Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 86 of 425
Found at i:24765850 original size:25 final size:25
Alignment explanation
Indices: 24765822--24765869 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
24765812 ATAATTAAAC
* *
24765822 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
24765847 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
24765870 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:24768839 original size:40 final size:40
Alignment explanation
Indices: 24768780--24768983 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
24768770 TGAATGATAC
* * *
24768780 CCGGGCTAAGTCCCGAAGGCAATTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG-TTATAT
*
24768820 CCGGGCTAAGACCCAAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
*
24768860 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
* *
24768900 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
* * ** *
24768940 CCGGGTTAAGACCCGAAGGCAATGGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
24768980 CCGG
1 CCGG
24768984 TTAAATTCCG
Statistics
Matches: 143, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
39 5 0.03
40 132 0.92
41 6 0.04
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
Found at i:24768913 original size:80 final size:80
Alignment explanation
Indices: 24768776--24768983 Score: 301
Period size: 80 Copynumber: 2.6 Consensus size: 80
24768766 CATTTGAATG
* *
24768776 ATACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG-TGATTATATCCGGGCTAAGACCCAAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTG-TTATATCCGGGCTAAGACCCAAAGGC
*
24768840 ATTCGTGCGAGTTGTT
65 ATTCGTGCGAGTTGCT
* * * *
24768856 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCA
24768921 TTCGTGCGAGTTGCT
66 TTCGTGCGAGTTGCT
* * * *
24768936 ATACCCGGGTTAAGACCCGAAGGCAATGGTGCTTGTGGTTATATCCGG
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGG
24768984 TTAAATTCCG
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
80 111 0.98
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGGGCTAAGACCCAAAGGCA
TTCGTGCGAGTTGCT
Found at i:24776116 original size:2 final size:2
Alignment explanation
Indices: 24776109--24776138 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
24776099 TCGGCTCTTG
24776109 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24776139 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24777029 original size:39 final size:40
Alignment explanation
Indices: 24776855--24777053 Score: 226
Period size: 40 Copynumber: 5.0 Consensus size: 40
24776845 AATGATACCC
* * *
24776855 GGCTAAGTCCCGAAGGCAATT-ATGCTAG-TGATTATATCCG
1 GGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATATCCG
* *
24776895 GGCTAAGACCCGAAGGTATTCGTGCGAGTTGTTATATCTG
1 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
* *
24776935 GGCTAAGACCCGAATGCATTTGTGCGAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
*
24776975 GGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TATACCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
* * * ** *
24777014 GGTTAAGACCTGAAGGCAAT-GTGCTTGTGGTTATATCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
24777053 G
1 G
24777054 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
38 7 0.05
39 35 0.26
40 93 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
Found at i:24779032 original size:28 final size:28
Alignment explanation
Indices: 24779000--24779098 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
24778990 GACAAGATTG
*
24779000 GCACTAAGTGTGCG-GTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-AATTATACA
* *
24779028 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
24779056 GCACTAAGTGTGCGAGTTGAATACATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
24779085 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
24779099 GATTCACTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 40 0.63
29 23 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:24784091 original size:28 final size:29
Alignment explanation
Indices: 24784024--24784124 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 29
24784014 ATAGTGAATC
*
24784024 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
24784053 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * *
24784081 CGCACACTTAGTGCTGTACAATTTTAAACT
1 CGCACACTTAGTGCTATATAA-TTCAAACT
24784111 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24784125 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.35
29 20 0.31
30 20 0.31
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:24786654 original size:43 final size:43
Alignment explanation
Indices: 24786516--24786688 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 43
24786506 ACATAGGATT
* * **
24786516 TCGATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTATCA
1 TCGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
* * * * * * *
24786559 TCGAT-TTGAGATTTACGTGTAAGACCATGTCTTGGACATCGACA
1 TCGATATT-TGATTT-CATGTAAGACCACGTCTGGGACGTTGGCA
**
24786603 TCG-TATTTGATTTCATGTAAGACCTTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTTCATGTAAGACCACGTCTGGGAC-GTTGGCA
*
24786645 TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
24786688 T
1 T
24786689 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
42 27 0.25
43 51 0.48
44 28 0.26
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:24788398 original size:15 final size:15
Alignment explanation
Indices: 24788373--24788417 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
24788363 ACATATGCTC
24788373 TTCTCTTTTTTTTCTT
1 TTCT-TTTTTTTTCTT
24788389 TTCTTTTTTTTTCTT
1 TTCTTTTTTTTTCTT
*
24788404 TATCTTCTTTTTTC
1 T-TCTTTTTTTTTC
24788418 CACGAGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 12 0.44
16 15 0.56
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (15 bp):
TTCTTTTTTTTTCTT
Found at i:24788417 original size:16 final size:14
Alignment explanation
Indices: 24788371--24788417 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 14
24788361 GTACATATGC
*
24788371 TCTTCTCTTTTTTT
1 TCTTTTCTTTTTTT
24788385 TCTTTTCTTTTTTTT
1 TCTTTTC-TTTTTTT
24788400 TCTTTATCTTCTTTTT
1 TCTTT-TCTT-TTTTT
24788416 TC
1 TC
24788418 CACGAGTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 6 0.21
15 14 0.48
16 9 0.31
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:24793619 original size:2 final size:2
Alignment explanation
Indices: 24793612--24793637 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24793602 CGGTTATGTG
24793612 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
24793638 CATAAGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24794173 original size:27 final size:27
Alignment explanation
Indices: 24794116--24794212 Score: 167
Period size: 27 Copynumber: 3.6 Consensus size: 27
24794106 AAATTTGTAC
24794116 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
* *
24794144 AGCAGTAAGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
24794171 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
24794198 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
24794213 GACTCACTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 49 0.75
28 16 0.25
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATAT
Found at i:24794224 original size:54 final size:55
Alignment explanation
Indices: 24794116--24794224 Score: 168
Period size: 54 Copynumber: 2.0 Consensus size: 55
24794106 AAATTTGTAC
* * *
24794116 AGCACTAAGTGTGCGAGTTTGATTATATAGCAGTAAGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTCACTATAT
24794171 AGCACTAAGTGTGCGAG-TTGATTATATAGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-CTCACTATAT
24794225 GCTTTTGCAT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
53 1 0.02
54 32 0.64
55 17 0.34
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTCACTATAT
Found at i:24802141 original size:27 final size:27
Alignment explanation
Indices: 24802084--24802179 Score: 174
Period size: 27 Copynumber: 3.5 Consensus size: 27
24802074 AAATTTGTAC
24802084 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
*
24802112 AGCACTAAGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
24802139 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
24802166 AGCACTAAGTGTGC
1 AGCACTAAGTGTGC
24802180 AGACTCACTA
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 49 0.74
28 17 0.26
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATAT
Found at i:24802192 original size:54 final size:55
Alignment explanation
Indices: 24802084--24802192 Score: 177
Period size: 54 Copynumber: 2.0 Consensus size: 55
24802074 AAATTTGTAC
* *
24802084 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTCACTATAT
24802139 AGCACTAAGTGTGCGAG-TTGATTATATAGCACTAAGTGTGC-AGACTCACTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-CTCACTATAT
24802193 GCTTTTGCAT
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
53 2 0.04
54 32 0.63
55 17 0.33
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTCACTATAT
Found at i:24809930 original size:28 final size:28
Alignment explanation
Indices: 24809889--24809952 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
24809879 TTCCTCGCTA
*
24809889 TGCAAAATTCTTAAAAGAATTGTACATT
1 TGCAAAATTATTAAAAGAATTGTACATT
*
24809917 TGCAAAATTATTAAAAGAATTGTGCATT
1 TGCAAAATTATTAAAAGAATTGTACATT
24809945 TGCAAAAT
1 TGCAAAAT
24809953 GAAGCTCTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34
Consensus pattern (28 bp):
TGCAAAATTATTAAAAGAATTGTACATT
Found at i:24812690 original size:26 final size:26
Alignment explanation
Indices: 24812661--24812713 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
24812651 ATTAATTTCA
24812661 TGCTCAACTAAAAACCTTATTTAGCC
1 TGCTCAACTAAAAACCTTATTTAGCC
24812687 TGCTCAACTAAAAACCTTATTTAGCC
1 TGCTCAACTAAAAACCTTATTTAGCC
24812713 T
1 T
24812714 TAGTCCGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (26 bp):
TGCTCAACTAAAAACCTTATTTAGCC
Found at i:24814910 original size:15 final size:16
Alignment explanation
Indices: 24814890--24814923 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
24814880 GTTTTAATTT
24814890 TATTAT-TTTAACATA
1 TATTATATTTAACATA
24814905 TATTATAATTTAACATA
1 TATTAT-ATTTAACATA
24814922 TA
1 TA
24814924 AAATACTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
17 11 0.65
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTATATTTAACATA
Found at i:24815890 original size:29 final size:31
Alignment explanation
Indices: 24815845--24815902 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
24815835 ACAAACTTGA
*
24815845 AATTTAGTGCTTGTATTTTT-AT-TTTTAGG
1 AATTTAGTGCTTCTATTTTTCATATTTTAGG
24815874 AATTTAGT-CTCTCTATTTTTCATATTTTA
1 AATTTAGTGCT-TCTATTTTTCATATTTTA
24815903 AAATTTAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 2 0.08
29 16 0.64
30 2 0.08
31 5 0.20
ACGTcount: A:0.22, C:0.09, G:0.10, T:0.59
Consensus pattern (31 bp):
AATTTAGTGCTTCTATTTTTCATATTTTAGG
Found at i:24818041 original size:25 final size:23
Alignment explanation
Indices: 24818005--24818060 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
24817995 TTTACCCTAC
24818005 TTTTA-TATTATATATTGAAAAATTA
1 TTTTATTA-TATATATT--AAAATTA
*
24818030 TTTTATTATATATATTAATATTA
1 TTTTATTATATATATTAAAATTA
24818053 -TTTATTAT
1 TTTTATTAT
24818061 GTATTGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
25 13 0.45
26 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTATTATATATATTAAAATTA
Found at i:24818329 original size:32 final size:27
Alignment explanation
Indices: 24818304--24818355 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
24818294 TATGTATATC
24818304 ATATATTA-TCTATTATATTATTTATGT
1 ATATATTATTC-ATTATATTATTTATGT
*
24818331 TTATATTATTCATTATATTATTTAT
1 ATATATTATTCATTATATTATTTAT
24818356 AATTTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (27 bp):
ATATATTATTCATTATATTATTTATGT
Found at i:24830757 original size:210 final size:209
Alignment explanation
Indices: 24830391--24830984 Score: 713
Period size: 210 Copynumber: 2.8 Consensus size: 209
24830381 TAAGCCGCAG
**
24830391 CATAGCAGATCTCAAGTTCAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTA-GCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
* * * *
24830456 TGTATTCGGCGGGGAGCATATCAAATATATAGCTAATTTGGCTTTCACGTGTTTATGATGAAGCA
65 TGTATTCGGCAGGGAGCAAATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTATGATGAAGCA
* * * * *
24830521 AATCTAAGATGATTTGTTACCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTT
130 AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTC
*
24830586 AATGGAAG-GCAGACA
195 AATAG-AGTGCAGACA
24830601 CATAGCAGATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
1 CATAGCAGATCTCACCTTCAGATGTTTA-GCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
** * * *
24830666 TGTATTCGGCAGGGAATAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
65 TGTATTCGGCAGGGAGCAAATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTATGATGAAGCA
* * *
24830731 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCAAAGTCTAGCATCTCTACTTC
130 AATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTC
*
24830796 AATAGAGTGCAGATA
195 AATAGAGTGCAGACA
* * * **
24830811 CATAGCAGATCTGACCTTCAGACGATTAGACTGAAATAAGATCCAAGA-G---GAT-TTGGCATC
1 CATAGCAGATCTCACCTTCAGATGTTTAG-CTG-AAGCAGATCCAAGATGACAGATCTT---ATC
* * * * * * *
24830871 -CT-TGTGCTT--ACAAGGAGCAAATCAAAGACATAGCTGATTTAGCTTTCACATGCTTATGATG
61 TCTCTGT-ATTCGGCAGGGAGCAAATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTATGATG
* * *
24830932 AAGCAAATCTAAGGTGATTTGTCATCCCTATATTGTCAGAGAACAAATCGAAG
125 AAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAG
24830985 AAGCAAATTT
Statistics
Matches: 334, Mismatches: 43, Indels: 18
0.85 0.11 0.05
Matches are distributed among these distances:
206 91 0.27
207 6 0.02
208 4 0.01
209 6 0.02
210 215 0.64
211 12 0.04
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (209 bp):
CATAGCAGATCTCACCTTCAGATGTTTAGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
GTATTCGGCAGGGAGCAAATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTATGATGAAGCAA
ATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCA
ATAGAGTGCAGACA
Found at i:24832615 original size:25 final size:23
Alignment explanation
Indices: 24832579--24832634 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
24832569 TTTACCCTAC
24832579 TTTTA-TATTATATATTGAAAAATTA
1 TTTTATTA-TATATATT--AAAATTA
*
24832604 TTTTATTATATATATTAATATTA
1 TTTTATTATATATATTAAAATTA
24832627 -TTTATTAT
1 TTTTATTAT
24832635 CTATTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.28
23 6 0.21
25 13 0.45
26 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTATTATATATATTAAAATTA
Found at i:24832780 original size:22 final size:23
Alignment explanation
Indices: 24832725--24832784 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 23
24832715 ATTAACTATT
*
24832725 TATATA-TATTGT-TTTTACATA
1 TATATACTATTATATTTTACATA
* *
24832746 TATATACTCTTATTATTTTATAT-
1 TATATACTATTA-TATTTTACATA
24832769 TATAT-CTATTATATTT
1 TATATACTATTATATTT
24832785 CTTATTTCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 11 0.34
22 8 0.25
23 6 0.19
24 7 0.22
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.60
Consensus pattern (23 bp):
TATATACTATTATATTTTACATA
Found at i:24832899 original size:12 final size:12
Alignment explanation
Indices: 24832882--24832931 Score: 64
Period size: 12 Copynumber: 4.0 Consensus size: 12
24832872 ATGTATATCA
*
24832882 TATATTATCTAT
1 TATATTATTTAT
24832894 TATATTATTTATGT
1 TATATTATTTA--T
*
24832908 TATGTTATTTAT
1 TATATTATTTAT
24832920 TATATTATTTAT
1 TATATTATTTAT
24832932 AATTTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 22 0.67
14 11 0.33
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (12 bp):
TATATTATTTAT
Found at i:24847333 original size:40 final size:39
Alignment explanation
Indices: 24847131--24847353 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 39
24847121 CGAATGATGT
* * *
24847131 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AAC
**
24847171 CGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA-C
* **
24847211 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTT
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-AC
* *
24847251 CGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA-C
*
24847290 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAC
* *
24847330 CGGGCTATGTCCCAAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
24847354 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
39 33 0.21
40 113 0.72
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
Found at i:24847376 original size:79 final size:79
Alignment explanation
Indices: 24847140--24847386 Score: 184
Period size: 79 Copynumber: 3.1 Consensus size: 79
24847130 TCGGGCTAAG
* * * * * * **
24847140 TCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCCGAACTAAGATCCGAAGGCATTTGTGCGAGTT
1 TCCCGAAGGCATTTGTGC-GAGTTACTAATA-CCGAGCTAAG-CCCAAAGGCATTGGAACGAGTT
*
24847203 ACTAAATCCG-GACTAAGA
63 ACTAAATCCGAG-TTAA-A
** * **
24847221 T-CCGAAGGCATTTGTGCGAGTTACTAATTTCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACT
1 TCCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCAAAGGCATTGGAACGAGTTACT
* *
24847285 AAATCCGGGTTAAG
66 AAATCCGAGTTAAA
* * *
24847299 TCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TA
1 TCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCAAAGGCATTGGAACGAGTTA
*
24847362 GCTATATCC-AGTTAAA
64 -CTAAATCCGAGTTAAA
*
24847378 TTCCGAAGG
1 TCCCGAAGG
24847387 TACGTGATTC
Statistics
Matches: 138, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
78 3 0.02
79 79 0.57
80 46 0.33
81 10 0.07
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (79 bp):
TCCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCAAAGGCATTGGAACGAGTTACT
AAATCCGAGTTAAA
Found at i:24856045 original size:30 final size:30
Alignment explanation
Indices: 24855990--24856211 Score: 244
Period size: 29 Copynumber: 7.5 Consensus size: 30
24855980 ATAGTGAATC
24855990 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
24856019 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
24856049 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
24856078 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * *
24856106 CGCACACTTAGTGCTGTACAATTTTAAACCCGCT
1 CGCACACTTAGTGCTATATAATTTT----CAGCT
*
24856140 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
24856168 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
24856198 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24856212 CAATCTTGTC
Statistics
Matches: 166, Mismatches: 13, Indels: 27
0.81 0.06 0.13
Matches are distributed among these distances:
27 3 0.02
28 43 0.26
29 48 0.29
30 47 0.28
31 3 0.02
34 21 0.13
35 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:24856082 original size:59 final size:58
Alignment explanation
Indices: 24855990--24856211 Score: 279
Period size: 62 Copynumber: 3.8 Consensus size: 58
24855980 ATAGTGAATC
* *
24855990 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATACAATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
24856049 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATACAATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* *
24856106 CGCACACTTAGTGCTGTACAATTTTAAACCCGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATACAATTTT----CAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * *
24856168 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATACAATTTTCAGCTCGCACACTTAGTGC
24856212 CAATCTTGTC
Statistics
Matches: 149, Mismatches: 8, Indels: 13
0.88 0.05 0.08
Matches are distributed among these distances:
56 2 0.01
57 20 0.13
58 20 0.13
59 50 0.34
62 57 0.38
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (58 bp):
CGCACACTTAGTGCTATACAATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:24856147 original size:34 final size:34
Alignment explanation
Indices: 24856104--24856200 Score: 125
Period size: 34 Copynumber: 3.0 Consensus size: 34
24856094 TATAATCAAA
24856104 CTCGCACACTTAGTGCTGTACAATTTTAAACCCG
1 CTCGCACACTTAGTGCTGTACAATTTTAAACCCG
* * *
24856138 CTCGCACACTTAGTGCTATATAA--TCAAA----
1 CTCGCACACTTAGTGCTGTACAATTTTAAACCCG
24856166 CTCGCACACTTAGTGCTGTACAATTTTAAACCCG
1 CTCGCACACTTAGTGCTGTACAATTTTAAACCCG
24856200 C
1 C
24856201 ACACTTAGTG
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
28 21 0.41
30 4 0.08
32 4 0.08
34 22 0.43
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (34 bp):
CTCGCACACTTAGTGCTGTACAATTTTAAACCCG
Found at i:24863980 original size:30 final size:30
Alignment explanation
Indices: 24863925--24864084 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
24863915 ATAGTGAATC
24863925 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
24863954 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
24863984 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
24864013 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
24864041 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
24864071 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24864085 ACACACTTAG
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:24864017 original size:59 final size:57
Alignment explanation
Indices: 24863925--24864084 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
24863915 ATAGTGAATC
*
24863925 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
24863984 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
24864041 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
24864085 ACACACTTAG
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:24864091 original size:13 final size:13
Alignment explanation
Indices: 24864073--24864097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24864063 TTTAAACCCG
24864073 CACACTTAGTGCA
1 CACACTTAGTGCA
24864086 CACACTTAGTGC
1 CACACTTAGTGC
24864098 CAATCTTGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (13 bp):
CACACTTAGTGCA
Found at i:24866376 original size:40 final size:39
Alignment explanation
Indices: 24866332--24866511 Score: 132
Period size: 39 Copynumber: 4.6 Consensus size: 39
24866322 CTAAGTCCCG
24866332 AAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCA
1 AAGGCATTTGTGC-AAGTGACTA-ATCCGGACTAAGATCCA
* * * *
24866372 AAGGCATTTGTGCGAGTTACTAATTCGGACTAAGATCCG
1 AAGGCATTTGTGCAAGTGACTAATCCGGACTAAGATCCA
* * * * * *
24866411 AAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAG-CCCG
1 AAGGCATTTGTGCAAGTGACTAA-TCCGGACTAAGATCCA
* * * ** *
24866450 AAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCG
1 AAGGCATTTGTGCAAGTGACT-AATCCGGACTAAGAT-CCA
* *
24866490 AAGGCATTTGTGCGAGTTACTA
1 AAGGCATTTGTGCAAGTGACTA
24866512 TAACCGGGCT
Statistics
Matches: 125, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
39 71 0.57
40 47 0.38
41 7 0.06
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (39 bp):
AAGGCATTTGTGCAAGTGACTAATCCGGACTAAGATCCA
Found at i:24866503 original size:79 final size:79
Alignment explanation
Indices: 24866316--24866537 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 79
24866306 TCGAATGATG
* * * * *
24866316 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
*
24866380 TGTGCGAGTTACTAA
65 GGTGCGAGTTACTAA
* * *
24866395 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTTCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCAT
24866457 TGGTGCGAGTTACTAAA
64 TGGTGCGAGTTACT-AA
* * * *
24866474 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
24866538 TGAACGAGTA
Statistics
Matches: 121, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 24 0.20
79 76 0.63
80 21 0.17
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:24866519 original size:40 final size:39
Alignment explanation
Indices: 24866316--24866539 Score: 258
Period size: 40 Copynumber: 5.7 Consensus size: 39
24866306 TCGAATGATG
* *
24866316 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
24866356 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
24866395 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
24866434 TTTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
24866474 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
24866514 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24866540 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 71 0.44
40 84 0.52
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:24866561 original size:79 final size:78
Alignment explanation
Indices: 24866323--24866562 Score: 249
Period size: 79 Copynumber: 3.0 Consensus size: 78
24866313 ATGTCCGGGC
* * * *
24866323 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCAAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
24866386 AGTTACTAATTCGGAC
64 AGTTACTAATTCGG-T
* *
24866402 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTTCGGGCTAAG-CCCGAAGGCATTGGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
24866464 AGTTACTAAATCCGGGT
64 AGTTACT-AATTC-GGT
* * **
24866481 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
24866546 -TAGCTATATTCGGT
66 TTA-CTA-ATTCGGT
24866560 TAA
1 TAA
24866563 ATTTCGAAGG
Statistics
Matches: 135, Mismatches: 15, Indels: 22
0.78 0.09 0.13
Matches are distributed among these distances:
78 24 0.18
79 78 0.58
80 33 0.24
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTAATTCGGT
Found at i:24874577 original size:40 final size:40
Alignment explanation
Indices: 24874396--24874613 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 40
24874386 TCGAATGATG
* *
24874396 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT--A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
24874434 TCCGGACTAA-T-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24874472 TCCGGACT-AG--CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24874509 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24874548 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24874589 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24874614 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 11, Indels: 14
0.87 0.06 0.08
Matches are distributed among these distances:
