber: 2.1 Consensus size: 26
22532847 AAATAAATCA
22532857 GGATGGATATATGAGT-CAGTTTCAG
1 GGATGGATATATGAGTCCAGTTTCAG
22532882 GGATGGATATATGAGTCCAGTTTCAG
1 GGATGGATATATGAGTCCAGTTTCAG
22532908 GGA
1 GGA
22532911 AAATTTACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (26 bp):
GGATGGATATATGAGTCCAGTTTCAG
Found at i:22539652 original size:59 final size:58
Alignment explanation
Indices: 22539524--22539687 Score: 247
Period size: 59 Copynumber: 2.8 Consensus size: 58
22539514 GTGACAAGAT
* * * * *
22539524 TAGCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATA
1 TAGCACTAAGTGTGCGAG-CTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATA
*
22539584 TAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATTATA
1 TAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAACTGAAAA-TATA
22539643 TAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 TAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
22539688 GATTCACTAT
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
58 26 0.27
59 54 0.56
60 17 0.18
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (58 bp):
TAGCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATA
Found at i:22539674 original size:88 final size:89
Alignment explanation
Indices: 22539524--22539687 Score: 267
Period size: 88 Copynumber: 1.9 Consensus size: 89
22539514 GTGACAAGAT
* * *
22539524 TAGCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCA
1 TAGCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCA
22539589 CTAAGTGTGCGAGCTGAAAATATA
66 CTAAGTGTGCGAGCTGAAAATATA
* * *
22539613 TAGCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCA
1 TAGCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCA
22539677 CTAAGTGTGCG
66 CTAAGTGTGCG
22539688 GATTCACTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.75
89 17 0.25
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (89 bp):
TAGCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCA
CTAAGTGTGCGAGCTGAAAATATA
Found at i:22539699 original size:29 final size:29
Alignment explanation
Indices: 22539524--22539687 Score: 247
Period size: 29 Copynumber: 5.6 Consensus size: 29
22539514 GTGACAAGAT
* * * *
22539524 TAGCACTAAGTGTGCGGGTTTAAAAATTGTA
1 TAGCACTAAGTGTGCGAG-CTGAAAA-TATA
* *
22539555 CAGCACTAAGTGTGCGAACTGAAAATATA
1 TAGCACTAAGTGTGCGAGCTGAAAATATA
22539584 TAGCACTAAGTGTGCGAGCTGAAAATATA
1 TAGCACTAAGTGTGCGAGCTGAAAATATA
22539613 TAGCACTAAGTGTGCGAGCTGAAAATTATA
1 TAGCACTAAGTGTGCGAGCTGAAAA-TATA
22539643 TAGCACTAAGTGTGCGAGCTGAAAATATA
1 TAGCACTAAGTGTGCGAGCTGAAAATATA
22539672 TAGCACTAAGTGTGCG
1 TAGCACTAAGTGTGCG
22539688 GATTCACTAT
Statistics
Matches: 124, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
29 75 0.60
30 34 0.27
31 15 0.12
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (29 bp):
TAGCACTAAGTGTGCGAGCTGAAAATATA
Found at i:22546136 original size:41 final size:41
Alignment explanation
Indices: 22545932--22546153 Score: 284
Period size: 39 Copynumber: 5.5 Consensus size: 41
22545922 ACCCAAGTAT
*
22545932 CTTCGGGATTTAG-CCGGATATAGCAACT-CGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTACGCACAAATGC
* **
22545971 CTTC-GGTCTTAGCCCGGATATAGTC-ACTA-GCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTACGCACAAATGC
22546010 CTTC-GGACTTAGCCCGGATATAGTC-ACTA-GCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTACGCACAAATGC
*
22546049 CTT-GGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA--CGCACAAATGC
22546091 CTTCGGGACTTAGCCCGG-TATAGCAACTACTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAC-GCACAAATGC
22546132 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
22546154 CATCCGAATA
Statistics
Matches: 164, Mismatches: 8, Indels: 19
0.86 0.04 0.10
Matches are distributed among these distances:
38 7 0.04
39 86 0.52
40 2 0.01
41 28 0.17
42 27 0.16
43 14 0.09
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTACGCACAAATGC
Found at i:22551565 original size:14 final size:14
Alignment explanation
Indices: 22551531--22551559 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22551521 AATAGATTTA
22551531 ACTATACTAAAATG
1 ACTATACTAAAATG
22551545 ACTATACTAAAATG
1 ACTATACTAAAATG
22551559 A
1 A
22551560 TCATACATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (14 bp):
ACTATACTAAAATG
Found at i:22554379 original size:20 final size:20
Alignment explanation
Indices: 22554350--22554390 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
22554340 TAGTGGTATC
*
22554350 AGAGCTAGGTTCAAGACTCG
1 AGAGCCAGGTTCAAGACTCG
22554370 AGAGCCAGGTTCAAGACTCG
1 AGAGCCAGGTTCAAGACTCG
22554390 A
1 A
22554391 CTGTGAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.22, G:0.29, T:0.17
Consensus pattern (20 bp):
AGAGCCAGGTTCAAGACTCG
Found at i:22556777 original size:40 final size:40
Alignment explanation
Indices: 22556703--22556844 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
22556693 AACCCAAGTA
* * *
22556703 CCTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
22556742 CCTTCAGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
22556782 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
22556822 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
22556845 CATTCGAATA
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 11 0.12
40 80 0.87
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:22559573 original size:13 final size:13
Alignment explanation
Indices: 22559555--22559581 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22559545 TACGAGTTCC
22559555 TAGTAATGCCATT
1 TAGTAATGCCATT
22559568 TAGTAATGCCATT
1 TAGTAATGCCATT
22559581 T
1 T
22559582 GGACTGACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TAGTAATGCCATT
Found at i:22565149 original size:48 final size:48
Alignment explanation
Indices: 22565093--22565412 Score: 274
Period size: 48 Copynumber: 6.7 Consensus size: 48
22565083 TGATATGTGT
* *
22565093 GCCAGTGTAAAACCATGTCTGGGACATGGCGTCGGCCACGATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGTGAGA
* * * * * *
22565141 GCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCGATGTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGTGAGA
* * * * * * *
22565189 GCTAGTGTAAGACCATGTGTGGGACATGGCATCAG-CATTGATATGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATGTGAGA
* * * * **
22565237 GACAGTGTAAGACGATGTCTAGGACATGGCATCGGCCACAACATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGTGAGA
* * * * *
22565285 GCCAATGTAAGACCATGT-TGGAATATGGCATCGG-CATTGA-GACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATG-TGAGA
* *
22565332 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGT-A-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACG--ATGTGAGA
* * *
22565380 GCTAGTGTAAGACCATGTTTGGAACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
22565413 AGTAATTCAC
Statistics
Matches: 215, Mismatches: 48, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
46 2 0.01
47 35 0.16
48 172 0.80
49 4 0.02
50 1 0.00
51 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGTGAGA
Found at i:22565387 original size:143 final size:144
Alignment explanation
Indices: 22565095--22565412 Score: 385
Period size: 143 Copynumber: 2.2 Consensus size: 144
22565085 ATATGTGTGC
* * * * ** * *
22565095 CAGTGTAAAACCATGTCTGGGACATGGCGTCGGCCACGATGTGAGAGCCAGTGTAAGACTATGTT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACAACATGAGAGCCAATGTAAGACCATGTT
* * *
22565160 TGGAACATGGCATCGGCGATGTTGTGAGAGCTAGTGTAAGACCATGTGTGGGACATGGCATCAGC
66 TGGAACATGGCATCGGCGATGTAGCGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
* * **
22565225 ATTGATATGTGCGA
131 ATCGACATGTAAGA
*
22565239 CAGTGTAAGACGATGTCTAGGACATGGCATCGGCCACAACATGAGAGCCAATGTAAGACCATG-T
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACAACATGAGAGCCAATGTAAGACCATGTT
* *
22565303 TGGAATATGGCATCGGC-AT-TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
66 TGGAACATGGCATCGGCGATGT-AG-CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
*
22565366 GCCTCGACATGTAAG-
129 GCATCGACATGTAAGA
*
22565381 CTAGTGTAAGACCATGT-TTGGAACATGGCATC
1 C-AGTGTAAGACCATGTCTAGG-ACATGGCATC
22565413 AGTAATTCAC
Statistics
Matches: 149, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
141 1 0.01
142 7 0.05
143 87 0.58
144 54 0.36
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (144 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACAACATGAGAGCCAATGTAAGACCATGTT
TGGAACATGGCATCGGCGATGTAGCGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
ATCGACATGTAAGA
Found at i:22566960 original size:18 final size:18
Alignment explanation
Indices: 22566919--22566960 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
22566909 AAACTACAAC
* * *
22566919 TCATCAAAACTCAGTTTT
1 TCATAAAAACTAAGGTTT
22566937 TC-TAAAAACTAAGGTTT
1 TCATAAAAACTAAGGTTT
22566954 TCATAAA
1 TCATAAA
22566961 TAAAAATGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (18 bp):
TCATAAAAACTAAGGTTT
Found at i:22573931 original size:40 final size:39
Alignment explanation
Indices: 22573887--22574079 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
22573877 GTTCAAAACA
