Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 80 of 425
Found at i:22784641 original size:46 final size:45
Alignment explanation
Indices: 22784575--22784701 Score: 143
Period size: 46 Copynumber: 2.8 Consensus size: 45
22784565 CATATCTCGA
*
22784575 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTC-TCAA-T
1 GGCCGATGCATGTCCAAGACATGTCTTACACTAGCTC---TCAT-AAGT
* * *
22784622 -GCCGATGCATGTCCTAGACATGTTTTACACTGGCTCTCATAATGT
1 GGCCGATGCATGTCCAAGACATGTCTTACACTAGCTCTCATAA-GT
*
22784667 GGTCGATGCATGTCCAAGACATGTCTTACACTAGC
1 GGCCGATGCATGTCCAAGACATGTCTTACACTAGC
22784702 ACACATACCA
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
43 4 0.06
44 1 0.01
45 1 0.01
46 63 0.91
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (45 bp):
GGCCGATGCATGTCCAAGACATGTCTTACACTAGCTCTCATAAGT
Found at i:22785376 original size:20 final size:20
Alignment explanation
Indices: 22785351--22785391 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
22785341 TCACAATTTC
22785351 ACTTATTTCAC-ACATTTACA
1 ACTTATTTCACAAC-TTTACA
*
22785371 ACTTATTTTACAACTTTACA
1 ACTTATTTCACAACTTTACA
22785391 A
1 A
22785392 AATAGCCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (20 bp):
ACTTATTTCACAACTTTACA
Found at i:22786148 original size:48 final size:48
Alignment explanation
Indices: 22786077--22786236 Score: 196
Period size: 48 Copynumber: 3.3 Consensus size: 48
22786067 CGGGCTATTA
* *
22786077 AAGACCATGTCTGCGACATGGCATCGGCGTTGATATGTGAGCCAGTGT
1 AAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGT
* * *
22786125 AAGACCATGTCTGGGACATGGCATCGGGGTTGATATGTGTGCCAGTGT
1 AAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGT
* * * * * **
22786173 AAGACCATATCTGGGATATAGCTTCAGCGTTGGTATGTGATTTCA-TGT
1 AAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGA-GCCAGTGT
22786221 AAGACCATATCTGGGA
1 AAGACCATATCTGGGA
22786237 TATGTCGTTG
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
48 96 0.98
49 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
AAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGT
Found at i:22786264 original size:42 final size:45
Alignment explanation
Indices: 22786169--22786278 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 45
22786159 ATGTGTGCCA
*
22786169 GTGTAAGACCATATCTGGGATATAGCTTCAGCGTTGGTATGTGATTTC
1 GTGTAAGACCATATCTGGGATATAGC-T-A-CGTTGATATGTGATTTC
*
22786217 ATGTAAGACCATATCTGGGATAT-G-T-CGTTGATATGAT-ATTTC
1 GTGTAAGACCATATCTGGGATATAGCTACGTTGATATG-TGATTTC
* *
22786259 GTGTAAGACAATGTCTGGGA
1 GTGTAAGACCATATCTGGGA
22786279 CATGGCATCG
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
42 31 0.55
43 1 0.02
45 1 0.02
47 1 0.02
48 22 0.39
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (45 bp):
GTGTAAGACCATATCTGGGATATAGCTACGTTGATATGTGATTTC
Found at i:22786292 original size:42 final size:42
Alignment explanation
Indices: 22786206--22786416 Score: 156
Period size: 42 Copynumber: 4.9 Consensus size: 42
22786196 TCAGCGTTGG
* * * * * *
22786206 TATGTGATTTCATGTAAGACCATATCTGGGATATGTCGTTGA
1 TATGAGATTTCATGTAAGACCATGTCTGGGACATGGCATCGA
* * *
22786248 TATGATATTTCGTGTAAGACAATGTCTGGGACATGGCATCGA
1 TATGAGATTTCATGTAAGACCATGTCTGGGACATGGCATCGA
* ** *
22786290 TATGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGAA
1 TATGAGATTTCATGTAAGACCATGTCTGGGACATGGCA-TCG-A
* * * * * *
22786334 CTAACATGAGACTTCGTATAAGACCATATCTGGTATATGGCATCGA
1 -T---ATGAGATTTCATGTAAGACCATGTCTGGGACATGGCATCGA
*
22786380 TATGTAGA-TCCATGTAAGACCATGT-TGGGGACATGGC
1 TATG-AGATTTCATGTAAGACCATGTCT-GGGACATGGC
22786417 TTTGGCATTC
Statistics
Matches: 129, Mismatches: 32, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
41 1 0.01
42 89 0.69
43 5 0.04
44 1 0.01
45 2 0.02
46 1 0.01
47 2 0.02
48 28 0.22
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATGTCTGGGACATGGCATCGA
Found at i:22786350 original size:90 final size:90
Alignment explanation
Indices: 22786256--22786421 Score: 237
Period size: 90 Copynumber: 1.8 Consensus size: 90
22786246 GATATGATAT
* * *
22786256 TTCGTGTAAGACAATGTCTGGGACATGGCATCGATATG-AGGTCCCATGTAAGACCATGTCT-GG
1 TTCGTATAAGACAATATCTGGGACATGGCATCGATATGTAGAT-CCATGTAAGACCATGT-TGGG
22786319 GACATGGCATTGGAACTAACATGAGAC
64 GACATGGCATTGGAACTAACATGAGAC
* * *
22786346 TTCGTATAAGACCATATCTGGTATATGGCATCGATATGTAGATCCATGTAAGACCATGTTGGGGA
1 TTCGTATAAGACAATATCTGGGACATGGCATCGATATGTAGATCCATGTAAGACCATGTTGGGGA
*
22786411 CATGGCTTTGG
66 CATGGCATTGG
22786422 CATTCTATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
89 1 0.01
90 63 0.94
91 3 0.04
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (90 bp):
TTCGTATAAGACAATATCTGGGACATGGCATCGATATGTAGATCCATGTAAGACCATGTTGGGGA
CATGGCATTGGAACTAACATGAGAC
Found at i:22793555 original size:48 final size:47
Alignment explanation
Indices: 22793436--22793645 Score: 188
Period size: 48 Copynumber: 4.4 Consensus size: 47
22793426 TGAGATCCCA
* * * * *
22793436 TGTAAGACCATGTCTGGGACATGGCATCAACATCCGAAATGAGAGCCAG
1 TGTAAGACCATGTCT-GGACATGGCATCAGCGT-TGATATGTGAGCCAG
*
22793485 TGTAAGACCATGTCTGGTACATGACATCAGCGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGG-ACATGGCATCAGCGTTGATATGTGAGCCAG
* * * * *
22793533 TGTAAAACCATGTCTGAGACATGGCATCGGTGTTGATATGTGTGCTAG
1 TGTAAGACCATGTCTG-GACATGGCATCAGCGTTGATATGTGAGCCAG
* * * * * **
22793581 TGTAAGACCATATCTAGGATATGGCATCGGCATTGGTATGTGATTTCA-
1 TGTAAGACCATGTCT-GGACATGGCATCAGCGTTGATATGTGA-GCCAG
*
22793629 TGTAAGACCATATCTGG
1 TGTAAGACCATGTCTGG
22793646 GATATGGCGT
Statistics
Matches: 135, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
47 2 0.01
48 103 0.76
49 30 0.22
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGACATGGCATCAGCGTTGATATGTGAGCCAG
Found at i:22793649 original size:48 final size:48
Alignment explanation
Indices: 22793581--22793747 Score: 175
Period size: 48 Copynumber: 3.6 Consensus size: 48
22793571 TGTGTGCTAG
* **
22793581 TGTAAGACCATATCTAGGATATGGCATCGGCATTGGTATGTGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGGCATTGACATGTGATTTCA
22793629 TGTAAGACCATATCTGGGATATGG---C-G--TTGACATGTGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGGCATTGACATGTGATTTCA
* * * * ** * * *
22793671 TGTAAGACCATGTTTGGGACATGGCATCGCCACCGACATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGGCATTGACATGTGATTTCA
*
22793719 TATAAGACCATATCTGGGATATGGCATCG
1 TGTAAGACCATATCTGGGATATGGCATCG
22793748 ATATGTAGAT
Statistics
Matches: 97, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
42 35 0.36
44 1 0.01
45 2 0.02
48 59 0.61
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTAAGACCATATCTGGGATATGGCATCGGCATTGACATGTGATTTCA
Found at i:22796971 original size:21 final size:21
Alignment explanation
Indices: 22796933--22796984 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
22796923 TTAAGAAGAA
22796933 TTTTTCTAATTAAGATTTAATT
1 TTTTTCTAATTAAGATTT-ATT
* *
22796955 TTTTTCTAGTTTA-ATTTATT
1 TTTTTCTAATTAAGATTTATT
*
22796975 TTGTT-TAATT
1 TTTTTCTAATT
22796985 TAAAATGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 7 0.27
21 4 0.15
22 11 0.42
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (21 bp):
TTTTTCTAATTAAGATTTATT
Found at i:22796982 original size:14 final size:16
Alignment explanation
Indices: 22796948--22796986 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
22796938 CTAATTAAGA
*
22796948 TTTAATTTTTTTCTAG
1 TTTAATTTATTTCTAG
22796964 TTTAATTTATTT-T-G
1 TTTAATTTATTTCTAG
22796978 TTTAATTTA
1 TTTAATTTA
22796987 AAATGTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.45
15 1 0.05
16 11 0.50
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (16 bp):
TTTAATTTATTTCTAG
Found at i:22805979 original size:27 final size:28
Alignment explanation
Indices: 22805949--22806006 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
22805939 GTTCGGCCAA
22805949 TTTAAACCCTAGGGGT-ATATCGGTAAT
1 TTTAAACCCTAGGGGTAATATCGGTAAT
** ** *
22805976 TTTACTCTTTAGGGGTAATTTCGGTAAT
1 TTTAAACCCTAGGGGTAATATCGGTAAT
22806004 TTT
1 TTT
22806007 GCTCTTTAGG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (28 bp):
TTTAAACCCTAGGGGTAATATCGGTAAT
Found at i:22806006 original size:28 final size:28
Alignment explanation
Indices: 22805958--22806023 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
22805948 ATTTAAACCC
*
22805958 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
22805985 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
22806013 TAGGTGTAATT
1 TAGGGGTAATT
22806024 CCGTGATCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 7 0.20
28 28 0.80
ACGTcount: A:0.21, C:0.09, G:0.24, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:22813207 original size:27 final size:28
Alignment explanation
Indices: 22813177--22813234 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
22813167 GTTCGGCCAA
22813177 TTTAAACCCTAGGGGT-ATATCGGTAAT
1 TTTAAACCCTAGGGGTAATATCGGTAAT
** ** *
22813204 TTTACTCTTTAGGGGTAATTTCGGTAAT
1 TTTAAACCCTAGGGGTAATATCGGTAAT
22813232 TTT
1 TTT
22813235 GCTCTTTAGG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (28 bp):
TTTAAACCCTAGGGGTAATATCGGTAAT
Found at i:22813234 original size:28 final size:28
Alignment explanation
Indices: 22813186--22813251 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
22813176 ATTTAAACCC
*
22813186 TAGGGGT-ATATCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
22813213 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
22813241 TAGGGGTAATT
1 TAGGGGTAATT
22813252 CCGTGATCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 7 0.19
28 29 0.81
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:22825493 original size:37 final size:37
