Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 85 of 425
Found at i:24477890 original size:15 final size:15
Alignment explanation
Indices: 24477870--24477908 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
24477860 TTTAAACCCC
24477870 AAACCAT-AAACCTCT
1 AAACCATGAAACCT-T
24477885 AAACCATGAAACCTT
1 AAACCATGAAACCTT
24477900 AAACCATGA
1 AAACCATGA
24477909 TTAACCACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.49, C:0.28, G:0.05, T:0.18
Consensus pattern (15 bp):
AAACCATGAAACCTT
Found at i:24478096 original size:22 final size:22
Alignment explanation
Indices: 24478071--24478118 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
24478061 CCTTTAACAA
* *
24478071 TTAAACCCATAACCCTTAATCC
1 TTAAACCCATAACCCATAACCC
*
24478093 TTAAACCCATAATCCATAACCC
1 TTAAACCCATAACCCATAACCC
24478115 TTAA
1 TTAA
24478119 CCTTTACCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (22 bp):
TTAAACCCATAACCCATAACCC
Found at i:24478099 original size:15 final size:14
Alignment explanation
Indices: 24478080--24478127 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
24478070 ATTAAACCCA
24478080 TAACCCTTAATCCT
1 TAACCCTTAATCCT
* *
24478094 TAAACCCATAATCCA
1 T-AACCCTTAATCCT
24478109 TAACCCTTAA-CCT
1 TAACCCTTAATCCT
*
24478122 TTACCC
1 TAACCC
24478128 ACTAATCCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
13 7 0.25
14 9 0.32
15 12 0.43
ACGTcount: A:0.33, C:0.38, G:0.00, T:0.29
Consensus pattern (14 bp):
TAACCCTTAATCCT
Found at i:24478109 original size:29 final size:28
Alignment explanation
Indices: 24478077--24478135 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
24478067 ACAATTAAAC
24478077 CCATAACCCTTAATCCTTAAACCCA-TAAT
1 CCATAACCCTTAA-CCTT-AACCCACTAAT
*
24478106 CCATAACCCTTAACCTTTACCCACTAAT
1 CCATAACCCTTAACCTTAACCCACTAAT
24478134 CC
1 CC
24478136 CTAAACTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 5 0.18
28 10 0.36
29 13 0.46
ACGTcount: A:0.34, C:0.39, G:0.00, T:0.27
Consensus pattern (28 bp):
CCATAACCCTTAACCTTAACCCACTAAT
Found at i:24478822 original size:40 final size:39
Alignment explanation
Indices: 24478778--24478881 Score: 104
Period size: 40 Copynumber: 2.6 Consensus size: 39
24478768 TTGCGGCATT
* *
24478778 TTTTATAAAAGCGCCGCTAATGCTCGT-TCTATAGTGGGG
1 TTTTATAAAA-CGCCGCTAATGCTCCTATCTATAGTGGCG
* *
24478817 CTTTTAAAAAAATGCCGCTAATG-TCCTATCTATAGTGGCG
1 -TTTT-ATAAAACGCCGCTAATGCTCCTATCTATAGTGGCG
*
24478857 TTTATTTAGAAACGCCGCTAATGCT
1 TTT-TATA-AAACGCCGCTAATGCT
24478882 GAATGTAGCG
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
39 7 0.13
40 39 0.75
41 6 0.12
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (39 bp):
TTTTATAAAACGCCGCTAATGCTCCTATCTATAGTGGCG
Found at i:24482998 original size:40 final size:40
Alignment explanation
Indices: 24482934--24483066 Score: 142
Period size: 40 Copynumber: 3.3 Consensus size: 40
24482924 GCGACTCGCT
* * * * *
24482934 CAAAAGCCTTCGGGACATAGCCCGG-TTATAATAGCTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAAGAACTCACA
* ** *
24482974 CAAATGCCTTCGGAACTTAACCCGGATTTGGGAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAAGAACTCACA
** *
24483014 CAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAAGAACTCACA
24483054 CAAATGCCTTCGG
1 CAAATGCCTTCGG
24483067 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 80 0.98
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAAGAACTCACA
Found at i:24483079 original size:40 final size:40
Alignment explanation
Indices: 24482972--24483119 Score: 192
Period size: 40 Copynumber: 3.7 Consensus size: 40
24482962 TAATAGCTCA
*
24482972 CACAAATGCCTTCGGAACTTAACCCGGATTTGGGAACTCG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCG
24483012 CACAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCG
** * ** *
24483052 CACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAG
1 CACAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAAC-TCG
*
24483093 CACAAA-GCCTTCGGGACTTAGCCCGGA
1 CACAAATGCCTTCGGGACTTAACCCGGA
24483120 CATCATTCGA
Statistics
Matches: 97, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.03
40 83 0.86
41 11 0.11
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CACAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCG
Found at i:24493753 original size:257 final size:257
Alignment explanation
Indices: 24493297--24493811 Score: 1012
Period size: 257 Copynumber: 2.0 Consensus size: 257
24493287 GCATTGCTTT
*
24493297 CTACATCATCGGATTCAGCTCGATTGCGATCCATTACTATATGAAAACAGAATTTTAAAAGGTCA
1 CTACATCATCGGATTCAGCTCAATTGCGATCCATTACTATATGAAAACAGAATTTTAAAAGGTCA
24493362 GAAGATGTCACACTACCATAATTCATTTATGGCATGTATAGCTAGACTCGTACACATGCTATGTT
66 GAAGATGTCACACTACCATAATTCATTTATGGCATGTATAGCTAGACTCGTACACATGCTATGTT
*
24493427 AGTTTGAGAATCGACTAAACCATAGCTCTGATACCACTAAATGTAACAACTTTTACTCGTATTCA
131 AGTTTGAGAATCGACTAAACCATAGCTCTGATACCACTAAATGTAACAACTTTTACTCATATTCA
24493492 ACGCCATAATAGGGTACGAGGCATTACTAAAATTAAACTCAAACAAACATTCAAAATCAAGA
196 ACGCCATAATAGGGTACGAGGCATTACTAAAATTAAACTCAAACAAACATTCAAAATCAAGA
24493554 CTACATCATCGGATTCAGCTCAATTGCGATCCATTACTATATGAAAACAGAATTTTAAAAGGTCA
1 CTACATCATCGGATTCAGCTCAATTGCGATCCATTACTATATGAAAACAGAATTTTAAAAGGTCA
24493619 GAAGATGTCACACTACCATAATTCATTTATGGCATGTATAGCTAGACTCGTACACATGCTATGTT
66 GAAGATGTCACACTACCATAATTCATTTATGGCATGTATAGCTAGACTCGTACACATGCTATGTT
24493684 AGTTTGAGAATCGACTAAACCATAGCTCTGATACCACTAAATGTAACAACTTTTACTCATATTCA
131 AGTTTGAGAATCGACTAAACCATAGCTCTGATACCACTAAATGTAACAACTTTTACTCATATTCA
24493749 ACGCCATAATAGGGTACGAGGCATTACTAAAATTAAACTCAAACAAACATTCAAAATCAAGA
196 ACGCCATAATAGGGTACGAGGCATTACTAAAATTAAACTCAAACAAACATTCAAAATCAAGA
24493811 C
1 C
24493812 ATGAATTTCC
Statistics
Matches: 256, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
257 256 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (257 bp):
CTACATCATCGGATTCAGCTCAATTGCGATCCATTACTATATGAAAACAGAATTTTAAAAGGTCA
GAAGATGTCACACTACCATAATTCATTTATGGCATGTATAGCTAGACTCGTACACATGCTATGTT
AGTTTGAGAATCGACTAAACCATAGCTCTGATACCACTAAATGTAACAACTTTTACTCATATTCA
ACGCCATAATAGGGTACGAGGCATTACTAAAATTAAACTCAAACAAACATTCAAAATCAAGA
Found at i:24497854 original size:39 final size:39
Alignment explanation
Indices: 24497811--24497973 Score: 227
Period size: 39 Copynumber: 4.2 Consensus size: 39
24497801 TGTGTATGAA
* * * *
24497811 TGTGCGAATTTTGATATCCGGGCTAAGCACGACGGTAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
24497850 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
24497889 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
24497928 TGTGCGAGTTGTGATACCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
24497968 TGTGCG
1 TGTGCG
24497974 GGTTCCTACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 96 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:24505963 original size:39 final size:39
Alignment explanation
Indices: 24505804--24505965 Score: 218
Period size: 39 Copynumber: 4.2 Consensus size: 39
24505794 TGTGTATGAA
* * * * * *
24505804 TGTGCGAATTTTGATATCCGGGCTAAGCACGACGGTAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
24505843 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
24505882 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
24505921 TGTGCGAGTTGTGATA-CCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
24505960 TGTGCG
1 TGTGCG
24505966 GGTTACCACA
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 9 0.08
39 103 0.92
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:24505981 original size:78 final size:78
Alignment explanation
Indices: 24505821--24505996 Score: 210
Period size: 78 Copynumber: 2.2 Consensus size: 78
24505811 ATTTTGATAT
* * *
24505821 CCGGGCTAAGCACGACGGTAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
** * *
24505886 CGAGTTATGATAT
66 CGAGTTACCACAA
* * * *
24505899 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATA-CCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
*
24505963 GCGGGTTACCACAA
65 GCGAGTTACCACAA
*
24505977 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAG-CCCGAAGGC
24505997 GTTTGAACAA
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
77 9 0.11
78 65 0.78
79 9 0.11
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGTTACCACAA
Found at i:24505991 original size:40 final size:38
Alignment explanation
Indices: 24505821--24505996 Score: 163
Period size: 39 Copynumber: 4.5 Consensus size: 38
24505811 ATTTTGATAT
* * * * * * *
24505821 CCGGGCTAAGCACGACGGTAAATGTGCGAATTGTGATAT
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGA-AA
*
24505860 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATAT
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGA-AA
* *
24505899 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATA
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGAAA
* * * **
24505937 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCACAA
1 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATGA-AA
*
24505977 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAG-CCCGAAGGC
24505997 GTTTGAACAA
Statistics
Matches: 117, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
38 9 0.08
39 89 0.76
40 19 0.16
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (38 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGAAA
Found at i:24508957 original size:19 final size:18
Alignment explanation
Indices: 24508933--24508969 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
24508923 TGAATAAGCC
24508933 AAATGGGCCGAAATGGGCT
1 AAATGGGCC-AAATGGGCT
*
24508952 AAATGGGCCCAATGGGCT
1 AAATGGGCCAAATGGGCT
24508970 GTTGGGACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.30, C:0.19, G:0.35, T:0.16
Consensus pattern (18 bp):
AAATGGGCCAAATGGGCT
Found at i:24509127 original size:29 final size:27
Alignment explanation
Indices: 24509051--24509160 Score: 89
Period size: 29 Copynumber: 3.9 Consensus size: 27
24509041 TAATGTGATT
*
24509051 TGGGCCATAT-AAATGAGATTGGGCCTAA
1 TGGGCCATATGAAATGA-ATTGGG-CTGA
**
24509079 TGGGCCATATGATTTCGAATTGGGCATGA
1 TGGGCCATATGAAAT-GAATTGGGC-TGA
* * *
24509108 TGGGCCATATGAAGGTGAATTAGGCCGAA
1 TGGGCCATATGAA-ATGAATTGGGCTG-A
24509137 TGGGCCATAT-AAATGAGATTGGGC
1 TGGGCCATATGAAATGA-ATTGGGC
24509161 CTAGTGGACC
Statistics
Matches: 67, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
27 3 0.04
28 20 0.30
29 41 0.61
30 3 0.04
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (27 bp):
TGGGCCATATGAAATGAATTGGGCTGA
Found at i:24509462 original size:26 final size:26
Alignment explanation
Indices: 24509433--24509486 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
24509423 AAAACCGTAA
* * *
24509433 TAAGGGAAAAATTACCGAAATGCCCC
1 TAAGGGAAAAATGACCAAAATACCCC
24509459 TAAGGGAAAAATGACCAAAATACCCC
1 TAAGGGAAAAATGACCAAAATACCCC
24509485 TA
1 TA
24509487 TGTGTTGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.17, T:0.15
Consensus pattern (26 bp):
TAAGGGAAAAATGACCAAAATACCCC
Found at i:24513648 original size:28 final size:28