* * ** * *
22573887 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
22573927 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
22573967 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
22574006 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
22574045 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
22574080 TTCATACACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:22573998 original size:39 final size:39
Alignment explanation
Indices: 22573917--22574079 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
22573907 TATGGTAACC
* *
22573917 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
22573957 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
22573996 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
22574035 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
22574074 CGCACA
1 CGCACA
22574080 TTCATACACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:22580057 original size:40 final size:39
Alignment explanation
Indices: 22580013--22580205 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
22580003 GTTCAAAACA
* * ** * *
22580013 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
22580053 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
22580093 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
22580132 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
22580171 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
22580206 TTCATACACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:22580124 original size:39 final size:39
Alignment explanation
Indices: 22580043--22580205 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
22580033 TATGGTAACC
* *
22580043 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
22580083 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
22580122 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
22580161 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
22580200 CGCACA
1 CGCACA
22580206 TTCATACACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:22588982 original size:24 final size:24
Alignment explanation
Indices: 22588951--22589037 Score: 95
Period size: 24 Copynumber: 3.6 Consensus size: 24
22588941 TTACTCATTT
*
22588951 GCACACATAGTGCCACGT-TTCCTC
1 GCACACATAGTGCCACGTAAT-CTC
* *
22588975 GCACACATAGTGCTATGTAATCTC
1 GCACACATAGTGCCACGTAATCTC
* * *
22588999 GCACACATAGTGCCACGTAGTTTTT
1 GCACACATAGTGCCACGTA-ATCTC
22589024 GCACACATAGTGCC
1 GCACACATAGTGCC
22589038 TGTGACAGCC
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
24 36 0.68
25 17 0.32
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCCACGTAATCTC
Found at i:22590947 original size:29 final size:28
Alignment explanation
Indices: 22590845--22590948 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 28
22590835 GTGACAAGAT
*
22590845 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
*
22590874 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
22590903 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
22590932 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
22590949 AATCGATTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:22590982 original size:57 final size:57
Alignment explanation
Indices: 22590847--22590982 Score: 152
Period size: 58 Copynumber: 2.4 Consensus size: 57
22590837 GACAAGATTG
* * * *
22590847 GCACTAAGTGTGC-AAGCTTGAAATATATGGCACTAAGTGTGCGAACTTAAATTATATG
1 GCACTATGTGTGCGAA-CTT-AAATACATGGCACTAAGTGTGCGAACATAAATTATATA
* **
22590905 GCACTATGTGTGCGAGCTTAAATCACATGGCACTAAGTGTGCGAA-ATCGATTAT-TAA
1 GCACTATGTGTGCGAACTTAAAT-ACATGGCACTAAGTGTGCGAACATAAATTATAT-A
22590962 GCACTATGTGTGCGAACTTAA
1 GCACTATGTGTGCGAACTTAA
22590983 TGTATATATC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
56 1 0.01
57 30 0.45
58 35 0.52
59 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (57 bp):
GCACTATGTGTGCGAACTTAAATACATGGCACTAAGTGTGCGAACATAAATTATATA
Found at i:22599063 original size:29 final size:28
Alignment explanation
Indices: 22599029--22599130 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 28
22599019 GTGACAAGAT
22599029 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCAAGCTT-AAATATA
22599058 TGGCACTAAGTGTGCGAA-CTTAAATTATA
1 TGGCACTAAGTGTGC-AAGCTTAAA-TATA
* * * *
22599087 TGGCACTATGTGTACGAGCTTAAATCACA
1 TGGCACTAAGTGTGCAAGCTTAAAT-ATA
22599116 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
22599131 GAAATCGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
28 5 0.08
29 56 0.89
30 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCAAGCTTAAATATA
Found at i:22599166 original size:57 final size:57
Alignment explanation
Indices: 22599031--22599166 Score: 143
Period size: 58 Copynumber: 2.4 Consensus size: 57
22599021 GACAAGATTG
* * * *
22599031 GCACTAAGTGTGC-AAGCTTGAAATATATGGCACTAAGTGTGCGAACTTAAATTATATG
1 GCACTATGTGTGCGAA-CTT-AAATACATGGCACTAAGTGTGCGAACATAAATTATATA
* * **
22599089 GCACTATGTGTACGAGCTTAAATCACATGGCACTAAGTGTGCGAA-ATCGATTAT-TAA
1 GCACTATGTGTGCGAACTTAAAT-ACATGGCACTAAGTGTGCGAACATAAATTATAT-A
22599146 GCACTATGTGTGCGAACTTAA
1 GCACTATGTGTGCGAACTTAA
22599167 TGTATATATC
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
56 1 0.02
57 29 0.45
58 34 0.52
59 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (57 bp):
GCACTATGTGTGCGAACTTAAATACATGGCACTAAGTGTGCGAACATAAATTATATA
Found at i:22605266 original size:46 final size:47
Alignment explanation
Indices: 22605190--22605345 Score: 206
Period size: 47 Copynumber: 3.3 Consensus size: 47
22605180 CTATGGTCTT
* * **
22605190 GCACATATCACACACCGAAGCCATAGCCCAGCCATGGTCTTACAC-GAA
1 GCACATAT--CACACCGATGCCATATCCCAGATATGGTCTTACACAGAA
* *
22605238 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTACACAGAA
1 GCACATATCACACCGATGCCATATCCCAGATATGGTCTTACACAGAA
* *
22605285 GCACATATCACACCGATGCCATATCCCAGATATGGTCTTATACGGAA
1 GCACATATCACACCGATGCCATATCCCAGATATGGTCTTACACAGAA
*
22605332 GCTCATATCACACC
1 GCACATATCACACC
22605346 TTGCCAGGGT
Statistics
Matches: 96, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
46 30 0.31
47 59 0.61
48 7 0.07
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.21
Consensus pattern (47 bp):
GCACATATCACACCGATGCCATATCCCAGATATGGTCTTACACAGAA
Found at i:22624476 original size:11 final size:11
Alignment explanation
Indices: 22624460--22624534 Score: 72
Period size: 11 Copynumber: 7.4 Consensus size: 11
22624450 GGGTTTATGT
22624460 ATGATATGCAC
1 ATGATATGCAC
*
22624471 ATGATATG--T
1 ATGATATGCAC
22624480 ATGATATGCAC
1 ATGATATGCAC
* *
22624491 ATGACATG--T
1 ATGATATGCAC
22624500 ATGATATGCAC
1 ATGATATGCAC
*
22624511 ATGATATG--T
1 ATGATATGCAC
22624520 ATGATATGCAC
1 ATGATATGCAC
22624531 ATGA
1 ATGA
22624535 GATGTTCATA
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 23 0.46
11 27 0.54
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:22624480 original size:20 final size:20
Alignment explanation
Indices: 22624455--22624539 Score: 152
Period size: 20 Copynumber: 4.2 Consensus size: 20
22624445 CCCTAGGGTT
22624455 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
22624475 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
22624495 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
22624515 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
22624535 GATGT
1 TATGT
22624540 TCATAAATGC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:22624483 original size:9 final size:9
Alignment explanation
Indices: 22624455--22624527 Score: 56
Period size: 9 Copynumber: 7.4 Consensus size: 9
22624445 CCCTAGGGTT
22624455 TATGTATGA
1 TATGTATGA
*
22624464 TATGCACATGA
1 TATG--TATGA
22624475 TATGTATGA
1 TATGTATGA
*
22624484 TATGCACATGA
1 TATG--TATGA
*
22624495 CATGTATGA
1 TATGTATGA
*
22624504 TATGCACATGA
1 TATG--TATGA
22624515 TATGTATGA
1 TATGTATGA
22624524 TATG
1 TATG
22624528 CACATGAGAT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 27 0.54
11 23 0.46
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.36
Consensus pattern (9 bp):
TATGTATGA
Found at i:22624641 original size:24 final size:24
Alignment explanation
Indices: 22624584--22624750 Score: 225
Period size: 24 Copynumber: 7.0 Consensus size: 24
22624574 GGAGGAAGTG
22624584 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
22624608 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
22624631 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
22624655 -TAAAGGGCTTACGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
22624678 CAAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
22624703 C-AAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
22624726 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
22624751 ATGATAAAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
23 44 0.35
24 70 0.55
25 13 0.10
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:22624653 original size:47 final size:47
Alignment explanation
Indices: 22624584--22624750 Score: 264
Period size: 47 Copynumber: 3.5 Consensus size: 47
22624574 GGAGGAAGTG
22624584 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