Alignment explanation
Indices: 22825434--22825579 Score: 211
Period size: 37 Copynumber: 3.9 Consensus size: 37
22825424 AGCTCAGACG
* * * *
22825434 AAATCTCCACACGAAGTTATCGGGTCTTACTCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
22825471 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
22825508 TACTCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
22825545 TAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
22825580 ATATATTTCC
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:22825794 original size:47 final size:47
Alignment explanation
Indices: 22825742--22826021 Score: 443
Period size: 47 Copynumber: 6.0 Consensus size: 47
22825732 TTTCACACTA
* * * *
22825742 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * * *
22825789 GCCATTCGGCCTTATCACACATATGCATGCTCACGTTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
22825836 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
22825883 GCCATTCGGCTTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
22825930 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
22825977 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
22826022 AAAATCCTAA
Statistics
Matches: 216, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 216 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:22825806 original size:25 final size:25
Alignment explanation
Indices: 22825778--22825853 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 25
22825768 ATGTTCATAT
22825778 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
* * *
22825803 TCA-CACATAT-G-CATGC-TCACGT-
1 TCACCACAT-TGGCCATTCGGC-CTTA
22825825 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
22825850 TCAC
1 TCAC
22825854 ATATATGCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 5 0.13
23 12 0.32
24 12 0.32
25 9 0.24
ACGTcount: A:0.22, C:0.36, G:0.14, T:0.28
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGGCCTTA
Found at i:22825877 original size:25 final size:25
Alignment explanation
Indices: 22825849--22825974 Score: 92
Period size: 25 Copynumber: 5.3 Consensus size: 25
22825839 ATTCGGCCTT
22825849 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
22825874 ATCAC--ATAGGCCA--TTCGGC-TTT
1 ATCACATATATG-CATGTTC-ACATTC
22825896 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
22825921 ATCACAT-T-GGCCA--TTCGGCCTT-
1 ATCACATATATG-CATGTTC-ACATTC
22825943 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
22825968 ATCACAT
1 ATCACAT
22825975 TGGCCATTCG
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 20 0.27
23 14 0.19
24 14 0.19
25 27 0.36
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:22825949 original size:22 final size:22
Alignment explanation
Indices: 22825921--22825996 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
22825911 GTTCACATTC
22825921 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
22825943 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
22825967 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
22825990 ATCACAT
1 ATCACAT
22825997 ATATACACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:22833281 original size:27 final size:28
Alignment explanation
Indices: 22833251--22833304 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
22833241 TTGATGAATT
* * *
22833251 TGAGTAATTTGGG-CTAAATTGTGAAAA
1 TGAGAAATTGGGGACTAAAATGTGAAAA
22833278 TGAGAAATTGGGGAACTAAAATGTGAA
1 TGAGAAATTGGGG-ACTAAAATGTGAA
22833305 TTAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 11 0.50
29 11 0.50
ACGTcount: A:0.41, C:0.04, G:0.28, T:0.28
Consensus pattern (28 bp):
TGAGAAATTGGGGACTAAAATGTGAAAA
Found at i:22836292 original size:40 final size:40
Alignment explanation
Indices: 22836090--22836272 Score: 303
Period size: 40 Copynumber: 4.6 Consensus size: 40
22836080 TGGATGATAA
* * *
22836090 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
22836130 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22836170 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
22836210 CCTGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22836250 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
22836273 CGAGCGAGAA
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:22840206 original size:19 final size:19
Alignment explanation
Indices: 22840182--22840218 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
22840172 ATCATTATCA
22840182 ATTTATTACCAT-GTCATGC
1 ATTTATT-CCATAGTCATGC
22840201 ATTTATTCCATAGTCATG
1 ATTTATTCCATAGTCATG
22840219 ACCACTTCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (19 bp):
ATTTATTCCATAGTCATGC
Found at i:22844751 original size:15 final size:15
Alignment explanation
Indices: 22844727--22844769 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
22844717 AATAAAGATG
22844727 ATAA-GAAATCCAAA
1 ATAAGGAAATCCAAA
*
22844741 ATAAGGAAATCCGAA
1 ATAAGGAAATCCAAA
22844756 ATAGAGG-AATCCAA
1 ATA-AGGAAATCCAA
22844770 GATACCATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 4 0.16
15 18 0.72
16 3 0.12
ACGTcount: A:0.56, C:0.14, G:0.16, T:0.14
Consensus pattern (15 bp):
ATAAGGAAATCCAAA
Found at i:22846803 original size:36 final size:36
Alignment explanation
Indices: 22846756--22846830 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
22846746 TACCCAACAC
22846756 TCAGTCTCTTCTCACTCGGCAAATATTCATGTTCAA
1 TCAGTCTCTTCTCACTCGGCAAATATTCATGTTCAA
22846792 TCAGTCTCTTCTCACTCGGCAAATATTCATGTTCAA
1 TCAGTCTCTTCTCACTCGGCAAATATTCATGTTCAA
22846828 TCA
1 TCA
22846831 TTATCAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.36
Consensus pattern (36 bp):
TCAGTCTCTTCTCACTCGGCAAATATTCATGTTCAA
Found at i:22848510 original size:12 final size:13
Alignment explanation
Indices: 22848493--22848522 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
22848483 TACTGCAATT
22848493 TAATTTTTATT-C
1 TAATTTTTATTGC
22848505 TAATTTTTATTGC
1 TAATTTTTATTGC
22848518 TAATT
1 TAATT
22848523 CTTCTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63
Consensus pattern (13 bp):
TAATTTTTATTGC
Found at i:22853480 original size:14 final size:14
Alignment explanation
Indices: 22853447--22853486 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
22853437 ATGTTTAAAA
22853447 ACTTTTA-TTTATT
1 ACTTTTATTTTATT
*
22853460 A-TTTTATTTTTTT
1 ACTTTTATTTTATT
22853473 ACTTTTATTTTATT
1 ACTTTTATTTTATT
22853487 TTAAGACTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 5 0.22
13 7 0.30
14 11 0.48
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (14 bp):
ACTTTTATTTTATT
Found at i:22864017 original size:29 final size:28
Alignment explanation
Indices: 22863984--22864039 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
22863974 CCGAGCCTAG
22863984 GGGCAAAAGTGTAAATATGCAAAAGTTTA
1 GGGCAAAAGTGTAAATATGC-AAAGTTTA
* * *
22864013 GGGCAAAATTGTAATTTTGCAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAGTTT
22864040 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.30
Consensus pattern (28 bp):
GGGCAAAAGTGTAAATATGCAAAGTTTA
Found at i:22869172 original size:68 final size:66
Alignment explanation
Indices: 22869100--22869271 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
22869090 CATCATGTGT
* * * *
22869100 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
22869163 TGTAG
62 TGTAG
** * *
22869168 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
22869233 AG
65 AG
* * * *
22869235 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
22869272 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:22869205 original size:64 final size:64
Alignment explanation
Indices: 22869124--22869307 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
22869114 AGACATTATG
* * *
22869124 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
22869188 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
22869253 AA
63 AA
* * *
22869255 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
22869308 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:22895402 original size:48 final size:48
Alignment explanation
Indices: 22895320--22895604 Score: 322
Period size: 48 Copynumber: 5.9 Consensus size: 48
22895310 ACTAGGGTTA
* * * *
22895320 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGT
* * * * * *
22895368 TGTGAGAGCTAGTGTAAGACCCTATCTGGGACATGGCATCGACACCGAT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-T
* * * *
22895417 ATATGAGAGCCAGTGTAAGACTATGTTTGGGACATGGCATCGGCCTCGA
1 -TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGT
* * * * **
22895466 TATGTG-GCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTAT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGT
22895513 TATGTAG-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAT
1 TATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-T
*
22895562 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACTTGGCATCGG
1 -TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
22895605 TATTTTACCC
Statistics
Matches: 196, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
47 38 0.19
48 78 0.40
49 4 0.02
50 76 0.39
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGT
Found at i:22895593 original size:145 final size:146
Alignment explanation
Indices: 22895319--22895604 Score: 450
Period size: 145 Copynumber: 2.0 Consensus size: 146
22895309 TACTAGGGTT
* * * *
22895319 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTGTGAGAGCTAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATGAGAGCCAGTGTA
* * *
22895384 AGACCCTATCTGGGACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGACTATGTTTGGGA
66 AGACCATATCTGGGACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGACCATGTCTGGGA
22895449 CATGGCATCGGCCTCG
131 CATGGCATCGGCCTCG
22895465 ATATGTG-GCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATGTAG-GCCAGTGT
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATG-AGAGCCAGTGT
* * *
22895528 AAGACCATGTCTGGGACATGGCATCGGCATCGATATATGAGAGCCAGTGTAAGACCATGTCTGGG
65 AAGACCATATCTGGGACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGACCATGTCTGGG
*
22895593 ACTTGGCATCGG
130 ACATGGCATCGG
22895605 TATTTTACCC
Statistics
Matches: 128, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
145 119 0.93
146 9 0.07
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (146 bp):
ATATGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATGAGAGCCAGTGTA
AGACCATATCTGGGACATGGCATCGACACCGATATATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCCTCG
Found at i:22896589 original size:19 final size:19
Alignment explanation
Indices: 22896565--22896602 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
22896555 GAGTTTCGAG
22896565 AAACTAAAGGCATTGTTGA
1 AAACTAAAGGCATTGTTGA
22896584 AAACTAAAGGCATTGTTGA
1 AAACTAAAGGCATTGTTGA
22896603 CTGAAGCTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (19 bp):
AAACTAAAGGCATTGTTGA
Found at i:22899829 original size:48 final size:48
Alignment explanation
Indices: 22899678--22899895 Score: 226
Period size: 48 Copynumber: 4.5 Consensus size: 48
22899668 TGATACTAGG
* * * *
22899678 GACCATGTTTGGAACATGGCATCGGCATTG-T-TGTAAGAGCTAGTGTAA
1 GACCATGTTTGGGACATGGCATCGGCCTCGATATGT-A-AGCCAGTGTAA
* * * *
22899726 GACCCTATTAGGGACATGGCATCGGCAC-CGATATATGAGAGCCAGTGTAA
1 GACCATGTTTGGGACATGGCATCGGC-CTCGATATGT-A-AGCCAGTGTAA
* *
22899776 GACCATGTCTGGGAGATGGCATCGGCCTCGATATGTAAGCCAGTGTAA
1 GACCATGTTTGGGACATGGCATCGGCCTCGATATGTAAGCCAGTGTAA
* * * * * *
22899824 CACCATGTTTGGAACATGGCATCGGCATTGTTATGTAGGCCAGTGTAA
1 GACCATGTTTGGGACATGGCATCGGCCTCGATATGTAAGCCAGTGTAA
22899872 GACCATGTTTGGGACATGGCATCG
1 GACCATGTTTGGGACATGGCATCG
22899896 ACATTTTACC
Statistics
Matches: 141, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
48 96 0.68
49 3 0.02
50 42 0.30
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
GACCATGTTTGGGACATGGCATCGGCCTCGATATGTAAGCCAGTGTAA
Found at i:22901696 original size:29 final size:27
Alignment explanation
Indices: 22901656--22901761 Score: 124
Period size: 28 Copynumber: 3.8 Consensus size: 27
22901646 TTTGGCCTCT
*
22901656 TTAGGCCCAATCTCATTCATATAGCCCA
1 TTAGGCCCAATCACATTCATAT-GCCCA
22901684 TTAGGCCCAAATCACATTCATATGACCCA
1 TTAGGCCC-AATCACATTCATATG-CCCA
* *
22901713 TCAGCCCCAATCACATTCATATGGCCCA
1 TTAGGCCCAATCACATTCATAT-GCCCA
*
22901741 -TCGGCCCTAATCACATTCATA
1 TTAGGCCC-AATCACATTCATA
22901762 GTCATGCAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
27 4 0.06
28 40 0.59
29 24 0.35
ACGTcount: A:0.30, C:0.34, G:0.10, T:0.25
Consensus pattern (27 bp):
TTAGGCCCAATCACATTCATATGCCCA
Found at i:22911888 original size:28 final size:28
Alignment explanation
Indices: 22911857--22912066 Score: 151
Period size: 28 Copynumber: 7.5 Consensus size: 28
22911847 CTGACCGATC
*
22911857 TCGCACACATAGTGCTCGGTTAAAGAAT
1 TCGCACACACAGTGCTCGGTTAAAGAAT
*** * **
22911885 TCGCACACACAGTG-TCCACTGACCAAT
1 TCGCACACACAGTGCTCGGTTAAAGAAT
*
22911912 CTCGCACACATAGTGCTCGGTTAAAGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGAAT
* ** * **
22911941 TCGTACACACAGTG-TCCACTGACCG-AT
1 TCGCACACACAGTGCT-CGGTTAAAGAAT
*
22911968 CTCGCACACATAGTGCTCGGTTAAAGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGAAT
** * **
22911997 TCGCACACACAGTG-TCCACTGACCG-AT
1 TCGCACACACAGTGCT-CGGTTAAAGAAT
*
22912024 CTCGCACACATAGTGCTCGGTTAAAGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGAAT
22912053 TCGCACACACAGTG
1 TCGCACACACAGTG
22912067 TCTCAATTCA
Statistics
Matches: 131, Mismatches: 41, Indels: 20
0.68 0.21 0.10
Matches are distributed among these distances:
27 13 0.10
28 105 0.80
29 13 0.10
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (28 bp):
TCGCACACACAGTGCTCGGTTAAAGAAT
Found at i:22911893 original size:56 final size:56
Alignment explanation
Indices: 22911832--22912068 Score: 447
Period size: 56 Copynumber: 4.2 Consensus size: 56
22911822 ACGAAATCCA
*
22911832 CACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATTCG
1 CACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATTCG
*
22911888 CACACACAGTGTCCACTGACCAATCTCGCACACATAGTGCTCGGTTAAAGAATTCG
1 CACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATTCG
*
22911944 TACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATTCG
1 CACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATTCG
22912000 CACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATTCG
1 CACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATTCG
22912056 CACACACAGTGTC
1 CACACACAGTGTC
22912069 TCAATTCATT
Statistics
Matches: 176, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 176 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (56 bp):
CACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATTCG
Found at i:22912085 original size:25 final size:25
Alignment explanation
Indices: 22912051--22912105 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
22912041 CGGTTAAAGA
*
22912051 ATTCGCACACACAGTGTCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
22912076 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
22912101 ATTCG
1 ATTCG
22912106 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:22912335 original size:40 final size:40
Alignment explanation
Indices: 22912274--22912464 Score: 337
Period size: 40 Copynumber: 4.8 Consensus size: 40
22912264 CACATCATCG
* *
22912274 GCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
* *
22912314 GCATGAATGCTCTTCGAGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
22912354 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
22912394 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
*
22912434 GCACGAATGCTCTTCGGGACTTAACCCGGAT
1 GCACGAATGCTCTTCGGGACTTAGCCCGGAT
22912465 CATCGTCGAG
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
Found at i:22912610 original size:38 final size:38
Alignment explanation
Indices: 22912530--22912634 Score: 124
Period size: 38 Copynumber: 2.8 Consensus size: 38
22912520 ATCCGGACAT
* * * * *
22912530 AATCTCTGCACATAGCCATCGGATCTTTACCCGAGCAT
1 AATCTCTACATATAGTCATCGGGTCTTTACCCGAGCAC
22912568 AATCT-TCACATATAGTCATCGGGTCTTTACCCG-GACAC
1 AATCTCT-ACATATAGTCATCGGGTCTTTACCCGAG-CAC
*
22912606 AATCTCTACTTATAGTCATCGGGTCTTTA
1 AATCTCTACATATAGTCATCGGGTCTTTA
22912635 AGCCCGGATT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
37 2 0.03
38 55 0.95
39 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (38 bp):
AATCTCTACATATAGTCATCGGGTCTTTACCCGAGCAC
Found at i:22914633 original size:47 final size:47
Alignment explanation
Indices: 22914582--22914898 Score: 508
Period size: 47 Copynumber: 6.7 Consensus size: 47
22914572 CTTCCATTTC
* * **
22914582 CATCACATTGACCATTTGGCCTTATCACATACATACATTTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATT
*
22914629 CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATT
**
22914676 CATCACATTGGCCATTCAACCTTATCACATATACATACACCTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCAC--ATACATACACCTTCACATT
22914725 CATCACATTGGCCATTCGGCCTTATCACATATACATACACCTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCAC--ATACATACACCTTCACATT
22914774 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATT
* *
22914821 TATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATT
*
22914868 CATCACATTGGCCATTTGGCCTTATCACATA
1 CATCACATTGGCCATTCGGCCTTATCACATA
22914899 TACATATCTT
Statistics
Matches: 256, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 163 0.64
49 93 0.36
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATT
Found at i:22914729 original size:27 final size:27
Alignment explanation
Indices: 22914699--22914781 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
22914689 ATTCAACCTT
22914699 ATCACATATACATACACCTTCACATTC
1 ATCACATATACATACACCTTCACATTC
* * *
22914726 ATCACAT-TGGC---CA--TTCGGCCTT-
1 ATCACATAT-ACATACACCTTC-ACATTC
22914748 ATCACATATACATACACCTTCACATTC
1 ATCACATATACATACACCTTCACATTC
22914775 ATCACAT
1 ATCACAT
22914782 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 11 0.27
23 4 0.10
24 2 0.05
25 2 0.05
26 4 0.10
27 18 0.44
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30
Consensus pattern (27 bp):
ATCACATATACATACACCTTCACATTC
Found at i:22914904 original size:96 final size:94
Alignment explanation
Indices: 22914582--22914898 Score: 517
Period size: 96 Copynumber: 3.3 Consensus size: 94
22914572 CTTCCATTTC
* * **
22914582 CATCACATTGACCATTTGGCCTTATCACATACATACATTTTCACATTCATCACATTGGCCATTCG
1 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATTCATCACATTGGCCATTCG
22914647 GCCTTATCACATACATACACTTTCACATT
66 GCCTTATCACATACATACACTTTCACATT
**
22914676 CATCACATTGGCCATTCAACCTTATCACATATACATACACCTTCACATTCATCACATTGGCCATT
1 CATCACATTGGCCATTCGGCCTTATCAC--ATACATACACCTTCACATTCATCACATTGGCCATT
*
22914741 CGGCCTTATCACATATACATACACCTTCACATT
64 CGGCCTTATCAC--ATACATACACTTTCACATT
*
22914774 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATTTATCACATTGGCCATTCG
1 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATTCATCACATTGGCCATTCG
22914839 GCCTTATCACATACATACACTTTCACATT
66 GCCTTATCACATACATACACTTTCACATT
*
22914868 CATCACATTGGCCATTTGGCCTTATCACATA
1 CATCACATTGGCCATTCGGCCTTATCACATA
22914899 TACATATCTT