Alignment explanation
Indices: 24513608--24513671 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
24513598 TGTACTAGAG
*
24513608 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
24513636 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
24513664 TACCCCTA
1 TACCCCTA
24513672 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:24513835 original size:27 final size:28
Alignment explanation
Indices: 24513777--24513866 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
24513767 AGGAAGCGTC
*
24513777 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
24513805 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
24513832 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
24513861 CTGGTG
1 CTGGTG
24513867 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:24513877 original size:29 final size:28
Alignment explanation
Indices: 24513787--24513877 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
24513777 CTGGTGGCTA
* * *
24513787 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
24513815 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
24513842 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
24513871 TGTCACA
1 TGCCACA
24513878 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:24513885 original size:55 final size:56
Alignment explanation
Indices: 24513777--24513891 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
24513767 AGGAAGCGTC
* * *
24513777 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
24513832 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
24513888 CTGG
1 CTGG
24513892 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:24514354 original size:19 final size:19
Alignment explanation
Indices: 24514330--24514368 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
24514320 TTTTAATAAT
* *
24514330 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
24514349 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
24514368 T
1 T
24514369 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:24518582 original size:43 final size:43
Alignment explanation
Indices: 24518529--24519042 Score: 322
Period size: 43 Copynumber: 11.9 Consensus size: 43
24518519 GTAGGTTATA
* * *
24518529 CTTCGGTATATTCGATGATGCACTGTATGTGCCAGTGTATTTG
1 CTTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
24518572 CTTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
1 CTTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
* * ** * *
24518615 CTAGCAGTTTATTTGATGATGCACTG--TGTGCCAATATATTTA
1 CT-TCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
* * *
24518657 CATT-AATATATCCGATGATACACTGTATGTGTCAGTATATTTG
1 C-TTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
* ** * * * * *
24518700 TTTTGGTATATCCGATGATGCACTATATGTACCAATATAGTAG
1 CTTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
* * * *
24518743 CTTCGGT-TCCATCTGATGATGCACTG--TGTGCACAAATATATTTT
1 CTTCAGTAT--ATCCGATGATGCACTGTATGTGC-C-AGTATATTTG
* * * * * * * * **
24518787 CTTCGGTTTATCTGATGATGCACCGTGTGCGCTAGTATAGTAA
1 CTTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
** * * * * *
24518830 CTTTGGTTTCATCTGATGATGCATTGTGTGTGCCAGTATATTTA
1 CTTCAGTAT-ATCCGATGATGCACTGTATGTGCCAGTATATTTG
** * * * * **
24518874 CTTTGGTATATCCAACGTTGCACTGCATGTGCCAAAATATTTG
1 CTTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
* * **
24518917 CTTC-GATATATCCGATGTTACACTGTATGTGCCAAAATATTTG
1 CTTCAG-TATATCCGATGATGCACTGTATGTGCCAGTATATTTG
* * * * *
24518960 CTTCGGTATATCCGATGATGCATTGTGTGTGCCAGTATAGTAG
1 CTTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
* * ** * *
24519003 CTTCATTTTCATCTAATGATGCATTGTCTGTGCCAGTATA
1 CTTCAGTAT-ATCCGATGATGCACTGTATGTGCCAGTATA
24519043 ACAGCTTTGG
Statistics
Matches: 375, Mismatches: 80, Indels: 31
0.77 0.16 0.06
Matches are distributed among these distances:
41 16 0.04
42 23 0.06
43 220 0.59
44 111 0.30
45 5 0.01
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (43 bp):
CTTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
Found at i:24518667 original size:85 final size:86
Alignment explanation
Indices: 24518537--24518699 Score: 231
Period size: 85 Copynumber: 1.9 Consensus size: 86
24518527 TACTTCGGTA
* * * * *
24518537 TATTCGATGATGCACTGTATGTGCCAGTGTATTTGCTTCAGTATATCCGATGATGCACTGTATGT
1 TATTCGATGATGCACTG-ATGTGCCAATATATTTACTTCAATATATCCGATGATACACTGTATGT
24518602 GCCAGTATATTTGCTAGCAGTT
65 GCCAGTATATTTGCTAGCAGTT
*
24518624 TATTTGATGATGCACTG-TGTGCCAATATATTTACATT-AATATATCCGATGATACACTGTATGT
1 TATTCGATGATGCACTGATGTGCCAATATATTTAC-TTCAATATATCCGATGATACACTGTATGT
*
24518687 GTCAGTATATTTG
65 GCCAGTATATTTG
24518700 TTTTGGTATA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
85 50 0.74
86 2 0.03
87 16 0.24
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.39
Consensus pattern (86 bp):
TATTCGATGATGCACTGATGTGCCAATATATTTACTTCAATATATCCGATGATACACTGTATGTG
CCAGTATATTTGCTAGCAGTT
Found at i:24518763 original size:128 final size:130
Alignment explanation
Indices: 24518535--24518785 Score: 328
Period size: 128 Copynumber: 1.9 Consensus size: 130
24518525 TATACTTCGG
* * * *
24518535 TATATTCGATGATGCACTGTATGTGCCAGTGTATTTGCTTCAGTATATCCGATGATGCACTGTAT
1 TATATCCGATGATACACTGTATGTGCCAGTATATTTGCTTCAGTATATCCGATGATGCACTATAT
* * * * * *
24518600 GTGCCAGTATATTTGCTAGCAGTTTATTTGATGATGCACTGTGTGC-C-AATATATTTACATTAA
66 GTACCAATATAGTAGCTAGCAGTTCATCTGATGATGCACTGTGTGCACAAATATATTTACATTAA
* * **
24518663 TATATCCGATGATACACTGTATGTGTCAGTATATTTGTTTTGGTATATCCGATGATGCACTATAT
1 TATATCCGATGATACACTGTATGTGCCAGTATATTTGCTTCAGTATATCCGATGATGCACTATAT
* *
24518728 GTACCAATATAGTAGCT-TCGGTTCCATCTGATGATGCACTGTGTGCACAAATATATTT
66 GTACCAATATAGTAGCTAGCAGTT-CATCTGATGATGCACTGTGTGCACAAATATATTT
24518786 TCTTCGGTTT
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
127 4 0.04
128 90 0.87
129 1 0.01
130 9 0.09
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.39
Consensus pattern (130 bp):
TATATCCGATGATACACTGTATGTGCCAGTATATTTGCTTCAGTATATCCGATGATGCACTATAT
GTACCAATATAGTAGCTAGCAGTTCATCTGATGATGCACTGTGTGCACAAATATATTTACATTAA
Found at i:24518781 original size:44 final size:43
Alignment explanation
Indices: 24518713--24518859 Score: 141
Period size: 44 Copynumber: 3.4 Consensus size: 43
24518703 TGGTATATCC
* * * * *
24518713 GATGATGCACTATATGTACCAATATAGTAGCTTCGGTTCCATCT
1 GATGATGCACTGTGTGCACAAATATAGTAACTTCGGTT-CATCT
* ** *
24518757 GATGATGCACTGTGTGCACAAATATATTTTCTTCGGTTTATCT
1 GATGATGCACTGTGTGCACAAATATAGTAACTTCGGTTCATCT
* * * * *
24518800 GATGATGCACCGTGTGCGCTAGTATAGTAACTTTGGTTTCATCT
1 GATGATGCACTGTGTGCACAAATATAGTAACTTCGG-TTCATCT
*
24518844 GATGATGCATTGTGTG
1 GATGATGCACTGTGTG
24518860 TGCCAGTATA
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
43 32 0.39
44 51 0.61
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.37
Consensus pattern (43 bp):
GATGATGCACTGTGTGCACAAATATAGTAACTTCGGTTCATCT
Found at i:24518783 original size:87 final size:86
Alignment explanation
Indices: 24518529--24519025 Score: 278
Period size: 87 Copynumber: 5.8 Consensus size: 86
24518519 GTAGGTTATA
* * * * * * * *
24518529 CTTCGGTATATTCGATGATGCACTGTATGTGCCAGTGTATTTGCTTCAGTAT-ATCCGATGATGC
1 CTTCGGTATATCCGATGATGCACTGTATGTGCCAATATAGTAGCTTCGGTTTCATCTGATGATGC
*
24518593 ACTGTATGTGCC-AGTATATTTG
66 ACTG--TGTGCCAAATATATTTG
* * * ** * ** * *
24518615 CTAGCAGTTTATTTGATGATGCACTG--TGTGCCAATATATTTA-CATT-AATAT-ATCCGATGA
1 CT-TCGGTATATCCGATGATGCACTGTATGTGCCAATATA-GTAGC-TTCGGTTTCATCTGATGA
* * *
24518675 TACACTGTATGTGTC-AGTATATTTG
63 TGCACTG--TGTGCCAAATATATTTG
* * * * *
24518700 TTTTGGTATATCCGATGATGCACTATATGTACCAATATAGTAGCTTCGGTTCCATCTGATGATGC
1 CTTCGGTATATCCGATGATGCACTGTATGTGCCAATATAGTAGCTTCGGTTTCATCTGATGATGC
*
24518765 ACTGTGTGCACAAATATATTTT
66 ACTGTGTGC-CAAATATATTTG
* * * * * * * * *
24518787 CTTCGGTTTATCTGATGATGCACCGTGTGCGCTAGTATAGTAACTTTGGTTTCATCTGATGATGC
1 CTTCGGTATATCCGATGATGCACTGTATGTGCCAATATAGTAGCTTCGGTTTCATCTGATGATGC
* * *
24518852 ATTGTGTGTGCC-AGTATATTTA
66 A--CTGTGTGCCAAATATATTTG
* * * * * * * * * * * * *
24518874 CTTTGGTATATCCAACGTTGCACTGCATGTGCCAAAATATTTGCTTCGATAT-ATCCGATGTTAC
1 CTTCGGTATATCCGATGATGCACTGTATGTGCCAATATAGTAGCTTCGGTTTCATCTGATGATGC
24518938 ACTGTATGTGCCAAA-ATATTTG
66 ACTG--TGTGCCAAATATATTTG
* * * ** *
24518960 CTTCGGTATATCCGATGATGCATTGTGTGTGCCAGTATAGTAGCTTCATTTTCATCTAATGATGC
1 CTTCGGTATATCCGATGATGCACTGTATGTGCCAATATAGTAGCTTCGGTTTCATCTGATGATGC
24519025 A
66 A
24519026 TTGTCTGTGC
Statistics
Matches: 306, Mismatches: 89, Indels: 31
0.72 0.21 0.07
Matches are distributed among these distances:
84 18 0.06
85 56 0.18
86 80 0.26
87 144 0.47
88 1 0.00
89 7 0.02
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.38
Consensus pattern (86 bp):
CTTCGGTATATCCGATGATGCACTGTATGTGCCAATATAGTAGCTTCGGTTTCATCTGATGATGC
ACTGTGTGCCAAATATATTTG
Found at i:24518868 original size:44 final size:43
Alignment explanation
Indices: 24518529--24519112 Score: 293
Period size: 43 Copynumber: 13.6 Consensus size: 43
24518519 GTAGGTTATA
* * * *
24518529 CTTCGGTATAT-TCGATGATGCACTGTATGTGCCAGTGTATTTG
1 CTTCGGTTTATCT-GATGATGCACTGTGTGTGCCAGTATATTAG
* * * * *
24518572 CTTCAGTATATCCGATGATGCACTGTATGTGCCAGTATATTTG
1 CTTCGGTTTATCTGATGATGCACTGTGTGTGCCAGTATATTAG
* * * *
24518615 CTAGCAGTTTATTTGATGATGCAC--TGTGTGCCAATATATTTA-
1 CT-TCGGTTTATCTGATGATGCACTGTGTGTGCCAGTATA-TTAG
** * * * * * *
24518657 CATT-AATATATCCGATGATACACTGTATGTGTCAGTATATTTG
1 C-TTCGGTTTATCTGATGATGCACTGTGTGTGCCAGTATATTAG
* * * * * * * * *
24518700 TTTTGGTATATCCGATGATGCACTATATGTACCAATATAGTAG
1 CTTCGGTTTATCTGATGATGCACTGTGTGTGCCAGTATATTAG
* ** * * **
24518743 CTTCGGTTCCATCTGATGATGCACTGTGTGCACAAATATATTTT
1 CTTCGGTT-TATCTGATGATGCACTGTGTGTGCCAGTATATTAG
* * * * *
24518787 CTTCGGTTTATCTGATGATGCACCGTGTGCGCTAGTATAGTAA
1 CTTCGGTTTATCTGATGATGCACTGTGTGTGCCAGTATATTAG
* *
24518830 CTTTGGTTTCATCTGATGATGCATTGTGTGTGCCAGTATATTTA-
1 CTTCGGTTT-ATCTGATGATGCACTGTGTGTGCCAGTATA-TTAG
* * ** * * ** ** *
24518874 CTTTGGTATATCCAACGTTGCACTGCATGTGCCAAAATATTTG
1 CTTCGGTTTATCTGATGATGCACTGTGTGTGCCAGTATATTAG
* * * * * * ** *
24518917 CTTCGATATATCCGATGTTACACTGTATGTGCCAAAATATTTG
1 CTTCGGTTTATCTGATGATGCACTGTGTGTGCCAGTATATTAG
* * * *
24518960 CTTCGGTATATCCGATGATGCATTGTGTGTGCCAGTATAGTAG
1 CTTCGGTTTATCTGATGATGCACTGTGTGTGCCAGTATATTAG
** * * * **
24519003 CTTCATTTTCATCTAATGATGCATTGTCTGTGCCAGTATAACAG
1 CTTCGGTTT-ATCTGATGATGCACTGTGTGTGCCAGTATATTAG
* * * * *
24519047 CTTTGGTTTAATCTGATGATGCACTTTGTGTGCTAATATATTTG
1 CTTCGGTTT-ATCTGATGATGCACTGTGTGTGCCAGTATATTAG
* *
24519091 CTCCGG--TATCTGATAATGCACT
1 CTTCGGTTTATCTGATGATGCACT
24519113 ATAACACCTC
Statistics
Matches: 422, Mismatches: 106, Indels: 28
0.76 0.19 0.05
Matches are distributed among these distances:
41 28 0.07
42 20 0.05
43 223 0.53
44 149 0.35
45 2 0.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (43 bp):
CTTCGGTTTATCTGATGATGCACTGTGTGTGCCAGTATATTAG
