Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 83 of 425
Found at i:23897361 original size:71 final size:70
Alignment explanation
Indices: 23897160--23897357 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
23897150 CGATTTGTCT
* * * *
23897160 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
23897225 CTTTCA
65 CTTTCA
* * * *
23897231 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
23897296 CTTTCA
65 CTTTCA
* *
23897302 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
23897358 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:23904808 original size:71 final size:71
Alignment explanation
Indices: 23904722--23904885 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
23904712 CGATTTGTCT
23904722 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
23904787 CTTTCA
66 CTTTCA
23904793 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
23904858 CTTTCA
66 CTTTCA
23904864 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
23904886 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:23904923 original size:71 final size:70
Alignment explanation
Indices: 23904722--23904919 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
23904712 CGATTTGTCT
* * * *
23904722 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
23904787 CTTTCA
65 CTTTCA
* * * *
23904793 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
23904858 CTTTCA
65 CTTTCA
* *
23904864 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
23904920 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:23908554 original size:158 final size:158
Alignment explanation
Indices: 23908266--23908580 Score: 594
Period size: 158 Copynumber: 2.0 Consensus size: 158
23908256 GCCTAAGTGG
*
23908266 TCAGGCCGTGTACTACACTCGCCCATGTCCCTAACCCGTGTAATTCTCTGACTTTTAAGGCATGA
1 TCAGGCCGTGTACTACACTCGCCCATGTCCCTAACCCGTGTAACTCTCTGACTTTTAAGGCATGA
23908331 AGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGGCAAATTTTATTTT
66 AGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGGCAAATTTTATTTT
23908396 CGAATTTTAGGTGCAGTTTTCATACGGT
131 CGAATTTTAGGTGCAGTTTTCATACGGT
*
23908424 TCAGGCCGTGTACTACACTCGCCCGTGTCCCTAACCCGTGTAACTCTCTGACTTTTAAGGCATGA
1 TCAGGCCGTGTACTACACTCGCCCATGTCCCTAACCCGTGTAACTCTCTGACTTTTAAGGCATGA
* *
23908489 AGAAATTAAAGTAAGACGGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGGCAAATTTTATTTT
66 AGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGGCAAATTTTATTTT
23908554 CGAATTTTAGGTGCAGTTTTCATACGG
131 CGAATTTTAGGTGCAGTTTTCATACGG
23908581 CCGTGTAACA
Statistics
Matches: 153, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
158 153 1.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (158 bp):
TCAGGCCGTGTACTACACTCGCCCATGTCCCTAACCCGTGTAACTCTCTGACTTTTAAGGCATGA
AGAAATTAAAGTAACACCGCCAAGTCAGACGCCCGTGTGCTAGGCTGTGTGGCAAATTTTATTTT
CGAATTTTAGGTGCAGTTTTCATACGGT
Found at i:23911093 original size:2 final size:2
Alignment explanation
Indices: 23911086--23911110 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23911076 ATGGTAGAAG
23911086 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
23911111 AAACAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23914511 original size:15 final size:17
Alignment explanation
Indices: 23914493--23914524 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
23914483 TAGCATAATT
23914493 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
23914508 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
23914525 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:23928545 original size:15 final size:17
Alignment explanation
Indices: 23928527--23928558 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
23928517 TAGCATGTTT
23928527 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
23928542 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
23928559 AAAGTGTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:23936747 original size:36 final size:36
Alignment explanation
Indices: 23936679--23936747 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
23936669 AACTCTATCC
* * *
23936679 AGTTCAGCGGCCTTTCAGATCTATATTGACTGACTT
1 AGTTCAACAGCCTTTCAGATCTATATTAACTGACTT
23936715 AGTTCAACAGCCTTTCAGATCTAT-TCTAACTGA
1 AGTTCAACAGCCTTTCAGATCTATAT-TAACTGA
23936748 GGTGCTTCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 1 0.03
36 28 0.97
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (36 bp):
AGTTCAACAGCCTTTCAGATCTATATTAACTGACTT
Found at i:23939014 original size:15 final size:15
Alignment explanation
Indices: 23938996--23939025 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23938986 CCAAATTATT
23938996 AATGAAATATTTTAA
1 AATGAAATATTTTAA
*
23939011 AATGAATTATTTTAA
1 AATGAAATATTTTAA
23939026 TCATGCATGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (15 bp):
AATGAAATATTTTAA
Found at i:23947586 original size:46 final size:46
Alignment explanation
Indices: 23947519--23947696 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
23947509 TGTAACCCGC
* * * *
23947519 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGTTAGCAT
* * *
23947565 CCATAAGTGAACTCAGACTCAACTCAACTAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATG-TTAGCAT
* *** * * ** *
23947611 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGATGTTAGCAT
*
23947658 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATG
23947697 CCCAAACATC
Statistics
Matches: 103, Mismatches: 26, Indels: 6
0.76 0.19 0.04
Matches are distributed among these distances:
46 70 0.68
47 33 0.32
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGTTAGCAT
Found at i:23947658 original size:93 final size:93
Alignment explanation
Indices: 23947527--23947698 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
23947517 GCCCATAAGT
* ***
23947527 GAACTCGGACTCAACTCAATGAGCTCGGGTGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
23947592 CTAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
23947620 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
23947685 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
23947699 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:23947713 original size:46 final size:46
Alignment explanation
Indices: 23947570--23947713 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
23947560 CGCATCCATA
* *
23947570 AGTGAACTCAGACTCAACTCAACTAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * * *
23947619 --CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCAT
1 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
23947662 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
23947709 AGTGA
1 AGTGA
23947714 CATGTCATTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 33 0.44
47 27 0.36
48 6 0.08
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:23973721 original size:10 final size:10
Alignment explanation
Indices: 23973706--23973730 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23973696 GAATCTATCA
23973706 AAAATAAATC
1 AAAATAAATC
23973716 AAAATAAATC
1 AAAATAAATC
23973726 AAAAT
1 AAAAT
23973731 TTATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAAATC
Found at i:23976127 original size:28 final size:29
Alignment explanation
Indices: 23976060--23976160 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 29
23976050 ATAGTGAATC
*
23976060 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
23976089 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * *
23976117 CGCACACTTAGTGCTGTACAATTTTAAACT
1 CGCACACTTAGTGCTATATAA-TTCAAACT
23976147 CGCACACTTAGTGC
1 CGCACACTTAGTGC
23976161 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.35
29 20 0.31
30 20 0.31
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:23980396 original size:40 final size:40
Alignment explanation
Indices: 23980351--23980517 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
23980341 CGGAATATAA
23980351 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
23980391 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
23980431 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
23980471 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
23980510 CCGGATAT
1 CCGGATAT
23980518 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:23980501 original size:80 final size:79
Alignment explanation
Indices: 23980367--23980517 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
23980357 ATAATCACGT
*
23980367 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
23980432 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
23980447 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
23980510 CCGGATAT
64 CCGGATAT
23980518 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:23981362 original size:17 final size:19
Alignment explanation
Indices: 23981339--23981384 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
23981329 AAGAAGCATG
23981339 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
23981357 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
23981375 AATCATGCTC
1 AATCATGCTC
23981385 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:23988386 original size:40 final size:40
Alignment explanation
Indices: 23988341--23988507 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
23988331 CGGAATATAA
23988341 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
23988381 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
23988421 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
23988461 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
23988500 CCGGATAT
1 CCGGATAT
23988508 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:23988491 original size:80 final size:79
Alignment explanation
Indices: 23988357--23988507 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
23988347 ATAATCACGT
*
23988357 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
23988422 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
23988437 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
23988500 CCGGATAT
64 CCGGATAT
23988508 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:23989356 original size:17 final size:19
Alignment explanation
Indices: 23989333--23989378 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
23989323 AAGAAGCATG
23989333 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
23989351 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
23989369 AATCATGCTC
1 AATCATGCTC
23989379 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:23992563 original size:15 final size:15
Alignment explanation
Indices: 23992545--23992592 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
23992535 GGCTTGAAAG
23992545 TGTGCTCTATGAATA
1 TGTGCTCTATGAATA
*
23992560 TGTGC-CT-CGAA-A
1 TGTGCTCTATGAATA
23992572 GTGTGCTCTATGAATA
1 -TGTGCTCTATGAATA
23992588 TGTGC
1 TGTGC
23992593 CAAAAGGGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
12 1 0.04
13 8 0.30
14 4 0.15
15 13 0.48
16 1 0.04
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (15 bp):
TGTGCTCTATGAATA
Found at i:23992571 original size:28 final size:28
Alignment explanation
Indices: 23992529--23992593 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
23992519 CTGTTATATC
* *
23992529 ATATGTGGCTTGAAAGTGTGCTCTATGA
1 ATATGTGCCTCGAAAGTGTGCTCTATGA
23992557 ATATGTGCCTCGAAAGTGTGCTCTATGA
1 ATATGTGCCTCGAAAGTGTGCTCTATGA
23992585 ATATGTGCC
1 ATATGTGCC
23992594 AAAAGGGCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (28 bp):
ATATGTGCCTCGAAAGTGTGCTCTATGA
Found at i:23995938 original size:43 final size:43
Alignment explanation
Indices: 23995872--23996036 Score: 185
Period size: 43 Copynumber: 3.8 Consensus size: 43