Statistics
Matches: 207, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
94 72 0.35
96 91 0.44
98 44 0.21
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATTCATCACATTGGCCATTCG
GCCTTATCACATACATACACTTTCACATT
Found at i:22916483 original size:27 final size:27
Alignment explanation
Indices: 22916448--22916707 Score: 337
Period size: 27 Copynumber: 9.7 Consensus size: 27
22916438 CCAAAGTACT
22916448 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
22916475 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
22916502 CTCGATTTATAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
22916529 C-CTAATTTACATAATTACCATTTTACC
1 CTC-GATTTACAGAATTACCGTTTTACC
* *
22916556 C-CGATTTACATAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
22916582 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
22916609 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
22916636 CTCGATTTATAGAATTATTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
22916663 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
22916690 CTCGATTTACAAAATTAC
1 CTCGATTTACAGAATTAC
22916708 TAAAATACCC
Statistics
Matches: 203, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 24 0.12
27 178 0.88
28 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:22916595 original size:134 final size:135
Alignment explanation
Indices: 22916448--22916706 Score: 423
Period size: 134 Copynumber: 1.9 Consensus size: 135
22916438 CCAAAGTACT
*
22916448 CTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTAT
1 CTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCGATTTAT
* *
22916512 AGAATTATCGTTTTACCCCTAATTTACATAATTACCATTTTACCC-CGATTTACATAATTATCGT
65 AGAATTATCGTTTTACCCCTAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATCGT
22916576 TTTACC
130 TTTACC
22916582 CTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATA
1 CTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATA
* * * **
22916647 GAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA
66 GAATTATCGTTTTACCCCTAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTA
22916707 CTAAAATACC
Statistics
Matches: 115, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
134 100 0.87
135 15 0.13
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (135 bp):
CTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATA
GAATTATCGTTTTACCCCTAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTT
TTACC
Found at i:22916744 original size:81 final size:81
Alignment explanation
Indices: 22916498--22916751 Score: 208
Period size: 81 Copynumber: 3.1 Consensus size: 81
22916488 ATTACTATTT
* * * * ***
22916498 TACCCTCGATTTATAGAATTATCGTTTTACCC-CTAATTTACATAATTACCATTTTACCC-CGAT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-GATTTACAAAATTACCAAAATACCCTCGAT
* * * ***
22916561 TTACATAATTATCGTTT
65 TTATAGAATTACCGCAA
* ***
22916578 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
** ***
22916643 TATAGAATTATTGTTT
66 TATAGAATTACCGCAA
* * * * *
22916659 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
*
22916724 TGT-GAAATTACCGCAA
66 TATAG-AATTACCGCAA
*
22916740 TACCCTCAATTT
1 TACCCTCGATTT
22916752 GTAAAACTAC
Statistics
Matches: 147, Mismatches: 24, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
80 54 0.37
81 93 0.63
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TATAGAATTACCGCAA
Found at i:22917974 original size:25 final size:25
Alignment explanation
Indices: 22917946--22917993 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22917936 TTATACCATG
* * *
22917946 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
22917971 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
22917994 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:22918096 original size:20 final size:20
Alignment explanation
Indices: 22918036--22918096 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
22918026 ATAAATATGG
*
22918036 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
22918056 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
22918076 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
22918096 T
1 T
22918097 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:22918173 original size:24 final size:24
Alignment explanation
Indices: 22918146--22918288 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
22918136 GAGGAAGTGA
22918146 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
22918170 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
22918194 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
22918217 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
22918241 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
22918265 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
22918289 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:22918239 original size:47 final size:47
Alignment explanation
Indices: 22918146--22918288 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
22918136 GAGGAAGTGA
22918146 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
22918194 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
22918241 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
22918289 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:22918262 original size:71 final size:72
Alignment explanation
Indices: 22918146--22918289 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
22918136 GAGGAAGTGA
*
22918146 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
22918209 CCAGTTAT
65 CCAGTTAT
** * *
22918217 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
22918282 CAGTTAT
66 CAGTTAT
22918289 A
1 A
22918290 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:22918515 original size:31 final size:31
Alignment explanation
Indices: 22918480--22918543 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
22918470 CGTTTACAGT
22918480 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
22918511 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
22918542 AA
1 AA
22918544 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:22920558 original size:53 final size:53
Alignment explanation
Indices: 22920495--22920600 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
22920485 TATACACCCA
22920495 CCATTAACCGAATCTCATTTAATCAAATTTATTTCTTGACAATTTCATCACAT
1 CCATTAACCGAATCTCATTTAATCAAATTTATTTCTTGACAATTTCATCACAT
22920548 CCATTAACCGAATCTCATTTAATCAAATTTATTTCTTGACAATTTCATCACAT
1 CCATTAACCGAATCTCATTTAATCAAATTTATTTCTTGACAATTTCATCACAT
22920601 TCGGTCATAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.40
Consensus pattern (53 bp):
CCATTAACCGAATCTCATTTAATCAAATTTATTTCTTGACAATTTCATCACAT
Found at i:22923573 original size:47 final size:47
Alignment explanation
Indices: 22923453--22923631 Score: 208
Period size: 45 Copynumber: 3.9 Consensus size: 47
22923443 ATGTAACCGC
* * * *
22923453 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CG-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCAT
*
22923498 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG---CAT
* * *
22923548 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCAT
*
22923591 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC
22923632 CAAATATCCC
Statistics
Matches: 113, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 36 0.32
46 34 0.30
47 33 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCAT
Found at i:22923618 original size:93 final size:92
Alignment explanation
Indices: 22923460--22923631 Score: 317
Period size: 93 Copynumber: 1.9 Consensus size: 92
22923450 CGCCCATAAG
*
22923460 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22923525 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
22923552 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
22923617 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
22923632 CAAATATCCC
Statistics
Matches: 77, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.36
93 49 0.64
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:22923646 original size:46 final size:45
Alignment explanation
Indices: 22923503--22923646 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
22923493 CGCATCCATA
* *
22923503 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
22923551 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
22923596 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
22923642 AGTGA
1 AGTGA
22923647 CATGTCACTC
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:22944436 original size:45 final size:43
Alignment explanation
Indices: 22944386--22944476 Score: 137
Period size: 45 Copynumber: 2.1 Consensus size: 43
22944376 CATGTGTCAA
*
22944386 ATATATCACGAACTCAGACCACAACTCAATGAGTTCAGATGTTAC
1 ATATATCACGAACTCAGACAACAACTCAATGAGTTCA-A-GTTAC
* *
22944431 ATATATCATGAACTTAGACAACAACTCAATGAGTTCAAGTTAC
1 ATATATCACGAACTCAGACAACAACTCAATGAGTTCAAGTTAC
22944474 ATA
1 ATA
22944477 ATTCCTAGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 8 0.19
44 1 0.02
45 34 0.79
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (43 bp):
ATATATCACGAACTCAGACAACAACTCAATGAGTTCAAGTTAC
Found at i:22944591 original size:34 final size:34
Alignment explanation
Indices: 22944553--22944659 Score: 115
Period size: 40 Copynumber: 3.0 Consensus size: 34
22944543 CATTTCTGTC
22944553 GTTACATAATTCCTACTCGTTATGTCGATTTCAG
1 GTTACATAATTCCTACTCGTTATGTCGATTTCAG
** * * *
22944587 GTTACATAATTCCTACATAATTCCTACTCAATGAGTTCAG
1 GTTACATAATTCCTAC-TCGTT-AT-GTC---GATTTCAG
22944627 GTTACATAATTCCTACTCGTTATGTCGATTTCA
1 GTTACATAATTCCTACTCGTTATGTCGATTTCA