22624631 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTACGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
22624678 CAAAAGGGCTTATGCCCCAGTTATTCAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT
* *
22624726 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
22624751 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
47 71 0.63
48 30 0.27
49 11 0.10
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:22639723 original size:17 final size:18
Alignment explanation
Indices: 22639681--22639729 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
22639671 AGTTGAAAAG
22639681 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
22639700 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
22639717 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
22639730 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:22640610 original size:40 final size:40
Alignment explanation
Indices: 22640544--22640710 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
22640534 AAATTGAATG
* * *
22640544 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
22640583 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
22640623 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
22640663 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
22640703 ATATCCGG
1 ATATCCGG
22640711 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:22647718 original size:17 final size:18
Alignment explanation
Indices: 22647676--22647724 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
22647666 AGTTGAAAAG
22647676 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
22647695 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
22647712 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
22647725 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:22648606 original size:40 final size:40
Alignment explanation
Indices: 22648540--22648706 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
22648530 AAATTGAATG
* * *
22648540 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
22648579 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
22648619 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
22648659 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
22648699 ATATCCGG
1 ATATCCGG
22648707 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:22655534 original size:18 final size:18
Alignment explanation
Indices: 22655511--22655551 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
22655501 CACTTTTCTA
*
22655511 ATCATCCCTCATTCACTC
1 ATCATCCCTCACTCACTC
*
22655529 ATCATCCCTCACTCATTC
1 ATCATCCCTCACTCACTC
22655547 ATCAT
1 ATCAT
22655552 TCTCTCCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.34
Consensus pattern (18 bp):
ATCATCCCTCACTCACTC
Found at i:22665016 original size:29 final size:28
Alignment explanation
Indices: 22664914--22665016 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
22664904 CTGACAAGAT
*
22664914 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
*
22664943 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
22664972 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
22665001 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
22665017 TGATCGATTA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
28 4 0.06
29 62 0.94
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:22668890 original size:53 final size:53
Alignment explanation
Indices: 22668804--22668927 Score: 223
Period size: 53 Copynumber: 2.4 Consensus size: 53
22668794 GATGATGAAA
*
22668804 AAAGAAAAAGAA-AGAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
22668856 AAAGAAAAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
*
22668909 AAAGAAAAAGAAGGAAAAA
1 AAAGAAAAAGAAGAAAAAA
22668928 GAGCTTTGAG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
52 12 0.17
53 57 0.83
ACGTcount: A:0.53, C:0.10, G:0.21, T:0.16
Consensus pattern (53 bp):
AAAGAAAAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
Found at i:22670939 original size:40 final size:39
Alignment explanation
Indices: 22670774--22670957 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
22670764 AATTGAATTG
* * *
22670774 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
22670814 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
22670854 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
22670894 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
22670933 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
22670958 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:22670982 original size:80 final size:81
Alignment explanation
Indices: 22670814--22671002 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
22670804 GCTGGAAATT
* * * *
22670814 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
22670879 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
22670895 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
22670958 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
22670974 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
22671003 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:22673569 original size:40 final size:40
Alignment explanation
Indices: 22673371--22673571 Score: 237
Period size: 40 Copynumber: 5.0 Consensus size: 40
22673361 CGGATGATAA
* * *
22673371 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTA-TAT
* * *
22673411 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAGTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
* *
22673451 CCGGGCTAACTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
*
22673491 CCGGGCTAAGTCCCGAAGGCATTTGTA-CAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGAGTTACTATAT
* * * *
22673531 CCGGGCTATGTCCTGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATAT
22673571 C
1 C
22673572 TAGTTCAATC
Statistics
Matches: 141, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 138 0.98
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
Found at i:22684865 original size:28 final size:28
Alignment explanation
Indices: 22684833--22684902 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
22684823 AATGAGATTG
*
22684833 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
22684861 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
22684889 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22684903 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:22699627 original size:40 final size:40
Alignment explanation
Indices: 22699568--22699698 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
22699558 CGGGACTTTA
* * *
22699568 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
22699608 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
22699648 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
22699688 CCCGGATATAA
1 CCCGGATATAA
22699699 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:22699731 original size:39 final size:40
Alignment explanation
Indices: 22699585--22699735 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
22699575 ATCACGATTT
* * * *
22699585 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
22699625 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
22699665 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
22699704 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
22699736 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:22701867 original size:59 final size:58
Alignment explanation
Indices: 22701771--22701902 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
22701761 AAAATTGTAC
22701771 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
22701829 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
22701888 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22701903 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22701914 original size:29 final size:29
Alignment explanation
Indices: 22701771--22701902 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
22701761 AAAATTGTAC
*
22701771 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22701800 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22701829 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
22701859 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22701888 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22701903 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22711140 original size:19 final size:19
Alignment explanation
Indices: 22711105--22711142 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
22711095 TTGCAATTTA
*
22711105 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
22711124 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
22711143 TCTGACATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:22715826 original size:40 final size:40
Alignment explanation
Indices: 22715726--22715988 Score: 343
Period size: 40 Copynumber: 6.6 Consensus size: 40
22715716 TATTCGAATG
* * *
22715726 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACT
* * * * * *
22715767 ATAACCGGACTAA-ATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGACT
*
22715806 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
22715846 ATATCCGGGCTAA-ACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
*
22715885 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
* * * *
22715925 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
22715965 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22715989 CTTGTGCAAG
Statistics
Matches: 197, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 54 0.27
40 132 0.67
41 11 0.06
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
Found at i:22715903 original size:79 final size:79
Alignment explanation
Indices: 22715726--22715988 Score: 357
Period size: 79 Copynumber: 3.3 Consensus size: 79
22715716 TATTCGAATG
* * * * * *
22715726 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAACCCGAAGGCA
* *
22715791 TTCGTGCGAGTTG-CT
65 TTTGTGCTAG-TGACT
*
22715806 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAACCCGAAGGCAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAACCCGAAGGCAT
* *
22715871 TTGTGCTAGCGATT
66 TTGTGCTAGTGACT
* *
22715885 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAA-ACCCGAAGGCA
* *
22715950 TTTATGCTAGTGACC
65 TTTGTGCTAGTGACT
22715965 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22715989 CTTGTGCAAG
Statistics
Matches: 162, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
78 1 0.01
79 85 0.52
80 76 0.47
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAACCCGAAGGCAT
TTGTGCTAGTGACT
Found at i:22715952 original size:119 final size:118
Alignment explanation
Indices: 22715726--22716024 Score: 354
Period size: 119 Copynumber: 2.5 Consensus size: 118
22715716 TATTCGAATG
* * * * *
22715726 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACT-AAATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTA-G-GATTATATCCGGGCTAAAACCCGAAGGC
* * **
22715790 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
63 ATTCGTGCGAGTCGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
22715846 ATATCCGGGCTAA-ACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAG-GATTATATCCGGGCTAAAACCCGAAGGCA
* * * *
22715910 TTTGTGCTAG-CGACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
64 TTCGTGCGAGTCG-CTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
* * * *
22715965 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGGA-TTATATCCGGGCTAAAACCCGAAG
22716025 ATTACTTGAG
Statistics
Matches: 156, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
118 29 0.19
119 104 0.67
120 23 0.15
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (118 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGGATTATATCCGGGCTAAAACCCGAAGGCATT
CGTGCGAGTCGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
Found at i:22716010 original size:79 final size:80
Alignment explanation
Indices: 22715726--22716024 Score: 349
Period size: 79 Copynumber: 3.8 Consensus size: 80
22715716 TATTCGAATG
* * * * * *
22715726 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGCGACTATATCCGGGCTAAATCCCGAAGGC
* *
22715790 ATTCGTGCGAGTTG-CT
65 ATTTGTGCTAG-TGACT
* *
22715806 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAA-CCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGCGACTATATCCGGGCTAAATCCCGAAGGCA
* *
22715870 TTTGTGCTAGCGATT
66 TTTGTGCTAGTGACT
* * *
22715885 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGCGACTATATCCGGGCTAAATCCCGAAGGCA
* *
22715950 TTTATGCTAGTGACC
66 TTTGTGCTAGTGACT
* * *
22715965 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-TAGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGCGA-CTATATCCGGGCTAAATCCCGAAG
22716025 ATTACTTGAG
Statistics
Matches: 190, Mismatches: 25, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
78 16 0.08
79 100 0.53
80 74 0.39
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGCGACTATATCCGGGCTAAATCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:22723997 original size:40 final size:40
Alignment explanation
Indices: 22723915--22724177 Score: 253
Period size: 40 Copynumber: 6.6 Consensus size: 40
22723905 TATTCGAATG
* * * *
22723915 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* *
22723955 ATAAT-CGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 AT-ATCCGGACTAAGACCCGAAGGCATTTGTGCGAG-TGACT
* * * *
22723995 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
22724035 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
22724075 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
22724115 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
* *
22724155 ACAT-CGGGCTAAGACCCGAAGGC
1 ATATCCGGACTAAGACCCGAAGGC
22724178 CTTGTGCAAG
Statistics
Matches: 198, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 21 0.11
40 173 0.87
41 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:22724055 original size:80 final size:80
Alignment explanation
Indices: 22723915--22724177 Score: 343
Period size: 80 Copynumber: 3.3 Consensus size: 80
22723905 TATTCGAATG
* * * * *
22723915 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATAAT-CGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTAT-ATCCGGGCTAAGACCCGAAGGC
* *
22723979 ATTCGTGCGAGTTG-CT
65 ATTTGTGCTAG-TGACT
* *
22723995 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGACCCGAAGGCA
* *
22724060 TTTGTGCTAGCGATT
66 TTTGTGCTAGTGACT
* *
22724075 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGACCCGAAGGCA
* *
22724140 TTTATGCTAGTGACC
66 TTTGTGCTAGTGACT
*
22724155 ACAT-CGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22724178 CTTGTGCAAG
Statistics
Matches: 160, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
79 21 0.13
80 139 0.87
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:22724128 original size:120 final size:120
Alignment explanation
Indices: 22723915--22724177 Score: 334
Period size: 120 Copynumber: 2.2 Consensus size: 120
22723905 TATTCGAATG
* * * * *
22723915 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATAATCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATAATCGGACTAAAACCCGAAGGCA
* * **
22723980 TTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 TTCGTGCGAGTCGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
* * *
22724035 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGATTAT-ATCCGGGCTAAAACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATAAT-CGGACTAAAACCCGAAGGC
* * * *
22724099 ATTTGTGCTAG-CGACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
65 ATTCGTGCGAGTCG-CTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
*
22724155 ACAT-CGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22724178 CTTGTGCAAG
Statistics
Matches: 123, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
119 21 0.17
120 102 0.83
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATAATCGGACTAAAACCCGAAGGCA
TTCGTGCGAGTCGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACC
Found at i:22728206 original size:14 final size:14
Alignment explanation
Indices: 22728187--22728216 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22728177 TTATGTTTTG
22728187 TTATCTCTATGCTT
1 TTATCTCTATGCTT
*
22728201 TTATCTTTATGCTT
1 TTATCTCTATGCTT
22728215 TT
1 TT
22728217 GAGATGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63
Consensus pattern (14 bp):
TTATCTCTATGCTT
Found at i:22733141 original size:40 final size:40
Alignment explanation
Indices: 22733097--22733173 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
22733087 TAGTGCCACA
* * *
22733097 TATAGCTGAAGCTATTCCAATTCGCACAGTTAGTGCTATT
1 TATAGCCGAAGCTATTCCAAATCGCACACTTAGTGCTATT
* *
22733137 TATAGCCGAAGCTATTTCAAATCGTACACTTAGTGCT
1 TATAGCCGAAGCTATTCCAAATCGCACACTTAGTGCT
22733174 GAACATAGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (40 bp):
TATAGCCGAAGCTATTCCAAATCGCACACTTAGTGCTATT
Found at i:22734093 original size:20 final size:20
Alignment explanation
Indices: 22734068--22734105 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22734058 ATCCAAATCA
*
22734068 AATAGGCACTTTTAACATAT
1 AATAGGCAATTTTAACATAT
*
22734088 AATAGGCAATTTTTACAT
1 AATAGGCAATTTTAACAT
22734106 TTTACGCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (20 bp):
AATAGGCAATTTTAACATAT
Found at i:22736720 original size:42 final size:42
Alignment explanation
Indices: 22736658--22736751 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
22736648 AGATTACGTG
* *
22736658 TAAGACCATATCTAGTATATGGAATCAG-TATAAGACTTCATA
1 TAAGACCATATCTAGGATATGAAAT-AGATATAAGACTTCATA
* * * *
22736700 TAAGACCATATCTAGGATATGAAATTGATATGAGATTTCATG
1 TAAGACCATATCTAGGATATGAAATAGATATAAGACTTCATA
22736742 TAAGACCATA
1 TAAGACCATA
22736752 GCTGGGCTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 44 0.98
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (42 bp):
TAAGACCATATCTAGGATATGAAATAGATATAAGACTTCATA
Found at i:22736925 original size:22 final size:22
Alignment explanation
Indices: 22736900--22736944 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
22736890 TAAAGAAGAT
22736900 AAAGAGCATGTAAGTATTACGA
1 AAAGAGCATGTAAGTATTACGA
22736922 AAAGAGCATGTAAGTATTACGA
1 AAAGAGCATGTAAGTATTACGA