23995862 AGCTCGTACA
* * *
23995872 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
* * * * *
23995915 ATGCCACTGTCCCAGGCAGGGTCTTACACGAAATCAAATA-CA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
*
23995957 ATTG-CAATGTACCAGACATGGTCTTACATGTAAATTTCAAAT-T-G
1 A-TGCCAATGTCCCAGACATGGTCTTACATG-AAA--TCAAATATCG
23996001 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
23996037 CTTATCGAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
41 3 0.03
42 23 0.23
43 43 0.43
44 26 0.26
45 6 0.06
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:23999318 original size:18 final size:18
Alignment explanation
Indices: 23999275--23999319 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
23999265 GGTTTTTCTA
*
23999275 AAATTTCTAGTGATTTTCC
1 AAATTTCTAGTGA-TCTCC
23999294 AAATTTCTAGTGA-CTCC
1 AAATTTCTAGTGATCTCC
23999311 ATAATTTCT
1 A-AATTTCT
23999320 TTGCATCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 7 0.29
19 13 0.54
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (18 bp):
AAATTTCTAGTGATCTCC
Found at i:23999838 original size:53 final size:54
Alignment explanation
Indices: 23999758--23999961 Score: 194
Period size: 53 Copynumber: 3.8 Consensus size: 54
23999748 TTCCTTTTTA
* * *
23999758 AACTTACCATTGTCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
23999811 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
23999865 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
23999920 AACTTACCAATGCCATGCCTTGGCATAGTCATACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
23999962 TTTAAACCTT
Statistics
Matches: 117, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 45 0.38
54 33 0.28
55 39 0.33
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:24002145 original size:36 final size:37
Alignment explanation
Indices: 24002105--24002175 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
24002095 CCACGAGAAA
24002105 GATTTTGT-AAAAACCTTGTGATTATTGGTCTATAAT
1 GATTTTGTGAAAAACCTTGTGATTATTGGTCTATAAT
*
24002141 GATTTTGTGCAAAACCTTGTGATTATTGGTCTATA
1 GATTTTGTGAAAAACCTTGTGATTATTGGTCTATA
24002176 CTTGTGATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 8 0.24
37 25 0.76
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.44
Consensus pattern (37 bp):
GATTTTGTGAAAAACCTTGTGATTATTGGTCTATAAT
Found at i:24005677 original size:94 final size:93
Alignment explanation
Indices: 24005439--24005707 Score: 248
Period size: 94 Copynumber: 2.9 Consensus size: 93
24005429 AAGGTAAGGT
* *
24005439 GCCGATGCCATGTCCTAGACATAGTCTTACAC-GGC-CTCATATTGCA-ACTCGATGCCATGTCC
1 GCCGATGCCATGTCCTAGACAT-GTCTTACACTGGCTCTCATAATG-AGGC-CGATG-CATGTCC
* *
24005501 CAGACATGGTTTTACACT-GACTATCATCTCATA
62 CAGACAT-GTCTTACACTAG-CGATCATCTCATA
* * * * * *
24005534 GCCGATG-TATGTCCCAGACATGTCTTACATTGGCT-TACGT-CTCGAGGCCGATGCATATCCCA
1 GCCGATGCCATGTCCTAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATGCATGTCCCA
* *
24005596 AACATGTCTTACACTAGCGCTCATCTCA-A
64 GACATGTCTTACACTAGCGATCATCTCATA
* * *
24005625 TGTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCTA
1 -GCCGATGCCATGTCCTAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCA
*
24005690 GACATTTCTTACACTAGC
64 GACATGTCTTACACTAGC
24005708 TCACACACAA
Statistics
Matches: 141, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
91 1 0.01
92 24 0.17
93 33 0.23
94 70 0.50
95 13 0.09
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
GCCGATGCCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCGATCATCTCATA
Found at i:24005688 original size:47 final size:47
Alignment explanation
Indices: 24005439--24005709 Score: 163
Period size: 46 Copynumber: 5.8 Consensus size: 47
24005429 AAGGTAAGGT
* * *
24005439 GCCGATGCCATGTCCTAGACATAGTCTTACAC-GGC-CTCATATTGCA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTA
* * * * * *
24005485 ACTCGATGCCATGTCCCAGACATGGTTTTACACTGACTATCAT-CTCATA
1 GC-CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAAT-GTA
* * * *
24005534 GCCGATG-TATGTCCCAGACATGTCTTACATTGGCT-TACGT-CTCG-A
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GTA
* *
24005579 GGCCGATG-CATATCCCAAACATGTCTTACACTAGCGCTCATC-TCAATGT-
1 -GCCGATGCCATGTCCCAGACATGTCTTACACT-G-GCTC-TCAT-AATGTA
* *
24005628 --CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTA
* * *
24005674 GCCGATG-CATGTCCTAGACATTTCTTACACTAGCTC
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTC
24005710 ACACACAAAT
Statistics
Matches: 180, Mismatches: 26, Indels: 38
0.74 0.11 0.16
Matches are distributed among these distances:
45 9 0.05
46 67 0.37
47 67 0.37
48 27 0.15
49 8 0.04
50 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTA
Found at i:24012297 original size:41 final size:42
Alignment explanation
Indices: 24012252--24012331 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
24012242 GCCGAACCAC
24012252 ACGCCCAT-GGGTAGACCGTGTGTCACACACAGCCTAGACTT
1 ACGCCCATGGGGTAGACCGTGTGTCACACACAGCCTAGACTT
*
24012293 ACGCCCATGGGGTAGACCGTGTGTCACACACGGCCTAGA
1 ACGCCCATGGGGTAGACCGTGTGTCACACACAGCCTAGA
24012332 TACACGCTCG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
41 8 0.22
42 29 0.78
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (42 bp):
ACGCCCATGGGGTAGACCGTGTGTCACACACAGCCTAGACTT
Found at i:24013133 original size:47 final size:47
Alignment explanation
Indices: 24013058--24013163 Score: 119
Period size: 47 Copynumber: 2.3 Consensus size: 47
24013048 GCCATGTCCA
* * * *
24013058 AGACACGGTCTTACACTGGCTCATATCTC-AAGTCGATGTCATGCCCC
1 AGACATGGTCTTACACTGACTCATATCTCGAAGCCGATG-AATGCCCC
* *
24013105 AGACATGGTCTTACACTGACT-ATCATCTCGTAGCCGATGAATGTCCC
1 AGACATGGTCTTACACTGACTCAT-ATCTCGAAGCCGATGAATGCCCC
24013152 AGACAT-GTCTTA
1 AGACATGGTCTTA
24013164 TACTAGCTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
46 8 0.16
47 36 0.71
48 7 0.14
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
AGACATGGTCTTACACTGACTCATATCTCGAAGCCGATGAATGCCCC
Found at i:24013224 original size:46 final size:46
Alignment explanation
Indices: 24013091--24013310 Score: 151
Period size: 46 Copynumber: 4.7 Consensus size: 46
24013081 TATCTCAAGT
* ** *
24013091 CGATGTCATGCCCCAGACATGGTCTTACACT-GACTATCATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CCCTCGTCTCG-ACGC
* * * *
24013139 CGATGAATGTCCCAGACATGTCTTATACTAG-CTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCCT-CGTCTCGACGC
* * * *
24013185 TGATGCATGTCCTAGACATGTCTTACACTAGCCCTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCGACGC
* * * * * * * * *
24013231 CAATGTCATGTCCTAAACATGGTCTTACACTGGCTCTCATAAT-GTCAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCGT-CTCGACGC
24013279 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
24013311 TCACACACGA
Statistics
Matches: 137, Mismatches: 28, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.01
46 68 0.50
47 40 0.29
48 26 0.19
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCGACGC
Found at i:24015103 original size:135 final size:135
Alignment explanation
Indices: 24014861--24015130 Score: 531
Period size: 135 Copynumber: 2.0 Consensus size: 135
24014851 GTGACACACG
24014861 ATCGTGTGTCCCCTATTGCTTTCAAAAGGGTTGCAAGTTAGGTTATTACACAGCCTAACACATGG
1 ATCGTGTGTCCCCTATTGCTTTCAAAAGGGTTGCAAGTTAGGTTATTACACAGCCTAACACATGG
24014926 TCTGGCACACAGGTGTGTGAGGTTCCTTCGAAGGGTACACGGCCTAGCACACAGGCGTATGGCTT
66 TCTGGCACACAGGTGTGTGAGGTTCCTTCGAAGGGTACACGGCCTAGCACACAGGCGTATGGCTT
24014991 GGCCA
131 GGCCA
*
24014996 ATCGTGTGTCCCCTGTTGCTTTCAAAAGGGTTGCAAGTTAGGTTATTACACAGCCTAACACATGG
1 ATCGTGTGTCCCCTATTGCTTTCAAAAGGGTTGCAAGTTAGGTTATTACACAGCCTAACACATGG
24015061 TCTGGCACACAGGTGTGTGAGGTTCCTTCGAAGGGTACACGGCCTAGCACACAGGCGTATGGCTT
66 TCTGGCACACAGGTGTGTGAGGTTCCTTCGAAGGGTACACGGCCTAGCACACAGGCGTATGGCTT
24015126 GGCCA
131 GGCCA
24015131 TGTGACCAAG
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 134 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (135 bp):
ATCGTGTGTCCCCTATTGCTTTCAAAAGGGTTGCAAGTTAGGTTATTACACAGCCTAACACATGG
TCTGGCACACAGGTGTGTGAGGTTCCTTCGAAGGGTACACGGCCTAGCACACAGGCGTATGGCTT
GGCCA
Found at i:24018102 original size:23 final size:22
Alignment explanation
Indices: 24018060--24018103 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
24018050 TTAAAAATTA
*
24018060 TTTATATTAATATTTTATAAAC
1 TTTATATTAATATTTCATAAAC
24018082 TTTATAATTAA-ATTTACATAAA
1 TTTAT-ATTAATATTT-CATAAA
24018104 AATATTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTATATTAATATTTCATAAAC
Found at i:24019373 original size:19 final size:20
Alignment explanation
Indices: 24019327--24019378 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
24019317 TAATTTTAGA
*
24019327 TATTTTATAAAAAAATTATTT
1 TATTTT-TAATAAAATTATTT
24019348 T-TATTTTAATAAAA-TATTT
1 TAT-TTTTAATAAAATTATTT
*
24019367 TATTTTTTATAA
1 TATTTTTAATAA
24019379 TTAATTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 14 0.52
20 9 0.33
21 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTTTTAATAAAATTATTT
Found at i:24019374 original size:20 final size:21
Alignment explanation
Indices: 24019327--24019375 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
24019317 TAATTTTAGA
*
24019327 TATTTTATAAAAAAATTATTT
1 TATTTTTTAAAAAAATTATTT
* *
24019348 T-TATTTTAATAAAA-TATTT
1 TATTTTTTAAAAAAATTATTT
24019367 TATTTTTTA
1 TATTTTTTA
24019376 TAATTAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 6 0.26
20 16 0.70
21 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTTTTAAAAAAATTATTT
Found at i:24019379 original size:22 final size:21
Alignment explanation
Indices: 24019329--24019379 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 21
24019319 ATTTTAGATA
24019329 TTTTATAA-AAAAATTATTTT
1 TTTTATAATAAAAATTATTTT
24019349 TATTT-TAATAAAATATT-TTATT
1 T-TTTATAATAAAA-ATTATT-TT
24019371 TTTTATAAT
1 TTTTATAAT
24019380 TAATTTAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 4 0.15
21 12 0.46
22 10 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTATAATAAAAATTATTTT
Found at i:24020659 original size:39 final size:37
Alignment explanation
Indices: 24020562--24020675 Score: 110
Period size: 39 Copynumber: 3.1 Consensus size: 37
24020552 TATGGTATTT
* * *
24020562 AAAATATATATAT-ATATATATATATAATAGTATTTA
1 AAAATATATACATAATATATATATATAATAGCATTAA
* * * *
24020598 AGAATATATACATAAGAAATATATAACTAATGGCATTAA
1 AAAATATATACATAATATATATAT-A-TAATAGCATTAA
*
24020637 AAAATATATACATAATATATATA-A-AATA-CATAAA
1 AAAATATATACATAATATATATATATAATAGCATTAA
24020671 AAAAT
1 AAAAT
24020676 TATTAATACA
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
34 10 0.16
35 3 0.05
36 11 0.17
37 9 0.14
38 1 0.02
39 29 0.46
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (37 bp):
AAAATATATACATAATATATATATATAATAGCATTAA
Found at i:24020981 original size:18 final size:18
Alignment explanation
Indices: 24020955--24020998 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
24020945 AAATCATTTT
*
24020955 GAAGAGAGAAAAAAAAAA
1 GAAGGGAGAAAAAAAAAA
* * *
24020973 GAAGGGAGAAAGAAGAGA
1 GAAGGGAGAAAAAAAAAA
24020991 GAAGGGAG
1 GAAGGGAG
24020999 GGGGAAAAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (18 bp):
GAAGGGAGAAAAAAAAAA
Found at i:24022220 original size:91 final size:91
Alignment explanation
Indices: 24022113--24022279 Score: 228
Period size: 91 Copynumber: 1.8 Consensus size: 91
24022103 AATAGACAAT
* *
24022113 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCTCTCGCAATACGA
24022177 GTCGATTTTTTTGAAAGGTAAAAATTG
65 GTCGATTTTTTTGAAAGGTAAAAATTG
* * * * ** *
24022204 AAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCATCTCGTCTCTTGCAATACGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAG
*
24022269 TTGATTTTTTT
66 TCGATTTTTTT