Found at i:24519672 original size:15 final size:15
Alignment explanation
Indices: 24519652--24519694 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
24519642 CATGTAACAT
24519652 GACCGTGTGTCACAC
1 GACCGTGTGTCACAC
* *
24519667 GACCGT-T-TAACAT
1 GACCGTGTGTCACAC
24519680 GACCGTGTGTCACAC
1 GACCGTGTGTCACAC
24519695 ATGGCTGAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
13 10 0.45
14 2 0.09
15 10 0.45
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (15 bp):
GACCGTGTGTCACAC
Found at i:24519685 original size:13 final size:15
Alignment explanation
Indices: 24519644--24519689 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
24519634 CACACGGCCA
24519644 TGTAACATGACCGTG
1 TGTAACATGACCGTG
* *
24519659 TGTCACACGACCGT-
1 TGTAACATGACCGTG
24519673 T-TAACATGACCGTG
1 TGTAACATGACCGTG
24519687 TGT
1 TGT
24519690 CACACATGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 10 0.40
14 2 0.08
15 13 0.52
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (15 bp):
TGTAACATGACCGTG
Found at i:24521499 original size:27 final size:27
Alignment explanation
Indices: 24521462--24521610 Score: 128
Period size: 27 Copynumber: 5.6 Consensus size: 27
24521452 AAACATACAT
* **
24521462 CACATAGGGGCAAAACAGTCATCCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
24521489 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
24521516 CTCATAAGGGCAAAATC-GTTATTTTAC
1 CACATAAGGGCAAAA-CAGTCATTTTAC
* *
24521543 CACATAAGGG-AAAATCTGTCATTTTAA
1 CACATAAGGGCAAAA-CAGTCATTTTAC
* *
24521570 CACATAA-TG-AAGAATC-GTCATTTTAA
1 CACATAAGGGCAA-AA-CAGTCATTTTAC
*
24521596 CACATAAGAGCAAAA
1 CACATAAGGGCAAAA
24521611 TTGTCAATTT
Statistics
Matches: 105, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
26 26 0.25
27 77 0.73
28 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:24521576 original size:54 final size:52
Alignment explanation
Indices: 24521486--24521621 Score: 148
Period size: 53 Copynumber: 2.5 Consensus size: 52
24521476 ACAGTCATCC
* * * *
24521486 TACCACATAAGGGCAAAATAGTCATTTTACCTCATAAGGGCAA-AATCGTTATTT
1 TACCACATAAGGG-AAAATTGTCATTTTAACACATAA-GG-AAGAATCGTCATTT
*
24521540 TACCACATAAGGGAAAATCTGTCATTTTAACACATAATGAAGAATCGTCATTT
1 TACCACATAAGGGAAAAT-TGTCATTTTAACACATAAGGAAGAATCGTCATTT
* * *
24521593 TAACACATAAGAGCAAAATTGTCAATTTA
1 TACCACATAAG-GGAAAATTGTCATTTTA
24521622 CCTTACAAAG
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
52 2 0.03
53 35 0.49
54 34 0.48
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (52 bp):
TACCACATAAGGGAAAATTGTCATTTTAACACATAAGGAAGAATCGTCATTT
Found at i:24521593 original size:53 final size:53
Alignment explanation
Indices: 24521462--24521621 Score: 155
Period size: 54 Copynumber: 3.0 Consensus size: 53
24521452 AAACATACAT
* ** * *
24521462 CACATAGGGGCAAAA-CAGTCATCCTACCACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATC-GTCATTTTACCACATAAGGG-AAAATTGTCATTTTAA
* *
24521516 CTCATAAGGGCAAAATCGTTATTTTACCACATAAGGGAAAATCTGTCATTTTAA
1 CACATAAGGGCAAAATCGTCATTTTACCACATAAGGGAAAAT-TGTCATTTTAA
* * * *
24521570 CACATAA-TG-AAGAATCGTCATTTTAACACATAAGAGCAAAATTGTCAATTTA
1 CACATAAGGGCAA-AATCGTCATTTTACCACATAAG-GGAAAATTGTCATTTTA
24521622 CCTTACAAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 35 0.39
54 51 0.57
55 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (53 bp):
CACATAAGGGCAAAATCGTCATTTTACCACATAAGGGAAAATTGTCATTTTAA
Found at i:24521596 original size:26 final size:26
Alignment explanation
Indices: 24521489--24521621 Score: 133
Period size: 27 Copynumber: 5.0 Consensus size: 26
24521479 GTCATCCTAC
* *
24521489 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGG-AAAATCGTCATTTTAA
* * *
24521516 CTCATAAGGGCAAAATCGTTATTTTAC
1 CACATAAGGG-AAAATCGTCATTTTAA
24521543 CACATAAGGGAAAATCTGTCATTTTAA
1 CACATAAGGGAAAATC-GTCATTTTAA
*
24521570 CACATAA-TGAAGAATCGTCATTTTAA
1 CACATAAGGGAA-AATCGTCATTTTAA
* * *
24521596 CACATAAGAGCAAAATTGTCAATTTA
1 CACATAAG-GGAAAATCGTCATTTTA
24521622 CCTTACAAAG
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 26 0.29
27 63 0.69
28 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.29
Consensus pattern (26 bp):
CACATAAGGGAAAATCGTCATTTTAA
Found at i:24528038 original size:20 final size:20
Alignment explanation
Indices: 24528013--24528057 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
24528003 TTCTCGCTAA
24528013 GTTCAGTCCAATACAAAGGT
1 GTTCAGTCCAATACAAAGGT
24528033 GTTCAGTCCAATACAAAGGT
1 GTTCAGTCCAATACAAAGGT
24528053 GTTCA
1 GTTCA
24528058 ACACTTTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (20 bp):
GTTCAGTCCAATACAAAGGT
Found at i:24529980 original size:16 final size:16
Alignment explanation
Indices: 24529959--24530011 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
24529949 CCTGTTCTTG
24529959 ATTGTCACTTTATTCA
1 ATTGTCACTTTATTCA
* * *
24529975 ATTGTC-TTGTTCTT-G
1 ATTGTCACT-TTATTCA
24529990 ATTGTCACTTTATTCA
1 ATTGTCACTTTATTCA
24530006 ATTGTC
1 ATTGTC
24530012 TGTAGTCTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
15 11 0.39
16 17 0.61
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (16 bp):
ATTGTCACTTTATTCA
Found at i:24529989 original size:31 final size:31
Alignment explanation
Indices: 24529951--24530012 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
24529941 AAAGGATACC
24529951 TGTTCTTGATTGTCACTTTATTCAATTGTCT
1 TGTTCTTGATTGTCACTTTATTCAATTGTCT
24529982 TGTTCTTGATTGTCACTTTATTCAATTGTCT
1 TGTTCTTGATTGTCACTTTATTCAATTGTCT
24530013 GTAGTCTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.16, G:0.13, T:0.55
Consensus pattern (31 bp):
TGTTCTTGATTGTCACTTTATTCAATTGTCT
Found at i:24532362 original size:93 final size:93
Alignment explanation
Indices: 24532203--24532385 Score: 321
Period size: 93 Copynumber: 2.0 Consensus size: 93
24532193 ATACCATTAA
** *
24532203 AATGTAACACCCCTAACTCGTATCTGTTGCCAGAATACGGTTACGAAGCATTACTAGAAAACACA
1 AATGTAACACCCCTAACTCGTATCCATCGCCAGAATACGGTTACGAAGCATTACTAGAAAACACA
24532268 CTTCATTCACAAACATTTATACATTTAT
66 CTTCATTCACAAACATTTATACATTTAT
* *
24532296 AATGTAACACCCCTAACTCGTATCCATCGCCAGAATAGGGTTACGAGGCATTACTAGAAAACACA
1 AATGTAACACCCCTAACTCGTATCCATCGCCAGAATACGGTTACGAAGCATTACTAGAAAACACA
24532361 CTTCATTCACAAACATTTATACATT
66 CTTCATTCACAAACATTTATACATT
24532386 CATACTTACA
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 85 1.00
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (93 bp):
AATGTAACACCCCTAACTCGTATCCATCGCCAGAATACGGTTACGAAGCATTACTAGAAAACACA
CTTCATTCACAAACATTTATACATTTAT
Found at i:24536803 original size:31 final size:31
Alignment explanation
Indices: 24536754--24536839 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
24536744 TCAATCTCAG
24536754 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
24536784 CATATCACTGAGCCAAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
24536815 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
24536840 TGTAACAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:24537113 original size:24 final size:24
Alignment explanation
Indices: 24537050--24537126 Score: 93
Period size: 24 Copynumber: 3.1 Consensus size: 24
24537040 GCCTAGCCTC
*
24537050 TTTTAATAACTGGGGCAAAAGCCCT
1 TTTTGATAACTGGGGC-AAAGCCCT
*
24537075 TTTTGATAAATTGGGGCAAAGCCCT
1 TTTTGAT-AACTGGGGCAAAGCCCT
*
24537100 TTTCTG-TAACTGGGGCATAGCCCT
1 TTT-TGATAACTGGGGCAAAGCCCT
24537124 TTT
1 TTT
24537127 GCACTTCCTC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
24 18 0.39
25 18 0.39
26 10 0.22
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (24 bp):
TTTTGATAACTGGGGCAAAGCCCT
Found at i:24537196 original size:20 final size:20
Alignment explanation
Indices: 24537173--24537217 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
24537163 TTATGAATAC
24537173 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
24537193 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
24537213 ATCAT
1 ATCAT
24537218 TATATCAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:24549640 original size:29 final size:27
Alignment explanation
Indices: 24549606--24549708 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
24549596 TACTCGATCA
*
24549606 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
24549635 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
24549664 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
24549693 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
24549709 ATCTTGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:24552997 original size:8 final size:8
Alignment explanation
Indices: 24552966--24552996 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
24552956 CTAGATCGGC
24552966 AAAAGCCA
1 AAAAGCCA
24552974 AAAAGCCA
1 AAAAGCCA
*
24552982 AAAAGCCG
1 AAAAGCCA
24552990 AAAAGCC
1 AAAAGCC
24552997 GGCATTTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.58, C:0.26, G:0.16, T:0.00
Consensus pattern (8 bp):
AAAAGCCA
Found at i:24553518 original size:26 final size:26
Alignment explanation
Indices: 24553470--24553536 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
24553460 AGGAAGTGCT
*
24553470 AAAAGGGCTATG-CCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCCAGTTTACCG
24553495 AAAAGGGCTTTGCCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCCAGTTTACCG
*
24553521 AAAACGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
24553537 AATTATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
25 11 0.28
26 28 0.72
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.21
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCCAGTTTACCG
Found at i:24553812 original size:31 final size:30
Alignment explanation
Indices: 24553761--24553843 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
24553751 CGCTTACAGT
24553761 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
24553791 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCC-AGTGATATGATTTATGA
*
24553822 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
24553844 TCAAGATTGA
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
30 18 0.36
31 30 0.60
32 2 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:24556193 original size:27 final size:27
Alignment explanation
Indices: 24556163--24556373 Score: 269
Period size: 27 Copynumber: 7.8 Consensus size: 27
24556153 ATTACCAAAG
* **
24556163 TACCATCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * **
24556190 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
24556217 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
24556244 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
24556271 TACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
24556298 TACCCTCGATTTATAAAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
24556325 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
24556352 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
24556374 TACAATACCC
Statistics
Matches: 159, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:24556229 original size:54 final size:54