36 14 0.09
37 42 0.26
38 20 0.12
39 35 0.22
40 48 0.30
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24874635 original size:79 final size:79
Alignment explanation
Indices: 24874396--24874646 Score: 216
Period size: 79 Copynumber: 3.3 Consensus size: 79
24874386 TCGAATGATG
* * * * * * *
24874396 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT-CCGGACTAA-TCCGAAGGCATTT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-GAGTTACTAATACCGGGCTAAGCCCGAAGGCATTG
**
24874457 GTGCGAGTTACTAAA
65 GAACGAGTTACTAAA
** * *
24874472 TCCGGACT--A-GCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGG
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
**
24874534 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
* *
24874548 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
* *
24874612 TGAACGAG-TAGCTATA
64 GGAACGAGTTA-CTAAA
*
24874628 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
24874647 TACGTGATTC
Statistics
Matches: 145, Mismatches: 20, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
73 14 0.10
74 9 0.06
75 8 0.06
76 39 0.27
78 2 0.01
79 49 0.34
80 24 0.17
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
AACGAGTTACTAAA
Found at i:24877613 original size:31 final size:31
Alignment explanation
Indices: 24877564--24877649 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
24877554 TCAATCTCAG
24877564 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
24877594 CATATCACTGAGCCAAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
24877625 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
24877650 TGTAACAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:24877887 original size:24 final size:23
Alignment explanation
Indices: 24877842--24877937 Score: 75
Period size: 24 Copynumber: 4.0 Consensus size: 23
24877832 ACTTTATCAT
** *
24877842 ATAACTGGAGGCCTAGCTCTTTTA
1 ATAACTGG-GGCAAAGCCCTTTTA
*
24877866 ATAACTGGGGCAAAAGCCCTTTTTG
1 ATAACTGGGGC-AAAGCCC-TTTTA
* *
24877891 ATAAATTGGGGCAAAGCCCTTTTCT
1 AT-AACTGGGGCAAAGCCCTTTT-A
* *
24877916 GTAACTGGGGCATAGCCCTTTT
1 ATAACTGGGGCAAAGCCCTTTT
24877938 GCACTTCCTC
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
23 3 0.05
24 34 0.58
25 14 0.24
26 8 0.14
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTA
Found at i:24877906 original size:25 final size:24
Alignment explanation
Indices: 24877867--24877937 Score: 90
Period size: 24 Copynumber: 2.9 Consensus size: 24
24877857 GCTCTTTTAA
24877867 TAACTGGGGCAAAAGCCCTTTT-TG
1 TAACTGGGGC-AAAGCCCTTTTCTG
*
24877891 ATAAATTGGGGCAAAGCCCTTTTCTG
1 -T-AACTGGGGCAAAGCCCTTTTCTG
*
24877917 TAACTGGGGCATAGCCCTTTT
1 TAACTGGGGCAAAGCCCTTTT
24877938 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 18 0.44
25 13 0.32
26 10 0.24
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (24 bp):
TAACTGGGGCAAAGCCCTTTTCTG
Found at i:24878007 original size:20 final size:20
Alignment explanation
Indices: 24877984--24878028 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
24877974 TTATGAATAC
24877984 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
24878004 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
24878024 ATCAT
1 ATCAT
24878029 TATATCAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:24889064 original size:39 final size:40
Alignment explanation
Indices: 24888886--24889068 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
24888876 CCGCACCAAG
* * * * * * * *
24888886 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
24888926 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
24888966 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
24889006 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
24889045 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
24889069 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:24896931 original size:39 final size:40
Alignment explanation
Indices: 24896753--24896935 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
24896743 CCGCACCAAG
* * * * * * * *
24896753 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
24896793 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
24896833 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
24896873 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
24896912 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
24896936 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:24901416 original size:38 final size:38
Alignment explanation
Indices: 24901365--24901441 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
24901355 GTCCTTATAT
* *
24901365 GATAATTAGACCATTTGTTAAGTTAGTGGACAAAAATG
1 GATAATTAAACCATTTGTTAAGTTAATGGACAAAAATG
24901403 GATAATTAAACCATTTGTTAAGTTAATGGACAAAAATG
1 GATAATTAAACCATTTGTTAAGTTAATGGACAAAAATG
24901441 G
1 G
24901442 GCATGTTTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (38 bp):
GATAATTAAACCATTTGTTAAGTTAATGGACAAAAATG
Found at i:24902776 original size:41 final size:41
Alignment explanation
Indices: 24902716--24902866 Score: 214
Period size: 41 Copynumber: 3.7 Consensus size: 41
24902706 CCGCAAAAGA
*
24902716 TGAGCAATAGTGGCATTTTTTGTCCAAATGCAGCTAAAGGT
1 TGAGCAATAGTGGCATTTTTTGTCCAAACGCAGCTAAAGGT
* * *
24902757 TGAGCAATAGTGGCGTTTTTTGTTCAAACGCTGCTAAAGGT
1 TGAGCAATAGTGGCATTTTTTGTCCAAACGCAGCTAAAGGT
* * * *
24902798 TGAGCTATAGTGGC-GTTTTTGTTCAAACGCCGCTAAAGGT
1 TGAGCAATAGTGGCATTTTTTGTCCAAACGCAGCTAAAGGT
*
24902838 TGAGCAATAGTGGCATTTTTTATCCAAAC
1 TGAGCAATAGTGGCATTTTTTGTCCAAAC
24902867 ACTACGACTA
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 37 0.38
41 61 0.62
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (41 bp):
TGAGCAATAGTGGCATTTTTTGTCCAAACGCAGCTAAAGGT
Found at i:24902866 original size:81 final size:82
Alignment explanation
Indices: 24902716--24902866 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 82
24902706 CCGCAAAAGA
* * * * *
24902716 TGAGCAATAGTGGCATTTTTTGTCCAAATGCAGCTAAAGGTTGAGCAATAGTGGCGTTTTTTGTT
1 TGAGCAATAGTGGCAGTTTTTGTCCAAACGCAGCTAAAGGTTGAGCAATAGTGGCATTTTTTATC
24902781 CAAACGCTGCTAAAGGT
66 CAAACGCTGCTAAAGGT
* * *
24902798 TGAGCTATAGTGGC-GTTTTTGTTCAAACGCCGCTAAAGGTTGAGCAATAGTGGCATTTTTTATC
1 TGAGCAATAGTGGCAGTTTTTGTCCAAACGCAGCTAAAGGTTGAGCAATAGTGGCATTTTTTATC
24902862 CAAAC
66 CAAAC
24902867 ACTACGACTA
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
81 48 0.79
82 13 0.21
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (82 bp):
TGAGCAATAGTGGCAGTTTTTGTCCAAACGCAGCTAAAGGTTGAGCAATAGTGGCATTTTTTATC
CAAACGCTGCTAAAGGT
Found at i:24903139 original size:17 final size:18
Alignment explanation
Indices: 24903119--24903153 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
24903109 GTTATCTTAT
24903119 TTTTATTTTGA-ATTTGA
1 TTTTATTTTGATATTTGA
24903136 TTTTATTTTGATATTTGA
1 TTTTATTTTGATATTTGA
24903154 AACCGACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (18 bp):
TTTTATTTTGATATTTGA
Found at i:24903328 original size:7 final size:7
Alignment explanation
Indices: 24903316--24903517 Score: 88
Period size: 7 Copynumber: 27.7 Consensus size: 7
24903306 ATGGCTTTCT
24903316 CTAAACC
1 CTAAACC
24903323 CTAAACC
1 CTAAACC
*
24903330 CTTAAATCA
1 C-TAAA-CC
24903339 CTAAACC
1 CTAAACC
*
24903346 CTTAAACT
1 C-TAAACC
*
24903354 ATAAACC
1 CTAAACC
24903361 CTAAACC
1 CTAAACC
* *
24903368 CCAAA-T
1 CTAAACC
*
24903374 CTCAAACT
1 CT-AAACC
*
24903382 CTAAGCC
1 CTAAACC
24903389 CTTAAAACC
1 C-T-AAACC
*
24903398 CTAAACA
1 CTAAACC
* *
24903405 CTGAACA
1 CTAAACC
*
24903412 CT-AGCAC
1 CTAAAC-C
24903419 CTAAACC
1 CTAAACC
*
24903426 CTAACCC
1 CTAAACC
24903433 CTAAACC
1 CTAAACC
24903440 CATAAACC
1 C-TAAACC
* *
24903448 AATAAACTA
1 -CTAAAC-C
24903457 C-AAACC
1 CTAAACC
24903463 CTAAACC
1 CTAAACC
*
24903470 AC-ATACC
1 -CTAAACC
24903477 CTAAACC
1 CTAAACC
*
24903484 CCAAACTC
1 CTAAAC-C
*
24903492 TTAAACC
1 CTAAACC
* *
24903499 ATAAAAC
1 CTAAACC
*
24903506 CTAAAAC
1 CTAAACC
24903513 CTAAA
1 CTAAA
24903518 AAATAAATTT
Statistics
Matches: 148, Mismatches: 31, Indels: 32
0.70 0.15 0.15
Matches are distributed among these distances:
6 5 0.03
7 99 0.67
8 37 0.25
9 7 0.05
ACGTcount: A:0.46, C:0.36, G:0.01, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:24904486 original size:115 final size:115
Alignment explanation
Indices: 24904051--24904540 Score: 466
Period size: 115 Copynumber: 4.3 Consensus size: 115
24904041 AGCTTTGTTT
* * *** * * * *
24904051 TTAGTGGCATTTTGACTAAAACATCGTAAAAGGATAGCCTTTAGTGGCATTTTCACAAAAAACGC
1 TTAGTGGCGTTTTTACTAAAATGCCGCAAAAGGATATCCGTTAGTGGCGTTTTCACAAAAAACGC
* * ** * * * *
24904116 CGCAAATATGTTTTAAGAGC-GTGCAAAACACTG-CAGTTTTTATCTACTTT
66 CACGAATATGTTTTAAGA-CTGTGCAAAACGTTGCCA-TTTCTATCTGCCTA
* * * * * * *