22944660 ATATTCATAG
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
34 22 0.39
35 3 0.05
36 1 0.02
37 4 0.07
38 1 0.02
39 3 0.05
40 23 0.40
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.39
Consensus pattern (34 bp):
GTTACATAATTCCTACTCGTTATGTCGATTTCAG
Found at i:22944605 original size:11 final size:11
Alignment explanation
Indices: 22944589--22944613 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22944579 GATTTCAGGT
22944589 TACATAATTCC
1 TACATAATTCC
22944600 TACATAATTCC
1 TACATAATTCC
22944611 TAC
1 TAC
22944614 TCAATGAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (11 bp):
TACATAATTCC
Found at i:22950873 original size:40 final size:40
Alignment explanation
Indices: 22950811--22951010 Score: 249
Period size: 40 Copynumber: 4.9 Consensus size: 40
22950801 TATTCGGATG
*
22950811 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
22950851 ATATTCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
22950894 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
22950934 AT-TTCCGGGCTAAGACCCGAAGTCATGTGTGCGAGTTACT
1 ATATT-CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
22950974 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTT
22951011 GTGATATCCG
Statistics
Matches: 138, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 2 0.01
40 97 0.70
41 2 0.01
43 37 0.27
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:22950965 original size:83 final size:80
Alignment explanation
Indices: 22950811--22951005 Score: 266
Period size: 83 Copynumber: 2.4 Consensus size: 80
22950801 TATTCGGATG
* * *
22950811 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATTCGGGCTAAGTCCTGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGACCCGAAGGCA
* *
22950876 TTTGTGCGAGTAGTTGCT
66 TGTGTGC--G-AGTTACT
* * *
22950894 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT-TTCCGGGCTAAGACCCGAAGTC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATT-CGGGCTAAGACCCGAAGGC
22950958 ATGTGTGCGAGTTACT
65 ATGTGTGCGAGTTACT
*
22950974 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
22951006 GAGTTGTGAT
Statistics
Matches: 101, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
80 36 0.36
81 1 0.01
82 2 0.02
83 62 0.61
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATTCGGGCTAAGACCCGAAGGCA
TGTGTGCGAGTTACT
Found at i:22951018 original size:40 final size:39
Alignment explanation
Indices: 22950811--22951034 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 39
22950801 TATTCGGATG
* *
22950811 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-GT
* *
22950851 ATATTCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTG-T
* *
22950894 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG--T
* * * * *
22950934 ATTTCCGGGCTAAGACCCGAAGTCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-GT
*
22950974 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGT
*
22951013 GATATCC-GGCTAAAT-CCGAAGG
1 -ATATCCGGGCTAAGTCCCGAAGG
22951035 TACTTGGTTT
Statistics
Matches: 155, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
38 7 0.05
39 9 0.06
40 102 0.66
41 1 0.01
43 36 0.23
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGT
Found at i:22959243 original size:40 final size:40
Alignment explanation
Indices: 22959188--22959410 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
22959178 TATTCGGATG
22959188 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
22959228 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
22959270 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
22959309 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
22959349 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
22959389 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
22959411 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 37 0.23
40 88 0.55
41 11 0.07
42 25 0.16
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:22966897 original size:40 final size:40
Alignment explanation
Indices: 22966852--22967019 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
22966842 CGGAATACAA
22966852 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
22966892 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
22966932 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
22966972 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
22967012 CCGGATAT
1 CCGGATAT
22967020 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:22966992 original size:80 final size:80
Alignment explanation
Indices: 22966852--22967019 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
22966842 CGGAATACAA
* *
22966852 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
22966917 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
22966932 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
22966995 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
22967012 CCGGATAT
1 CCGGATAT
22967020 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:22974878 original size:40 final size:40
Alignment explanation
Indices: 22974833--22975000 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
22974823 CGGAATACAA
22974833 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
22974873 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
22974913 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
22974953 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
22974993 CCGGATAT
1 CCGGATAT
22975001 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:22974973 original size:80 final size:80
Alignment explanation
Indices: 22974833--22975000 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
22974823 CGGAATACAA
* *
22974833 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
22974898 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
22974913 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
22974976 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
22974993 CCGGATAT
1 CCGGATAT
22975001 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:22980125 original size:29 final size:29
Alignment explanation
Indices: 22980092--22980252 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
22980082 GTGACGAGAT
22980092 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
22980121 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
22980150 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
22980179 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
22980208 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
22980237 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
22980253 AAATCGAGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 110 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:22990434 original size:13 final size:13
Alignment explanation
Indices: 22990416--22990440 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22990406 TGCCATTAAG
22990416 GGCATATTGGTTA
1 GGCATATTGGTTA
22990429 GGCATATTGGTT
1 GGCATATTGGTT
22990441 TGGATAGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.32, T:0.40
Consensus pattern (13 bp):
GGCATATTGGTTA
Found at i:22992085 original size:21 final size:22
Alignment explanation
Indices: 22992052--22992092 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
22992042 TTCCTTTATG
*
22992052 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
22992073 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
22992093 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:22996719 original size:24 final size:24
Alignment explanation
Indices: 22996682--22996785 Score: 167
Period size: 23 Copynumber: 4.4 Consensus size: 24
22996672 CTAGAGGCCT
*
22996682 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
22996707 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
22996731 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
22996754 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
22996777 AGCACTTTT
1 AGCCCTTTT
22996786 TCACTTCCTT
Statistics
Matches: 76, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
23 45 0.59
24 27 0.36
25 4 0.05
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:22996941 original size:20 final size:20
Alignment explanation
Indices: 22996837--22996934 Score: 187
Period size: 20 Copynumber: 4.9 Consensus size: 20
22996827 ATGAATACAG
*
22996837 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATGT
22996857 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATGT
22996877 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATGT
22996897 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATGT
22996917 CATGTGCATATCATACAT
1 CATGTGCATATCATACAT
22996935 ACCATGTTTA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
20 77 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (20 bp):
CATGTGCATATCATACATGT
Found at i:22997010 original size:25 final size:25
Alignment explanation
Indices: 22996978--22997025 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22996968 ATACATAAAC
* * *
22996978 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
22997003 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
22997026 CACGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:22999645 original size:13 final size:13
Alignment explanation
Indices: 22999627--22999662 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
22999617 TCTATTTCCT
22999627 TATAACCATTTCA
1 TATAACCATTTCA
22999640 TATAACCATTTCA
1 TATAACCATTTCA
22999653 TATAACCATT
1 TATAACCATT
22999663 CCAGTTTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (13 bp):