22736944 A
1 A
22736945 CTTGTACAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.09, G:0.22, T:0.22
Consensus pattern (22 bp):
AAAGAGCATGTAAGTATTACGA
Found at i:22740712 original size:33 final size:31
Alignment explanation
Indices: 22740660--22740722 Score: 74
Period size: 33 Copynumber: 2.0 Consensus size: 31
22740650 TCGTCCACAA
* *
22740660 CTCTCATTCCCTCTCTTTTCTTTTCTTTTTC
1 CTCTCATTCCCTCTCTTTTCTCTCCTTTTTC
22740691 CTCTCATCTCCACTC-CATTTTCTCTCCTTTTT
1 CTCTCAT-TCC-CTCTC-TTTTCTCTCCTTTTT
22740723 GACAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 7 0.26
32 4 0.15
33 16 0.59
ACGTcount: A:0.06, C:0.38, G:0.00, T:0.56
Consensus pattern (31 bp):
CTCTCATTCCCTCTCTTTTCTCTCCTTTTTC
Found at i:22742111 original size:21 final size:22
Alignment explanation
Indices: 22742067--22742118 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
22742057 AATGTGGAAG
22742067 TTATGTGGTAGTTTATCTGCAA
1 TTATGTGGTAGTTTATCTGCAA
*
22742089 TTATGTGGTCGTTT-T-TGGCAA
1 TTATGTGGTAGTTTATCT-GCAA
22742110 TTATGTGGT
1 TTATGTGGT
22742119 GGCTTGTCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 1 0.04
21 14 0.50
22 13 0.46
ACGTcount: A:0.17, C:0.08, G:0.27, T:0.48
Consensus pattern (22 bp):
TTATGTGGTAGTTTATCTGCAA
Found at i:22748139 original size:40 final size:40
Alignment explanation
Indices: 22748095--22748227 Score: 133
Period size: 40 Copynumber: 3.3 Consensus size: 40
22748085 GCATTTTTTC
* * *
22748095 AAAAACGCCGCAATAGGTGACGCATTAACAGCGGTTTCCT
1 AAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTACT
* * * * *
22748135 AAAAACGCCGCAAAAAGTTCAAGCATTAGCGGCGTTTTAAC-
1 AAAAACGCCGC-AATAGGTGACGCATTAGCGGCGGTTT-ACT
* * * *
22748176 AAAAACGCCGCAATGGGTGACGTATTAGCGGTGGTTTTCT
1 AAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTACT
22748216 AAAAACGCCGCA
1 AAAAACGCCGCA
22748228 GAAGTGTACG
Statistics
Matches: 73, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
39 1 0.01
40 41 0.56
41 30 0.41
42 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (40 bp):
AAAAACGCCGCAATAGGTGACGCATTAGCGGCGGTTTACT
Found at i:22748179 original size:81 final size:81
Alignment explanation
Indices: 22748055--22748227 Score: 231
Period size: 81 Copynumber: 2.1 Consensus size: 81
22748045 CGTTTTTGGT
* * **
22748055 AAAACGCCACAACAAATTCAAGCATTAGTGGCATTTTTTCAAAAACGCCGCAATAGGTGACGCAT
1 AAAACGCCGCAACAAATTCAAGCATTAGCGGCATTTTAACAAAAACGCCGCAATAGGTGACGCAT
22748120 TAACAGCGGTTTCCTA
66 TAACAGCGGTTTCCTA
* * *
22748136 AAAACGCCGCAA-AAAGTTCAAGCATTAGCGGCGTTTTAACAAAAACGCCGCAATGGGTGACGTA
1 AAAACGCCGCAACAAA-TTCAAGCATTAGCGGCATTTTAACAAAAACGCCGCAATAGGTGACGCA
* * * *
22748200 TTAGCGGTGGTTTTCTA
65 TTAACAGCGGTTTCCTA
22748217 AAAACGCCGCA
1 AAAACGCCGCA
22748228 GAAGTGTACG
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 3 0.04
81 77 0.96
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.22
Consensus pattern (81 bp):
AAAACGCCGCAACAAATTCAAGCATTAGCGGCATTTTAACAAAAACGCCGCAATAGGTGACGCAT
TAACAGCGGTTTCCTA
Found at i:22748180 original size:41 final size:40
Alignment explanation
Indices: 22748055--22748188 Score: 110
Period size: 41 Copynumber: 3.3 Consensus size: 40
22748045 CGTTTTTGGT
* * * *
22748055 AAAACGCCACAACAAA-TTCAAGCATTAGTGGCATTTTTTCA
1 AAAACGCCGCAA-AAAGTTCAAGCATTAGCGGC-GTTTTACA
* * * * * * * *
22748096 AAAACGCCGC-AATAGGTGACGCATTAACAGCGGTTTCCTA
1 AAAACGCCGCAAAAAGTTCAAGCATTAGCGGCGTTTTAC-A
22748136 AAAACGCCGCAAAAAGTTCAAGCATTAGCGGCGTTTTAACA
1 AAAACGCCGCAAAAAGTTCAAGCATTAGCGGCGTTTT-ACA
22748177 AAAACGCCGCAA
1 AAAACGCCGCAA
22748189 TGGGTGACGT
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
39 6 0.09
40 22 0.31
41 41 0.59
42 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (40 bp):
AAAACGCCGCAAAAAGTTCAAGCATTAGCGGCGTTTTACA
Found at i:22749083 original size:15 final size:15
Alignment explanation
Indices: 22749063--22749094 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22749053 TTTAATTTAG
22749063 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
22749078 AAGATAAATATATAT
1 AAGATAAATATAAAT
22749093 AA
1 AA
22749095 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:22754430 original size:19 final size:19
Alignment explanation
Indices: 22754401--22754444 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
22754391 ACGAAAAATA
22754401 ATTTT-AATATTTTATTTT
1 ATTTTAAATATTTTATTTT
22754419 ATTTTAAATATTTTATTTT
1 ATTTTAAATATTTTATTTT
22754438 ATTTTAA
1 ATTTTAA
22754445 CATTACCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTAAATATTTTATTTT
Found at i:22754441 original size:118 final size:117
Alignment explanation
Indices: 22754311--22754542 Score: 385
Period size: 118 Copynumber: 2.0 Consensus size: 117
22754301 TTTTCTTCTC
* *
22754311 TTTTATTTTATTTTCAA-ATTATCTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATT
1 TTTTATTTTATTTT-AACATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATT
* *
22754375 TTATTTTTTTTGAATCACGAAAAATAATTTTAATATTTTATTTTATTTTAAATA
65 TCA-TTTTTTTGAATCACGAAAAATAATTTCAATATTTTATTTTATTTTAAATA
* *
22754429 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTT
22754494 CATTTTTTTGAATCACGAAAAATAATTTCAATATTTTATTTTATTTTAA
66 CATTTTTTTGAATCACGAAAAATAATTTCAATATTTTATTTTATTTTAA
22754543 CATTACCTAA
Statistics
Matches: 107, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
117 48 0.45
118 59 0.55
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.55
Consensus pattern (117 bp):
TTTTATTTTATTTTAACATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTT
CATTTTTTTGAATCACGAAAAATAATTTCAATATTTTATTTTATTTTAAATA
Found at i:22754711 original size:9 final size:9
Alignment explanation
Indices: 22754697--22754860 Score: 101
Period size: 9 Copynumber: 18.1 Consensus size: 9
22754687 CCAGCAACTC
22754697 ACATAATTT
1 ACATAATTT
22754706 ACATAATTT
1 ACATAATTT
*
22754715 ACATGA--T
1 ACATAATTT
*
22754722 ACATAACTT
1 ACATAATTT
22754731 ACATAATTT
1 ACATAATTT
*
22754740 AAAGTTCGAATTT
1 ACA--T--AATTT
*
22754753 -CATAACTT
1 ACATAATTT
22754761 ACATAATTT
1 ACATAATTT
*
22754770 ACATAACTT
1 ACATAATTT
22754779 ACATAA--T
1 ACATAATTT
*
22754786 ACATAACTT
1 ACATAATTT
22754795 ACATAA--T
1 ACATAATTT
* *
22754802 ACATGACTT
1 ACATAATTT
22754811 ACATAATTT
1 ACATAATTT
*
22754820 AAAGATCAAATTT
1 --ACAT--AATTT
*
22754833 -CATAACTT
1 ACATAATTT
22754841 ACATAATTT
1 ACATAATTT
22754850 ACATAAATTT
1 ACAT-AATTT
22754860 A
1 A
22754861 ACACACATGG
Statistics
Matches: 123, Mismatches: 15, Indels: 33
0.72 0.09 0.19
Matches are distributed among these distances:
7 19 0.15
8 8 0.07
9 72 0.59
10 9 0.07
11 4 0.03
12 1 0.01
13 10 0.08
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (9 bp):
ACATAATTT
Found at i:22754790 original size:16 final size:16
Alignment explanation
Indices: 22754705--22754817 Score: 106
Period size: 16 Copynumber: 7.1 Consensus size: 16
22754695 TCACATAATT
* *
22754705 TACATAATTTACATGA
1 TACATAACTTACATAA
22754721 TACATAACTTACATAA
1 TACATAACTTACATAA
** * *
22754737 TTTA-AAGTT-CGA-AT
1 TACATAACTTAC-ATAA
*
22754751 TTCATAACTTACATAA
1 TACATAACTTACATAA
22754767 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
22754785 TACATAACTTACATAA
1 TACATAACTTACATAA
*
22754801 TACATGACTTACATAA
1 TACATAACTTACATAA
22754817 T
1 T
22754818 TTAAAGATCA
Statistics
Matches: 80, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
14 5 0.06
15 10 0.12
16 50 0.62
18 15 0.19
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.36
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:22754791 original size:80 final size:80
Alignment explanation
Indices: 22754705--22754855 Score: 257
Period size: 80 Copynumber: 1.9 Consensus size: 80
22754695 TCACATAATT
* * * *
22754705 TACATAATTTACATGATACATAACTTACATAATTTAAAGTTCGAATTTCATAACTTACATAATTT
1 TACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATTT
22754770 ACATAACTTACATAA
66 ACATAACTTACATAA
*
22754785 TACATAACTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATTT
1 TACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATTT
22754850 ACATAA
66 ACATAA
22754856 ATTTAACACA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.36
Consensus pattern (80 bp):
TACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATTT
ACATAACTTACATAA
Found at i:22754813 original size:25 final size:25
Alignment explanation
Indices: 22754757--22754816 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
22754747 GAATTTCATA
*
22754757 ACTTACATAATTTACATAACTTACAT
1 ACTTACATAACTTACATAAC-TACAT
*
22754783 A-ATACATAACTTACATAA-TACAT
1 ACTTACATAACTTACATAACTACAT
22754806 GACTTACATAA
1 -ACTTACATAA
22754817 TTTAAAGATC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 5 0.17
24 1 0.03
25 22 0.76
26 1 0.03
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (25 bp):
ACTTACATAACTTACATAACTACAT
Found at i:22755008 original size:9 final size:9
Alignment explanation
Indices: 22754990--22755059 Score: 65
Period size: 9 Copynumber: 8.0 Consensus size: 9
22754980 GTACATAATG
22754990 CATAACTTA
1 CATAACTTA
*
22754999 CATAATTTA
1 CATAACTTA
22755008 CATAACTTA
1 CATAACTTA
22755017 CATAA--TA
1 CATAACTTA
*