Alignment explanation
Indices: 24556171--24556374 Score: 311
Period size: 54 Copynumber: 3.8 Consensus size: 54
24556161 AGTACCATCG
** * *
24556171 ATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCA
* * *
24556225 ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCTTCG
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCA
* *
24556279 ATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTA-TCATTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACT-GTTTTACCCTCA
24556333 ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACT
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACT
24556375 ACAATACCCT
Statistics
Matches: 135, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
54 134 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.42
Consensus pattern (54 bp):
ATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCA
Found at i:24556382 original size:27 final size:27
Alignment explanation
Indices: 24556217--24556437 Score: 129
Period size: 27 Copynumber: 8.2 Consensus size: 27
24556207 ATTACTGTTT
* * * ***
24556217 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
****
24556244 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
24556271 TACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
24556298 TACCCTCGATTTATAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
24556325 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* *
24556352 TACCCTCGATTTACAAAATTACTACAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
24556379 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
24556406 TACCCTC-AATTAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
24556433 TACCC
1 TACCC
24556438 CTAGCTTGTA
Statistics
Matches: 164, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 3 0.02
27 161 0.98
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:24556383 original size:81 final size:81
Alignment explanation
Indices: 24556138--24556416 Score: 288
Period size: 81 Copynumber: 3.4 Consensus size: 81
24556128 TACAGAAATG
* * *** * * * *
24556138 CCCTCGACTTGTAAAATTACCAAAGTACCATCGATTTATAGAATTACTGTTTTACCCTTGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTA
*
24556203 CAGAATTACTGTTTTA
66 CAGAATTACTATTTTA
* * * * * *
24556219 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCTTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTA
* *
24556284 TAGAATTACCATTTTA
66 CAGAATTACTATTTTA
* *
24556300 CCCTCGATTTATAAAATTATCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTA
* ***
24556365 CAAAATTACTACAATA
66 CAGAATTACTATTTTA
* * * ***
24556381 CCCTTGGTTTACAAAATTACCAAAATACCCTCAATT
1 CCCTCGATTTATAAAATTACCATTTTACCCTCAATT
24556417 AGTAAAATTA
Statistics
Matches: 161, Mismatches: 37, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 161 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTA
CAGAATTACTATTTTA
Found at i:24556399 original size:54 final size:53
Alignment explanation
Indices: 24556170--24556402 Score: 238
Period size: 54 Copynumber: 4.3 Consensus size: 53
24556160 AAGTACCATC
** * * ** *
24556170 GATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTC
1 GATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACT-CATTACCCTT
* *
24556224 AATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTAC-CGTTTTA-CCTT
1 GATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTC--ATTACCCTT
* *
24556277 CGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTA-TCATTTTACCCTC
1 -GATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTCA--TTACCCTT
* *
24556332 AATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTACAATACCCTT
1 GATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACT-CATTACCCTT
* * *
24556386 GGTTTACAAAATTACCA
1 GATTTATAGAATTACCA
24556403 AAATACCCTC
Statistics
Matches: 151, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
53 3 0.02
54 142 0.94
55 4 0.03
56 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (53 bp):
GATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTCATTACCCTT
Found at i:24556448 original size:27 final size:28
Alignment explanation
Indices: 24556393--24556519 Score: 104
Period size: 27 Copynumber: 4.7 Consensus size: 28
24556383 CTTGGTTTAC
24556393 AAAATTACCAAAATA-CCCTCAATTAGT
1 AAAATTACCAAAATACCCCTCAATTAGT
*
24556420 AAAATTACCAAAATACCCCT-AGCTT-GT
1 AAAATTACCAAAATACCCCTCA-ATTAGT
* * *
24556447 AAGATTACCAAAATACCCCT-GATTTGT
1 AAAATTACCAAAATACCCCTCAATTAGT
* * * * * *
24556474 GAAATTATCGAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCTCAATTAGT
*
24556501 AAAA-TATCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
24556520 ATAGGGTAGA
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
26 14 0.17
27 63 0.76
28 6 0.07
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (28 bp):
AAAATTACCAAAATACCCCTCAATTAGT
Found at i:24556548 original size:27 final size:27
Alignment explanation
Indices: 24556510--24556679 Score: 232
Period size: 27 Copynumber: 6.3 Consensus size: 27
24556500 TAAAATATCA
24556510 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
24556537 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
* *
24556564 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACCG
* * *
24556591 AAATACCCATGTAGGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACCG
* * * *
24556618 AAATACCCTTGTAGGGTAAAAATACCG
1 AAATACCCCTATAGGGTAGAATTACCG
* *
24556645 AAATAACCCTATAGGATAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
*
24556672 AGATACCC
1 AAATACCC
24556680 TTGTGGGGTA
Statistics
Matches: 128, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAGAATTACCG
Found at i:24556579 original size:54 final size:54
Alignment explanation
Indices: 24556510--24556698 Score: 243
Period size: 54 Copynumber: 3.5 Consensus size: 54
24556500 TAAAATATCA
* *
24556510 AAATACCCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACCG
* * * * *
24556564 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCATGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACCG
* * * *
24556618 AAATACCCTTGTAGGGTAAAAATACCGAAATAACCCTATAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACCG
* * *
24556672 AGATACCCTTGTGGGGTAAAAATTACC
1 AAATACCCCTGTAGGGT-AAAATTACC
24556699 ATTTTGCCCC
Statistics
Matches: 117, Mismatches: 17, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
54 109 0.93
55 8 0.07
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACCG
Found at i:24556621 original size:81 final size:81
Alignment explanation
Indices: 24556510--24556698 Score: 234
Period size: 81 Copynumber: 2.3 Consensus size: 81
24556500 TAAAATATCA
* * * * * *
24556510 AAATACCCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCATGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACCGAAATAACCCTA
* *
24556575 TAGGGTAGAATTACTG
66 TAGGATAGAATTACCG
* * *
24556591 AAATACCCATGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAAAAATACCGAAATAACCCTA
1 AAATACCCATGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACCGAAATAACCCTA
24556656 TAGGATAGAATTACCG
66 TAGGATAGAATTACCG
* * * *
24556672 AGATACCCTTGTGGGGTAAAAATTACC
1 AAATACCCATGTAGGGT-AGAATTACC
24556699 ATTTTGCCCC
Statistics
Matches: 91, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
81 84 0.92
82 7 0.08
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
AAATACCCATGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAAAAATACCGAAATAACCCTA
TAGGATAGAATTACCG
Found at i:24556949 original size:26 final size:25
Alignment explanation
Indices: 24556901--24556971 Score: 124
Period size: 26 Copynumber: 2.8 Consensus size: 25
24556891 AGGAAGTGCT
*
24556901 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
24556926 AAAAGGGCTTTGCCCCCAGTTTACCG
1 AAAAGGGCTTTG-CCCCAGTTTACCG
24556952 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
24556972 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 19 0.43
26 25 0.57
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:24557243 original size:31 final size:30
Alignment explanation
Indices: 24557192--24557274 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
24557182 CGCTTACAGC
24557192 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
24557222 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCC-AGTGATATGATTTATGA
*
24557253 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
24557275 TCAAGACTGA
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
30 18 0.36
31 30 0.60
32 2 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:24568275 original size:17 final size:17
Alignment explanation
Indices: 24568253--24568286 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24568243 AGTCTCGTAT
* *
24568253 TCAAAATATATGCAATA
1 TCAAAACATATGAAATA
24568270 TCAAAACATATGAAATA
1 TCAAAACATATGAAATA
24568287 CATTTTTATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.26
Consensus pattern (17 bp):
TCAAAACATATGAAATA
Found at i:24573343 original size:23 final size:23
Alignment explanation
Indices: 24573313--24573358 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
24573303 ACTAAGCTTT
24573313 ATAGCTTACTTTGTTTATTTTTC
1 ATAGCTTACTTTGTTTATTTTTC
24573336 ATAGCTTACTTTGTTTATTTTTC
1 ATAGCTTACTTTGTTTATTTTTC
24573359 CCTTGTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.09, T:0.61
Consensus pattern (23 bp):
ATAGCTTACTTTGTTTATTTTTC
Found at i:24576065 original size:48 final size:48
Alignment explanation
Indices: 24576005--24576173 Score: 216
Period size: 48 Copynumber: 3.6 Consensus size: 48
24575995 AAGCTGACGT
*
24576005 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAAGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAAGCCAATG
* ** * *
24576053 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAAAGGCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAAGCCAATG
* * * * *
24576099 CATGTCCCAGACATGTCTTACACTTGCTGGTATATCTCGAGGCCTATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAAGCCAATG
*
24576147 CATGTCCCAGACATGCCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
24576174 ACACATATCA
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
46 38 0.37
47 3 0.03
48 61 0.60
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAAGCCAATG
Found at i:24580209 original size:24 final size:25
Alignment explanation
Indices: 24580156--24580203 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
24580146 TTAGCCCTCT
* *
24580156 CGAGCTTCCCGTTACATAGTTCTTG
1 CGAGCTTCACGTTACATAGCTCTTG
24580181 CGAGCTTCACGTTA-ATAGCTCTT
1 CGAGCTTCACGTTACATAGCTCTT
24580204 CAGAGCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (25 bp):
CGAGCTTCACGTTACATAGCTCTTG
Found at i:24582039 original size:39 final size:40
Alignment explanation
Indices: 24581973--24582157 Score: 209
Period size: 39 Copynumber: 4.7 Consensus size: 40
24581963 GGGTTTTACA
* *
24581973 TGATTATTTGAGTATTGTGATATATGCTAGAATGTTCTATG