24904166 TTTGCGACATTTTTAGTAAAATGCCGCAAAAGGATATCCGTTAGTGGCATTTT-AGCAAAAAAGG
1 TTAGTGGCGTTTTTACTAAAATGCCGCAAAAGGATATCCGTTAGTGGCGTTTTCA-CAAAAAACG
* * * ** *
24904230 CCACGAATATGTTTTAAGAGC-GTGCAAAACGCTGCCATTTTTATTTATCTG
65 CCACGAATATGTTTTAAGA-CTGTGCAAAACGTTGCCATTTCTATCTGCCTA
** * * * *
24904281 TTAGTTACGTTTTTACTAAAATGCCACAAAAAGATATTCGTTAGTGGCGTTTTCACAAAAAATGC
1 TTAGTGGCGTTTTTACTAAAATGCCGCAAAAGGATATCCGTTAGTGGCGTTTTCACAAAAAACGC
* * *
24904346 CACGAATATGTTTTAAGAGTGTGCAAAACGTTGCCATTTGTATGTGCCTA
66 CACGAATATGTTTTAAGACTGTGCAAAACGTTGCCATTTCTATCTGCCTA
* * *
24904396 TTAGTGGCGTTTTTACTAAAATGCCGCAAAAGGATATCCTTTAGTGGTGTTTTCACATAAAACGC
1 TTAGTGGCGTTTTTACTAAAATGCCGCAAAAGGATATCCGTTAGTGGCGTTTTCACAAAAAACGC
* * * * *
24904461 CACGAAAATGTTTTAAGACTATGCAAAACGTTGCCCTTTCTATCTGCTTT
66 CACGAATATGTTTTAAGACTGTGCAAAACGTTGCCATTTCTATCTGCCTA
** *
24904511 TTAGTGGCACTTTTACTAAAAGGCCGCAAA
1 TTAGTGGCGTTTTTACTAAAATGCCGCAAA
24904541 TATCGATTAT
Statistics
Matches: 315, Mismatches: 56, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
114 1 0.00
115 311 0.99
116 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (115 bp):
TTAGTGGCGTTTTTACTAAAATGCCGCAAAAGGATATCCGTTAGTGGCGTTTTCACAAAAAACGC
CACGAATATGTTTTAAGACTGTGCAAAACGTTGCCATTTCTATCTGCCTA
Found at i:24908309 original size:40 final size:40
Alignment explanation
Indices: 24908185--24908315 Score: 129
Period size: 40 Copynumber: 3.3 Consensus size: 40
24908175 CGTTTGGATA
* * * * *
24908185 AAAAACGCCGCTAAAGATCGAGCACTAGGAGCGCTTCTTG
1 AAAAACGCCGCTATAGATCGAACATTAGCAGCGCTTTTTG
* * ** **
24908225 AAAAACGCCGCTATAGATCGAGCATTAGCGGTTCTTTTCA
1 AAAAACGCCGCTATAGATCGAACATTAGCAGCGCTTTTTG
*
24908265 AAAAACGCCGCTATATATC-AACTATTAGCAGCGCTTTTTG
1 AAAAACGCCGCTATAGATCGAAC-ATTAGCAGCGCTTTTTG
*
24908305 AAAAATGCCGC
1 AAAAACGCCGC
24908316 AAAAAAATTA
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 2 0.03
40 71 0.97
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAACATTAGCAGCGCTTTTTG
Found at i:24908423 original size:40 final size:40
Alignment explanation
Indices: 24908361--24908464 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 40
24908351 AGCTTTAGTG
24908361 GCATTAGCGGCAG-TTTTTGAAAAACACCGCTATAGATCGA
1 GCATTAGCGGC-GCTTTTTGAAAAACACCGCTATAGATCGA
* * *** *
24908401 GCATTAGTGGCGCTTTTAG-AAAATGTCGCTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
*
24908440 CCATTAGCGGCGCTTTTTGAAAAAC
1 GCATTAGCGGCGCTTTTTGAAAAAC
24908465 GCCACAAAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
39 33 0.63
40 19 0.37
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
Found at i:24908560 original size:147 final size:152
Alignment explanation
Indices: 24908222--24908571 Score: 442
Period size: 147 Copynumber: 2.3 Consensus size: 152
24908212 GGAGCGCTTC
** *
24908222 TTGAAAAACGCCGCTATAGATCGAGCATTAGCGGTTCTTTTCAAAAAACGCCGCTATATATCAAC
1 TTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTCAAAAAACGCCGCTATAGATCAAC
* * * *
24908287 TATTAGCAGCGCTTTTTGAAAAATGCCGCAAAAAAATTAAGCACAACGCCGTCGTTTTATGTTGA
66 CATTAGCAGCGCTTTTTGAAAAACGCCACAAAAAAATTAAGCACAACGACG-CG--TTATGTTGA
* *
24908352 GCTTTAGTGGCATTAGCGGCAGTTT
128 GCTTTAGTGGCATTAGAGGCACTTT
* * * * * * *
24908377 TTGAAAAACACCGCTATAGATCGAGCATTAGTGGCGCTTTT-AGAAAATGTCGCTATAGGTCGAC
1 TTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTCAAAAAACGCCGCTATAGATCAAC
*
24908441 CATTAGCGGCGCTTTTTGAAAAACGCCACAAAAAAATTAAGCACAAC-AC-CG-TA-GTTGAGCT
66 CATTAGCAGCGCTTTTTGAAAAACGCCACAAAAAAATTAAGCACAACGACGCGTTATGTTGAGCT
24908502 TTAGTGGC-TTAAGAGGCACTTT
131 TTAGTGGCATT-AGAGGCACTTT
* *
24908524 TTGAAAAACGCCGCTATAGATCGAGCTTTAACGGCGCTTTGTCAAAAA
1 TTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTT-TCAAAAA
24908572 CACCAAAAAA
Statistics
Matches: 170, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
146 2 0.01
147 61 0.36
148 3 0.02
149 4 0.02
151 2 0.01
153 1 0.01
154 60 0.35
155 37 0.22
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (152 bp):
TTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTCAAAAAACGCCGCTATAGATCAAC
CATTAGCAGCGCTTTTTGAAAAACGCCACAAAAAAATTAAGCACAACGACGCGTTATGTTGAGCT
TTAGTGGCATTAGAGGCACTTT
Found at i:24908792 original size:7 final size:7
Alignment explanation
Indices: 24908750--24908937 Score: 87
Period size: 7 Copynumber: 26.4 Consensus size: 7
24908740 TTAATTATCA
*
24908750 TTATAGT
1 TTATGGT
*
24908757 TTAGGGT
1 TTATGGT
24908764 TTATGGT
1 TTATGGT
*
24908771 ATATGGT
1 TTATGGT
*
24908778 ATATGGT
1 TTATGGT
*
24908785 TTAGGGT
1 TTATGGT
*
24908792 TTAAGGT
1 TTATGGT
*
24908799 TTAAGAGT
1 TTATG-GT
24908807 TACTAT--T
1 T--TATGGT
*
24908814 TTAAGGT
1 TTATGGT
*
24908821 TTATGGA
1 TTATGGT
*
24908828 TTACAGGT
1 TTA-TGGT
* *
24908836 TTAGGGA
1 TTATGGT
24908843 TTATGGT
1 TTATGGT
24908850 TTATGGTT
1 TTATGG-T
24908858 TTATGG-
1 TTATGGT
**
24908864 TTGGGGT
1 TTATGGT
* *
24908871 TTAAGGG
1 TTATGGT
*
24908878 TTATGGG
1 TTATGGT
24908885 TTATGGGT
1 TTAT-GGT
24908893 TTA-GGAT
1 TTATGG-T
*
24908900 TTAGGGT
1 TTATGGT
*
24908907 TTATGGG
1 TTATGGT
*
24908914 TTATGTT
1 TTATGGT
*
24908921 TTATGAT
1 TTATGGT
*
24908928 TTAGGGT
1 TTATGGT
24908935 TTA
1 TTA
24908938 GTGGATAGGG
Statistics
Matches: 139, Mismatches: 31, Indels: 22
0.72 0.16 0.11
Matches are distributed among these distances:
5 2 0.01
6 6 0.04
7 107 0.77
8 22 0.16
10 2 0.01
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:24908835 original size:15 final size:14
Alignment explanation
Indices: 24908814--24908855 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
24908804 AGTTACTATT
24908814 TTAAGGTTTATGGA
1 TTAAGGTTTATGGA
*
24908828 TTACAGGTTTAGGGA
1 TTA-AGGTTTATGGA
*
24908843 TTATGGTTTATGG
1 TTAAGGTTTATGG
24908856 TTTTATGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.24, C:0.02, G:0.31, T:0.43
Consensus pattern (14 bp):
TTAAGGTTTATGGA
Found at i:24908913 original size:29 final size:28
Alignment explanation
Indices: 24908756--24908937 Score: 106
Period size: 29 Copynumber: 6.4 Consensus size: 28
24908746 ATCATTATAG
*
24908756 TTTAGGGTTTAT-GGTATATGGTATATGG-
1 TTTAGGGTTTATGGGT-TATGGTTTA-GGA
* * * **
24908784 TTTAGGGTTTAAGGTTTAAGAG-TTACTA
1 TTTAGGGTTTATGGGTTATG-GTTTAGGA
* * *
24908812 TTTTAAGGTTTATGGATTACAGGTTTAGGGA
1 -TTTAGGGTTTATGGGTTA-TGGTTTA-GGA
* * * *
24908843 -TTATGGTTTATGGTTTTATGG-TTGGGG
1 TTTAGGGTTTATGG-GTTATGGTTTAGGA
24908870 TTTAAGGG-TTATGGGTTATGGGTTTAGGA
1 TTT-AGGGTTTATGGGTTAT-GGTTTAGGA
* *
24908899 TTTAGGGTTTATGGGTTATGTTTTATGA
1 TTTAGGGTTTATGGGTTATGGTTTAGGA
24908927 TTTAGGGTTTA
1 TTTAGGGTTTA
24908938 GTGGATAGGG
Statistics
Matches: 119, Mismatches: 22, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
27 6 0.05
28 50 0.42
29 54 0.45
30 8 0.07
31 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.47
Consensus pattern (28 bp):
TTTAGGGTTTATGGGTTATGGTTTAGGA
Found at i:24908959 original size:64 final size:64
Alignment explanation
Indices: 24908832--24908967 Score: 145
Period size: 64 Copynumber: 2.1 Consensus size: 64
24908822 TATGGATTAC
* * * * *
24908832 AGGTTTAGGGATTATGGTTTATGGTTTTATGGTTGGGGTTTAAGGGTTATGGGTTATGGGTTT-
1 AGGTTTAGGGATTATGGGTTATGGTTTTATGGTTAGGGTTTAAGGGATAGGGGTTATGAGTTTA
* *
24908895 AGGATTTAGGGTTTATGGGTTAT-GTTTTATGATTTAGGGTTT-AGTGGATAGGGGTTA-GAAGT
1 AGG-TTTAGGGATTATGGGTTATGGTTTTATG-GTTAGGGTTTAAG-GGATAGGGGTTATG-AGT
24908957 TTA
62 TTA
24908960 AGGTTTAG
1 AGGTTTAG
24908968 AGTAATAAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
63 14 0.23
64 44 0.72
65 3 0.05
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (64 bp):
AGGTTTAGGGATTATGGGTTATGGTTTTATGGTTAGGGTTTAAGGGATAGGGGTTATGAGTTTA
Found at i:24914020 original size:19 final size:19
Alignment explanation
Indices: 24913997--24914043 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
24913987 ATTTAATCTA
*
24913997 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
24914015 AGTTTTAATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
24914035 ATTTTTATT
1 ATTTTTATT
24914044 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:24914023 original size:25 final size:24
Alignment explanation
Indices: 24913995--24914053 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
24913985 ATATTTAATC
24913995 TAATTTTTATTATTTA-TTTTAGTTT
1 TAATTTTTATT-TTTATTTTTA-TTT
*
24914020 TAATTCTATATTTTTATTTTTATTT
1 TAATT-TTTATTTTTATTTTTATTT
*
24914045 TAATATTTA
1 TAATTTTTA
24914054 AGATAACTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 3 0.10
25 16 0.55
26 10 0.34
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (24 bp):
TAATTTTTATTTTTATTTTTATTT
Found at i:24914388 original size:42 final size:43
Alignment explanation
Indices: 24914300--24914489 Score: 211
Period size: 43 Copynumber: 4.4 Consensus size: 43
24914290 TAATTTTTAT
* ** * **
24914300 TAAAGGTCATTTTCTTTAGCAGCGTTTGTGGGAAAAGCGCTAC