22755024 CATAA-ATA
1 CATAACTTA
* * *
22755032 TATATCATA
1 CATAACTTA
22755041 TCATAACTTA
1 -CATAACTTA
22755051 CATAACTTA
1 CATAACTTA
22755060 ATTATACTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
7 7 0.14
8 5 0.10
9 33 0.65
10 6 0.12
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:22755019 original size:34 final size:34
Alignment explanation
Indices: 22754981--22755055 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
22754971 CTTTATGTCG
* * *
22754981 TACATAATGCATAACT-TACATAATTTACATAACT
1 TACATAATACATAAATATACATAATAT-CATAACT
* *
22755015 TACATAATACATAAATATATATCATATCATAACT
1 TACATAATACATAAATATACATAATATCATAACT
22755049 TACATAA
1 TACATAA
22755056 CTTAATTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 28 0.80
35 7 0.20
ACGTcount: A:0.48, C:0.16, G:0.01, T:0.35
Consensus pattern (34 bp):
TACATAATACATAAATATACATAATATCATAACT
Found at i:22759942 original size:17 final size:19
Alignment explanation
Indices: 22759922--22759959 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22759912 TTCTTTCAAA
22759922 TATT-AATAA-ATTTCTAC
1 TATTAAATAATATTTCTAC
*
22759939 TATTAAATAATATTTTTAC
1 TATTAAATAATATTTCTAC
22759958 TA
1 TA
22759960 GTTTATTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 5 0.28
19 9 0.50
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAAATAATATTTCTAC
Found at i:22760870 original size:31 final size:31
Alignment explanation
Indices: 22760832--22760897 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
22760822 TATATTTTTT
* *
22760832 ATGCTATATTTACTGTTTTTGGTTGGATTTC
1 ATGCTATATTTACTGTTTTTGGTTGAATTTA
*
22760863 ATGCTATATTTGCTGTTTTTGGTTGAATTTA
1 ATGCTATATTTACTGTTTTTGGTTGAATTTA
22760894 ATGC
1 ATGC
22760898 AGGGAGGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.18, C:0.09, G:0.20, T:0.53
Consensus pattern (31 bp):
ATGCTATATTTACTGTTTTTGGTTGAATTTA
Found at i:22761929 original size:16 final size:16
Alignment explanation
Indices: 22761910--22761944 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
22761900 AACCTAACCC
*
22761910 AAAAAAAA-ACAAAGA
1 AAAAAAAAGAAAAAGA
22761925 AAAAAAAAGAAAAAGA
1 AAAAAAAAGAAAAAGA
22761941 AAAA
1 AAAA
22761945 CTTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.89, C:0.03, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAAGA
Found at i:22761959 original size:16 final size:17
Alignment explanation
Indices: 22761940--22761977 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
22761930 AAAGAAAAAG
*
22761940 AAAAACTTA-CCCCAAA
1 AAAAACTAACCCCCAAA
*
22761956 AAAACCTAACCCCCAAA
1 AAAAACTAACCCCCAAA
22761973 AAAAA
1 AAAAA
22761978 GAAGAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAACTAACCCCCAAA
Found at i:22762578 original size:2 final size:2
Alignment explanation
Indices: 22762573--22762597 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22762563 TCTTAAATAC
22762573 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
22762598 TTTTAAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22762597 original size:35 final size:34
Alignment explanation
Indices: 22762547--22762612 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 34
22762537 ATTTCTTATG
* *
22762547 TATATTATGTATATATTCTTAAATACTATATATA
1 TATATTATATATATATTCTTAAATACCATATATA
*
22762581 TATATATATATATATATTTTTAAATACCATAT
1 TATAT-TATATATATATTCTTAAATACCATAT
22762613 TGTGTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 5 0.18
35 23 0.82
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (34 bp):
TATATTATATATATATTCTTAAATACCATATATA
Found at i:22762706 original size:2 final size:2
Alignment explanation
Indices: 22762694--22762741 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
22762684 TTTTATGTAC
* *
22762694 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22762736 AT AT AT
1 AT AT AT
22762742 TTGTACATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22764607 original size:12 final size:12
Alignment explanation
Indices: 22764590--22764625 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
22764580 ATTCATTTGA
22764590 CATTCATGCATT
1 CATTCATGCATT
22764602 CATTCATGCATT
1 CATTCATGCATT
*
22764614 CATTCATACATT
1 CATTCATGCATT
22764626 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:22770008 original size:71 final size:71
Alignment explanation
Indices: 22769821--22770043 Score: 308
Period size: 70 Copynumber: 3.1 Consensus size: 71
22769811 GAGTTAAGCC
* * *
22769821 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCT
22769886 GAGGTAT
65 GAGGTAT
* * ** *
22769893 TTTCAATTTTTGTGTTT--TAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGT
1 TTTTAATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGACACGC
22769955 TGAGGTAT
64 TGAGGTAT
*
22769963 TTTTAATTGTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTG
22770028 AGGTAT
66 AGGTAT
*
22770034 TTTTAGTTTT
1 TTTTAATTTT
22770044 AAATTGACTC
Statistics
Matches: 130, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
69 4 0.03
70 55 0.42
71 55 0.42
72 16 0.12
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.38
Consensus pattern (71 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTG
AGGTAT
Found at i:22770110 original size:257 final size:257
Alignment explanation
Indices: 22769654--22770503 Score: 1549
Period size: 257 Copynumber: 3.3 Consensus size: 257
22769644 TTTCAAGGAA
22769654 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
22769719 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
22769784 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
22769849 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
22769911 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
22769976 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
22770041 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
22770106 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
*
22770168 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
*
22770233 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
22770298 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
22770363 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
22770428 TTT
255 TTT
* * * * *
22770431 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATT-TC
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGT-
22770495 TGTTTTCAA
63 TGTTTTCAA
22770504 TTTACGTTGT
Statistics
Matches: 577, Mismatches: 7, Indels: 10
0.97 0.01 0.02
Matches are distributed among these distances:
257 377 0.65
260 2 0.00
262 4 0.01
263 131 0.23
264 1 0.00
265 62 0.11
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:22770287 original size:71 final size:69
Alignment explanation
Indices: 22770078--22770341 Score: 332
Period size: 71 Copynumber: 3.7 Consensus size: 69
22770068 GAGTTAAGCC
* *
22770078 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
22770143 GAGGTAT
63 GAGGTAT
* * ** * *
22770150 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
22770214 AGGTAT
64 AGGTAT
22770220 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
22770285 AGGTAT
64 AGGTAT
* * ** * *
22770291 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
22770342 TTTAATTTTT
Statistics
Matches: 167, Mismatches: 20, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
69 35 0.21
70 56 0.34
71 60 0.36
72 16 0.10
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:22770386 original size:122 final size:124
Alignment explanation
Indices: 22770220--22770466 Score: 392
Period size: 122 Copynumber: 2.0 Consensus size: 124
22770210 GTTGAGGTAT
22770220 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
22770285 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
22770341 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
22770406 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
22770466 T
1 T
22770467 CAGGTCACGC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
121 12 0.11
122 60 0.53
123 1 0.01
124 13 0.11
125 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:22770462 original size:72 final size:71
Alignment explanation
Indices: 22770341--22770781 Score: 297
Period size: 72 Copynumber: 6.1 Consensus size: 71
22770331 GAGTTAAGCC
*
22770341 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
22770405 TGAGGTA
65 TGAGGTA
** * *
22770412 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
22770477 TGAGGTA
65 TGAGGTA
* * ** * * * * ** * *** *
22770484 TTTTCAATTTCTG-TTTT-CAATTTACGT--TGTT-CAAGA-ATCAACTCATATTGCGAGAGGTA
1 TTTTCAATTTTTGTTTTTAAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-CG-G-GGCA
* * ***
22770543 GGTTGA-ACC
62 CGCTGAGGTA
** * * *
22770552 TTTT-AATTTCTACTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACG
1 TTTTCAATTT-TTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
22770616 CTGAGGTA
64 CTGAGGTA
* **** *
22770624 ATTTCAATTTCTATTGTCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTCAA-TT-T-TTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
22770689 GCTGAGGTA
63 GCTGAGGTA
* ** * * **
22770698 TTTTCAATTTTTATGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GGCAC