1 TGATTATATGAGTATTGTGATATATGCTTGAATGTT-TATG
*
24582014 -G-TTATATGAGTATTGTGATACATGCTTGAAT-TTTATG
1 TGATTATATGAGTATTGTGATATATGCTTGAATGTTTATG
* *
24582051 TGATTATATAAGTATTGTGATATATACTTGAATG-TTATG
1 TGATTATATGAGTATTGTGATATATGCTTGAATGTTTATG
* ** *
24582090 TGATTATGTGAGTGCTGTGATATATGCTTAAATG-TTATG
1 TGATTATATGAGTATTGTGATATATGCTTGAATGTTTATG
* * * *
24582129 TGATTAAATGTGTAATGTAATATATGCTT
1 TGATTATATGAGTATTGTGATATATGCTT
24582158 AAAAGTAAAA
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
37 4 0.03
38 3 0.02
39 115 0.93
40 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.21, T:0.45
Consensus pattern (40 bp):
TGATTATATGAGTATTGTGATATATGCTTGAATGTTTATG
Found at i:24584124 original size:39 final size:39
Alignment explanation
Indices: 24584070--24584173 Score: 154
Period size: 39 Copynumber: 2.7 Consensus size: 39
24584060 TAAACTTGTT
* * *
24584070 TTTGAGGATTGTGATATATGCTTGAATGTTATGTGATTA
1 TTTGAGAATTGTGATATATGCTTAAATATTATGTGATTA
*
24584109 TTTGAGAATTATGATATATGCTTAAATATTATGTGATTA
1 TTTGAGAATTGTGATATATGCTTAAATATTATGTGATTA
* *
24584148 TATGAGTATTGTGATATATGCTTAAA
1 TTTGAGAATTGTGATATATGCTTAAA
24584174 AGTGAATATG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.45
Consensus pattern (39 bp):
TTTGAGAATTGTGATATATGCTTAAATATTATGTGATTA
Found at i:24584657 original size:31 final size:31
Alignment explanation
Indices: 24584622--24584683 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
24584612 TTATGGACGT
24584622 TTTGAGGTTTATTTGATATGGTAGAAGATGC
1 TTTGAGGTTTATTTGATATGGTAGAAGATGC
24584653 TTTGAGGTTTATTTGATATGGTAGAAGATGC
1 TTTGAGGTTTATTTGATATGGTAGAAGATGC
24584684 ATGTTGATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.42
Consensus pattern (31 bp):
TTTGAGGTTTATTTGATATGGTAGAAGATGC
Found at i:24596163 original size:25 final size:24
Alignment explanation
Indices: 24596135--24596182 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
24596125 GAAAAATCTG
*
24596135 AAAATTCATACAAATTATAAAAATA
1 AAAATTCAAACAAATTA-AAAAATA
* *
24596160 AAAATTTAAACATATTAAAAAAT
1 AAAATTCAAACAAATTAAAAAAT
24596183 TATGAAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
AAAATTCAAACAAATTAAAAAATA
Found at i:24596196 original size:18 final size:17
Alignment explanation
Indices: 24596146--24596206 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
24596136 AAATTCATAC
24596146 AAATTATAAA-AATAAA
1 AAATTATAAATAATAAA
* *
24596162 AATTTA-AACATATTAAA
1 AAATTATAA-ATAATAAA
24596179 AAATTATGAAATAATAAA
1 AAATTAT-AAATAATAAA
*
24596197 AAATCATAAA
1 AAATTATAAA
24596207 ATTTCCTGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
15 2 0.06
16 6 0.17
17 13 0.36
18 13 0.36
19 2 0.06
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (17 bp):
AAATTATAAATAATAAA
Found at i:24597003 original size:27 final size:26
Alignment explanation
Indices: 24596952--24597003 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
24596942 ATTATAAAAT
*
24596952 AAAGAAAGATAGAGAGAATAAAGAAA
1 AAAGAAAGATAGAAAGAATAAAGAAA
*
24596978 AAAGAAA-ATATGAAAGTAATAGAGAA
1 AAAGAAAGATA-GAAAG-AATAAAGAA
24597004 TGTAAGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 3 0.14
26 11 0.50
27 8 0.36
ACGTcount: A:0.67, C:0.00, G:0.21, T:0.12
Consensus pattern (26 bp):
AAAGAAAGATAGAAAGAATAAAGAAA
Found at i:24601341 original size:32 final size:33
Alignment explanation
Indices: 24601299--24601407 Score: 141
Period size: 33 Copynumber: 3.3 Consensus size: 33
24601289 AAGTGGTACA
* *
24601299 ACTTGAAAAGGTTATGTACACTTTGTGTGTA-C
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTATC
* *
24601331 ACTTGGAAAGGTTAGGTATACTTTGTGTATATC
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTATC
**
24601364 A-TATGAAAAGGAAAGGTATACTTTGTGTGTATC
1 ACT-TGAAAAGGTTAGGTATACTTTGTGTGTATC
24601397 ACTTGAAAAGG
1 ACTTGAAAAGG
24601408 AATGTACGCC
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
32 28 0.42
33 37 0.56
34 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.24, T:0.35
Consensus pattern (33 bp):
ACTTGAAAAGGTTAGGTATACTTTGTGTGTATC
Found at i:24604235 original size:41 final size:41
Alignment explanation
Indices: 24604190--24604307 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
24604180 TGAAAGATAA
24604190 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
24604231 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
24604261 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
24604302 ATGTAG
1 ATGTAG
24604308 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:24604246 original size:71 final size:71
Alignment explanation
Indices: 24604158--24604321 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
24604148 GAGATGTATC
24604158 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
24604223 AGGACA
66 AGGACA
24604229 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
24604294 AGGACA
66 AGGACA
24604300 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
24604322 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:24617697 original size:24 final size:23
Alignment explanation
Indices: 24617670--24617721 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
24617660 TTTTAAAGAC
24617670 TTTATT-TTTTCAAAAATAATTTTA
1 TTTATTATTTTCAAAAAT-A-TTTA
*
24617694 TTTATTAATTTTTAAAAATATTTA
1 TTTATT-ATTTTCAAAAATATTTA
24617718 TTTA
1 TTTA
24617722 AATTATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 14 0.56
25 1 0.04
26 10 0.40
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTATTATTTTCAAAAATATTTA
Found at i:24617715 original size:20 final size:22
Alignment explanation
Indices: 24617681--24617734 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 22
24617671 TTATTTTTTC
*
24617681 AAAAATAATTTTATTTATTAATTTTT
1 AAAAAT-A-TTTATTTA--AATTATT
24617707 AAAAATATTTATTTAAATTATT
1 AAAAATATTTATTTAAATTATT
24617729 AAAAAT
1 AAAAAT
24617735 CAAAATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 12 0.44
24 8 0.30
25 1 0.04
26 6 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AAAAATATTTATTTAAATTATT
Found at i:24622610 original size:40 final size:40
Alignment explanation
Indices: 24622504--24622682 Score: 265
Period size: 40 Copynumber: 4.5 Consensus size: 40
24622494 TGAATGATAC
* * *
24622504 CCGGGCTAAGTCCCGAAGGCATT-ATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
24622543 CCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
24622582 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* *
24622622 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
24622662 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
24622683 ATGGTTGTGG
Statistics
Matches: 129, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
38 11 0.09
39 32 0.25
40 86 0.67
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:24629839 original size:2 final size:2
Alignment explanation
Indices: 24629832--24629864 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
24629822 TCGGCTCTTG
24629832 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24629865 GTTTGCACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24630652 original size:40 final size:40
Alignment explanation
Indices: 24630597--24630800 Score: 225
Period size: 40 Copynumber: 5.1 Consensus size: 40
24630587 TGAATGATAC
* * *
24630597 CCGGGCTAAGTCCCGAAGGCAATTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG-TTATAT
*
24630637 CCGGGCTAAGACCCGAAGG-TATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
* * *
24630677 CTGGGCTAAGACCCGAATGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
* *
24630717 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
* * * ** *
24630757 CCGGGTTAAGACCTGAAGGCAATGGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
24630797 CCGG
1 CCGG
24630801 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
39 5 0.04
40 127 0.92
41 6 0.04
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
Found at i:24630794 original size:80 final size:80
Alignment explanation
Indices: 24630593--24630800 Score: 281
Period size: 80 Copynumber: 2.6 Consensus size: 80
24630583 CATTTGAATG
* * * *
24630593 ATACCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGTA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
*
24630658 TTCGTGCGAGTTGTT
66 TTCGTGCGAGTTGCT
* * * * * *
24630673 ATATCTGGGCTAAGACCCGAATGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
24630738 TTCGTGCGAGTTGCT
66 TTCGTGCGAGTTGCT
* * * *
24630753 ATACCCGGGTTAAGACCTGAAGGCAATGGTGCTTGTGGTTATATCCGG
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGG
24630801 TTAAATTCCG
Statistics
Matches: 107, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 107 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGCT
Found at i:24632837 original size:28 final size:28
Alignment explanation
Indices: 24632768--24632868 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
24632758 GACAAGATTG
* * * *
24632768 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
24632798 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
24632826 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
24632855 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
24632869 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:24637146 original size:26 final size:26
Alignment explanation
Indices: 24637115--24637169 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
24637105 TCTAGCACAT
* *
24637115 ATACTGATACTAGCAGCTTTGCTGCA
1 ATACTGATACCAGCAGCCTTGCTGCA
* *
24637141 ATACTGTTACCGGCAGCCTTGCTGCA
1 ATACTGATACCAGCAGCCTTGCTGCA
24637167 ATA
1 ATA
24637170 TTGGTGTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACTGATACCAGCAGCCTTGCTGCA
Found at i:24639347 original size:50 final size:50
Alignment explanation
Indices: 24639276--24639525 Score: 261
Period size: 50 Copynumber: 5.0 Consensus size: 50
24639266 TAAGATGGTT
* *
24639276 TTAGGTCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
** * * *
24639326 TTAGATTGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACA-AC
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC-AAATAG
* * * * *
24639377 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
* * * *
24639427 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATTG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
* ** * * * *
24639477 TT-GGTTGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATAG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
24639526 CTTCGGTTAC
Statistics
Matches: 166, Mismatches: 31, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
49 40 0.24
50 84 0.51
51 40 0.24
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAG
Found at i:24639410 original size:101 final size:101
Alignment explanation
Indices: 24639281--24639470 Score: 290
Period size: 101 Copynumber: 1.9 Consensus size: 101
24639271 TGGTTTTAGG
**
24639281 TCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTAC
1 TCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGATCACATGTGTAGTAC
*
24639346 TAAGTGCAGGCTACTATGTGTACCCGACAACTTCGA
66 TAAGTGCAGGCTACTACGTGTACCCGACAACTTCGA
* * * * * * *
24639382 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGATCACATGTGTAGTAC
24639447 TAAGTGCAGGCTACTACGTGTACC
66 TAAGTGCAGGCTACTACGTGTACC
24639471 GAATTGTTGG
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (101 bp):
TCACATGTGTAATACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGATCACATGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCCGACAACTTCGA
Found at i:24639415 original size:28 final size:28
Alignment explanation
Indices: 24639384--24639467 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
24639374 AACTTCGATC
24639384 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
24639412 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
24639434 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
24639462 ACGTGT
1 ACGTGT
24639468 ACCGAATTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:24639554 original size:150 final size:152
Alignment explanation
Indices: 24639237--24639557 Score: 403
Period size: 150 Copynumber: 2.1 Consensus size: 152
24639227 GAACACATGT
* * * *
24639237 GTAGTACTATGTGCGGGCTACTATATGTTTAAGATGGTTTTAGGTCACATGTGTAATACTAAGTG
1 GTAGTAATATGTGCAGGCTACTACATGTATAAGATGG-TTTAGGTCACATGTGTAATACTAAGTG
*
24639302 CAGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTACTAAGTGCAGGCTACTATGTGT
65 CAGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
* ** *
24639367 ACCCGACAACTTCGATCACGTGT
130 ACCAGACAACTTCGATCACAAGG
* * * * * *
24639390 GTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTAAGTGC
1 GTAGTAATATGTGCAGGCTACTACATGTATAAGATGGTTTAGGTCACATGTGTAATACTAAGTGC
* * * *
24639454 AGGCTACTACGTGTACCGAATTGTT-GGTTGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTA
66 AGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
* * * *
24639518 CCAGATAGCTTCGGTTACAAGG
131 CCAGACAACTTCGATCACAAGG
*
24639540 GTGGTAATATGTGCAGGC
1 GTAGTAATATGTGCAGGC
24639558 AACCGTGTAT
Statistics
Matches: 144, Mismatches: 24, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
150 65 0.45
151 48 0.33
153 31 0.22
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (152 bp):
GTAGTAATATGTGCAGGCTACTACATGTATAAGATGGTTTAGGTCACATGTGTAATACTAAGTGC
AGGCTACTACGTGTACCAAATAGTTAGATTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
CCAGACAACTTCGATCACAAGG
Found at i:24644668 original size:42 final size:42
Alignment explanation
Indices: 24644621--24644765 Score: 125
Period size: 42 Copynumber: 3.4 Consensus size: 42
24644611 TACCACACCA
* * *
24644621 ATGCCATATCCCAGATACGGTCTTATAT-AGGATCT-AGTTTCG
1 ATGCCATATCCCAGATATGGTCTTATATGA-AATCTCA-TATCG
* * * * *
24644663 ATGCCAATAGCCTAGCTATAGTCTTACATGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTATATGAAATCTCATATCG
**
24644706 ATGCCATATCCCAGATATGGTCTTATACAAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTATATGAAATCTCAT-ATCG
* *
24644748 ATGTCATATCCTAGATAT
1 ATGCCATATCCCAGATAT
24644766 TGTCATACAG
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 48 0.59
43 32 0.39
44 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTATATGAAATCTCATATCG
Found at i:24648626 original size:63 final size:63
Alignment explanation
Indices: 24648524--24648648 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
24648514 ATCCTTGGCA
24648524 AAGGATACTTGTTCTTTATAGTCACCTTGTTGAGCTGTCGGTAATCGATACAAAGTCTCATAC
1 AAGGATACTTGTTCTTTATAGTCACCTTGTTGAGCTGTCGGTAATCGATACAAAGTCTCATAC
*
24648587 AAGGATACTTGTTCTTTATAGTCACCTTGTTGAGTTGTCGGTAATCGATACAAAGTCTCATA
1 AAGGATACTTGTTCTTTATAGTCACCTTGTTGAGCTGTCGGTAATCGATACAAAGTCTCATA
24648649 GACCTGTCTT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (63 bp):
AAGGATACTTGTTCTTTATAGTCACCTTGTTGAGCTGTCGGTAATCGATACAAAGTCTCATAC
Found at i:24653616 original size:42 final size:42
Alignment explanation
Indices: 24653505--24653654 Score: 171
Period size: 42 Copynumber: 3.5 Consensus size: 42
24653495 ACACCAATGT
* * * *
24653505 CATATCCCAGATATGGTCTTATATG-GGATCTCGTTTCGATGC
1 CATATCCCAGATATGGTCTTACATGAAG-TCTCATATCGATGC
* *
24653547 CAATAGCCCA-ACTATGGTCTTAAATGAAGTCTCATATCGATGC
1 C-ATATCCCAGA-TATGGTCTTACATGAAGTCTCATATCGATGC
* *
24653590 CATATCCCAGATATGGTCTTACATGAAATCTCATAAT-GATGT
1 CATATCCCAGATATGGTCTTACATGAAGTCTCAT-ATCGATGC
24653632 CATATCCCAGATATGGTCTTACA
1 CATATCCCAGATATGGTCTTACA
24653655 CATAGTCTTG
Statistics
Matches: 94, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
42 57 0.61
43 36 0.38
44 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGAAGTCTCATATCGATGC
Found at i:24654991 original size:18 final size:18
Alignment explanation
Indices: 24654968--24655002 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
24654958 TTATCAGTAC
24654968 CATTAGAGAA-TTCTTTAT
1 CATTAGA-AATTTCTTTAT
24654986 CATTAGAAATTTCTTTA
1 CATTAGAAATTTCTTTA
24655003 CCAACGGCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.46
Consensus pattern (18 bp):
CATTAGAAATTTCTTTAT
Found at i:24656408 original size:3 final size:3
Alignment explanation
Indices: 24656400--24656441 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
24656390 CGGTTGGCTT
24656400 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
24656442 AAAAAAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:24657439 original size:1 final size:1
Alignment explanation
Indices: 24657433--24657458 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
24657423 TCCCACTAAG
24657433 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
24657459 CTTTGAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:24661462 original size:23 final size:21
Alignment explanation
Indices: 24661410--24661463 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 21
24661400 CACTTTTTTA
* *
24661410 TAAAATCCTGAAACTAAGTTT
1 TAAAATCCTAAAACTAAATTT
*
24661431 T-AGATCCTAAAACTGAAAATTT
1 TAAAATCCTAAAACT--AAATTT
24661453 TAAAATCCTAA
1 TAAAATCCTAA
24661464 CCTTTTCTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 11 0.42
21 1 0.04
22 6 0.23
23 8 0.31
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.31
Consensus pattern (21 bp):
TAAAATCCTAAAACTAAATTT
Found at i:24669865 original size:31 final size:31
Alignment explanation
Indices: 24669827--24669889 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
24669817 GACATGATAG
24669827 ATCCTGATTTATTAAGTTTTATTTTAGATTT
1 ATCCTGATTTATTAAGTTTTATTTTAGATTT
24669858 ATCCTGATTTATTAAGTTTTATTTTAGATTT
1 ATCCTGATTTATTAAGTTTTATTTTAGATTT
24669889 A
1 A
24669890 GTTTACAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.27, C:0.06, G:0.10, T:0.57
Consensus pattern (31 bp):
ATCCTGATTTATTAAGTTTTATTTTAGATTT
Found at i:24670596 original size:24 final size:24
Alignment explanation
Indices: 24670569--24670614 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
24670559 CTAATTTTAA
*
24670569 ATTAGAACTTAAACACTAAAAAAT
1 ATTAGAACTCAAACACTAAAAAAT
* *
24670593 ATTAGGACTCAAACATTAAAAA
1 ATTAGAACTCAAACACTAAAAA
24670615 GTGATTCATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.24
Consensus pattern (24 bp):
ATTAGAACTCAAACACTAAAAAAT
Found at i:24674762 original size:26 final size:27
Alignment explanation
Indices: 24674706--24674796 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
24674696 ATGAACTATC
* * *
24674706 TTTGTGGCGTAAACGTAAAGGAACG-T
1 TTTGTGGCATAATCGTAAAGGAATGCT
24674732 ATTTGTGGCATAATCG-AAAGGAATGCT
1 -TTTGTGGCATAATCGTAAAGGAATGCT
* *
24674759 TTTGTGGCATAATTGTAAAGGAATGCC
1 TTTGTGGCATAATCGTAAAGGAATGCT
24674786 TTTGTGGCATA
1 TTTGTGGCATA
24674797 TTATGAATGA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 22 0.39
27 35 0.61
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (27 bp):
TTTGTGGCATAATCGTAAAGGAATGCT
Found at i:24674812 original size:27 final size:26
Alignment explanation
Indices: 24674733--24674829 Score: 95
Period size: 27 Copynumber: 3.7 Consensus size: 26
24674723 AAGGAACGTA
* ** *
24674733 TTTGTGGCATAATCGAAAGGAATGCT
1 TTTGTGGCATATTATAAAGGAATGCC
*
24674759 TTTGTGGCATAATTGTAAAGGAATGCC
1 TTTGTGGCAT-ATTATAAAGGAATGCC
* *
24674786 TTTGTGGCATATTATGAATGAACTGCC
1 TTTGTGGCATATTATAAAGGAA-TGCC
* *
24674813 TTCGTGGCATATCATAA
1 TTTGTGGCATATTATAA
24674830 CAATACCCTT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
26 19 0.32
27 40 0.68
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (26 bp):
TTTGTGGCATATTATAAAGGAATGCC
Found at i:24679782 original size:21 final size:22
Alignment explanation
Indices: 24679743--24679786 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
24679733 ATAAATTTTG
* *
24679743 ATTTTTAATAATTTAAATAAAT
1 ATTTTTAAAAAATTAAATAAAT
24679765 ATTTTTAAAAAATT-AATAAAT
1 ATTTTTAAAAAATTAAATAAAT
24679786 A
1 A
24679787 AAATTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTTTTAAAAAATTAAATAAAT
Found at i:24693249 original size:71 final size:71
Alignment explanation
Indices: 24693163--24693326 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
24693153 CGATTTGTCT
24693163 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24693228 CTTTCA
66 CTTTCA
24693234 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24693299 CTTTCA
66 CTTTCA
24693305 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
24693327 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:24693364 original size:71 final size:70
Alignment explanation
Indices: 24693163--24693360 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
24693153 CGATTTGTCT
* * * *
24693163 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24693228 CTTTCA
65 CTTTCA
* * * *
24693234 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24693299 CTTTCA
65 CTTTCA
* *
24693305 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
24693361 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:24695144 original size:30 final size:29
Alignment explanation
Indices: 24695103--24695159 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 29
24695093 ATATCCGGAC
24695103 TAAGATCCGAAGGCATTTGTGCGAGTTACGG
1 TAAGATCCGAAGGCA-TTGTG-GAGTTACGG
24695134 TAAG-TCCGAAGGCATTGTGGAGTTAC
1 TAAGATCCGAAGGCATTGTGGAGTTAC
24695160 TAATTCCGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 7 0.27
29 5 0.19
30 10 0.38
31 4 0.15
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TAAGATCCGAAGGCATTGTGGAGTTACGG
Found at i:24695207 original size:39 final size:39
Alignment explanation
Indices: 24695134--24695264 Score: 182
Period size: 38 Copynumber: 3.4 Consensus size: 39
24695124 CGAGTTACGG
*
24695134 TAAGT-CCGAAGGCATTGTG-GAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGC
*
24695171 TAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATT-GTGCGAGTTACTAAATCCGGGC
24695210 TAAGTCCCGAAGGCATT-TGCGAGTTACTATAA-CCGGGC
1 TAAGTCCCGAAGGCATTGTGCGAGTTACTA-AATCCGGGC
*
24695248 TATGTCCCGAAGGCATT
1 TAAGTCCCGAAGGCATT
24695265 TGAACGAGTA
Statistics
Matches: 85, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