24022280 TTTTTGACAA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
90 2 0.03
91 63 0.97
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (91 bp):
AAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAG
TCGATTTTTTTGAAAGGTAAAAATTG
Found at i:24022816 original size:319 final size:312
Alignment explanation
Indices: 24022205--24023955 Score: 1667
Period size: 319 Copynumber: 5.5 Consensus size: 312
24022195 TAAAAATTGA
* ** * ** * *
24022205 AAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCATCTCGTCTCTTGCAATACGAGT
1 AAAACAGAAATTGAAATTACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
24022270 TGATTTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCT
64 TGA-TTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCT
* * * * *
24022335 CTCGCAATATGAGTTGAATGTTTTTGAAAAATATAAATTTAAAAGTAGAAATTGAAATTAACTCA
128 CTCGCAATATGAGTTG-ATTTTTTTG-AAAA-AT-AA-TTAAAA-CAAAAATTGAAAATACCTCA
* * *
24022400 ACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAGAAATTGAA
187 GCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA-ACAGAAATTGAA
* * * **
24022465 AATACATCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT-TTTT
251 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATTTT
* * ** *
24022526 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCGTCTCTCGCAATACGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
24022591 AATTTTTTTTTTTGACAATAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
66 -ATTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
* * * *
24022656 CGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAAC
130 CGCAATATGAGTTG-ATTTTTTTG-AAAA-AT-AA-TTAAAA-CAAAAATTGAAAATACCTCAGC
* * * *
24022721 GTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATGGAAAA
189 GTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA-ACAGAAATTGAAAA
* * **
24022786 TACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTT-TTTT
253 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATTTT
* * * *
24022844 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAATTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
24022909 AATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCT
66 -ATTTTTTT------T-T---TTGACAA-CAGAAATTGAAATTACCTCAGCATGTCC-TGAGGCT
*
24022973 CAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-------A--AAGACAAAAATTGAAAATAC
118 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAATTAAAACAAAAATTGAAAATAC
* * ** *
24023028 CTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAAT
183 CTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAAT
*
24023093 TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGA
247 TGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTT--
24023158 AAAATATAAATT
308 ---AT-T---TT
24023170 GAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 -AAAA-CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAG
* * * **
24023234 TTGA------TTTTTGACAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCATT
63 TTGATTTTTTTTTTTGAC-AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACC
** *
24023293 TCTCTTAATATGAGTTGA--TTTTTGAAAAATAGATTGAAACACAAAAATTGACAATACCTCAGC
127 TCTCGCAATATGAGTTGATTTTTTTGAAAAATA-ATT-AAA-ACAAAAATTGAAAATACCTCAGC
**
24023356 GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAA
189 GTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAATTGAAAA
* ** *
24023420 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATA
253 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT----TATTTT
* * **
24023484 AATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 AA---AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * * **
24023549 TTGA--TTTTTTTTT-AAAGACAAAAATTGAAAATATCTTAGCATGTCTTGAGGCTCAACTCATT
63 TTGATTTTTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACC
* *
24023611 TCTCGCAATATGAGTTGATTTTTTTG-------A--AAGACAAAAATTGAAAATACCTCAGCATG
127 TCTCGCAATATGAGTTGATTTTTTTGAAAAATAATTAAAACAAAAATTGAAAATACCTCAGCGTG
* ** * * *
24023667 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAATTGAAATT
192 CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAAACAGAAATTGAAAAT
24023732 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATAT
254 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTT------TAT
24023797 AAATTT
310 ---TTT
* * *
24023803 AAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTTACCTCTCACAGTATGAGT
1 AAAA-CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
* * ** *
24023867 TGA----TTTTTTTGAAAAGCAGAAATTGAAAATACCTCAATATGTCTTGAGGCTCAACTCACCT
64 TGATTTTTTTTTTTGACAA-CAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCT
24023928 CTCGCAATATGAGTTGATTTTTTTGAAA
128 CTCGCAATATGAGTTGATTTTTTTGAAA
24023956 CAGAAATAAA
Statistics
Matches: 1241, Mismatches: 110, Indels: 160
0.82 0.07 0.11
Matches are distributed among these distances:
308 56 0.05
309 2 0.00
310 6 0.00
311 119 0.10
312 11 0.01
313 109 0.09
314 20 0.02
315 65 0.05
316 81 0.07
317 55 0.04
318 134 0.11
319 282 0.23
320 14 0.01
321 93 0.07
322 57 0.05
323 1 0.00
324 1 0.00
325 1 0.00
326 2 0.00
327 13 0.01
328 64 0.05
329 55 0.04
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (312 bp):
AAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTTTGAAAAATAATTAAAACAAAAATTGAAAATACCTCAGCGTGCCTT
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAG
CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATTTT
Found at i:24022886 original size:75 final size:75
Alignment explanation
Indices: 24022695--24022935 Score: 265
Period size: 75 Copynumber: 3.2 Consensus size: 75
24022685 TATAAATTTA
* * * *
24022695 AAAG-CAGAAATTGAAATTAACTCAACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
24022758 TGA-TTTTTTG
65 TGATTTTTTTG
* * * * * **
24022768 AAAGACAAAAATGGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
24022833 GATTTTTTTTT
66 GA-TTTTTTTG
* * *
24022844 ACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAATT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
24022908 GAATTTTTTTG
66 G-ATTTTTTTG
* * *
24022919 AAAAATATAAATTGAAA
1 AAAGACAGAAATTGAAA
24022936 AGCAGAAATT
Statistics
Matches: 136, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
73 4 0.03
74 49 0.36
75 63 0.46
76 20 0.15
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (75 bp):
AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTG
Found at i:24023023 original size:74 final size:74
Alignment explanation
Indices: 24022930--24023173 Score: 332
Period size: 74 Copynumber: 3.3 Consensus size: 74
24022920 AAAATATAAA
* *
24022930 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
24022995 GTTGA-TTTT
65 GTTGATTTTT
* * * **
24023004 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
24023069 GTTGATTTTT
65 GTTGATTTTT
* *
24023079 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAAAAATTGAAATTACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGA
24023143 GTTGAATTTTT
65 GTTG-ATTTTT
24023154 TTGAAAA-ATATAAATTGAAA
1 TTGAAAACA-A-AAATTGAAA
24023174 AGCAGAAATT
Statistics
Matches: 148, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
74 116 0.78
75 23 0.16
76 9 0.06
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (74 bp):
TTGAAAACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:24023200 original size:238 final size:238
Alignment explanation
Indices: 24022449--24023962 Score: 1496
Period size: 239 Copynumber: 6.4 Consensus size: 238
24022439 TGATTTTTTG
* * * * **
24022449 AAAGACAGAAATTGAAAATACATCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAG-CAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
24022514 GATTTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCGTCTCTCG
65 GA---TTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCG
* * *
24022579 CAATACGAGTTGAATTTTTTTTTTTGACAATAGAAATTGAAATTACCTCAGCATGTCCTGAGGCT
127 CAATATGAGTTG-A---TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
*
24022644 CAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTTA
188 CAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
* * * *
24022695 AAAGCAGAAATTGAAATTAACTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTG
1 AAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * * *
24022760 ATTTTTTGAAAGACAAAAATGGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAA
66 ATTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
*
24022825 TATGAGTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
130 TATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
* *
24022890 CCTCTTGCAATATGAATTGAATTTTTTTGAAAAATATAAATTGA
195 CCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
*
24022934 AAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
24022999 ATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAA
66 ATTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
24023064 TATGAGTTGA-TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
130 TATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
24023128 CCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
195 CCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
*
24023172 AAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * **
24023237 A-TTTTTGACAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCATTTCTCTTAA
66 ATTTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
* * * *
24023301 TATGAGTTGATTTTTGAAAAATAGATTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGA
130 TATGAGTTGATTTTT------T---TTGACA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGA
24023365 GGCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTG----------A---A
184 GGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
*
24023404 AAA-CAGAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAGCAGAAATTGAAAATACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
24023467 GATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTC
65 GATTTTT--------TGAA---AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
* * * * * * * *
24023532 ATTTCTCGCAATATGAGTTGATTTTTTTTTAAAGACAAAAATTGAAAATATCTTAGCATGTCTTG
119 ATTTCTCGCAATATGAGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTG
**
24023597 AGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTTTTG--------AAA--G-
183 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
* * * * **
24023641 --A-CAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * **
24023703 ATTTTTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 A---TTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGC
* * *
24023768 AATATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTACCTCAACGTG
128 AATATGAGTTG-A---TTTT------T-T---TTGACAA-CAGAAATTGAAATTACCTCAGCGTG
* * *
24023833 -CCTTGAGGCTCAACTTACCTCTCACAGTATGAGTTG-A----TTT------T-T---TTGA
178 TCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
** *
24023879 AAAGCAGAAATTGAAAATACCTCAATATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
24023944 ATTTTTTTG-AAACAGAAAT
66 A-TTTTTTGAAAACAGAAAT
24023963 AAAAACATCA
Statistics
Matches: 1111, Mismatches: 96, Indels: 130
0.83 0.07 0.10
Matches are distributed among these distances:
227 58 0.05
228 1 0.00
230 2 0.00
231 61 0.05
232 12 0.01
233 57 0.05
234 1 0.00
235 63 0.06
236 1 0.00
237 68 0.06
238 182 0.16
239 237 0.21
240 5 0.00
241 111 0.10
242 71 0.06
243 54 0.05
244 1 0.00
245 58 0.05
246 4 0.00
247 6 0.01
248 56 0.05
249 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (238 bp):
AAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAAT
ATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
Found at i:24023262 original size:73 final size:73
Alignment explanation
Indices: 24023168--24023325 Score: 219