*
22770763 GCCGAGGTA
63 GCTGAGGTA
22770772 TTTTCAATTT
1 TTTTCAATTT
22770782 CCGTTTTTCA
Statistics
Matches: 270, Mismatches: 79, Indels: 39
0.70 0.20 0.10
Matches are distributed among these distances:
66 5 0.02
67 10 0.04
68 8 0.03
69 13 0.05
70 6 0.02
71 18 0.07
72 109 0.40
73 15 0.06
74 83 0.31
75 3 0.01
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTA
Found at i:22770692 original size:74 final size:72
Alignment explanation
Indices: 22770571--22770782 Score: 253
Period size: 74 Copynumber: 2.9 Consensus size: 72
22770561 CTACTTTTTC
* * *
22770571 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCT
22770636 ATTGTCAAA
66 A-TGT-AAA
* * *
22770645 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCT
***
22770710 ATGTTTT
66 ATGTAAA
** * * * *
22770717 AATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACGCTGAGGTATTTTCAATTT
22770782 C
64 C
22770783 CGTTTTTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
72 32 0.27
73 5 0.04
74 81 0.69
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (72 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCT
ATGTAAA
Found at i:22770791 original size:14 final size:14
Alignment explanation
Indices: 22770772--22770806 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
22770762 CGCCGAGGTA
22770772 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
22770786 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
22770800 CTTTCAA
1 TTTTCAA
22770807 AAAAAATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:22770943 original size:76 final size:76
Alignment explanation
Indices: 22770786--22771478 Score: 321
Period size: 72 Copynumber: 8.8 Consensus size: 76
22770776 CAATTTCCGT
* *
22770786 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
* *
22770851 ACGCTGAGGTA
66 ACACCGAGGTA
* * *
22770862 ATTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--
22770925 ACACACCGAGGTA
64 ACACACCGAGGTA
* * * * * * *
22770938 TTTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAAAA--AA-TCAACTCATAT-TGCGAGAGGT
1 TTTTCAATTTCTGTCTGTCAA-----------AAAAAATCAACTC-A-T-AT-TGCGAGA--GGC
* *
22770999 GAGTTGAGCCTCAGGACACGCTGAGGTA
49 GAGTTGAGCCTCAGGACACACCGAGGTA
* * * *
22771027 ATTTCAATTTCTGT-TGTC-AAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCA-GAT
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA-
22771089 CACACGTCGAGGTA
65 CACAC--CGAGGTA
* ** *
22771103 TTTTCAATTTCCATTTTTCAATTTCTGCCTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
1 TTTTC-A-----A--TTTC--TGTCTG--TCAAAAAAA---ATCAACTCATATTGCGAGAGGCGA
* * *
22771168 GTTGAGCCTCGGGACACGCTGAGGTA
51 GTTGAGCCTCAGGACACACCGAGGTA
* * * *** *
22771194 ATTTCAATTTCTGT-TTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
***
22771255 ACGTTGAGGTA
66 ACACCGAGGTA
* * * * * *
22771266 TTTTTAATTTCTGT-TTTC--AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGG-C
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
* *
22771326 TCATGCGCTGAGCTA
66 ACA--C-C-GAGGTA
* * * *
22771341 TTTTCAATTTCTATCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-GAT
1 TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA-
22771404 CACACACTGAGGTA
65 CACAC-C-GAGGTA
* * * * * * *
22771418 TTTTTTCAATTTATATTTTTC-AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTC
1 --TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTC
22771479 GGGTTACATG
Statistics
Matches: 485, Mismatches: 74, Indels: 113
0.72 0.11 0.17
Matches are distributed among these distances:
71 2 0.00
72 61 0.13
73 34 0.07
74 60 0.12
75 25 0.05
76 59 0.12
77 49 0.10
78 4 0.01
79 59 0.12
80 1 0.00
81 2 0.00
82 1 0.00
83 4 0.01
84 4 0.01
85 1 0.00
86 4 0.01
87 5 0.01
88 4 0.01
89 33 0.07
90 8 0.02
91 27 0.06
93 36 0.07
94 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (76 bp):
TTTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
ACACCGAGGTA
Found at i:22771058 original size:165 final size:165
Alignment explanation
Indices: 22770640--22771282 Score: 931
Period size: 165 Copynumber: 3.9 Consensus size: 165
22770630 ATTTCTATTG
* * * *
22770640 TCAAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
*** *
22770705 TTT-T-TATGT-TTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCG
66 TTTCTGT-TGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCG
*
22770767 AGGTATTTTCAATTTCCGTTTTTCAATTTCTGTCTT
130 AGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTT
22770803 TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
* * *
22770868 ATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACACCG
65 ATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCG
*
22770933 AGGTATTTTCAATTTCCGTTTTTCAATTTTTGCCTT
130 AGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTT
22770969 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
* * * *
22771034 TTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGA
66 TTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGA
*
22771099 GGTATTTTCAATTTCCATTTTTCAATTTCTGCCTT
131 GGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTT
* *
22771134 TAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
1 T--CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* * *** * **
22771199 AATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGTT
64 AATTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
* *
22771260 GAGGTATTTTTAATTTCTGTTTT
129 GAGGTATTTTCAATTTCCGTTTT
22771283 CAAAAAATCA
Statistics
Matches: 440, Mismatches: 34, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
163 28 0.06
164 62 0.14
165 195 0.44
166 83 0.19
167 72 0.16
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (165 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTTGTCAAAAAATTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGA
GGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTT
Found at i:22771241 original size:72 final size:73
Alignment explanation
Indices: 22771139--22771646 Score: 390
Period size: 72 Copynumber: 6.5 Consensus size: 73
22771129 GCCTTTAAAA
*
22771139 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
22771204 CTGTTTTC
66 CTGTTTTC
* ** ** * *
22771212 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
22771276 CTGTTTTC
66 CTGTTTTC
* * * ** *
22771284 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
22771349 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
22771360 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
22771425 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
22771439 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTC-
* *
22771503 AAATCTATTTTTCAAATTCTGTTTT
61 --A---A--TTTC----TGT-TTTC
* * * ** *
22771528 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGAGGTATTTTCAAT
22771593 TTCTGTTTTTTTTTTC
64 TTCTG------TTTTC
22771609 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
22771647 TTTTTAATTT
Statistics
Matches: 344, Mismatches: 54, Indels: 64
0.74 0.12 0.14
Matches are distributed among these distances:
72 64 0.19
73 34 0.10
75 20 0.06
76 5 0.01
77 48 0.14
78 3 0.01
79 64 0.19
80 6 0.02
81 3 0.01
82 7 0.02
83 30 0.09
85 4 0.01
86 2 0.01
88 49 0.14
89 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:22771462 original size:79 final size:76
Alignment explanation
Indices: 22771138--22771856 Score: 411
Period size: 88 Copynumber: 9.0 Consensus size: 76
22771128 TGCCTTTAAA
** *
22771138 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
22771201 TTTCTGTTTTC
66 TTTCTGTTTTC
* ** * * *
22771212 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTTAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
22771273 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
22771284 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
22771348 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
22771360 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
22771425 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
22771439 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
** *
22771503 AAATCTATTTTTC
65 ATTTCT-GTTTTC
* ** * **
22771516 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
22771581 GCTATTTTCAATTTCTGTTTTTTTTTTC
55 GGTATTTTCAATTTCTG------TTTTC
* * * * * *
22771609 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
22771673 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTG-TTTTC
* **
22771696 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
22771757 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
22771771 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
22771836 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
22771857 TAATGTCTGT
Statistics
Matches: 503, Mismatches: 84, Indels: 103
0.73 0.12 0.15
Matches are distributed among these distances:
72 64 0.13
73 32 0.06
75 35 0.07
76 5 0.01
77 65 0.13
78 7 0.01
79 64 0.13
80 2 0.00
81 2 0.00
82 6 0.01
83 30 0.06
84 29 0.06
85 7 0.01
86 2 0.00
87 12 0.02
88 113 0.22
89 8 0.02
90 1 0.00
91 1 0.00
92 13 0.03
93 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:22771664 original size:30 final size:30
Alignment explanation