1 TAAAGGTCATGTTCTTTAGTGGCGTTTTTGGGAAAAGCGCCGC
* * * *
24914343 TAAAAGTTATGCTCTTTAGTGGCGTTTTT-AGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGTGGCGTTTTTGGGAAAAGCGCCGC
* * * *
24914385 TAAATGTCATGTTCTTTAGTGGCATTTTTGGGGAAAGCGCTGC
1 TAAAGGTCATGTTCTTTAGTGGCGTTTTTGGGAAAAGCGCCGC
* * *
24914428 TACAGGTTATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGTGGCGTTTTTGGGAAAAGCGCCGC
*
24914471 TCAAGGTCATGTTCTTTAG
1 TAAAGGTCATGTTCTTTAG
24914490 CTGCATTTTT
Statistics
Matches: 119, Mismatches: 27, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
42 35 0.29
43 84 0.71
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGTGGCGTTTTTGGGAAAAGCGCCGC
Found at i:24914452 original size:85 final size:85
Alignment explanation
Indices: 24914300--24914499 Score: 249
Period size: 85 Copynumber: 2.3 Consensus size: 85
24914290 TAATTTTTAT
* * * * *
24914300 TAAAGGTCATTTTCTTTAGCAGCGTTTGTGGGAAAAGCGCTACTAAAAGTTATGCTCTTTAGTGG
1 TAAAGGTCATGTTCTTTAG-TGCATTTTTGGGAAAAGCGCTACTAAAAGTTATGCTCTTTAGCGG
24914365 CGTTTTT-AGAAAAGCGCCGC
65 CGTTTTTGAGAAAAGCGCCGC
* * * * * *
24914385 TAAATGTCATGTTCTTTAGTGGCATTTTTGGGGAAAGCGCTGCTACAGGTTATGTTCTTTAGCGG
1 TAAAGGTCATGTTCTTTAGT-GCATTTTTGGGAAAAGCGCTACTAAAAGTTATGCTCTTTAGCGG
*
24914450 CGTTTTTGGGAAAAGCGCCGC
65 CGTTTTTGAGAAAAGCGCCGC
*
24914471 TCAAGGTCATGTTCTTTAGCTGCATTTTT
1 TAAAGGTCATGTTCTTTAG-TGCATTTTT
24914500 TCACATAAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
85 60 0.61
86 37 0.38
87 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.36
Consensus pattern (85 bp):
TAAAGGTCATGTTCTTTAGTGCATTTTTGGGAAAAGCGCTACTAAAAGTTATGCTCTTTAGCGGC
GTTTTTGAGAAAAGCGCCGC
Found at i:24917096 original size:29 final size:29
Alignment explanation
Indices: 24917062--24917120 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
24917052 TATCGTACTA
24917062 GTATATTTTTTAAAAATTGATTGTTGTAT
1 GTATATTTTTTAAAAATTGATTGTTGTAT
24917091 GTATATTTTTTAAAAATTGATTGTTGTAT
1 GTATATTTTTTAAAAATTGATTGTTGTAT
24917120 G
1 G
24917121 ACTTTCTTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (29 bp):
GTATATTTTTTAAAAATTGATTGTTGTAT
Found at i:24918190 original size:26 final size:26
Alignment explanation
Indices: 24918161--24918222 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
24918151 CATGCTCAAA
*
24918161 TACAGTCATACACATTGTAGGGGTAT
1 TACAGTCATACACATTATAGGGGTAT
** *
24918187 TACAGTCATTTTACCTTATAGGGGTAT
1 TACAGTCA-TACACATTATAGGGGTAT
24918214 TACAGTCAT
1 TACAGTCAT
24918223 TTTACCTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (26 bp):
TACAGTCATACACATTATAGGGGTAT
Found at i:24918213 original size:27 final size:27
Alignment explanation
Indices: 24918178--24918406 Score: 291
Period size: 27 Copynumber: 8.5 Consensus size: 27
24918168 ATACACATTG
* * *
24918178 TAGGGGTATTACAGTCATTTTACCTTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
* * *
24918205 TAGGGGTATTACAGTCATTTTACCTTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
* * *
24918232 TAAGGGTATTTCGATCATTTTTCCCTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
* * *
24918259 TGGGGGTATTTCAGTAATTTTACCCTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
24918286 T-GAGGGTATTTCGGTCATTTTACCCTA
1 TAG-GGGTATTTCGGTCATTTTACCCTA
24918313 TAGGGGTATTTCGGTCATTTTACCCTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
* *
24918340 TAGGGGTGTTTTGGTCATTTTACCCTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
*
24918367 TGGGGGTATTTCGGTCATTTTACCCTA
1 TAGGGGTATTTCGGTCATTTTACCCTA
24918394 T-GAGGGTATTTCG
1 TAG-GGGTATTTCG
24918407 ATCACCATTT
Statistics
Matches: 180, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 177 0.98
28 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTCGGTCATTTTACCCTA
Found at i:24920214 original size:9 final size:9
Alignment explanation
Indices: 24920202--24920335 Score: 107
Period size: 9 Copynumber: 15.1 Consensus size: 9
24920192 ATATCTATGG
24920202 ACTTACATA
1 ACTTACATA
24920211 ACTTACATA
1 ACTTACATA
24920220 ACTTACATA
1 ACTTACATA
*
24920229 AATGT--ATA
1 ACT-TACATA
* *
24920237 TCATATCATA
1 ACTTA-CATA
*
24920247 ACTTACAAA
1 ACTTACATA
24920256 ACTTACATA
1 ACTTACATA
24920265 A--TACATA
1 ACTTACATA
* *
24920272 A-ATATATA
1 ACTTACATA
* *
24920280 TCATATCATA
1 ACTTA-CATA
* *
24920290 CCTTACGTA
1 ACTTACATA
24920299 ACTTACATA
1 ACTTACATA
24920308 ACTTACATA
1 ACTTACATA
*
24920317 ATTTACATA
1 ACTTACATA
24920326 ACTTACATA
1 ACTTACATA
24920335 A
1 A
24920336 TTTAAATCAA
Statistics
Matches: 100, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
7 8 0.08
8 8 0.08
9 71 0.71
10 13 0.13
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (9 bp):
ACTTACATA
Found at i:24920284 original size:43 final size:44
Alignment explanation
Indices: 24920181--24920317 Score: 186
Period size: 43 Copynumber: 3.0 Consensus size: 44
24920171 CATAATAGAG
*
24920181 AAATATATATCATATCTATGGACTTACATAACTTACATAACTTACAT
1 AAATATATATCATATC-AT-AACTTACATAACTTACATAAC-TACAT
* *
24920228 AAATGTATATCATATCATAACTTACAAAACTTACATAA-TACAT
1 AAATATATATCATATCATAACTTACATAACTTACATAACTACAT
* *
24920271 AAATATATATCATATCATACCTTACGTAACTTACATAACTTACAT
1 AAATATATATCATATCATAACTTACATAACTTACATAAC-TACAT
24920316 AA
1 AA
24920318 TTTACATAAC
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
43 39 0.48
45 25 0.31
46 2 0.02
47 15 0.19
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (44 bp):
AAATATATATCATATCATAACTTACATAACTTACATAACTACAT
Found at i:24920972 original size:19 final size:19
Alignment explanation
Indices: 24920920--24920964 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
24920910 TGGTACATAG
24920920 GACACGCTCGTGTCCCCTA
1 GACACGCTCGTGTCCCCTA
24920939 GACACGCTCGTGTCCCCTA
1 GACACGCTCGTGTCCCCTA
24920958 GACACGC
1 GACACGC
24920965 CTGTGTCCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.18, C:0.42, G:0.22, T:0.18
Consensus pattern (19 bp):
GACACGCTCGTGTCCCCTA
Found at i:24922344 original size:52 final size:51
Alignment explanation
Indices: 24922282--24922380 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 51
24922272 ACCTTATAAG
* *
24922282 ATGTACACATCCATAATGAACTCAGACTAACTCAACGAGCTCAGATGTCAC
1 ATGTACACATCCATAATGAACTCAGACCAACTCAACAAGCTCAGATGTCAC
* *
24922333 ATGTATCACATCCATTATGAACTCAGACCAACTCAACAAGCTCGGATG
1 ATGTA-CACATCCATAATGAACTCAGACCAACTCAACAAGCTCAGATG
24922381 CTTCACATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
51 5 0.12
52 38 0.88
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.22
Consensus pattern (51 bp):
ATGTACACATCCATAATGAACTCAGACCAACTCAACAAGCTCAGATGTCAC
Found at i:24924148 original size:285 final size:283
Alignment explanation
Indices: 24923641--24924199 Score: 1012
Period size: 285 Copynumber: 2.0 Consensus size: 283
24923631 TGTGGTCTCA
24923641 AAACCACTGTTCTAACTAGGCCCTAATTCGGGATGTTACACGGCTTGATTTAGTTGAAATGGTTC
1 AAACCACTGTTCTAACTAGGCCCTAATTCGGGATGTTACACGGCTTGATTTAGTTGAAATGGTTC
* * *
24923706 AGCGTGATCTTCATCCCCAAGTACTTCCGAATGGGAAATATCGGTTGTCGCCTTCTATTTTTGCA
66 AGCGTGATCTTCATCCCCAAGTACTTCCGAATGCGAAATATCGGTTATCGCCTTCTATTTTTACA
*
24923771 ATGTCAAAGGATGAGAAATAAGTGTTCTGCATGGTGTTGAAGGATATAAAAGTCCCAGATGAGTA
131 ATGTCAAAGGATGAGAAAGAAGTGTTCTGCATGGTGTTGAAGGATATAAAAGTCCCAGATGAGTA
*
24923836 TGCATTAAATATATCTCAATGTGTGATTCTTAAAGATAGAAGA-TATATTCCTTAAAATCACATG
196 TGCATTAAATATATCTCAATGTGTGATTCTTAAAGATAAAAGACTATATTCCTTAAAATCACATG
24923900 ATTATCACATCTTGTTTTAATTG
261 ATTATCACATCTTGTTTTAATTG
24923923 AAACCACTGTTCTAACTAGGCCCTAATTCGGGATGTTACACGGCTTGATTTAGTTGAAATGGGAA
1 AAACCACTGTTCTAACTAGGCCCTAATTCGGGATGTTACACGGCTTGATTTAGTTGAAAT-GG--
* *
24923988 TTCAGTGTGATCTTCATCCCCAAGTACTTCCGAATGCGAAATTTCGGTTATCGCCTTCTATTTTT
63 TTCAGCGTGATCTTCATCCCCAAGTACTTCCGAATGCGAAATATCGGTTATCGCCTTCTATTTTT
*
24924053 ACAATGTCAAAGGATGAGAAAGAAGTGTTCTGCATGGTGTTGAAGGATATAAAGGTCCCAGATGA
128 ACAATGTCAAAGGATGAGAAAGAAGTGTTCTGCATGGTGTTGAAGGATATAAAAGTCCCAGATGA
24924118 GTATGCATTAAATATATCTCAATGTGTGATTCTTAAAGATAAAAGACTATATTCCTTAAAATCAC
193 GTATGCATTAAATATATCTCAATGTGTGATTCTTAAAGATAAAAGACTATATTCCTTAAAATCAC
24924183 ATGATTATCACATCTTG
258 ATGATTATCACATCTTG
24924200 ATGTAATATT
Statistics
Matches: 265, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
282 60 0.23
283 2 0.01
285 168 0.63
286 35 0.13
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (283 bp):
AAACCACTGTTCTAACTAGGCCCTAATTCGGGATGTTACACGGCTTGATTTAGTTGAAATGGTTC
AGCGTGATCTTCATCCCCAAGTACTTCCGAATGCGAAATATCGGTTATCGCCTTCTATTTTTACA
ATGTCAAAGGATGAGAAAGAAGTGTTCTGCATGGTGTTGAAGGATATAAAAGTCCCAGATGAGTA
TGCATTAAATATATCTCAATGTGTGATTCTTAAAGATAAAAGACTATATTCCTTAAAATCACATG
ATTATCACATCTTGTTTTAATTG
Found at i:24927114 original size:13 final size:14
Alignment explanation
Indices: 24927098--24927126 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24927088 TTTTAAATAT