Period size: 73 Copynumber: 2.2 Consensus size: 73
24023158 AAAATATAAA
** *
24023168 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAATAGAAATTGAAATTACCTCAACGTGTCC-TGAAGCTCAACTCACCTCTCGCAATATG
24023232 AGTTGATTT
65 AGTTGATTT
* * ** **
24023241 TTGACAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCATTTCTCTTAATATGA
1 TTGAAAAATAGAAATTGAAATTACCTCAACGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
24023306 GTTGATTT
66 GTTGATTT
24023314 TTGAAAAATAGA
1 TTGAAAAATAGA
24023326 TTGAAACACA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
73 72 0.97
74 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (73 bp):
TTGAAAAATAGAAATTGAAATTACCTCAACGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:24023387 original size:158 final size:160
Alignment explanation
Indices: 24023004--24023949 Score: 1083
Period size: 158 Copynumber: 5.9 Consensus size: 160
24022994 AGTTGATTTT
* * * * **
24023004 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
24023069 GTTGATTTTTTTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
65 GTTGA-TTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
24023133 CGCAATATGAGTTGAATTTTTTTGAAAAATATAAA
129 CGCAATATGAGTTG-A--TTTTTGAAAAATATAAA
*
24023168 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * **
24023233 GTTGA-TTTTTGACAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCATTTCTC
65 GTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
** *
24023297 TTAATATGAGTTGATTTTTG-AAAA-ATAGA
130 GCAATATGAGTTGATTTTTGAAAAATATAAA
* **
24023326 TTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAA-ACAAAAATTGA-AATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATG
*
24023390 AGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 AGTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
24023454 CGCAATATGAGTTGATTTTTGAAAAACATAAA
129 CGCAATATGAGTTGATTTTTGAAAAATATAAA
* * * **
24023486 TTG--AACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * * **
24023549 TTGATTTTTTTTTA-AAGACAAAAATTGAAAATATCTTAGCATGTCTTGAGGCTCAACTCATTTC
66 TTGA--TTTTTTGACAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
24023613 TCGCAATATGAGTTGA--TTT------T-T---
128 TCGCAATATGAGTTGATTTTTGAAAAATATAAA
* * * * **
24023634 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
24023699 GTTGATTTTTTTTTTAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
65 GTTGA---TTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT
24023763 CTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAA
127 CTCGCAATATGAGTTG-A--TTTTTGAAAAATATAAA
* * * * *
24023800 TTTAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCACAGTATGA
1 TTGAAAA-CAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
*** *
24023865 GTTGATTTTTTTGA-AAAGCAGAAATTGAAAATACCTCAATATGTCTTGAGGCTCAACTCACCTC
65 GTTGA-TTTTTTGACAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
24023929 TCGCAATATGAGTTGATTTTT
128 TCGCAATATGAGTTGATTTTT
24023950 TTGAAACAGA
Statistics
Matches: 676, Mismatches: 72, Indels: 70
0.83 0.09 0.09
Matches are distributed among these distances:
148 3 0.00
150 1 0.00
151 114 0.17
152 12 0.02
156 5 0.01
157 53 0.08
158 140 0.21
159 13 0.02
160 75 0.11
162 15 0.02
163 59 0.09
164 72 0.11
165 57 0.08
166 57 0.08
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (160 bp):
TTGAAAACAAAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAATATAAA
Found at i:24023445 original size:73 final size:74
Alignment explanation
Indices: 24023326--24023793 Score: 508
Period size: 76 Copynumber: 6.1 Consensus size: 74
24023316 GAAAAATAGA
* * * *
24023326 TTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
24023391 GTTGA-TTT
66 GTTGATTTT
*
24023399 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
24023464 GTTGA-TTT
66 GTTGATTTT
* * * **
24023472 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
1 TTGAAAAAC---------A-A-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
24023537 TCGCAATATGAGTTGATTTTTT
55 TCGCAATATGAGTTGA--TTTT
* * * * * * **
24023559 TTTAAAGACAAAAATTGAAAATATCTTAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
24023624 GTTGATTTTT
66 GTTGA-TTTT
* * * **
24023634 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
24023699 GTTGATTTTTT
66 GTTGA--TTTT
** * * *
24023710 TTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
24023775 GTTGAATTTTT
66 GTTG-A-TTTT
24023786 TTGAAAAA
1 TTGAAAAA
24023794 TATAAATTTA
Statistics
Matches: 345, Mismatches: 34, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
73 77 0.22
75 72 0.21
76 128 0.37
77 2 0.01
78 1 0.00
82 1 0.00
84 54 0.16
87 10 0.03
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.32
Consensus pattern (74 bp):
TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:24023489 original size:632 final size:626
Alignment explanation
Indices: 24022201--24023949 Score: 1924
Period size: 632 Copynumber: 2.7 Consensus size: 626
24022191 AAGGTAAAAA
** * ** *
24022201 TTGAAAAACAGAAATT-GAAA--ATACCTCGGCGTGTGACCTGAGGCTCATCTCGTCTCTTGCAA
1 TTGAAAAACAGAAATTAGAAATTATACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAA
* * *** * *
24022263 TACGAGTTGATTTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCC-TGAGGCTCA
64 TATGAATTGATTTTTTTTTAAAGAC-A-A-AAATTGAAAATACCTCAACATG-CCTTGAGGCTCA
* * *
24022327 ACTCACCTCTCGCAATATGAGTTGAATGTTTTTGAAAAATATAAATTTAAAAGTAGAAATTGAAA
125 ACTCACCTCTCGCAATATGAGTTG-AT-TTTTT------T-GAAA---GACA--A-AAATTGAAA
* * * * * * ** * *
24022392 TTAACTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTTTGAAAGACA
175 ATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACA-ACA
* * * * **
24022456 GAAATTGAAAATACATCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-A-TTT
239 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
* * *
24022519 TTT------T-T---TTACAA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCG
304 TTTGAAAAATATAAATTAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCA
* *
24022572 TCTCTCGCAATACGAGTTGAATTTTTTTTTTTGAC-AATAGAAATTGAAATTACCTCAGCATGTC
368 CCTCTCGCAATATGAGTTG-A-----TTTTTTGACAAATAGAAATTGAAATTACCTCAGCATGTC
*
24022636 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCA
427 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTGAAAAATATAAATTGAAAAGCA
* ** * *
24022701 GAAATTGAAATTAACTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTT
489 AAAATTGAAATTAACTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * **
24022766 TGAAAGACAAAAATGGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
554 TGAAAAACAAAAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
24022831 TTGATTTTT
619 TTGA-TTTT
** * * *
24022840 TTTTACAACAGAAATT-GAAA-T-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATA
1 TTGAAAAACAGAAATTAGAAATTATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
* * *
24022902 TGAATTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTT
66 TGAATTG-ATTTTTTT------T-TAAA--G---A-CAAAAATTGAAAATACCTCAACATGCCTT
24022967 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAAAAATTGAAAATACCTC
117 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTC
24023031 AGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGA
182 AGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGA
24023096 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAA
247 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAA
24023161 ATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGC
312 ATATAAATT-AAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGC
* *
24023226 AATATGAGTTGA-TTTTTGACAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTC
376 AATATGAGTTGATTTTTTGACAAATAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTC
** ** * *
24023290 ATTTCTCTTAATATGAGTTGATTTTTG-AAAA-ATAGATTGAAACA-CAAAAATTGACAA-TACC
441 ACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAA-AGCAAAAATTGA-AATTAAC
* * *
24023351 TCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT
504 TCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATG
*
24023415 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
569 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * **
24023472 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
1 TTGAAAAACAGAAATT----AGAAATT---A-TACCTCAACGTGTCCTGAGGCTCAACTCACCTC
* * * * *
24023537 TCGCAATATGAGTTGATTTTTTTTTAAAGACAAAAATTGAAAATATCTTAGCATGTCTTGAGGCT
58 TCGCAATATGAATTGATTTTTTTTTAAAGACAAAAATTGAAAATACCTCAACATGCCTTGAGGCT
**
24023602 CAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATG
123 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATG
*
24023667 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAATTGAAATT
188 TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTGACAACAGAAATTGAAATT
24023732 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATAT
251 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATAT
* * *
24023797 AAATTTAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCACAGTA
316 AAA-TTAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATA
* * ** *
24023862 TGAGTTGATTTTTTTGA-AAAGCAGAAATTGAAAATACCTCAATATGTCTTGAGGCTCAACTCAC
380 TGAGTTGA-TTTTTTGACAAA-TAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCAC
24023926 CTCTCGCAATATGAGTTGATTTTT
443 CTCTCGCAATATGAGTTGATTTTT
24023950 TTGAAACAGA
Statistics
Matches: 962, Mismatches: 95, Indels: 111
0.82 0.08 0.10
Matches are distributed among these distances:
629 53 0.06
630 75 0.08
632 278 0.29
633 17 0.02
634 135 0.14
635 67 0.07
636 8 0.01
637 40 0.04
638 12 0.01
639 39 0.04
640 58 0.06
641 1 0.00
642 8 0.01
643 42 0.04
644 3 0.00
645 12 0.01
646 54 0.06
647 4 0.00
648 53 0.06
650 2 0.00
651 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (626 bp):
TTGAAAAACAGAAATTAGAAATTATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
TGAATTGATTTTTTTTTAAAGACAAAAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGG
CTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTAAAAG
CAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTGACAAATAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGAAAAATATAAATTGAAAAGCAAAAATTGAAATTAACTCAACGTGCCCCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATGGAAAATACCTCAGCATG
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
Found at i:24023875 original size:90 final size:89
Alignment explanation
Indices: 24023718--24023881 Score: 267
Period size: 90 Copynumber: 1.8 Consensus size: 89
24023708 TTTTTTACAA
* *
24023718 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG-ATT
24023783 TTTTTGAAAAATATAAATTTAAAAG
65 TTTTTGAAAAATATAAATTTAAAAG
* *
24023808 CAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTTACCTCTCACAGTATGAGTTGATT
1 CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCACAATATGAGTTGATT
24023872 TTTTTGAAAA
65 TTTTTGAAAA
24023882 GCAGAAATTG
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
89 15 0.22
90 54 0.78
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (89 bp):
CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
TTTTGAAAAATATAAATTTAAAAG
Found at i:24023891 original size:75 final size:75
Alignment explanation
Indices: 24023803--24023962 Score: 243
Period size: 75 Copynumber: 2.2 Consensus size: 75
24023793 ATATAAATTT
* * * *
24023803 AAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCACAGTATGAGTT
1 AAAAGCAGAAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTT
24023868 GATTTTTTTG
66 GATTTTTTTG
* * *
24023878 AAAAGCAGAAATTGAAAATACCTCAATATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAGCAGAAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTT
24023943 GATTTTTTTG
66 GATTTTTTTG
24023953 -AAA-CAGAAAT
1 AAAAGCAGAAAT
24023963 AAAAACATCA