TATAACCATTTCA
Found at i:23002304 original size:15 final size:15
Alignment explanation
Indices: 23002264--23002306 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
23002254 TAATCAATTC
23002264 ATATAACCATTTCAT
1 ATATAACCATTTCAT
* *
23002279 GTAT--TCATTTCAT
1 ATATAACCATTTCAT
23002292 ATATAACCATTTCAT
1 ATATAACCATTTCAT
23002307 CTAAACATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
13 11 0.50
15 11 0.50
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (15 bp):
ATATAACCATTTCAT
Found at i:23018935 original size:2 final size:2
Alignment explanation
Indices: 23018928--23018955 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23018918 TGTTTGATTC
23018928 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23018956 TATGTTTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23021204 original size:44 final size:42
Alignment explanation
Indices: 23021133--23021227 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 42
23021123 TGTGATATTA
* * * *
23021133 TGTAAGACCACGTCTGGGACGTTGGCATCGTCT-TGAGATTTACG
1 TGTAAGACCACGTCTGGAACATCGGCATCGTATAT--GATTT-CG
*
23021177 TGTAAGACCATGTCTGGAACATCGGCATCGTATATGATTTCG
1 TGTAAGACCACGTCTGGAACATCGGCATCGTATATGATTTCG
23021219 TGTAAGACC
1 TGTAAGACC
23021228 CTATTTGGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 11 0.24
43 5 0.11
44 28 0.62
45 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGAACATCGGCATCGTATATGATTTCG
Found at i:23021246 original size:42 final size:43
Alignment explanation
Indices: 23021169--23021271 Score: 102
Period size: 42 Copynumber: 2.4 Consensus size: 43
23021159 ATCGTCTTGA
* *
23021169 GATTTACGTGTAAGACCATGTCTGGAACATCGGCATC-GTATAT
1 GATTT-CGTGTAAGACCATATCTGGAACATCGGCATCAATATAT
* * * *
23021212 GATTTCGTGTAAGACCCTATTTGGGACAGT-GGCATCAATATTT
1 GATTTCGTGTAAGACCATATCTGGAACA-TCGGCATCAATATAT
* *
23021255 GATTACATGTAAGACCA
1 GATTTCGTGTAAGACCA
23021272 CGTCTGGGAC
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 25 0.51
43 24 0.49
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATATCTGGAACATCGGCATCAATATAT
Found at i:23021280 original size:43 final size:42
Alignment explanation
Indices: 23021132--23021294 Score: 141
Period size: 43 Copynumber: 3.8 Consensus size: 42
23021122 GTGTGATATT
* *
23021132 ATGTAAGACCACGTCTGGGACGTTGGCATCGTCTTGAGATTTAC
1 ATGTAAGACCACGTCTGGGACGTTGGCATCGTATT-TGA-TTAC
* * * * * * *
23021176 GTGTAAGACCATGTCTGGAACATCGGCATCGTATATGATTTC
1 ATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
* * * *
23021218 GTGTAAGACC-CTATTTGGGACAG-TGGCATCAATATTTGATTAC
1 ATGTAAGACCAC-GTCTGGGAC-GTTGGCATC-GTATTTGATTAC
*
23021261 ATGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 ATGTAAGACCACGTCTGGGACGTTGGCATCGTAT
23021295 GATTTTTCTG
Statistics
Matches: 91, Mismatches: 23, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
42 29 0.32
43 33 0.36
44 29 0.32
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
ATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
Found at i:23022624 original size:20 final size:20
Alignment explanation
Indices: 23022599--23022642 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
23022589 TTGTAAATTG
*
23022599 ATCATAAAATGTTCTGATAC
1 ATCATAAAATGTTCCGATAC
*
23022619 ATCATAAAATGTTCCGATTC
1 ATCATAAAATGTTCCGATAC
23022639 ATCA
1 ATCA
23022643 GGTACTACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (20 bp):
ATCATAAAATGTTCCGATAC
Found at i:23022827 original size:7 final size:7
Alignment explanation
Indices: 23022817--23022842 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23022807 TGGGGAATAT
23022817 AAATTTA
1 AAATTTA
23022824 AAATTTA
1 AAATTTA
23022831 AAATTTA
1 AAATTTA
23022838 AAATT
1 AAATT
23022843 ACATAGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
AAATTTA
Found at i:23025901 original size:24 final size:23
Alignment explanation
Indices: 23025874--23025918 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
23025864 TTTTTCAAAC
23025874 ATACA-AATATAAATTTACAATATT
1 ATACATAATAT-AATTT-CAATATT
23025898 ATACATAATATAATTTCAATA
1 ATACATAATATAATTTCAATA
23025919 AAGTCAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.25
24 10 0.50
25 5 0.25
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (23 bp):
ATACATAATATAATTTCAATATT
Found at i:23026433 original size:2 final size:2
Alignment explanation
Indices: 23026426--23026454 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
23026416 TTCCATAAAC
23026426 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23026455 TCAAAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23032113 original size:18 final size:17
Alignment explanation
Indices: 23032092--23032133 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
23032082 AGTTATTTTT
23032092 AAAATATAAGATATTTAA
1 AAAATATAAGAT-TTTAA
**
23032110 AAAATATATTATTTTAA
1 AAAATATAAGATTTTAA
23032127 AAAATAT
1 AAAATAT
23032134 GTGACTCTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
AAAATATAAGATTTTAA
Found at i:23032235 original size:29 final size:29
Alignment explanation
Indices: 23032202--23032288 Score: 174
Period size: 29 Copynumber: 3.0 Consensus size: 29
23032192 TTAAAAATTA
23032202 AAAATAGAATCATTTTTAAATATAAAACT
1 AAAATAGAATCATTTTTAAATATAAAACT
23032231 AAAATAGAATCATTTTTAAATATAAAACT
1 AAAATAGAATCATTTTTAAATATAAAACT
23032260 AAAATAGAATCATTTTTAAATATAAAACT
1 AAAATAGAATCATTTTTAAATATAAAACT
23032289 TTTAAATTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (29 bp):
AAAATAGAATCATTTTTAAATATAAAACT
Found at i:23037394 original size:18 final size:18
Alignment explanation
Indices: 23037373--23037407 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23037363 GAATTATTCG
* *
23037373 AATCGAGTTAATTGAATT
1 AATCAAGTTAATCGAATT
23037391 AATCAAGTTAATCGAAT
1 AATCAAGTTAATCGAAT
23037408 CAACTCAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (18 bp):
AATCAAGTTAATCGAATT
Found at i:23045449 original size:45 final size:41
Alignment explanation
Indices: 23045390--23045475 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 41
23045380 TATTAAATTT
* *
23045390 AATTTAATGTTTATCTTGTAGATAAATATTCTATTAATTTAATA
1 AATTTAATATTTATC-T-T-GATAAATATTATATTAATTTAATA
23045434 AATTCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 AATT-TAATATTTATCTTGATAAATATTATATTAATTTAATA
23045476 TTAAAGTGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
42 23 0.59
43 1 0.03
44 5 0.13
45 10 0.26
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (41 bp):
AATTTAATATTTATCTTGATAAATATTATATTAATTTAATA
Found at i:23045465 original size:21 final size:20
Alignment explanation
Indices: 23045410--23045471 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
23045400 TTATCTTGTA
*
23045410 GATAAATATTCTATTAATTT
1 GATAAATATTATATTAATTT
* *
23045430 AATAAAT-TCTAATATTTATCTT
1 GATAAATAT-T-ATATTAAT-TT
23045452 GATAAATATTATATTAATTT
1 GATAAATATTATATTAATTT
23045472 AATATTAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
19 1 0.03
20 9 0.27
21 13 0.39
22 9 0.27
23 1 0.03
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (20 bp):
GATAAATATTATATTAATTT
Found at i:23046567 original size:27 final size:27
Alignment explanation
Indices: 23046516--23046569 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
23046506 TACATTGGTT
* **
23046516 AACCCCAGTTTGCCAAACCTGTTGGCG
1 AACCCCAGCTTGCCAAACCACTTGGCG
*
23046543 AACCCCAGCTTGCCAACCCACTTGGCG
1 AACCCCAGCTTGCCAAACCACTTGGCG
23046570 TGCTCAGCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.22, C:0.39, G:0.20, T:0.19
Consensus pattern (27 bp):
AACCCCAGCTTGCCAAACCACTTGGCG
Found at i:23056418 original size:24 final size:24
Alignment explanation
Indices: 23056391--23056453 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
23056381 CTTATTATGT
23056391 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
23056415 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
23056439 TCGCACACATAGTGC
1 TCGCACACATAGTGC
23056454 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:23059640 original size:79 final size:79
Alignment explanation
Indices: 23059549--23059706 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
23059539 TGGTAATTTC
23059549 GGCCTCCATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCTCATGAAAAAGA
1 GGCCTCCATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCTCATGAAAAAGA
23059614 TGAGTAAATTTTGG
66 TGAGTAAATTTTGG
23059628 GGCCTCCATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCTCATGAAAAAGA
1 GGCCTCCATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCTCATGAAAAAGA
23059693 TGAGTAAATTTTGG
66 TGAGTAAATTTTGG
23059707 CTTTATTTTC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (79 bp):
GGCCTCCATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCTCATGAAAAAGA
TGAGTAAATTTTGG
Found at i:23059705 original size:48 final size:48
Alignment explanation
Indices: 23059634--23059729 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
23059624 TTGGGGCCTC
23059634 CATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCT
1 CATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCT
23059682 CATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCT
1 CATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCT
23059730 TTTAATTACC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.50
Consensus pattern (48 bp):
CATGAAAAAGATGAGTAAATTTTGGCTTTATTTTCCTTTTTTATTTCT
Found at i:23061765 original size:62 final size:61
Alignment explanation
Indices: 23061694--23061813 Score: 231
Period size: 62 Copynumber: 2.0 Consensus size: 61
23061684 GAATGAATTT