24927098 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
24927111 TTATAATGGTTTAA
1 TTATAATGGTTTAA
24927125 TT
1 TT
24927127 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:24927998 original size:43 final size:43
Alignment explanation
Indices: 24927922--24928235 Score: 208
Period size: 43 Copynumber: 7.4 Consensus size: 43
24927912 AGAACATGAC
* * * *
24927922 CTTTAGCAGCGTTT-T-TGTAAAAGCGCCGCTAAAGGTCATGTT
1 CTTTAGCGGCGTTTGTATG-AAAGGCACCGCTAAAGGTCACGTT
* * *
24927964 CTTTAGCGGCGTTTGTATGAAAAGCACTGCTAAAGGTCAAG-T
1 CTTTAGCGGCGTTTGTATGAAAGGCACCGCTAAAGGTCACGTT
* ** * * * *
24928006 -TATAGCGGAATTTTTAAGAAAGGCACCACTAAATGTCACGTT
1 CTTTAGCGGCGTTTGTATGAAAGGCACCGCTAAAGGTCACGTT
* *** * * *
24928048 CTTTAGCCGCGTTTGTATGAAAGGTGTCGTTAAAGTTCACATT
1 CTTTAGCGGCGTTTGTATGAAAGGCACCGCTAAAGGTCACGTT
* ** * * * *
24928091 CATTAATGGCGTTTGTGTGAAAGGCACCACTACAGGTTACGTT
1 CTTTAGCGGCGTTTGTATGAAAGGCACCGCTAAAGGTCACGTT
* * * *
24928134 CTTTAGCAGCATTTG-AGTGAAAGGCGCAGCTAAAGGTCACGTT
1 CTTTAGCGGCGTTTGTA-TGAAAGGCACCGCTAAAGGTCACGTT
** * ** * *
24928177 CTTTAGTAGCGTTTGTGTGAAAGGTGCTGC-AAAGGTCATGTT
1 CTTTAGCGGCGTTTGTATGAAAGGCACCGCTAAAGGTCACGTT
24928219 CTTTAGCGGCGCTTTGT
1 CTTTAGCGGCG-TTTGT
24928236 CAAAAATGCC
Statistics
Matches: 204, Mismatches: 61, Indels: 13
0.73 0.22 0.05
Matches are distributed among these distances:
41 30 0.15
42 35 0.17
43 137 0.67
44 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTATGAAAGGCACCGCTAAAGGTCACGTT
Found at i:24935781 original size:57 final size:57
Alignment explanation
Indices: 24935682--24935819 Score: 138
Period size: 57 Copynumber: 2.4 Consensus size: 57
24935672 GTCATGAAAT
* * * * * **
24935682 GGATTTAGCCTGGA-TGGATAATCCATAGTAGGTTCATTAGAGCTAATGTTATCGAAG
1 GGATTTAGCCTGGACTGG-TAATCCATAATAAGCTCATTAGAGCGAATGCTAAAGAAG
*
24935739 GGATTTAGCCTGGACTGGTAATCCGA-AATAAGCTC-TTAAGAGCGAATGCTAAAGACG
1 GGATTTAGCCTGGACTGGTAATCC-ATAATAAGCTCATT-AGAGCGAATGCTAAAGAAG
* *
24935796 GGATTTAGCCTAGACTGATAATCC
1 GGATTTAGCCTGGACTGGTAATCC
24935820 TGTTTTATAA
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
56 2 0.03
57 62 0.91
58 4 0.06
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (57 bp):
GGATTTAGCCTGGACTGGTAATCCATAATAAGCTCATTAGAGCGAATGCTAAAGAAG
Found at i:24939643 original size:42 final size:41
Alignment explanation
Indices: 24939584--24939696 Score: 118
Period size: 44 Copynumber: 2.7 Consensus size: 41
24939574 GATGCCACTA
* * * **
24939584 TCCCAAACAGGGTCTTACACGAAATCAAATACGATACTGATG
1 TCCCAGACATGGTCTTACACGAAATCAAAT-CAATACCAATG
*
24939626 TCCCAGACATGGTCTTACACGTAAATCTCAAATCAATGCCAATG
1 TCCCAGACATGGTCTTACACG-AAA--TCAAATCAATACCAATG
* *
24939670 TCCCAGACGTGGTCTTACACAAAATCA
1 TCCCAGACATGGTCTTACACGAAATCA
24939697 CATATCGAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 3 0.05
42 19 0.32
43 6 0.10
44 26 0.43
45 6 0.10
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAAATCAAATCAATACCAATG
Found at i:24940810 original size:13 final size:13
Alignment explanation
Indices: 24940792--24940816 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24940782 CAAACGATCA
24940792 AATTTTCACACAG
1 AATTTTCACACAG
24940805 AATTTTCACACA
1 AATTTTCACACA
24940817 TACTAATTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AATTTTCACACAG
Found at i:24941839 original size:6 final size:6
Alignment explanation
Indices: 24941816--24941925 Score: 80
Period size: 6 Copynumber: 17.8 Consensus size: 6
24941806 TATCAAAACT
* * *
24941816 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * * *
24941865 AGAATC AG-GTGAC AGAATT AGAATC AGAATC AGTATC AGGTAGC AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC A-GAATC AGAATC
*
24941915 AAAATC AGAAT
1 AGAATC AGAAT
24941926 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 16, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
5 2 0.02
6 66 0.81
7 11 0.14
8 2 0.02
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:24941859 original size:25 final size:25
Alignment explanation
Indices: 24941828--24941897 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
24941818 AATCAAAATG
24941828 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
24941853 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
24941878 AGAATTAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
24941898 TATCAGGTAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.46, C:0.14, G:0.23, T:0.17
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:24941866 original size:31 final size:30
Alignment explanation
Indices: 24941828--24941925 Score: 116
Period size: 31 Copynumber: 3.4 Consensus size: 30
24941818 AATCAAAATG
24941828 AGAATCAGAATCAGAATCAGGT---G-A-C
1 AGAATCAGAATCAGAATCAGGTACAGAATC
*
24941853 AGAATCAGAATCAGAATCAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGGT-ACAGAATC
*
24941884 AGAATCAGAATCAGTATCAGGTAGCAGAATC
1 AGAATCAGAATCAGAATCAGGTA-CAGAATC
*
24941915 AAAATCAGAAT
1 AGAATCAGAAT
24941926 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
25 22 0.35
29 1 0.02
30 2 0.03
31 37 0.60
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.18
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGGTACAGAATC
Found at i:24942092 original size:27 final size:26
Alignment explanation
Indices: 24942044--24942103 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
24942034 GCGAGGCTGC
*
24942044 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* *
24942071 CAGATATTGTGGCTAAGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
24942097 CAGATAT
1 CAGATAT
24942104 ATATATATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:24942116 original size:33 final size:32
Alignment explanation
Indices: 24942065--24942128 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
24942055 ACGAAGTCAC
* *
24942065 CAGATACAGATATTGTGGCTAAGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCAACAGAA
* *
24942097 CAGATATATATATATGTGGCGAAGCCAACAGA
1 CAGATACAGATAT-TGTGGCGAAGCCAACAGA
24942129 TTGCAACGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCAACAGAA
Found at i:24942395 original size:27 final size:27
Alignment explanation
Indices: 24942365--24942557 Score: 289
Period size: 27 Copynumber: 7.2 Consensus size: 27
24942355 AACACCCTAG
*
24942365 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
24942392 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
24942419 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * **
24942446 GGGTAAAACAATAATTTTGTAAATTAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
24942473 GGGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
24942500 GGGTAAAACAGTAATTTTGTAAGTCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
24942527 GGGTAAAACGGTAATTCTGTAAATC-A
1 GGGTAAAACAGTAATTCTGTAAATCGA
24942553 GGGTA
1 GGGTA
24942558 CTTTGGTAAT
Statistics
Matches: 150, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
26 6 0.04
27 144 0.96
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:24942582 original size:53 final size:54
Alignment explanation
Indices: 24942365--24942584 Score: 234
Period size: 54 Copynumber: 4.1 Consensus size: 54
24942355 AACACCCTAG
* *
24942365 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA-AA-TCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATT-T-TACAAGTAGA
* * *
24942419 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAATAATTTTGTA-AATTA-A
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAA-TTT-TACAAGTAGA
* ** *
24942473 GGGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACAGTAATTTTGTAAGTCGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTACAAGTAGA
* *****
24942527 GGGTAAAACGGTAATTCTGTAAATC-AGGGTACTTTGGTAATTTTACAAGTAGA
1 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTACAAGTAGA
24942580 GGGTA
1 GGGTA
24942585 TTTCAATAAT
Statistics
Matches: 142, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
52 1 0.01
53 31 0.22
54 107 0.75
55 3 0.02
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (54 bp):
GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTACAAGTAGA
Found at i:24942709 original size:27 final size:27
Alignment explanation
Indices: 24942607--24942811 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
24942597 TACAGGTCGA
* * * *
24942607 GGGTATTTTAGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
24942634 GGGTA-TTTGGTAACTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
24942660 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
24942687 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
24942714 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
24942741 GGGTACTTTAGTAATTGTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