37 15 0.18
38 36 0.42
39 22 0.26
40 12 0.14
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGC
Found at i:24695288 original size:77 final size:76
Alignment explanation
Indices: 24695134--24695299 Score: 187
Period size: 77 Copynumber: 2.2 Consensus size: 76
24695124 CGAGTTACGG
* **
24695134 TAAGTCCGAAGGCATTGTGGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTAC
1 TAAGTCCGAAGGCATTGTGGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTAC
24695199 TAAATCCGGGT
66 TAAATCCGGGT
* *
24695210 TAAGTCCCGAAGGCATT-TGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGT-CCGAAGGCATTGTG-GAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAG
*
24695273 -TAGCTATATCC-GGT
62 TTA-CTAAATCCGGGT
*
24695287 TAAATTCCGAAGG
1 T-AAGTCCGAAGG
24695300 TACGTGATTC
Statistics
Matches: 77, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
76 9 0.12
77 41 0.53
78 27 0.35
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (76 bp):
TAAGTCCGAAGGCATTGTGGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTAC
TAAATCCGGGT
Found at i:24703326 original size:40 final size:39
Alignment explanation
Indices: 24703097--24703319 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 39
24703087 TCGAATGATG
* *
24703097 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
24703137 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
24703176 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGA-TTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
24703214 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
24703254 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
24703294 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24703320 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 10, Indels: 16
0.86 0.05 0.08
Matches are distributed among these distances:
38 24 0.15
39 58 0.35
40 75 0.45
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:24710712 original size:119 final size:120
Alignment explanation
Indices: 24710489--24710713 Score: 300
Period size: 119 Copynumber: 1.9 Consensus size: 120
24710479 TCGAATGATG
* *
24710489 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
24710554 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
24710609 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCAGG-TTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCC-GGACTAAGAT-CCGAAGGCA
* *
24710670 TTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCTGAAGGCATTTG
63 TTTGTGCGAGTTACTA-AATCCGGACTAAGATCC-GAAGGCATTTG
24710714 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
118 4 0.04
119 68 0.73
120 21 0.23
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:24710720 original size:40 final size:40
Alignment explanation
Indices: 24710489--24710713 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
24710479 TCGAATGATG
* * *
24710489 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
24710529 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24710569 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24710609 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24710648 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
24710689 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24710714 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24710735 original size:79 final size:78
Alignment explanation
Indices: 24710496--24710736 Score: 283
Period size: 79 Copynumber: 3.0 Consensus size: 78
24710486 ATGTCCGGGC
* * *
24710496 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCGAAGGCATTTGTGCGA
*
24710560 GTTACTAAATCCGGAC
64 GTTACTAAATCCGG-T
* *
24710576 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAGCCCGAAGGCATTGGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCATTTGTGCGA
24710639 GTTACTAAATCCAGGT
64 GTTACTAAATCC-GGT
* * **
24710655 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCTGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC-GAAGGCATTTGTGCGAG
*
24710720 -TAGCTATATCCGGT
65 TTA-CTAAATCCGGT
24710734 TAA
1 TAA
24710737 ATTCTGAAGG
Statistics
Matches: 140, Mismatches: 13, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
78 1 0.01
79 78 0.56
80 53 0.38
81 8 0.06
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGT
TACTAAATCCGGT
Found at i:24716356 original size:48 final size:48
Alignment explanation
Indices: 24716285--24716381 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
24716275 ATTATATAAG
24716285 TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
1 TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
24716333 TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
1 TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
24716381 T
1 T
24716382 CGGGGGAAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.47, C:0.02, G:0.16, T:0.34
Consensus pattern (48 bp):
TTAAATTTGAATTTATATAGATCAAGAAAGAAAGAAATTAGATTTGGA
Found at i:24716703 original size:43 final size:42
Alignment explanation
Indices: 24716642--24716780 Score: 147
Period size: 43 Copynumber: 3.3 Consensus size: 42
24716632 ACTTCTGAGG
* * *
24716642 TGTGATTTCATGCAAGACCATGTCTAGGACATTGGCATCGATA
1 TGTGATTACATGTAAGACCATGTCTAGGATA-TGGCATCGATA
* * * * *
24716685 TGAGATTACATGTAAGACCCTGTCTGGGATAGAGGCATCAATA
1 TGTGATTACATGTAAGACCATGTCTAGGATA-TGGCATCGATA
* * *
24716728 TGTGATAACATGTAAGACCATATCTAGGATATGGCATTG-TA
1 TGTGATTACATGTAAGACCATGTCTAGGATATGGCATCGATA
24716769 TGTGA-TACATGT
1 TGTGATTACATGT
24716781 GTTTCTGAGT
Statistics
Matches: 78, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
40 6 0.08
41 7 0.09
42 5 0.06
43 60 0.77
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTAGGATATGGCATCGATA
Found at i:24723892 original size:25 final size:25
Alignment explanation
Indices: 24723858--24723914 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
24723848 TATGTCTAGG
24723858 CCAACCAGCTTCTTCTCACTAAGCT
1 CCAACCAGCTTCTTCTCACTAAGCT
24723883 CCAACCAGCTTCTTCTCACTAAGCT
1 CCAACCAGCTTCTTCTCACTAAGCT
24723908 CCAACCA
1 CCAACCA
24723915 ACAAACAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.26, C:0.42, G:0.07, T:0.25
Consensus pattern (25 bp):
CCAACCAGCTTCTTCTCACTAAGCT
Found at i:24726112 original size:29 final size:29
Alignment explanation
Indices: 24726078--24726155 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
24726068 GTGACGAGAT
* *
24726078 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
24726107 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
24726136 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
24726156 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:24728961 original size:2 final size:2
Alignment explanation
Indices: 24728954--24728988 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
24728944 ACATGAATGC
*
24728954 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24728989 AGCTTAGAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24734566 original size:50 final size:48
Alignment explanation
Indices: 24734497--24734631 Score: 155
Period size: 48 Copynumber: 2.7 Consensus size: 48
24734487 GTGAACATGC
24734497 ATATGTGTGATAAAGCCGAATGG-TCAATGTCAAATATATATATGAGATATGT
1 ATATGTG-G-TAAAGCCGAATGGCT-AATGT-AAA-ATATATATGAGATATGT
* * * *
24734549 ATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTAAAATATATATGAGATATGT
* * *
24734597 ATATGTGGTAAAGCCAAATGGCTAGTGTGAAATAT
1 ATATGTGGTAAAGCCGAATGGCTAATGTAAAATAT
24734632 GTAGGCGATG
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
48 48 0.63
49 2 0.03
50 17 0.22
51 2 0.03
52 7 0.09
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTAAAATATATATGAGATATGT
Found at i:24734597 original size:48 final size:48
Alignment explanation
Indices: 24734532--24734634 Score: 179
Period size: 48 Copynumber: 2.1 Consensus size: 48
24734522 AATGTCAAAT
* *
24734532 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAA
*
24734580 CTATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAA
24734628 ATATGTA
1 ATATGTA
24734635 GGCGATGTGC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAA
Found at i:24734826 original size:37 final size:37
Alignment explanation
Indices: 24734770--24734886 Score: 175
Period size: 37 Copynumber: 3.2 Consensus size: 37
24734760 ACATGAAGCT
* *
24734770 TGGAAATATATTCCAGGTAAGACCCGATGACTACGTG
1 TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
24734807 TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
* *
24734844 TGGAGAT-TTTGTCCGGGTAAGACCCGATAACT-CGTG
1 TGGAGATATAT-TCCGGGTAAGACCCGATGACTACGTG
24734880 TGGAGAT
1 TGGAGAT
24734887 TTTGTCTAGC
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
36 13 0.17
37 62 0.83
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (37 bp):
TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
Found at i:24736211 original size:40 final size:40
Alignment explanation
Indices: 24736167--24736463 Score: 463
Period size: 40 Copynumber: 7.5 Consensus size: 40
24736157 TGATATATAA
*
24736167 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
24736207 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
24736247 GGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
24736286 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
24736326 GGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
** * *
24736366 GGGCTAAGTTTCGAAGAGCATTTGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
* ** * * *
24736406 GTGCTAAACCCCGAA-AGCATTCGTGCTGGTGTTATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
24736445 GGGCTAGGTCCCGAAGAGC
1 GGGCTAAGTCCCGAAGAGC
24736464 GATCATGCTG
Statistics
Matches: 238, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
39 71 0.30
40 167 0.70
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCC
Found at i:24736366 original size:119 final size:120
Alignment explanation
Indices: 24736155--24736463 Score: 478
Period size: 119 Copynumber: 2.6 Consensus size: 120
24736145 GAGAATTGAG
** *
24736155 AGTGATATATAAGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
24736220 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* *
24736274 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
* *
24736339 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTTGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
* ** * * * *
24736394 AGTGATATATCCGTGCTAAACCCCGAA-AGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
24736458 AAGAGC
66 AAGAGC
24736464 GATCATGCTG
Statistics
Matches: 173, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
119 133 0.77
120 40 0.23
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (120 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
Found at i:24736444 original size:159 final size:159
Alignment explanation
Indices: 24736167--24736463 Score: 461
Period size: 159 Copynumber: 1.9 Consensus size: 159
24736157 TGATATATAA
24736167 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGT
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGT
* ** *
24736232 GCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCC
66 GCTAGTGATATATCCGGGCTAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
24736297 CGAAGAGCATTCGTGCTAGTGATGTATCC
131 CGAAGAGCATTCGTGCTAGTGATGTATCC
* * ** *
24736326 GGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTTGT
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGT
* * * *
24736391 GCTAGTGATATATCCGTGCTAAACCCCGAA-AGCATTCGTGCTGGTGTTATATCCGGGCTAGGTC
66 GCTAGTGATATATCCGGGCT-AACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTC
24736455 CCGAAGAGC
130 CCGAAGAGC
24736464 GATCATGCTG
Statistics
Matches: 124, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
159 117 0.94
160 7 0.06
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (159 bp):
GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGT
GCTAGTGATATATCCGGGCTAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
CGAAGAGCATTCGTGCTAGTGATGTATCC
Found at i:24740553 original size:48 final size:48
Alignment explanation
Indices: 24740453--24740590 Score: 188
Period size: 48 Copynumber: 2.8 Consensus size: 48
24740443 GTGAACATGC
* * *
24740453 ATATGTGTGATAAAGCCGAATGG-TCAATGTCAAATATATATATGAGATATGT
1 ATATGTG-G-TAAAGCCGAATGGCT-AGTGT-GAA-ATATGTATGAGATATGT
*
24740505 ATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
24740553 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
24740591 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
48 52 0.65
49 2 0.03
50 17 0.21
51 2 0.03
52 7 0.09
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
Found at i:24740781 original size:37 final size:37
Alignment explanation
Indices: 24740726--24740843 Score: 175
Period size: 37 Copynumber: 3.2 Consensus size: 37
24740716 ACATGAAGCT
*
24740726 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
24740763 TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
* * * *
24740800 TGGAGAT-TTTGTCCGGGAAAGACCCGATAACTCCGTG
1 TGGAGATATAT-TCCGGGTAAGACCCGATGACTACGTG
24740837 TGGAGAT
1 TGGAGAT
24740844 TTTGTCTGAG
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
36 2 0.03
37 73 0.97
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
Found at i:24752593 original size:577 final size:576
Alignment explanation
Indices: 24751500--24752626 Score: 2074
Period size: 577 Copynumber: 2.0 Consensus size: 576
24751490 ACTATGCGAC
*
24751500 AATGTATATTAAATTCGTTGGTAAGATAAAAATATGAAAGTTGATGGTGACTAAATTATGATTTG
1 AATGTATATTAAATTCATTGGTAAGATAAAAATATGAAAGTTGATGGTGACTAAATTATGATTTG
* * *
24751565 GTAAATGTTTATATCTAATGTTAAAGCATTGGATGAATGGACTTAGTAGTTAACTCACCTCAAGG
66 GCAAATGTTTATATCTAATGGTAAAGCATTGGATGAATGAACTTAGTAGTTAACTCACCTCAAGG
* * *
24751630 TATATGTATAGTAGATGGATTATATGTAAGAGTAATTCCTTTTTTAGGCAAATTTAGATGACCGA
131 TATATGTATAATAGATAGATTATATGTAAGAGTAATTCCATTTTTAGGCAAATTTAGATGACCGA
*
24751695 GTGGGTGATAAATAGATTTGTGGTAACTGAAATTTTGGCATGTGAAATGTGTATATTTTAAATCT
196 GTGGGTGATAAATAGATTTGTGGTAACCGAAATTTTGGCATGTGAAATGTGTATATTTTAAATCT
24751760 TTACTCGTGAGTTAAATGTTTAACCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAAG
261 TTACTCGTGAGTTAAATGTTTAACCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAAG
*
24751825 TTTAGTAAATTTATTATTGACGGTCGGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAACA
326 TTTAGTAAATTTATTATTGACGGTCAGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAACA
* * *
24751890 TTTATTTGTTTACTGAAATATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGCTGAATAA
391 TTTATTTGTTTACTAAAACATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGCTAAATAA
*
24751955 TAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTTGTAATATATCTTAAAAT
456 TAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTTGTAATACATCTTAAAAT
24752020 GCTTGATGTCTGTTAGATATCCAAATTTTATACATATTTGAAATATACTGTGCAAT
521 GCTTGATGTCTGTTAGATATCCAAATTTTATACATATTTGAAATATACTGTGCAAT
*
24752076 AATGTATATTAAATTCATTGGTAAGATAAAGATATGAAAGTTGATGGTGACTAAATTATGATTTG
1 AATGTATATTAAATTCATTGGTAAGATAAAAATATGAAAGTTGATGGTGACTAAATTATGATTTG
* *
24752141 GCAAATGTTTATATCTAATGGTAATGCATTGGATGAATGAACTTAGTAGTTAACTCACCTGAAGG
66 GCAAATGTTTATATCTAATGGTAAAGCATTGGATGAATGAACTTAGTAGTTAACTCACCTCAAGG
*
24752206 TATATGTGTAATAGATAGATTATATGTAAGAGTAATTCCATTTTTAGGCAAAGTTTAGATGACCG
131 TATATGTATAATAGATAGATTATATGTAAGAGTAATTCCATTTTTAGGCAAA-TTTAGATGACCG
24752271 AGTGGGTGATAAATAGATTTGTGGTAACCGAAATTTTGGCATGTGAAATGTGTATATTTTAAATC
195 AGTGGGTGATAAATAGATTTGTGGTAACCGAAATTTTGGCATGTGAAATGTGTATATTTTAAATC
*
24752336 TTTACTCGTGAGTTAAATGTTTAATCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAA
260 TTTACTCGTGAGTTAAATGTTTAACCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAA
24752401 GTTTAGTAAATTTATTATTGACGGTCAGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAAC
325 GTTTAGTAAATTTATTATTGACGGTCAGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAAC
*
24752466 ATTTATTTGTTTACTAAAACATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGTTAAATA
390 ATTTATTTGTTTACTAAAACATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGCTAAATA
24752531 ATAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTTGTAATACATCTTAAAA
455 ATAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTTGTAATACATCTTAAAA
24752596 TGCTTGATGTCTGTTAGATATCCAAATTTTA
520 TGCTTGATGTCTGTTAGATATCCAAATTTTA
24752627 ATTCGTATTT
Statistics
Matches: 531, Mismatches: 19, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
576 171 0.32
577 360 0.68
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (576 bp):
AATGTATATTAAATTCATTGGTAAGATAAAAATATGAAAGTTGATGGTGACTAAATTATGATTTG
GCAAATGTTTATATCTAATGGTAAAGCATTGGATGAATGAACTTAGTAGTTAACTCACCTCAAGG
TATATGTATAATAGATAGATTATATGTAAGAGTAATTCCATTTTTAGGCAAATTTAGATGACCGA
GTGGGTGATAAATAGATTTGTGGTAACCGAAATTTTGGCATGTGAAATGTGTATATTTTAAATCT
TTACTCGTGAGTTAAATGTTTAACCATAAATAATGATTGAGAATGATTTTAGTTCGTGAGTCAAG
TTTAGTAAATTTATTATTGACGGTCAGTTATAATTCTTGTTTAAATGGTTAAAATGTATATAACA
TTTATTTGTTTACTAAAACATATTTGATTAATTGTGAGAATATGGTTACCGTGTATGCTAAATAA
TAAAATGCCATGAGTTAGATTCTATTTCATTTATTTTATACATATTTTGTAATACATCTTAAAAT
GCTTGATGTCTGTTAGATATCCAAATTTTATACATATTTGAAATATACTGTGCAAT
Found at i:24760042 original size:40 final size:40
Alignment explanation
Indices: 24759989--24760179 Score: 198
Period size: 39 Copynumber: 4.8 Consensus size: 40
24759979 TGTTGAGATG
*
24759989 TGTGATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-
1 TGTGA-AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* *
24760028 TGAAT-AAATCCGGGCTAAG-CCTGAAGGCAATTGTGCGAGT
1 TG--TGAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* *
24760068 TGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGT
1 TGTGAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* *
24760107 TGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT
1 TGTGAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* * *
24760147 TACT-ATAA-CCGGGCTATGTCCCGAAGGCTTTTG
1 T-GTGA-AATCCGGGCTAAGTCCCGAAGGCATTTG
24760180 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 12, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 71 0.54
40 57 0.43
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
TGTGAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
Found at i:24760134 original size:79 final size:78
Alignment explanation
Indices: 24759989--24760174 Score: 225
Period size: 79 Copynumber: 2.4 Consensus size: 78
24759979 TGTTGAGATG
* * *
24759989 TGTGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAATAAATCCGGGCTAAGCCTGAAG
1 TGTGATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTG-ATAAATCCGGGCTAAGCCCGAAG
24760054 GCAATTGTGCGAGT
65 GCAATTGTGCGAGT
* * *
24760068 TGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG-TGATATCCGGGTTAAGTCCCGA
1 TGTGATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAG-TGAT-AAATCCGGGCTAAG-CCCGA
*
24760131 AGGCATTTGTGCGAGT
63 AGGCAATTGTGCGAGT
* *
24760147 TACT-ATAACCGGGCTATGTCCCGAAGGC
1 T-GTGATAACCGGGCTAAGTCCCGAAGGC
24760175 TTTTGAACGA
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 30 0.33
79 51 0.55
80 10 0.11
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (78 bp):
TGTGATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTGATAAATCCGGGCTAAGCCCGAAGG
CAATTGTGCGAGT
Found at i:24760201 original size:79 final size:77
Alignment explanation
Indices: 24759991--24760202 Score: 223
Period size: 79 Copynumber: 2.7 Consensus size: 77
24759981 TTGAGATGTG
* * * *
24759991 TGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAATAAATCCGGGCTAAGCCTGAAGGC
1 TGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTG--TATATCCGGGTTAAGCCCGAAGGC
*
24760056 AATTGTGCGAGTTG
64 AATTGTGCGAGTTC
* *
24760070 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGG
1 TGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGT-ATATCCGGGTTAAG-CCCGAAGG
*
24760134 CATTTGTGCGAGTTAC
63 CAATTGTGCGAGTT-C
* * **
24760150 T-ATAACCGGGCTATGTCCCGAAGGCTTTTGAACGAGTAGCTATATCC-GGTTAA
1 TGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-G-TATATCCGGGTTAA
24760203 ACTTCGAAGG
Statistics
Matches: 112, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
77 1 0.01
78 30 0.27
79 56 0.50
80 24 0.21
81 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (77 bp):
TGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGTATATCCGGGTTAAGCCCGAAGGCAA
TTGTGCGAGTTC
Found at i:24762107 original size:43 final size:43
Alignment explanation
Indices: 24762057--24762143 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
24762047 ATTTGTGTTT
**
24762057 TCGATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATGTGGCTAC-ATGTAAGACCAC-GTCTGGGAC-GTTGGCA
24762100 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCA
24762143 T
1 T
24762144 TGTACGTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 36 0.92
44 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (43 bp):
TCGATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:24765642 original size:25 final size:25
Alignment explanation
Indices: 24765614--24765683 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
24765604 CTCTTTTAAT
*
24765614 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
24765639 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
24765664 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
24765684 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:24765768 original size:5 final size:5
Alignment explanation
Indices: 24765738--24765791 Score: 53
Period size: 5 Copynumber: 11.4 Consensus size: 5
24765728 ACATCATGTG
* *
24765738 CATAT CATA- CATAT CATGT GCATAT CATAT CAAAT CATAT -ATAT -ATAT
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT CATAT CATAT
24765786 -ATAT CA
1 CATAT CA
24765792 AAATATCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
4 16 0.38
5 22 0.52
6 4 0.10
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.37
Consensus pattern (5 bp):
CATAT
Done.