23061694 ACATGGTTTTGGCTTTGTTTTATTATTATTATTAACTTAATACATAAATTACTATATTATTA
1 ACATGGTTTTGGCTTTGTTTTATTATTATTATTAACTTAATACATAAATTACTA-ATTATTA
23061756 ACATGGTTTTGGCTTTGTTTTATTATTATTATTAACTTAATACATAAATTACTAATTA
1 ACATGGTTTTGGCTTTGTTTTATTATTATTATTAACTTAATACATAAATTACTAATTA
23061814 ACCTTATAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
61 4 0.07
62 54 0.93
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.51
Consensus pattern (61 bp):
ACATGGTTTTGGCTTTGTTTTATTATTATTATTAACTTAATACATAAATTACTAATTATTA
Found at i:23065788 original size:40 final size:41
Alignment explanation
Indices: 23065739--23065835 Score: 128
Period size: 40 Copynumber: 2.4 Consensus size: 41
23065729 TGGCTATGCT
*
23065739 TGGCACTAAGTGTGCG-GTTTAATATAGCTTCGGCTACA-AA
1 TGGCACTAAGTGTGCGAGTTGAA-ATAGCTTCGGCTACATAA
* * *
23065779 TGGCTCTAAGTGTGCGAGTTGGAATAGCTTCGGCTATATAA
1 TGGCACTAAGTGTGCGAGTTGAAATAGCTTCGGCTACATAA
23065820 -GGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
23065836 TACGGACTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 44 0.88
41 6 0.12
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTGAAATAGCTTCGGCTACATAA
Found at i:23071162 original size:22 final size:22
Alignment explanation
Indices: 23071109--23071220 Score: 113
Period size: 22 Copynumber: 5.0 Consensus size: 22
23071099 AGCTGATGGT
* *
23071109 CAGTAAGCTTTATTGAGCTGAAA
1 CAGTAAGCTCTATCGAGCTG-AA
*
23071132 CGGTAAGCTCTATCGAGCTGAA
1 CAGTAAGCTCTATCGAGCTGAA
23071154 CAGTAAGCTC-ATACGAGCTGAA
1 CAGTAAGCTCTAT-CGAGCTGAA
*
23071176 CAATAAGCTC-ATACGAGCTGAAAA
1 CAGTAAGCTCTAT-CGAGCTG--AA
23071200 CAGTAAGCTCTTAT-GAGCTGA
1 CAGTAAGCTC-TATCGAGCTGA
23071221 TATATCAATA
Statistics
Matches: 78, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.03
22 40 0.51
23 17 0.22
24 17 0.22
26 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (22 bp):
CAGTAAGCTCTATCGAGCTGAA
Found at i:23071218 original size:46 final size:45
Alignment explanation
Indices: 23071109--23071245 Score: 145
Period size: 46 Copynumber: 3.0 Consensus size: 45
23071099 AGCTGATGGT
**
23071109 CAGTAAGCT-TTATTGAGCTGAAACGGTAAGCTC-TATCGAGCTGAA
1 CAGTAAGCTCTTA-TGAGCTGAAACAATAAGCTCATA-CGAGCTGAA
* *
23071154 CAGTAAGCTCATACGAGCTG-AACAATAAGCTCATACGAGCTGAAAA
1 CAGTAAGCTCTTATGAGCTGAAACAATAAGCTCATACGAGCTG--AA
*
23071200 CAGTAAGCTCTTATGAGCTGATATATCAATAAGCTGATACGAGCTG
1 CAGTAAGCTCTTATGAGCTGA-A-A-CAATAAGCTCATACGAGCTG
23071246 TGGTGAGTCT
Statistics
Matches: 77, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
44 17 0.22
45 17 0.22
46 22 0.29
48 1 0.01
49 1 0.01
50 19 0.25
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (45 bp):
CAGTAAGCTCTTATGAGCTGAAACAATAAGCTCATACGAGCTGAA
Found at i:23077973 original size:232 final size:232
Alignment explanation
Indices: 23077567--23078032 Score: 932
Period size: 232 Copynumber: 2.0 Consensus size: 232
23077557 AAATTAAAAA
23077567 TGAATTTAGTCCATCATTCTTTCGACTAGCTGTTTATTGAAGAAGAAAAGAAGCCATTGATGAAC
1 TGAATTTAGTCCATCATTCTTTCGACTAGCTGTTTATTGAAGAAGAAAAGAAGCCATTGATGAAC
23077632 ACTTAGGGTTCGACGCTTAGTAGGCTTAATTGAGGTATGTTTTGAGCTCGGTTTTTGATAATTTT
66 ACTTAGGGTTCGACGCTTAGTAGGCTTAATTGAGGTATGTTTTGAGCTCGGTTTTTGATAATTTT
23077697 TACTTTTTTGAGATCGTTGCTTAGAATACTAGCTATTCCATGCTTGAATTTTTGAATTGGTTGTA
131 TACTTTTTTGAGATCGTTGCTTAGAATACTAGCTATTCCATGCTTGAATTTTTGAATTGGTTGTA
23077762 GATTTTGAGATTTTCCATTGGTGATAGCTTGAGATTT
196 GATTTTGAGATTTTCCATTGGTGATAGCTTGAGATTT
23077799 TGAATTTAGTCCATCATTCTTTCGACTAGCTGTTTATTGAAGAAGAAAAGAAGCCATTGATGAAC
1 TGAATTTAGTCCATCATTCTTTCGACTAGCTGTTTATTGAAGAAGAAAAGAAGCCATTGATGAAC
23077864 ACTTAGGGTTCGACGCTTAGTAGGCTTAATTGAGGTATGTTTTGAGCTCGGTTTTTGATAATTTT
66 ACTTAGGGTTCGACGCTTAGTAGGCTTAATTGAGGTATGTTTTGAGCTCGGTTTTTGATAATTTT
23077929 TACTTTTTTGAGATCGTTGCTTAGAATACTAGCTATTCCATGCTTGAATTTTTGAATTGGTTGTA
131 TACTTTTTTGAGATCGTTGCTTAGAATACTAGCTATTCCATGCTTGAATTTTTGAATTGGTTGTA
23077994 GATTTTGAGATTTTCCATTGGTGATAGCTTGAGATTT
196 GATTTTGAGATTTTCCATTGGTGATAGCTTGAGATTT
23078031 TG
1 TG
23078033 TGGTTTGATG
Statistics
Matches: 234, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
232 234 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (232 bp):
TGAATTTAGTCCATCATTCTTTCGACTAGCTGTTTATTGAAGAAGAAAAGAAGCCATTGATGAAC
ACTTAGGGTTCGACGCTTAGTAGGCTTAATTGAGGTATGTTTTGAGCTCGGTTTTTGATAATTTT
TACTTTTTTGAGATCGTTGCTTAGAATACTAGCTATTCCATGCTTGAATTTTTGAATTGGTTGTA
GATTTTGAGATTTTCCATTGGTGATAGCTTGAGATTT
Found at i:23078736 original size:43 final size:43
Alignment explanation
Indices: 23078648--23078741 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
23078638 TGTGATTACA
* *
23078648 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTATG
1 TGTAAGACCATGTCTGGGACATTAGCATTGTAATGAGATTATG
** * *
23078691 TGTAAGACCATGTCTGGGACATTATTATTGTTAAT-CGATTTTG
1 TGTAAGACCATGTCTGGGACATTAGCATTG-TAATGAGATTATG
23078734 TGTAAGAC
1 TGTAAGAC
23078742 TCTGTCTAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
43 41 0.93
44 3 0.07
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTAGCATTGTAATGAGATTATG
Found at i:23085064 original size:55 final size:55
Alignment explanation
Indices: 23084966--23085076 Score: 143
Period size: 55 Copynumber: 2.0 Consensus size: 55
23084956 CGAACATGCC
* *
23084966 AAAACAACACGGGCGTGTGACACGCTTGTGTGGAAGAACCGTGGGTGAACCTGTT
1 AAAACAACACGAGCGTGTGACACGCTTGTGTGCAAGAACCGTGGGTGAACCTGTT
* * * * *
23085021 AAAACAGCACGAGTGTGTGACACGCTTGTGT-CTAGCACTCGTGGTTGAACCTGTT
1 AAAACAACACGAGCGTGTGACACGCTTGTGTGCAAGAAC-CGTGGGTGAACCTGTT
23085076 A
1 A
23085077 GATTGACACG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 4 0.08
55 44 0.92
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (55 bp):
AAAACAACACGAGCGTGTGACACGCTTGTGTGCAAGAACCGTGGGTGAACCTGTT
Found at i:23091900 original size:40 final size:40
Alignment explanation
Indices: 23091854--23091949 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 40
23091844 GGTTGTTTTT
* *
23091854 GACACTTAGTGTGCGATATAATATAGCTTCGGCTATATAT
1 GACACTTAGTGTGCGATATAAGATAGCTTCGGCTATATAA
* * * * *
23091894 GGCACTTAGTGTGCGGTTTGAGATAGCTTCGGCTATGTAA
1 GACACTTAGTGTGCGATATAAGATAGCTTCGGCTATATAA
23091934 GACACTTAGTGTGCGA
1 GACACTTAGTGTGCGA
23091950 GATATTGAGT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (40 bp):
GACACTTAGTGTGCGATATAAGATAGCTTCGGCTATATAA
Found at i:23107015 original size:45 final size:44
Alignment explanation
Indices: 23106965--23107051 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 44
23106955 CCAAAACATG
23106965 TGTCACATATAT-TACGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCT-CGAACTCAGACCACAACTC-ATGAGTTCAGA
* *
23107010 TGTCACATATATCTTGAACTCATACCACAACTCATGAGTTCA
1 TGTCACATATATCTCGAACTCAGACCACAACTCATGAGTTCA
23107052 AATAACATAG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
44 9 0.23
45 29 0.74
46 1 0.03
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (44 bp):
TGTCACATATATCTCGAACTCAGACCACAACTCATGAGTTCAGA
Found at i:23109649 original size:22 final size:21
Alignment explanation
Indices: 23109611--23109655 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
23109601 TTGATCCTCA
* *
23109611 CTTTTCTTTCTTCCACATTTT
1 CTTTTCTTTCATCCACAATTT
*
23109632 CTTTTCTTTTCATGCACAATTT
1 CTTTTC-TTTCATCCACAATTT
23109654 CT
1 CT
23109656 AACAAGAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.13, C:0.27, G:0.02, T:0.58
Consensus pattern (21 bp):
CTTTTCTTTCATCCACAATTT
Found at i:23118226 original size:40 final size:40
Alignment explanation
Indices: 23118181--23118348 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
23118171 CGGAATACAA
23118181 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
23118221 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * ** *
23118261 CCGAATATAACAACTTGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
23118301 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
23118341 CCGGATAT
1 CCGGATAT
23118349 CATTCAATTG
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
39 4 0.04
40 104 0.96
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:23118321 original size:80 final size:80
Alignment explanation
Indices: 23118201--23118348 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 80
23118191 CCACACGCAC
* *
23118201 GAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGCCCGAA
1 GAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACCCGAA
23118266 TATAACAACTTGCAT
66 TATAACAACTTGCAT
* *
23118281 GAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAATTGCCTTCGGGTCTTAACCCG
1 GAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAATGCCTTCGGGTATTAACCCG
*
23118344 GATAT
64 AATAT
23118349 CATTCAATTG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 1 0.02
79 2 0.03
80 58 0.95
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
GAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATGCCTTCGGGTATTAACCCGAA
TATAACAACTTGCAT
Found at i:23126223 original size:40 final size:39
Alignment explanation
Indices: 23126178--23126342 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 39
23126168 CGGAATACAA
* *
23126178 CCGGATATAACCACATGTACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
23126218 CCGGATATAACGACTCACACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACT-GCACGAATGCCTTCGGGTCTTAGC
23126258 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTA-C
1 CCGGATATAACAAC-TGCACGAATGCCTTCGGGTCTTAGC
** *
23126297 CCGGATA-AA-GTCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACT-GCACGAA-TGCCTTCGGGTCTTAGC
23126335 CCGGATAT
1 CCGGATAT
23126343 CATTCAATTG
Statistics
Matches: 108, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