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
73 7 0.09
74 3 0.04
75 68 0.87
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (75 bp):
AAAAGCAGAAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTT
GATTTTTTTG
Found at i:24023931 original size:165 final size:164
Alignment explanation
Indices: 24023645--24023955 Score: 444
Period size: 165 Copynumber: 1.9 Consensus size: 164
24023635 TGAAAGACAA
* * ** *
24023645 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTT
* * * * *
24023710 TTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
65 TTTGAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
24023775 GTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAG
130 GTTG-ATTTTTTTGAAAAATATAAATTTAAAAGCAG
* * * *
24023811 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCACAGTATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
* *
24023875 TTGAAAAGCAGAAATTGAAAATACCTCAATATGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
66 TTGAAAA-CAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
24023940 GTTGATTTTTTTGAAA
130 GTTGATTTTTTTGAAA
24023956 CAGAAATAAA
Statistics
Matches: 128, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
164 22 0.17
165 56 0.44
166 50 0.39
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.33
Consensus pattern (164 bp):
AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
TTGAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAAATATAAATTTAAAAGCAG
Found at i:24032312 original size:12 final size:12
Alignment explanation
Indices: 24032290--24032325 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
24032280 TGGGATATGC
*
24032290 AATGAATGAATG
1 AATGCATGAATG
*
24032302 GATGCATGAATG
1 AATGCATGAATG
24032314 AATGCATGAATG
1 AATGCATGAATG
24032326 TCAAATGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:24032312 original size:16 final size:17
Alignment explanation
Indices: 24032286--24032317 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
24032276 AGTATGGGAT
24032286 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
24032303 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
24032318 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:24038096 original size:23 final size:23
Alignment explanation
Indices: 24038053--24038099 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
24038043 TAAACACGTG
* *
24038053 ATTCTGTTTGGCCCTTTTGGCAT
1 ATTCTGTTTGGCCATTGTGGCAT
*
24038076 ATTCTGTTTGGCGATTGTGGCAT
1 ATTCTGTTTGGCCATTGTGGCAT
24038099 A
1 A
24038100 CTCTATTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.13, C:0.17, G:0.26, T:0.45
Consensus pattern (23 bp):
ATTCTGTTTGGCCATTGTGGCAT
Found at i:24040469 original size:453 final size:454
Alignment explanation
Indices: 24039623--24040533 Score: 1698
Period size: 453 Copynumber: 2.0 Consensus size: 454
24039613 TCCTTAGATG
24039623 GTAATTAGACCATTTTTTAAGTTAGTGGACAAAAATGGACATGAGGTAAGAGAAATTTTATGTTT
1 GTAATTAGACCATTTTTTAAGTTAGTGGACAAAAATGGACATGAGGTAAGAGAAATTTTATGTTT
24039688 TAAGTTAGGAGCAGTTTGGTCATTTGGTAAATAAATGAATTAAAAAGCAAAAATCAAGCCAAAAA
66 TAAGTTAGGAGCAGTTTGGTCATTTGGTAAATAAATGAATTAAAAAGCAAAAATCAAGCCAAAAA
* * *
24039753 CCTTGTCCATCTTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGACATAGCTAGGGTTTGTCCAAC
131 CCTTATCCATATTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGACATAGCTAGGGTTTGGCCAAC
*
24039818 TTTCAAGCTCGATTGTAAGTCTATTCTTGTCCCGTTTTTAATGCTCTTTACATTTTTTGAAGTCG
196 TTTCAAGCTCGATTGTAAGTCTATTCTTGTCCCGTTTGTAATGCTCTTTACATTTTTTGAAGTCG
* *
24039883 TTGACACTCGATCTATCTATTTCTACCACTATTTTGAGATATGATTAAGGTCTAAGGTTTGACCC
261 TTGACACTCGATCTATCTATTTCTACCACTAATTTGAGAGATGATTAAGGTCTAAGGTTTGACCC
24039948 ATGTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAACA
326 ATGTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAACA
24040013 AGTTTTGCTAAGTGATTTTTGATGAAACA-AAAAGGGACCTATTTGTAAAAAGTTATAAAATGA
391 AGTTTTGCTAAGTGATTTTTGATGAAACACAAAAGGGACCTATTTGTAAAAAGTTATAAAATGA
*
24040076 GTAATTAGACCATTTTTTAAGTTAGTGGACAAAAATGGACATGAGGTAATAGAAATTTTATGTTT
1 GTAATTAGACCATTTTTTAAGTTAGTGGACAAAAATGGACATGAGGTAAGAGAAATTTTATGTTT
*
24040141 TAAGTTAGGAGCATTTTGGTCATTTGGTAAATAAATGAATTAAAAAGCAAAAATCAAGCCAAAAA
66 TAAGTTAGGAGCAGTTTGGTCATTTGGTAAATAAATGAATTAAAAAGCAAAAATCAAGCCAAAAA
*
24040206 CCTTATCCATATTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGGCATAGCTAGGGTTTGGCCAAC
131 CCTTATCCATATTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGACATAGCTAGGGTTTGGCCAAC
*
24040271 TTTCAAGCTCGATTGTAAGTCTGTTCTTGTCCCGTTTGTAATGCTCTTTACATTTTTTGAAGTCG
196 TTTCAAGCTCGATTGTAAGTCTATTCTTGTCCCGTTTGTAATGCTCTTTACATTTTTTGAAGTCG
*
24040336 TTGACACTCGATCTATCTATTTCTACCACTAATTTGAGAGATGATTAAGGTCTAGGGTTTGACCC
261 TTGACACTCGATCTATCTATTTCTACCACTAATTTGAGAGATGATTAAGGTCTAAGGTTTGACCC
24040401 ATGTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAACA
326 ATGTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAACA
24040466 AGTTTTGCTAAGTGATTTTTGATGAAACACCTAAAAGGGACCTATTTGTAAAAAGTTATAAAATG
391 AGTTTTGCTAAGTGATTTTTGATGAAACA-C-AAAAGGGACCTATTTGTAAAAAGTTATAAAATG
24040531 A
454 A
24040532 GT
1 GT
24040534 GGTAAAAAAT
Statistics
Matches: 444, Mismatches: 11, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
453 408 0.92
456 36 0.08
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (454 bp):
GTAATTAGACCATTTTTTAAGTTAGTGGACAAAAATGGACATGAGGTAAGAGAAATTTTATGTTT
TAAGTTAGGAGCAGTTTGGTCATTTGGTAAATAAATGAATTAAAAAGCAAAAATCAAGCCAAAAA
CCTTATCCATATTCTCCCCCTTGTGCCAAAAATTAGAAGGAAGACATAGCTAGGGTTTGGCCAAC
TTTCAAGCTCGATTGTAAGTCTATTCTTGTCCCGTTTGTAATGCTCTTTACATTTTTTGAAGTCG
TTGACACTCGATCTATCTATTTCTACCACTAATTTGAGAGATGATTAAGGTCTAAGGTTTGACCC
ATGTTAGACATGTGTGTATTTTGATGTTTAATGGTAGATTATGCAAGTTTGATGTTAGATAAACA
AGTTTTGCTAAGTGATTTTTGATGAAACACAAAAGGGACCTATTTGTAAAAAGTTATAAAATGA
Found at i:24041293 original size:16 final size:15
Alignment explanation
Indices: 24041267--24041300 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
24041257 ATGAACGTAA
24041267 AACTCATATGTAATG
1 AACTCATATGTAATG
24041282 AACTCGATATGTAATG
1 AACTC-ATATGTAATG
24041298 AAC
1 AAC
24041301 CTTCGGTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (15 bp):
AACTCATATGTAATG
Found at i:24044857 original size:5 final size:5
Alignment explanation
Indices: 24044849--24044880 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
24044839 TAAGATAAGT
24044849 ATTTA ATTTA ATTTA ATTTA ATTTA ATATTA A
1 ATTTA ATTTA ATTTA ATTTA ATTTA AT-TTA A
24044881 ACCTATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
ATTTA
Found at i:24044879 original size:39 final size:41
Alignment explanation
Indices: 24044785--24044880 Score: 103
Period size: 39 Copynumber: 2.4 Consensus size: 41
24044775 ATAAACACTA
*
24044785 AATTAAATTTAATATTAAGATAATCACTTTAATATTAAATT
1 AATTTAATTTAATATTAAGATAATCACTTTAATATTAAATT
** * *
24044826 AA--TAAAATACTATTAAGATAAGT-A-TTTAAT-TTAATTT
1 AATTTAATTTAATATTAAGATAA-TCACTTTAATATTAAATT
24044863 AATTTAATTTAATATTAA
1 AATTTAATTTAATATTAA
24044881 ACCTATTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
37 8 0.18
38 6 0.14
39 27 0.61
40 1 0.02
41 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (41 bp):
AATTTAATTTAATATTAAGATAATCACTTTAATATTAAATT
Found at i:24054337 original size:38 final size:38
Alignment explanation
Indices: 24054272--24054374 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
24054262 GGCTTAAAGA
* *
24054272 CCCGCAGGCTTCGTGCTGGTGA-AATATCCAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGT-ATTATATCCAGGATAAAT
*
24054310 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCAGGATAAAT
* * * *
24054348 CTCACAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
24054375 TCGGGCCTTC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 1 0.02
38 56 0.98
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCAGGATAAAT
Found at i:24054449 original size:43 final size:43
Alignment explanation
Indices: 24054372--24054453 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
24054362 GCTGGTATTA
* **
24054372 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATACCGGTGATGTG
24054415 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATACCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATACCGGTGA
24054454 AATGATATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.28
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCGTAATACCGGTGATGTG
Found at i:24071381 original size:23 final size:24
Alignment explanation
Indices: 24071351--24071411 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
24071341 TGTCTTTAGA
24071351 TTTCTTTTTCTTTTTCTTTTTAT-
1 TTTCTTTTTCTTTTTCTTTTTATG
** *
24071374 TTTCTTTTAATTTTTGTTTTTATG
1 TTTCTTTTTCTTTTTCTTTTTATG
*
24071398 TTTATTTTCTCTTT
1 TTTCTTTT-TCTTT
24071412 CTATTTTGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 20 0.67
24 7 0.23
25 3 0.10
ACGTcount: A:0.08, C:0.10, G:0.03, T:0.79
Consensus pattern (24 bp):
TTTCTTTTTCTTTTTCTTTTTATG
Found at i:24071388 original size:12 final size:12
Alignment explanation
Indices: 24071351--24071396 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
24071341 TGTCTTTAGA
*
24071351 TTTCTTTTTCTT
1 TTTCTTTTTATT
24071363 TTTCTTTTTA-T
1 TTTCTTTTTATT
*
24071374 TTTCTTTTAATT
1 TTTCTTTTTATT
*
24071386 TTTGTTTTTAT
1 TTTCTTTTTAT
24071397 GTTTATTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 10 0.34
12 19 0.66
ACGTcount: A:0.09, C:0.09, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTCTTTTTATT
Found at i:24075086 original size:11 final size:12
Alignment explanation
Indices: 24075035--24075114 Score: 51
Period size: 11 Copynumber: 6.5 Consensus size: 12
24075025 TTTATATTTT
24075035 TTATTTATT-TTA
1 TTATTT-TTCTTA
*
24075047 TTATTTTACTTTA
1 TTATTTTTC-TTA
24075060 CTTCATTTTTCTTA
1 -TT-ATTTTTCTTA
24075074 TTATTTTTC-TA
1 TTATTTTTCTTA
24075085 TTATATTTTTCTT-
1 -T-TATTTTTCTTA
* *
24075098 TTATATTTATTA
1 TTATTTTTCTTA
24075110 -TATTT
1 TTATTT
24075115 AGTTTATTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 17
0.71 0.06 0.22
Matches are distributed among these distances:
11 15 0.27
12 15 0.27
13 13 0.24
14 6 0.11
15 6 0.11
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (12 bp):
TTATTTTTCTTA
Found at i:24075091 original size:13 final size:13
Alignment explanation
Indices: 24075075--24075105 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
24075065 TTTTTCTTAT
24075075 TATTTTTCTATTA
1 TATTTTTCTATTA
*
24075088 TATTTTTCTTTTA
1 TATTTTTCTATTA
24075101 TATTT
1 TATTT
24075106 ATTATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.74
Consensus pattern (13 bp):
TATTTTTCTATTA
Found at i:24075101 original size:27 final size:28
Alignment explanation
Indices: 24075042--24075105 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 28
24075032 TTTTTATTTA
24075042 TTTTATTATTTTACTTTACTTCATTTTTC
1 TTTTATTATTTTACTTTAC-TCATTTTTC
*
24075071 --TTATTATTTTTCTATTA-T-ATTTTTC
1 TTTTATTATTTTACT-TTACTCATTTTTC
24075096 TTTTA-TATTT
1 TTTTATTATTT
24075106 ATTATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
25 7 0.23
26 6 0.19
27 15 0.48
28 3 0.10
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (28 bp):
TTTTATTATTTTACTTTACTCATTTTTC
Found at i:24075382 original size:13 final size:13
Alignment explanation
Indices: 24075364--24075389 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24075354 CGCTCGATTG
24075364 GATTGGGTAACTA
1 GATTGGGTAACTA
24075377 GATTGGGTAACTA
1 GATTGGGTAACTA
24075390 TGTTCATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
GATTGGGTAACTA
Found at i:24079588 original size:34 final size:34
Alignment explanation
Indices: 24079545--24079617 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
24079535 AACTTCTCAA