Indices: 22771628--22771689 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
22771618 CAACTCATAT
22771628 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
22771658 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
22771688 TG
1 TG
22771690 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:22771790 original size:255 final size:249
Alignment explanation
Indices: 22771278--22771857 Score: 748
Period size: 255 Copynumber: 2.3 Consensus size: 249
22771268 TTTAATTTCT
* * *
22771278 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
22771343 TTCAATTTC-----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
* *
22771403 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTG
131 TCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTG
* ** * * * **
22771468 AGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTATTTTTCAAATTCT
195 AGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
* *
22771523 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
22771587 TTCAATTTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTT
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTC
* * * * * * *
22771652 A-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTG
128 AGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTG
* *
22771714 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
22771778 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
22771842 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
22771858 AATGTCTGTT
Statistics
Matches: 290, Mismatches: 29, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
249 13 0.04
250 30 0.10
251 1 0.00
252 3 0.01
253 2 0.01
254 5 0.02
255 145 0.50
256 5 0.02
257 13 0.04
258 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (249 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
TCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGA
GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
Found at i:22772524 original size:17 final size:17
Alignment explanation
Indices: 22772504--22772540 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
22772494 AACCTAACCC
*
22772504 AAAAAAAAA-ACAAAGA
1 AAAAAAAAAGAAAAAGA
22772520 AAAAAAAAAGAAAAAGA
1 AAAAAAAAAGAAAAAGA
22772537 AAAA
1 AAAA
22772541 CTTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAGA
Found at i:22772539 original size:11 final size:11
Alignment explanation
Indices: 22772507--22772540 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
22772497 CTAACCCAAA
22772507 AAAAAAACAAAG
1 AAAAAAA-AAAG
22772519 AAAAAAAAAAG
1 AAAAAAAAAAG
22772530 AAAAAGAAAAA
1 AAAAA-AAAAA
22772541 CTTACCCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:22772556 original size:17 final size:18
Alignment explanation
Indices: 22772531--22772575 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
22772521 AAAAAAAAGA
*
22772531 AAAAGAAAAACTTA-CCCC
1 AAAA-AAAAACTAACCCCC
*
22772549 AAAAAAAACCTAACCCCC
1 AAAAAAAAACTAACCCCC
22772567 AAAAAAAAA
1 AAAAAAAAA
22772576 AAGAAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.64, C:0.27, G:0.02, T:0.07
Consensus pattern (18 bp):
AAAAAAAAACTAACCCCC
Found at i:22773187 original size:24 final size:24
Alignment explanation
Indices: 22773110--22773197 Score: 70
Period size: 24 Copynumber: 3.6 Consensus size: 24
22773100 ATTTTATATA
* * *
22773110 TATTATGTATATATTTTTTAATGC
1 TATTATGTATATATTCTTAAATAC
* ** *
22773134 CATTA-GTTATATATTTCTTATGTATT
1 TATTATG-TATATA-TTCTTAAATA-C
22773160 TATTATGTATATATTCTTAAATAC
1 TATTATGTATATATTCTTAAATAC
*
22773184 TATTATATATATAT
1 TATTATGTATATAT
22773198 ATATATATAT
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
23 1 0.02
24 23 0.48
25 13 0.27
26 10 0.21
27 1 0.02
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (24 bp):
TATTATGTATATATTCTTAAATAC
Found at i:22773192 original size:2 final size:2
Alignment explanation
Indices: 22773187--22773211 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22773177 TAAATACTAT
22773187 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
22773212 TTTAAATACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22773234 original size:37 final size:37
Alignment explanation
Indices: 22773152--22773239 Score: 99
Period size: 37 Copynumber: 2.4 Consensus size: 37
22773142 ATATATTTCT
* * *
22773152 TATGTATTTATTATGTATATATTCTTAAATACTATTA
1 TATGTATATATTATATATATATTCTTAAATACCATTA
*
22773189 TATATATATATATATATATATATT-TTAAATACCA-TA
1 TATGTATATAT-TATATATATATTCTTAAATACCATTA
*
22773225 TTGTGTATATATTAT
1 -TATGTATATATTAT
22773240 TATTACAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
36 5 0.12
37 27 0.63
38 11 0.26
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (37 bp):
TATGTATATATTATATATATATTCTTAAATACCATTA
Found at i:22773319 original size:2 final size:2
Alignment explanation
Indices: 22773307--22773350 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
22773297 TTTTATGTAC
* * *
22773307 AT AT GT AT AT AT AT GT AT AT AT AT AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22773349 AT
1 AT
22773351 TTGTACATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22773331 original size:16 final size:16
Alignment explanation
Indices: 22773307--22773372 Score: 64
Period size: 16 Copynumber: 4.2 Consensus size: 16
22773297 TTTTATGTAC
*
22773307 ATATGTATATATATGT
1 ATATATATATATATGT
**
22773323 ATATATATATATACAT
1 ATATATATATATATGT
*
22773339 ATATATATATATTTGT
1 ATATATATATATATGT
* *
22773355 ACATAT-TAT-TATTT
1 ATATATATATATATGT
22773369 ATAT
1 ATAT
22773373 TATTGTTGTA
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
14 6 0.15
15 3 0.08
16 31 0.77
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.52
Consensus pattern (16 bp):
ATATATATATATATGT
Found at i:22773400 original size:14 final size:15
Alignment explanation
Indices: 22773381--22773409 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22773371 ATTATTGTTG
22773381 TATA-TTTTTATGTA
1 TATATTTTTTATGTA
22773395 TATATTTTTTATGTA
1 TATATTTTTTATGTA
22773410 CGTTTCCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (15 bp):
TATATTTTTTATGTA
Found at i:22774281 original size:2 final size:2
Alignment explanation
Indices: 22774274--22774301 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22774264 CCCAAAACAA
22774274 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22774302 TTCTAGTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22775470 original size:22 final size:21
Alignment explanation
Indices: 22775440--22775486 Score: 51
Period size: 22 Copynumber: 2.1 Consensus size: 21
22775430 ATTTATTTCA
22775440 ATTTAAAAT-CGTTAATAAAAAT
1 ATTTAAAATACGTT--TAAAAAT
*
22775462 ATTTCAAATAGCGTTTAAAAAT
1 ATTTAAAATA-CGTTTAAAAAT
22775484 ATT
1 ATT
22775487 AAATTTCATG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 18 0.82
24 4 0.18
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.38
Consensus pattern (21 bp):
ATTTAAAATACGTTTAAAAAT
Found at i:22775855 original size:2 final size:2
Alignment explanation
Indices: 22775848--22775887 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
22775838 GTCACTAAAT
* *
22775848 TA TA TA TA TA AA TA TA TA TA TA TA TA TA AA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22775888 ATGATTAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:22775871 original size:18 final size:18
Alignment explanation
Indices: 22775848--22775887 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
22775838 GTCACTAAAT
22775848 TATATATATAAATATATA
1 TATATATATAAATATATA
22775866 TATATATATAAATATATA
1 TATATATATAAATATATA
22775884 TATA
1 TATA
22775888 ATGATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TATATATATAAATATATA
Found at i:22776216 original size:3 final size:3
Alignment explanation
Indices: 22776208--22776243 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
22776198 TGGTAGCTGC
22776208 TAT TAT TAT TAT TAT TAT TAT TAT TATT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TA
22776244 CTTGTTCCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:22784484 original size:49 final size:49
Alignment explanation
Indices: 22784382--22784606 Score: 199
Period size: 49 Copynumber: 4.6 Consensus size: 49
22784372 GGGTACGATA
* * * * *
22784382 CCGATGCCATGTTCCAAACATGGTCTTACATTGGC-T-CACACATCTAAG
1 CCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTTCCACACATCGAGG
* **
22784430 TCGATGCCATGTCCCAGACAGGTCTTACACTAACTTCCACACATCGAGG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTCCACACATCGAGG
* * * ***
22784479 CCGATGCCATGTCCCAGACAGGTCGTACACTGGGTCCCATTTATCG-GTG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTCCACACATCGAG-G
** * * * *
22784528 TTGATGCCATGTCACAGACAGTTCTTACACTGGCTTGCATATC-TCGAGG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTCCACA-CATCGAGG
*
22784577 CCGATG-CATGTCCCAGACATGTCTTACACT
1 CCGATGCCATGTCCCAGACAGGTCTTACACT
22784607 AGCTCTTGTC
Statistics
Matches: 140, Mismatches: 32, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
47 11 0.08
48 40 0.29
49 88 0.63
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTCCACACATCGAGG
Done.