36 3 0.03
37 20 0.19
38 10 0.09
39 9 0.08
40 65 0.60
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAACAACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:23141026 original size:40 final size:40
Alignment explanation
Indices: 23140953--23141160 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
23140943 CAATTGAATG
* * * * * *
23140953 ATATCCGGGCTAAGTCCTGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * *
23140993 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
23141033 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
23141073 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * **
23141113 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
23141153 ATATCCGG
1 ATATCCGG
23141161 TTGTTTTCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
39 5 0.04
40 133 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:23141096 original size:80 final size:80
Alignment explanation
Indices: 23140954--23141160 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
23140944 AATTGAATGA
* * * ** * ** * *
23140954 TATCCGGGCTAAGTCCTGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
23141019 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
23141032 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGC
* *
23141097 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
23141114 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
23141161 TTGTTTTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:23143937 original size:47 final size:47
Alignment explanation
Indices: 23143819--23143992 Score: 193
Period size: 45 Copynumber: 3.8 Consensus size: 47
23143809 TGGATATTTG
*
23143819 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAT
* *
23143867 -G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA-T
*
23143910 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 -GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGC-AAT
* *
23143959 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
23143993 TATGGGCGGG
Statistics
Matches: 109, Mismatches: 8, Indels: 20
0.80 0.06 0.15
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 2 0.02
45 30 0.28
46 30 0.28
47 30 0.28
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAT
Found at i:23143988 original size:46 final size:45
Alignment explanation
Indices: 23143824--23143997 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 45
23143814 ATTTGGGCAT
* *
23143824 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
* * *
23143869 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC---GC
23143914 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
*
23143962 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23143998 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
42 6 0.05
44 2 0.02
45 29 0.26
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:23146844 original size:15 final size:15
Alignment explanation
Indices: 23146824--23146892 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
23146814 GTATCTTGGG
23146824 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
23146839 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
23146854 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
23146869 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
23146884 TTTCTTTAT
1 TTTCTTTAT
23146893 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:23146893 original size:30 final size:30
Alignment explanation
Indices: 23146815--23146902 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
23146805 CATAGTATCG
* * * *
23146815 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
23146845 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
23146875 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
23146903 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:23149446 original size:45 final size:46
Alignment explanation
Indices: 23149283--23149457 Score: 223
Period size: 45 Copynumber: 3.8 Consensus size: 46
23149273 TATTTGGGCA
*
23149283 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
23149329 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
23149376 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
23149422 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23149458 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
43 6 0.05
45 38 0.34
46 30 0.27
47 29 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:23157372 original size:18 final size:16
Alignment explanation
Indices: 23157338--23157370 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
23157328 TTCGACTTTA
23157338 ACACATATTTATATAT
1 ACACATATTTATATAT
*
23157354 ACACATATATATATAT
1 ACACATATTTATATAT
23157370 A
1 A
23157371 TATATCCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (16 bp):
ACACATATTTATATAT
Found at i:23159691 original size:28 final size:28
Alignment explanation
Indices: 23159660--23159758 Score: 128
Period size: 28 Copynumber: 3.5 Consensus size: 28
23159650 CTGACCGATC
*
23159660 TCGCACACATATTGCTCGGTTAAAGAAT
1 TCGCACACATAGTGCTCGGTTAAAGAAT
** * *
23159688 TCGCACACATAGTGCTCACTGACAG-AT
1 TCGCACACATAGTGCTCGGTTAAAGAAT
23159715 CTCGCACACATAGTGCTCGGTTAAAGAAT
1 -TCGCACACATAGTGCTCGGTTAAAGAAT
*
23159744 TCGCACACACAGTGC
1 TCGCACACATAGTGC
23159759 CTCAATTCAT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.03
28 55 0.93
29 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGGTTAAAGAAT
Found at i:23159695 original size:56 final size:56
Alignment explanation
Indices: 23159634--23159759 Score: 216
Period size: 56 Copynumber: 2.2 Consensus size: 56
23159624 AACGAAATCT
* *
23159634 GCACACACAGTGCCCACTGACCGATCTCGCACACATATTGCTCGGTTAAAGAATTC
1 GCACACACAGTGCCCACTGACAGATCTCGCACACATAGTGCTCGGTTAAAGAATTC
* *
23159690 GCACACATAGTGCTCACTGACAGATCTCGCACACATAGTGCTCGGTTAAAGAATTC
1 GCACACACAGTGCCCACTGACAGATCTCGCACACATAGTGCTCGGTTAAAGAATTC
23159746 GCACACACAGTGCC
1 GCACACACAGTGCC
23159760 TCAATTCATT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (56 bp):
GCACACACAGTGCCCACTGACAGATCTCGCACACATAGTGCTCGGTTAAAGAATTC
Found at i:23159782 original size:25 final size:25
Alignment explanation
Indices: 23159742--23159796 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
23159732 CGGTTAAAGA
23159742 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
* *
23159767 ATTCGCACCCATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
23159792 ATTCG
1 ATTCG
23159797 TTATTACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:23160032 original size:43 final size:43
Alignment explanation
Indices: 23159915--23160054 Score: 172
Period size: 43 Copynumber: 3.3 Consensus size: 43
23159905 CTTTGCTCGA
** * *
23159915 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCAAATACAC
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAC
** *
23159958 ATCACCGGCATGAAGCCTGCTAGGAACGAAGGCCCGAATACAC
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * * *
23160001 ATCACCAGCACAAAGCCTGCTAGGCATGAAGGCCTGATTACAC
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
23160044 ATTACCGGCAC
1 ATCACCGGCAC
23160055 GAATGCTCTT
Statistics
Matches: 84, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.33, C:0.31, G:0.21, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:23160095 original size:40 final size:40
Alignment explanation
Indices: 23160051--23160206 Score: 249
Period size: 40 Copynumber: 3.9 Consensus size: 40
23160041 CACATTACCG
* * *
23160051 GCACGAATGCTCTTCAGGACTTAGCCTGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
*
23160091 GCACGAATGCTCTTCGGGACTTAGCCTGGATATAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
* *
23160131 GCACGAATGCTCTTCGGGACTTAGCCCGGCTATAACACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
*
23160171 GCCCGAATGCTCTTCGGGACTTAGCCCGGATATAAC
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
23160207 TCTCAATTCT
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCA
Found at i:23162543 original size:2 final size:2
Alignment explanation
Indices: 23162536--23162567 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
23162526 ACTTTAACAC
*
23162536 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23162568 CCCTTTCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:23165327 original size:28 final size:28
Alignment explanation
Indices: 23165287--23165444 Score: 253
Period size: 28 Copynumber: 5.6 Consensus size: 28
23165277 CGCATACTTG
*
23165287 ATGTCTCGCACACTAAGTGCCACAATCA
1 ATGTCTCGCACACTAAGTGCCATAATCA
* *
23165315 ATGTCTCGCACACTAATTGCCACAATCA
1 ATGTCTCGCACACTAAGTGCCATAATCA
*
23165343 ATGTCTCGCACACTAATTGCCATAATCA
1 ATGTCTCGCACACTAAGTGCCATAATCA
23165371 ATGTCTCGCACACTAAGTGCCATAATCA
1 ATGTCTCGCACACTAAGTGCCATAATCA
* *
23165399 AAGTCTCGTACACTAAGTGCCATAATCA
1 ATGTCTCGCACACTAAGTGCCATAATCA
*
23165427 ATGTCTCGCGCACTAAGT
1 ATGTCTCGCACACTAAGT
23165445 ACTCTACATA
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 122 1.00
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
ATGTCTCGCACACTAAGTGCCATAATCA
Found at i:23168977 original size:93 final size:93
Alignment explanation
Indices: 23168864--23169035 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
23168854 ACCCATAAGT
* *
23168864 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
23168929 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* *
23168957 GAACTTGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
* * *
23169022 GGAGTTCGGATGCC
66 CGAGCTCAGATGCC
23169036 CAACTATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Done.