24079545 TCTCAACTTTTTGTACAACAGGGTACCTATAAGG
1 TCTCAACTTTTTGTACAACAGGGTACCTATAAGG
24079579 TCTCAACTTTTTGTACAACAGGGTACCTATAAGG
1 TCTCAACTTTTTGTACAACAGGGTACCTATAAGG
24079613 TCTCA
1 TCTCA
24079618 TCCTTACTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (34 bp):
TCTCAACTTTTTGTACAACAGGGTACCTATAAGG
Found at i:24081420 original size:3 final size:3
Alignment explanation
Indices: 24081414--24081454 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
24081404 GAAGAAGTTA
24081414 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
24081455 AATTATAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:24095462 original size:63 final size:62
Alignment explanation
Indices: 24095383--24095592 Score: 190
Period size: 64 Copynumber: 3.3 Consensus size: 62
24095373 TTCATTTCTT
* * * *
24095383 TTTTTTTGTGAAGTTTTCATTTCTTTCTTTATCATTTAG-CCAAATAAAAGTAACTAAAAGCA
1 TTTTTTTGTGACGTTTT-ATTTCTTTCGTTATCTTTTAGTCAAAATAAAAGTAACTAAAAGCA
* *
24095445 TTTTTTTGGTGACGTTTTTTATTATTTCGTTATCTTTTAGTCAAAAAAATAAAAGTAACTAAAAG
1 TTTTTTT-GTGACGTTTTAT-TTCTTTCGTTATCTTTTAGTC---AAAATAAAAGTAACTAAAAG
*
24095510 TA
61 CA
** * * ***
24095512 TCCATTTTGTGACGTTTT-TATTCTTTCGTTACCTTTTAGTAAAAAATAAAAGTAACTAAAAATG
1 T-TTTTTTGTGACGTTTTAT-TTCTTTCGTTATCTTTTAGT-CAAAATAAAAGTAACTAAAAGCA
24095576 TCTTTTTTGTGACGTTT
1 T-TTTTTTGTGACGTTT
24095593 CTAAATCGAT
Statistics
Matches: 124, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
62 8 0.06
63 25 0.20
64 36 0.29
66 20 0.16
67 31 0.25
68 4 0.03
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (62 bp):
TTTTTTTGTGACGTTTTATTTCTTTCGTTATCTTTTAGTCAAAATAAAAGTAACTAAAAGCA
Found at i:24095507 original size:67 final size:64
Alignment explanation
Indices: 24095424--24095572 Score: 210
Period size: 67 Copynumber: 2.3 Consensus size: 64
24095414 TCATTTAGCC
** *
24095424 AAATAAAAGTAACTAAAAGCAT-TTTTTTGGTGACGTTTTTTATTATTTCGTTATCTTTTAGTCA
1 AAATAAAAGTAACTAAAAGCATCCATTTT-GTGACG-TTTTTATTATTTCGTTACCTTTTAGT--
24095488 AAA
62 AAA
* *
24095491 AAATAAAAGTAACTAAAAGTATCCATTTTGTGACGTTTTTATTCTTTCGTTACCTTTTAGTAAA
1 AAATAAAAGTAACTAAAAGCATCCATTTTGTGACGTTTTTATTATTTCGTTACCTTTTAGTAAA
24095555 AAATAAAAGTAACTAAAA
1 AAATAAAAGTAACTAAAA
24095573 ATGTCTTTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
64 21 0.28
66 24 0.32
67 27 0.36
68 4 0.05
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (64 bp):
AAATAAAAGTAACTAAAAGCATCCATTTTGTGACGTTTTTATTATTTCGTTACCTTTTAGTAAA
Found at i:24095587 original size:64 final size:64
Alignment explanation
Indices: 24095424--24095592 Score: 216
Period size: 64 Copynumber: 2.6 Consensus size: 64
24095414 TCATTTAGCC
* *
24095424 AAATAAAAGTAACTAAAAGCATT-TTTTTGGTGACGTTTTTTATTATTTCGTTATCTTTTAGTCA
1 AAATAAAAGTAACTAAAA--ATTCTTTTTTGTGACG-TTTTTATTATTTCGTTACCTTTTAGT-A
24095488 AAA
62 AAA
* ** *
24095491 AAATAAAAGTAACTAAAAGTATCCATTTTGTGACGTTTTTATTCTTTCGTTACCTTTTAGT-AAA
1 AAATAAAAGTAACTAAAAAT-TCTTTTTTGTGACGTTTTTATTATTTCGTTACCTTTTAGTAAAA
24095555 AAATAAAAGTAACTAAAAATGTCTTTTTTGTGACGTTT
1 AAATAAAAGTAACTAAAAAT-TCTTTTTTGTGACGTTT
24095593 CTAAATCGAT
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
64 37 0.41
65 1 0.01
66 25 0.28
67 27 0.30
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.43
Consensus pattern (64 bp):
AAATAAAAGTAACTAAAAATTCTTTTTTGTGACGTTTTTATTATTTCGTTACCTTTTAGTAAAA
Found at i:24100678 original size:42 final size:43
Alignment explanation
Indices: 24100578--24100723 Score: 131
Period size: 43 Copynumber: 3.4 Consensus size: 43
24100568 AACAAGTACA
* * *
24100578 ATGCCGACGTCCCAGAC-GTGGTCTTACATGTAACTCAATATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACACGTAAATCAATATCG
**
24100621 ATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATCAGATA-CG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCA-ATATCG
* * * *
24100663 ATGCCGATGTCCCAGACATGGTTTTATACGTAAATCTCA-ATCG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATC-AATATCG
*
24100706 AGGCCTG-TGTCCCAGACA
1 ATGCC-GATGTCCCAGACA
24100724 CTTCTTACAC
Statistics
Matches: 85, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
42 33 0.39
43 50 0.59
44 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCAATATCG
Found at i:24102282 original size:2 final size:2
Alignment explanation
Indices: 24102275--24102304 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
24102265 TTCTTTAATT
24102275 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24102305 AATCTTTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24103072 original size:18 final size:18
Alignment explanation
Indices: 24103051--24103087 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
24103041 TGAGTTTTTG
*
24103051 AATTTGAATAACTCAAAT
1 AATTCGAATAACTCAAAT
*
24103069 AATTCGAATAATTCAAAT
1 AATTCGAATAACTCAAAT
24103087 A
1 A
24103088 TCAAACTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
AATTCGAATAACTCAAAT
Found at i:24103771 original size:18 final size:18
Alignment explanation
Indices: 24103750--24103784 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
24103740 AAAAATCACA
24103750 TTTTTACATT-TAAAATAT
1 TTTTTA-ATTCTAAAATAT
24103768 TTTTTAATTCTAAAATA
1 TTTTTAATTCTAAAATA
24103785 CATAGTGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTTAATTCTAAAATAT
Found at i:24105888 original size:77 final size:75
Alignment explanation
Indices: 24105724--24105889 Score: 179
Period size: 77 Copynumber: 2.2 Consensus size: 75
24105714 TACTGTTTAT
* * * * * *
24105724 TTTTAAATTTTTATTTATTATCTATTTTAATTTTTTTATATAATGTTCATTTTAAATTTTTTTAT
1 TTTTAAAATTTTATGTATTATCTATTTTAATTTTTTCATATAATATTCATTTTAAATCTTTGTAT
*
24105789 ACATCATTTA
66 ACATCATCTA
* * * *
24105799 CTTTAAAATTTTATGTATTATTTATTTTAATTTTTTCCCATATATTATTTATTTTAAATCTTTGT
1 TTTTAAAATTTTATGTATTATCTATTTTAATTTTTT--CATATAATATTCATTTTAAATCTTTGT
* * *
24105864 GTATATTATCTA
64 ATACATCATCTA
*
24105876 TTTTAAAGTTTTAT
1 TTTTAAAATTTTAT
24105890 ATATATTACT
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
75 32 0.44
77 41 0.56
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (75 bp):
TTTTAAAATTTTATGTATTATCTATTTTAATTTTTTCATATAATATTCATTTTAAATCTTTGTAT
ACATCATCTA
Found at i:24105894 original size:26 final size:24
Alignment explanation
Indices: 24105672--24105955 Score: 130
Period size: 26 Copynumber: 11.2 Consensus size: 24
24105662 TTTTTGTTGG
*
24105672 TTTTAAACTCTTTTACATA-TAGTCTA
1 TTTTAAA-T-TTTTATATATTA-TCTA
* * * *
24105698 TATTAAATTTTATATATACTGTTTA
1 TTTTAAATTTT-TATATATTATCTA
*
24105723 TTTTTAAATTTTTATTTATTATCTA
1 -TTTTAAATTTTTATATATTATCTA
*
24105748 TTTTAATTTTTTTATATAATGT-TC-A
1 TTTTAA-ATTTTTATAT-AT-TATCTA
* * *
24105773 TTTTAAATTTTTTTATACATCATTTA
1 TTTTAAA--TTTTTATATATTATCTA
* * * *
24105799 CTTTAAAATTTTATGTATTATTTA
1 TTTTAAATTTTTATATATTATCTA
* *
24105823 TTTTAATTTTTTCCCATATATTATTTA
1 TTTTAAATTTTT---ATATATTATCTA
*
24105850 TTTTAAATCTTTGTGTATATTATCTA
1 TTTTAAAT-TTT-TATATATTATCTA
24105876 TTTTAAAGTTTTATATATATTA-CT-
1 TTTTAAA-TTTT-TATATATTATCTA
* *
24105900 TGGTTTAAATTATTTTATATGTTATTTA
1 T--TTTAAA-T-TTTTATATATTATCTA
* * *
24105928 CTTTAAATTTCTTTTACATTAT-TA
1 TTTTAAATTT-TTATATATTATCTA
24105952 TTTT
1 TTTT
24105956 TAAAATTGTT
Statistics
Matches: 199, Mismatches: 37, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
24 39 0.20
25 47 0.24
26 85 0.43
27 24 0.12
28 3 0.02
29 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTTAAATTTTTATATATTATCTA
Found at i:24106066 original size:26 final size:26
Alignment explanation
Indices: 24106037--24106121 Score: 100
Period size: 26 Copynumber: 3.3 Consensus size: 26
24106027 TTTATATGTA
* *
24106037 ATTTTAAATTGTTTTATAAATTAGTT
1 ATTTTAAATTGTTTTATATATTAATT
* * *
24106063 ATTTTAGATCGTTTTATATATTATTTT
1 ATTTTAAATTGTTTTATATATTA-ATT
*
24106090 ATTTTAAATTGTTTTGTATATTAATT
1 ATTTTAAATTGTTTTATATATTAATT
24106116 -TTTTAA
1 ATTTTAA
24106122 TTATTATTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
25 6 0.12
26 22 0.44
27 22 0.44
ACGTcount: A:0.31, C:0.01, G:0.07, T:0.61
Consensus pattern (26 bp):
ATTTTAAATTGTTTTATATATTAATT
Found at i:24106103 original size:27 final size:27
Alignment explanation
Indices: 24106037--24106117 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
24106027 TTTATATGTA
* *
24106037 ATTTTAAATTGTTTTATAAATTA-GTT
1 ATTTTAAATTGTTTTATATATTATTTT
* *
24106063 ATTTTAGATCGTTTTATATATTATTTT
1 ATTTTAAATTGTTTTATATATTATTTT
*
24106090 ATTTTAAATTGTTTTGTATATTAATTTT
1 ATTTTAAATTGTTTTATATATT-ATTTT
24106118 TTAATTATTA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
26 20 0.43
27 21 0.46
28 5 0.11
ACGTcount: A:0.30, C:0.01, G:0.07, T:0.62
Consensus pattern (27 bp):
ATTTTAAATTGTTTTATATATTATTTT
Found at i:24106217 original size:22 final size:25
Alignment explanation
Indices: 24106178--24106235 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 25
24106168 TTTTTTTATG
*
24106178 TATTATTT-GTTTAGAATT-GTCT-
1 TATTATTTATTTTAGAATTAGTCTA
* *
24106200 TATTATTTATTTTA-AATTATTTTA
1 TATTATTTATTTTAGAATTAGTCTA
24106224 TATTATTTATTT
1 TATTATTTATTT
24106236 CATTTCTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 12 0.40
23 6 0.20
24 12 0.40
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.66
Consensus pattern (25 bp):
TATTATTTATTTTAGAATTAGTCTA
Found at i:24108339 original size:12 final size:12
Alignment explanation
Indices: 24108322--24108346 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24108312 ATAATATATA
24108322 GATTTTAGGGGT
1 GATTTTAGGGGT
24108334 GATTTTAGGGGT
1 GATTTTAGGGGT
24108346 G
1 G
24108347 TCACATGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.44, T:0.40
Consensus pattern (12 bp):
GATTTTAGGGGT
Found at i:24110635 original size:4 final size:4
Alignment explanation
Indices: 24110626--24110654 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
24110616 AATGTATTTA
24110626 AGAT AGAT AGAT AGAT AGAT AGAT AGAT A
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT A
24110655 CGCTATGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AGAT
Found at i:24112441 original size:5 final size:5
Alignment explanation
Indices: 24112431--24112459 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
24112421 CTTTCCCTTT
24112431 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
24112460 GTGATGTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:24114274 original size:2 final size:2
Alignment explanation
Indices: 24114267--24114293 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24114257 CTAATAGTGC
24114267 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24114294 TAAAATATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24114567 original size:21 final size:19
Alignment explanation
Indices: 24114537--24114590 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 19
24114527 ATAACACTGC
24114537 ATAAACATATACATATATA
1 ATAAACATATACATATATA
*
24114556 TATTAAAGATATGTACATATATA
1 -A-TAAACATA--TACATATATA
24114579 ATAAACATATAC
1 ATAAACATATAC
24114591 TAATAACAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 3 0.10
20 1 0.03
21 14 0.48
22 1 0.03
23 10 0.34
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (19 bp):
ATAAACATATACATATATA
Found at i:24114852 original size:164 final size:164
Alignment explanation
Indices: 24114665--24115002 Score: 667
Period size: 164 Copynumber: 2.1 Consensus size: 164
24114655 ATTAAAATAA
24114665 AATAATAAATGACAATAGTGAAAATAATAGGTATAATAATAAATATAATCATATATGAAAATAAT
1 AATAATAAATGACAATAGTGAAAATAATAGGTATAATAATAAATATAATCATATATGAAAATAAT
24114730 ACTATGTAAAGTATATATACCCATATAATAAAATATATGTACTAATATTAATAATAAATATAATA
66 ACTATGTAAAGTATATATACCCATATAATAAAATATATGTACTAATATTAATAATAAATATAATA
24114795 AGGATAAAAATAGATATAATAATAATATATACAT
131 AGGATAAAAATAGATATAATAATAATATATACAT
24114829 AATAATAAATGACAATAGTGAAAATAATAGGTATAATAATAAATATAATCATATATGAAAATAAT
1 AATAATAAATGACAATAGTGAAAATAATAGGTATAATAATAAATATAATCATATATGAAAATAAT
24114894 ACTATGTAAAGTATATATACCCATATAATAAAATATATGTACTAATATTAATAATAAATATAATA
66 ACTATGTAAAGTATATATACCCATATAATAAAATATATGTACTAATATTAATAATAAATATAATA
24114959 AGGATAAAAATAGATATAATAATAATATATACAT
131 AGGATAAAAATAGATATAATAATAATATATACAT
24114993 AATATATAAA
1 AATA-ATAAA
24115003 ATATATATAA
Statistics
Matches: 173, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
164 168 0.97
165 5 0.03
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (164 bp):
AATAATAAATGACAATAGTGAAAATAATAGGTATAATAATAAATATAATCATATATGAAAATAAT
ACTATGTAAAGTATATATACCCATATAATAAAATATATGTACTAATATTAATAATAAATATAATA
AGGATAAAAATAGATATAATAATAATATATACAT
Found at i:24114994 original size:11 final size:10
Alignment explanation
Indices: 24114944--24115018 Score: 66
Period size: 9 Copynumber: 7.3 Consensus size: 10
24114934 ACTAATATTA
24114944 ATAATAA-AT
1 ATAATAATAT
*
24114953 ATAATAAGGAT
1 ATAATAA-TAT
*
24114964 AAAAATAGATAT
1 -ATAATA-ATAT
24114976 AATAATAATAT
1 -ATAATAATAT
24114987 ATACATAATAT
1 ATA-ATAATAT
24114998 ATAA-AATAT
1 ATAATAATAT
24115007 AT-ATAATAT
1 ATAATAATAT
24115016 ATA
1 ATA
24115019 CATATGTTAG
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
8 1 0.02
9 21 0.38
10 4 0.07
11 16 0.29
12 13 0.23
13 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (10 bp):
ATAATAATAT
Found at i:24115016 original size:18 final size:18
Alignment explanation
Indices: 24114860--24115018 Score: 80
Period size: 18 Copynumber: 8.6 Consensus size: 18
24114850 AAATAATAGG
24114860 TATAATA-AT-AAATATA
1 TATAATATATAAAATATA
* *
24114876 -ATCATATATGAAA-ATA
1 TATAATATATAAAATATA
* * *
24114892 -ATACTATGTAAAGTATA
1 TATAATATATAAAATATA
24114909 TATACCCATATAATAAAATATA
1 TATA---ATAT-ATAAAATATA
*
24114931 TGTACTAATAT-TAATAATAAA
1 --TA-TAATATATAA-AATATA
* *
24114952 TATAATAAGGATAAAAATAGA
1 TATAAT-A-TAT-AAAATATA
*
24114973 TATAATA-ATAATATATA
1 TATAATATATAAAATATA
*
24114990 CATAATATATAAAATATA
1 TATAATATATAAAATATA
24115008 TATAATATATA
1 TATAATATATA
24115019 CATATGTTAG
Statistics
Matches: 109, Mismatches: 17, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
15 5 0.05
16 13 0.12
17 18 0.17
18 28 0.26
19 3 0.03
20 4 0.04
21 20 0.18
22 14 0.13
24 2 0.02
25 2 0.02
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (18 bp):
TATAATATATAAAATATA
Found at i:24115093 original size:12 final size:12
Alignment explanation
Indices: 24115076--24115100 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24115066 CATAAATACG
24115076 TTTATATATATA
1 TTTATATATATA
24115088 TTTATATATATA
1 TTTATATATATA
24115100 T
1 T
24115101 AAATGATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTATATATATA
Found at i:24115215 original size:22 final size:22
Alignment explanation
Indices: 24115174--24115238 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
24115164 GATATATAAC
24115174 TAATAATAT-TA-AAATGTATACA
1 TAATAATATATATAAA--TATACA
24115196 TAATAATATATATAAATATA-A
1 TAATAATATATATAAATATACA
*
24115217 TATTAA-ATATAT--ATATACA
1 TAATAATATATATAAATATACA
24115236 TAA
1 TAA
24115239 CATATATGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 5 0.13
19 3 0.08
20 6 0.16
21 6 0.16
22 13 0.34
23 2 0.05
24 3 0.08
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (22 bp):
TAATAATATATATAAATATACA
Found at i:24115228 original size:24 final size:24
Alignment explanation
Indices: 24115201--24115277 Score: 84
Period size: 24 Copynumber: 3.1 Consensus size: 24
24115191 ATACATAATA
*
24115201 ATATATATAAATATAATATTAAAT
1 ATATATATACATATAATATTAAAT
*
24115225 ATATATATACATA-ACATATATGAAAG
1 ATATATATACATATA-ATAT-T-AAAT
*
24115251 ATATATATATCATATAGTATTAAAT
1 ATATATATA-CATATAATATTAAAT
24115276 AT
1 AT
24115278 TTACAATATA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
23 1 0.02
24 16 0.36
25 6 0.14
26 13 0.30
27 7 0.16
28 1 0.02
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (24 bp):
ATATATATACATATAATATTAAAT
Found at i:24115234 original size:40 final size:38
Alignment explanation
Indices: 24115165--24115245 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 38
24115155 AGTATAAAAG
* *
24115165 ATATATAACTAATAATATTAAAATGTATACATAATAAT
1 ATATATAAATAATAATATTAAAATATATACATAATAAT
* *
24115203 ATATATAAAT-ATAATATT-AAATATATATATACATAAC
1 ATATATAAATAATAATATTAAAATATATACATA-ATAAT
24115240 ATATAT
1 ATATAT
24115246 GAAAGATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 11 0.29
37 18 0.47
38 9 0.24
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (38 bp):
ATATATAAATAATAATATTAAAATATATACATAATAAT
Found at i:24115378 original size:15 final size:16
Alignment explanation
Indices: 24115313--24115404 Score: 52
Period size: 18 Copynumber: 5.8 Consensus size: 16
24115303 AAAAAACGAC
24115313 TAATAATAATATTAC-A
1 TAATAATAATA-TACAA
24115329 T-A-AAT-ATATAC-A
1 TAATAATAATATACAA
*
24115341 TAATAAAACATATACTAA
1 TAATAATA-ATATAC-AA
*
24115359 TAATAATAATAATATAAA
1 TAATAATAAT-ATA-CAA
**
24115377 TAATGGTAA-ATACAA
1 TAATAATAATATACAA
24115392 TAATAAATAATAT
1 TAAT-AATAATAT
24115405 TTAAAAATAA
Statistics
Matches: 58, Mismatches: 8, Indels: 19
0.68 0.09 0.22
Matches are distributed among these distances:
12 5 0.09
13 4 0.07
14 5 0.09
15 7 0.12
16 13 0.22
17 4 0.07
18 20 0.34
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (16 bp):
TAATAATAATATACAA
Found at i:24115886 original size:2 final size:2
Alignment explanation
Indices: 24115879--24115926 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
24115869 TGTAGCATTT
*
24115879 GA GA GA GA GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
24115921 GA GA GA
1 GA GA GA
24115927 ATTCTCTCTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:24131232 original size:40 final size:40
Alignment explanation
Indices: 24131151--24131368 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
24131141 AAACCAAGTA
* * * * *
24131151 CCTTCGGGATTTAG-CCAGATATAGCT-ACTCTCCCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
24131190 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
24131230 CCTTTGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
24131270 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
24131310 CCTTTGGGGCTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
24131350 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
24131369 TTATCATCCG
Statistics
Matches: 156, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 15 0.10
40 141 0.90
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:24136004 original size:26 final size:26
Alignment explanation
Indices: 24135968--24136075 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
24135958 TGAAATGCCC
* *
24135968 ATCATGGAACATTTACCTAAACTATT
1 ATCATGGAACATTTACCTAACCCATT
24135994 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
24136020 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
24136046 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
24136072 ATCA
1 ATCA
24136076 AATTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:24136935 original size:94 final size:95
Alignment explanation
Indices: 24136774--24137146 Score: 443
Period size: 94 Copynumber: 3.9 Consensus size: 95
24136764 CTAGGGAGTT
* *
24136774 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCTTGATAT-GTGTCAGTGTAAGAC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGGTGCCAGTGTAAGAC
*
24136838 CATGTCCGGGACATGGCATAGCACCGATAG
66 CATGTCCGGGACATGGCATAGCACTGATAG
*
24136868 ATGAGAGCTAGCT-TAAGACCATGTCTGGGACATGGCATCGGCTTGATAT-GTGTCAGTGTAAGA
1 ATGAGAGCTAG-TGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGGTGCCAGTGTAAGA
24136931 CCATGTCCGGGACATGGCATAGGCACTGATAG
65 CCATGTCCGGGACATGGCATA-GCACTGATAG
* * ** *
24136963 AAGAGAGCTAGTGTAAGACCATATCTGGGACATGGCATCGGCACCGATAGATGAGAGCCAGTGTA
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAT--ATG-GTGCCAGTGTA
* * * * *
24137028 TGACCATGTCTGGAACATGGCATTAGC-CTTAATAT
62 AGACCATGTCCGGGACATGGCA-TAGCAC-TGATAG
* * *
24137063 ATGAGAG-TCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTTA-ATGGGTGAGCCAGTGTA
1 ATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATAT-GGT--GCCAGTGTA
24137126 AGACCATGTCCGGGACATGGC
62 AGACCATGTCCGGGACATGGC
24137147 GTTGGCACCT
Statistics
Matches: 241, Mismatches: 24, Indels: 24
0.83 0.08 0.08
Matches are distributed among these distances:
94 82 0.34
95 48 0.20
96 6 0.02
97 1 0.00
98 29 0.12
99 3 0.01
100 70 0.29
101 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (95 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGGTGCCAGTGTAAGAC
CATGTCCGGGACATGGCATAGCACTGATAG
Found at i:24136983 original size:50 final size:49
Alignment explanation
Indices: 24136774--24137146 Score: 324
Period size: 50 Copynumber: 7.7 Consensus size: 49
24136764 CTAGGGAGTT
* *
24136774 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCTTGAT--
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATAG
* * * * *
24136821 ATGTG-TC-AGTGTAAGACCATGTCCGGGACATGGCAT-AGCACCGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTGATAG
*
24136868 ATGAGAGCTAGCT-TAAGACCATGTCTGGGACATGGCATCGGCTTGAT--
1 ATGAGAGCTAG-TGTAAGACCATGTCTGGGACATGGCATCGGCCTGATAG
* * * *
24136915 ATGTG-TC-AGTGTAAGACCATGTCCGGGACATGGCATAGGCACTGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTGATAG
* * *
24136963 AAGAGAGCTAGTGTAAGACCATATCTGGGACATGGCATCGGCACCGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTGATAG
* * * ** * *
24137013 ATGAGAGCCAGTGTATGACCATGTCTGGAACATGGCATTAGCCTTAATAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TGATAG
* * *
24137063 ATGAGAG-TCAGTGTAAGACCATGTTTGGGACATGGCATC-GACT-TTA-
1 ATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATAG
* * *
24137109 ATGGGTGAGCCAGTGTAAGACCATGTCCGGGACATGGC
1 AT--GAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
24137147 GTTGGCACCT
Statistics
Matches: 262, Mismatches: 46, Indels: 35
0.76 0.13 0.10
Matches are distributed among these distances:
44 3 0.01
45 59 0.23
46 8 0.03
47 14 0.05
48 34 0.13
49 33 0.13
50 111 0.42
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATAG
Found at i:24140285 original size:21 final size:20
Alignment explanation
Indices: 24140259--24140303 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
24140249 GATTTTTTAA
*
24140259 AACACTTTGAAAATTACTTTG
1 AACACTTAGAAAA-TACTTTG
* *
24140280 AACACTTAGGAAATATTTTG
1 AACACTTAGAAAATACTTTG
24140300 AACA
1 AACA
24140304 AGTTCAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.33
Consensus pattern (20 bp):
AACACTTAGAAAATACTTTG
Found at i:24140616 original size:106 final size:105
Alignment explanation
Indices: 24140403--24140603 Score: 228
Period size: 106 Copynumber: 1.9 Consensus size: 105
24140393 AATATTGAGC
* * *
24140403 AAAAATAAAAATTATTGATACTTATCATTAAGTATTGATACTTAGAAATTTTTATAGATACACAT
1 AAAAATAAAAATTATCGATACTTATCATTAAGTATTGATACATACAAATTTTTATAGATACACAT
** * * ***
24140468 GCTTGGAATTTATACGAAATTGCCATTTTGAAATTTTTGA
66 GCTTGGAATCAATACGAAATTGACATTCTGAAATTAGGGA
*
24140508 AAAAAGTAAAAATTATCGATACTTATCATTAAGTATTGATAACAT-CATATTTTTATTA-ATAC-
1 AAAAA-TAAAAATTATCGATACTTATCATTAAGTATTGAT-ACATACAAATTTTTA-TAGATACA
* **
24140570 CTTTTTTGGAATCAATACGAAATTGACATTCTGA
63 CATGCTTGGAATCAATACGAAATTGACATTCTGA
24140604 CTTCGAGGGA
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
105 32 0.39
106 45 0.55
107 5 0.06
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.39
Consensus pattern (105 bp):
AAAAATAAAAATTATCGATACTTATCATTAAGTATTGATACATACAAATTTTTATAGATACACAT
GCTTGGAATCAATACGAAATTGACATTCTGAAATTAGGGA
Found at i:24143435 original size:73 final size:74
Alignment explanation
Indices: 24143345--24143489 Score: 224
Period size: 74 Copynumber: 2.0 Consensus size: 74
24143335 GTATAAGGAC
*
24143345 TAAATTTGAAAAGTGGTAAAAGTTAA-TTTTAATTAATTGAAGGACCAATTGACCAATTAGA-CC
1 TAAATTTGAAAAATGGTAAAAGTTAATTTTTAATTAATTGAAGGACCAATTGACCAATT-GACCC
*
24143408 TTTTTTATTT
65 TTCTTTATTT
*
24143418 TAAA-TTGTAAAAATGGTAAAAGTTAATTTTTAATTAATTGAAGGACCAATTGAGCAATTGACCC
1 TAAATTTG-AAAAATGGTAAAAGTTAATTTTTAATTAATTGAAGGACCAATTGACCAATTGACCC
24143482 TTCTTTAT
65 TTCTTTAT
24143490 CACGTCAAAC
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
72 3 0.05
73 23 0.35
74 40 0.61
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (74 bp):
TAAATTTGAAAAATGGTAAAAGTTAATTTTTAATTAATTGAAGGACCAATTGACCAATTGACCCT
TCTTTATTT
Found at i:24143588 original size:14 final size:14
Alignment explanation
Indices: 24143569--24143595 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24143559 TTAAGATTTA
24143569 TTTAATTAATTATG
1 TTTAATTAATTATG
24143583 TTTAATTAATTAT
1 TTTAATTAATTAT
24143596 TAACTAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
TTTAATTAATTATG
Found at i:24144799 original size:6 final size:6
Alignment explanation
Indices: 24144788--24144814 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
24144778 TAGGTTTCCA
24144788 AAATGG AAATGG AAATGG AAATGG AAA
1 AAATGG AAATGG AAATGG AAATGG AAA
24144815 CGATTCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.30, T:0.15
Consensus pattern (6 bp):
AAATGG
Found at i:24146520 original size:26 final size:26
Alignment explanation
Indices: 24146478--24146538 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
24146468 AATTTTACCA
* *
24146478 GGGTAAAATTGTCAAAATTTTATT-G
1 GGGTAAAATCGTAAAAATTTTATTAG
24146503 GGAGTAAAATCGTAAAAATTTTATTAG
1 GG-GTAAAATCGTAAAAATTTTATTAG
24146530 GGGTAAAAT
1 GGGTAAAAT
24146539 AGGGATGAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 2 0.06
26 27 0.84
27 3 0.09
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.34
Consensus pattern (26 bp):
GGGTAAAATCGTAAAAATTTTATTAG
Found at i:24148476 original size:54 final size:54
Alignment explanation
Indices: 24148406--24148512 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
24148396 TTCCATAATT
* *
24148406 ACCGTCCTAGTCGACTACCCCAT-TTTTATTGTCCCGATGGACTATCCCATGTTC
1 ACCGTCCTAGTCGACTA-CCCATCGTTTATTGTCCCGATGGACTATCACATGTTC
* * * *
24148460 ACCGTCCTGGTGGACTACCCATCGTTTATTGTCTCGGTGGACTATCACATGTT
1 ACCGTCCTAGTCGACTACCCATCGTTTATTGTCCCGATGGACTATCACATGTT
24148513 TAATGTCCTA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 5 0.11
54 41 0.89
ACGTcount: A:0.18, C:0.30, G:0.19, T:0.34
Consensus pattern (54 bp):
ACCGTCCTAGTCGACTACCCATCGTTTATTGTCCCGATGGACTATCACATGTTC
Found at i:24148513 original size:27 final size:26
Alignment explanation
Indices: 24148418--24148520 Score: 91
Period size: 27 Copynumber: 3.8 Consensus size: 26
24148408 CGTCCTAGTC
* * *
24148418 GACTACCCCATTTTTATTGTCCCGATG
1 GACTATCCCATGTTTATTGT-CCGGTG
* **
24148445 GACTATCCCATGTTCACCGTCCTGGTG
1 GACTATCCCATGTTTATTGTCC-GGTG
24148472 GACTA-CCCATCGTTTATTGTCTCGGTG
1 GACTATCCCAT-GTTTATTGTC-CGGTG
* *
24148499 GACTATCACATGTTTAATGTCC
1 GACTATCCCATGTTTATTGTCC
24148521 TAGCAGGCTC
Statistics
Matches: 61, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
26 8 0.13
27 48 0.79
28 5 0.08
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.35
Consensus pattern (26 bp):
GACTATCCCATGTTTATTGTCCGGTG
Found at i:24161504 original size:21 final size:20
Alignment explanation
Indices: 24161458--24161507 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
24161448 TTTTTTTTAG
*
24161458 AAATCATAAAAGAATCATAA
1 AAATTATAAAAGAATCATAA
* *
24161478 ATAATTATAAAAGAGTTATAGA
1 A-AATTATAAAAGAATCATA-A
24161500 AAATTATA
1 AAATTATA
24161508 TAAAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.88
22 2 0.08
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.28
Consensus pattern (20 bp):
AAATTATAAAAGAATCATAA
Found at i:24161506 original size:10 final size:9
Alignment explanation
Indices: 24161474--24161548 Score: 55
Period size: 10 Copynumber: 7.7 Consensus size: 9
24161464 TAAAAGAATC
24161474 ATAAATAATT
1 ATAAA-AATT
24161484 ATAAAAGAGTT
1 ATAAAA-A-TT
24161495 ATAGAAAATT
1 ATA-AAAATT
24161505 ATATAAAATT
1 ATA-AAAATT
*
24161515 A-ATAAAATG
1 ATA-AAAATT
24161524 ATAAAAA-T
1 ATAAAAATT
24161532 ATTAAAAATTT
1 A-TAAAAA-TT
24161543 ATAAAA
1 ATAAAA
24161549 CTAGTAATTT
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
8 1 0.02
9 19 0.35
10 24 0.44
11 8 0.15
12 3 0.05
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:24161521 original size:9 final size:10
Alignment explanation
Indices: 24161480--24161548 Score: 51
Period size: 9 Copynumber: 7.2 Consensus size: 10
24161470 AATCATAAAT
24161480 AATTATA-AA
1 AATTATATAA
*
24161489 AGAGTTATAGAA
1 A-A-TTATATAA
24161501 AATTATATAA
1 AATTATATAA
24161511 AATTA-ATAA
1 AATTATATAA
*
24161520 AATGATA-AA
1 AATTATATAA
24161529 AA-TAT-TAAA
1 AATTATAT-AA
24161538 AATT-TATAA
1 AATTATATAA
24161547 AA
1 AA
24161549 CTAGTAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
8 2 0.04
9 22 0.45
10 16 0.33
11 6 0.12
12 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (10 bp):
AATTATATAA
Found at i:24161572 original size:10 final size:10
Alignment explanation
Indices: 24161557--24161614 Score: 52
Period size: 10 Copynumber: 6.2 Consensus size: 10
24161547 AACTAGTAAT
24161557 TTTTTAAAAA
1 TTTTTAAAAA
24161567 TTTTT--AAA
1 TTTTTAAAAA
24161575 TTTTT--AAA
1 TTTTTAAAAA
*
24161583 TTTTTAATAA
1 TTTTTAAAAA
* *
24161593 TTTCTAATAA
1 TTTTTAAAAA
*
24161603 TTTTAAAAAA
1 TTTTTAAAAA
24161613 TT
1 TT
24161615 AATAAACAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
8 16 0.39
10 25 0.61
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:24161586 original size:7 final size:8
Alignment explanation
Indices: 24161564--24161589 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
24161554 AATTTTTTAA
24161564 AAATTTTT
1 AAATTTTT
24161572 AAATTTTT
1 AAATTTTT
24161580 AAATTTTT
1 AAATTTTT
24161588 AA
1 AA
24161590 TAATTTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
AAATTTTT
Found at i:24161928 original size:17 final size:17
Alignment explanation
Indices: 24161898--24161935 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
24161888 TTTTATAAAT
*
24161898 TTTTTATAATTTTCACTA
1 TTTTTATAAGTTTCA-TA
24161916 TTTTTAT-AGTTTCATA
1 TTTTTATAAGTTTCATA
24161932 TTTT
1 TTTT
24161936 AATCTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 6 0.32
18 7 0.37
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.66
Consensus pattern (17 bp):
TTTTTATAAGTTTCATA
Found at i:24161992 original size:20 final size:22
Alignment explanation
Indices: 24161967--24162006 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
24161957 TTTTTTTATA
24161967 ATATTTTT-CATAAT-TATTTC
1 ATATTTTTCCATAATATATTTC
24161987 ATATTTTTCCATAATATATT
1 ATATTTTTCCATAATATATT
24162007 AACAGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 6 0.33
22 4 0.22
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (22 bp):
ATATTTTTCCATAATATATTTC
Found at i:24163888 original size:70 final size:71
Alignment explanation
Indices: 24163738--24163900 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
24163728 GAGATGTATC
24163738 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
24163803 AGGACA
66 AGGACA
24163809 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
24163873 AGGACA
66 AGGACA
24163879 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
24163901 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:24169927 original size:40 final size:40
Alignment explanation
Indices: 24169819--24170028 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24169809 CGGGATTTAA
* * * * *
24169819 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24169859 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24169899 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24169939 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24169979 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24170019 CCGGATATAT
1 CCGGATATAT
24170029 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24178060 original size:40 final size:40
Alignment explanation
Indices: 24177952--24178161 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24177942 CGGGATTTAA
* * * * *
24177952 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24177992 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24178032 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24178072 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24178112 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24178152 CCGGATATAT
1 CCGGATATAT
24178162 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24182830 original size:71 final size:71
Alignment explanation
Indices: 24182742--24182905 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
24182732 GAGATGTATC
24182742 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
24182807 AGGACA
66 AGGACA
*
24182813 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
24182878 CGGACA
66 AGGACA
24182884 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
24182906 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:24186615 original size:10 final size:10
Alignment explanation
Indices: 24186600--24186646 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
24186590 TAACATTTTG
24186600 AATTTTAATT
1 AATTTTAATT
*
24186610 AATTTTATATCA
1 AATTTTA-AT-T
24186622 AATTTTAATT
1 AATTTTAATT
*
24186632 AATTTTGATT
1 AATTTTAATT
24186642 -ATTTT
1 AATTTT
24186647 TGACAGATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 5 0.16
10 16 0.50
11 4 0.12
12 7 0.22
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:24188226 original size:42 final size:42
Alignment explanation
Indices: 24188180--24188263 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
24188170 TACTTAGCTA
* *
24188180 AAAATCTTAGTTTTTAATCTCCTTGTCAAATCAAAATATTTT
1 AAAATCTTAGTTTTTAACCACCTTGTCAAATCAAAATATTTT
*
24188222 AAAATCTTAGTTTTTAACCACCTTGTCAAATCAATATATTTT
1 AAAATCTTAGTTTTTAACCACCTTGTCAAATCAAAATATTTT
24188264 TCTTCATCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (42 bp):
AAAATCTTAGTTTTTAACCACCTTGTCAAATCAAAATATTTT
Found at i:24195662 original size:39 final size:40
Alignment explanation
Indices: 24195554--24195738 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
24195544 TCGAATGATG
* *
24195554 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
24195593 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
24195634 TCCGGGCTAAG-CCCGAAGGAATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* **
24195673 TCCGGGTTAAGTCCTAAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
24195712 AACCGGGCTATGTCTCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
24195739 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:24195760 original size:79 final size:79
Alignment explanation
Indices: 24195610--24195761 Score: 184
Period size: 79 Copynumber: 1.9 Consensus size: 79
24195600 CTAAGATCCG
* **
24195610 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGAATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAAATC
24195675 CGGGTTAAGTCCTA
66 CGGGTTAAGTCCTA
* * * * *
24195689 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCTCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGAATTGGAACGAGTTA-CTAA
24195752 ATCC-GGTTAA
63 ATCCGGGTTAA
24195762 ATTCCGAAGG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.61
80 22 0.35
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAAATC
CGGGTTAAGTCCTA
Done.