24942768 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
24942795 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
24942812 GGTAAACTAA
Statistics
Matches: 152, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 20 0.13
27 132 0.87
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:24942768 original size:81 final size:81
Alignment explanation
Indices: 24942552--24942811 Score: 285
Period size: 81 Copynumber: 3.2 Consensus size: 81
24942542 TCTGTAAATC
* ** * * ***
24942552 AGGGTACTTTGGTAATTTTACAAGTAGAGGGTATTTCA-ATAATTTTACAGGTC-GAGGGTATTT
1 AGGGTATTTTGGTAATTTTACAAACAAAGGGTATTT-AGATAATTGTACAAACCAG-GGGTATTT
* * *
24942615 TAGTAATTTCACAAATCA
64 TGGTAATTTTACAAACCA
* * * * *
24942633 AGGGTA-TTTGGTAACTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTAGATAATTGTACAAACCAGGGGTATTTTG
24942697 GTAATTTTACAAACCA
66 GTAATTTTACAAACCA
* *
24942713 GGGGTATTTTGGTAATTTTATAAACAAAGGGTACTTTAG-TAATTGTACAAACCAGGGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAACAAAGGGTA-TTTAGATAATTGTACAAACCAGGGGTATTTT
**
24942777 GGTAATTTTGTAAACCA
65 GGTAATTTTACAAACCA
24942794 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
24942812 GGTAAACTAA
Statistics
Matches: 152, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
80 63 0.41
81 85 0.56
82 4 0.03
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.38
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAACAAAGGGTATTTAGATAATTGTACAAACCAGGGGTATTTTG
GTAATTTTACAAACCA
Found at i:24942818 original size:27 final size:27
Alignment explanation
Indices: 24942552--24942811 Score: 254
Period size: 27 Copynumber: 9.7 Consensus size: 27
24942542 TCTGTAAATC
* **
24942552 AGGGTACTTTGGTAATTTTAC-AAGTA
1 AGGGTATTTTGGTAATTTTACAAACCA
*** *** *
24942578 GAGGGTATTTCAATAATTTTACAGGTCG
1 -AGGGTATTTTGGTAATTTTACAAACCA
* * *
24942606 AGGGTATTTTAGTAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
24942633 AGGGTA-TTTGGTAACTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
24942659 GGGGTATTTTGATAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
24942686 GGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
24942713 GGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
24942740 AGGGTACTTTAGTAATTGTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
24942767 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
24942794 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
24942812 GGTAAACTAA
Statistics
Matches: 191, Mismatches: 40, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 20 0.10
27 171 0.90
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:24946053 original size:12 final size:12
Alignment explanation
Indices: 24946011--24946055 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
24946001 TAAAATAGTA
24946011 TATATTATT-TT
1 TATATTATTATT
24946022 TATA-TATTATT
1 TATATTATTATT
*
24946033 CAT-TATATTATT
1 TATAT-TATTATT
24946045 TATATTATTAT
1 TATATTATTAT
24946056 ACATTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
10 4 0.14
11 8 0.29
12 15 0.54
13 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (12 bp):
TATATTATTATT
Found at i:24958693 original size:44 final size:43
Alignment explanation
Indices: 24958611--24958693 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
24958601 GATCTAAGAT
** * *
24958611 GATTTGGCATCTCTGTATTGTCAGAGAGTAAATCGAAGAAACA
1 GATTTGGCATCTCCATATTGACAGAGAGCAAATCGAAGAAACA
* *
24958654 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGA
1 GATTTGGCATCTCCATATT-GACAGAGAGCAAATCGAAGA
24958694 CATAGCAGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 17 0.52
44 16 0.48
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (43 bp):
GATTTGGCATCTCCATATTGACAGAGAGCAAATCGAAGAAACA
Found at i:24958807 original size:220 final size:220
Alignment explanation
Indices: 24958342--24958879 Score: 812
Period size: 221 Copynumber: 2.4 Consensus size: 220
24958332 CAAGCTAAAG
* * * * * *
24958342 CATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGTAGATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGAAGATCTAAGATGATTTGGCATCTCTGTA
* * *
24958407 TTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCGTATTCGACGGAGAGCAGATCAAAG
66 TTGTCAGAGAGCAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAG
* *
24958472 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTT
*
24958537 GCGTTTACAAGGAGCAGATAGAAGA
196 GCGCTTACAAGGAGCAGATAGAAGA
* **
24958562 CATAGTAGATTTGGCTTTCACGTGTTTACAATGAAGCAAGATCTAAGATGATTTGGCATCTCTGT
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG-AAGATCTAAGATGATTTGGCATCTCTGT
* *
24958627 ATTGTCAGAGAGTAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
65 ATTGTCAGAGAGCAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAA
* *
24958692 GACATAGCAGATCTAACCTTCGGATGTTTT-GCATCAAAGCAGATCCAAGATGATTTGGCATCTT
130 GACATAGCAGATCTAACCTTCGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCT
*
24958756 TGCGCTTACAAGGAGCAGATCGAAGA
195 TGCGCTTACAAGGAGCAGATAGAAGA
* *
24958782 CGTAGCAGATTTGGCTTTCACGTG-TTACGCTGAA-ATAGATCTAAGATGATTTGGCATCTCTAT
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGA-AGATCTAAGATGATTTGGCATCTCTGT
* *
24958845 ATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGG
65 ATTGTCAGAGAGCAAATCGAAGA-AACAGATTTGG
24958880 TGTCTCTGAA
Statistics
Matches: 287, Mismatches: 28, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
217 1 0.00
218 47 0.16
219 18 0.06
220 105 0.37
221 116 0.40
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (220 bp):
CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGAAGATCTAAGATGATTTGGCATCTCTGTA
TTGTCAGAGAGCAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAG
ACATAGCAGATCTAACCTTCGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTT
GCGCTTACAAGGAGCAGATAGAAGA
Found at i:24958886 original size:44 final size:44
Alignment explanation
Indices: 24958829--24958924 Score: 149
Period size: 44 Copynumber: 2.2 Consensus size: 44
24958819 GATCTAAGAT
*
24958829 GATTTGGCATCTCT-ATATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGA-ATTGTCAGAGAGCAGATCGAAGATAACA
**
24958873 GATTTGGTGTCTCTGAATTGTCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGAATTGTCAGAGAGCAGATCGAAGATAACA
24958917 GATTTGGC
1 GATTTGGC
24958925 GTTCCTAAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
44 46 0.98
45 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (44 bp):
GATTTGGCATCTCTGAATTGTCAGAGAGCAGATCGAAGATAACA
Found at i:24959155 original size:16 final size:16
Alignment explanation
Indices: 24959134--24959166 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24959124 CGGGCCCATG
24959134 AATAAATAAAAAAATA
1 AATAAATAAAAAAATA
*
24959150 AATAAATAATAAAATA
1 AATAAATAAAAAAATA
24959166 A
1 A
24959167 CAGTTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AATAAATAAAAAAATA
Found at i:24960243 original size:17 final size:16
Alignment explanation
Indices: 24960223--24960277 Score: 67
Period size: 17 Copynumber: 3.4 Consensus size: 16
24960213 TATATTTCAT
24960223 TATATTTTATTTATATA
1 TATATTTTA-TTATATA
*
24960240 TATATTTTATTACATA
1 TATATTTTATTATATA
*
24960256 TCATATATTATTATATA
1 T-ATATTTTATTATATA
24960273 T-TATT
1 TATATT
24960278 CCCTATATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 3 0.09
16 7 0.21
17 23 0.70
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (16 bp):
TATATTTTATTATATA
Found at i:24965129 original size:27 final size:29
Alignment explanation
Indices: 24965070--24965129 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 29
24965060 TTTCATTTAT
* * * *
24965070 TTCACATTTTAGTCCCTCAATTTCTCAAT
1 TTCACAATTTAGTCCCTAAATTACTCAAA
24965099 TTCACAATTTAG-CCC-AAATTACTCAAA
1 TTCACAATTTAGTCCCTAAATTACTCAAA
24965126 TTCA
1 TTCA
24965130 TCAAAAATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 13 0.48
28 3 0.11
29 11 0.41
ACGTcount: A:0.32, C:0.27, G:0.03, T:0.38
Consensus pattern (29 bp):
TTCACAATTTAGTCCCTAAATTACTCAAA
Found at i:24969616 original size:70 final size:71
Alignment explanation
Indices: 24969424--24969664 Score: 277
Period size: 70 Copynumber: 3.3 Consensus size: 71
24969414 TTTGGGTACT
* ** * **
24969424 CTGAGGTATTTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTC
1 CTGAGGTATTTTTAATTTATGTTTC--AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC
*
24969489 AGGTCACG
64 AGGACACG
* * *
24969497 CTGAGATATTTTTAATTCCTGTTGTTTCAAAAATCAGCTCATATTGTGAGAGGTGAGTTGAGCCT
1 CTGAGGTATTTTTAATT--T-ATGTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT
*
24969562 CAAGACACG
63 CAGGACACG
* * * *
24969571 TTGAGGTAATTTCAATTTATGTTTC-AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGG
1 CTGAGGTATTTTTAATTTATGTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
*
24969635 GGCACG
66 GACACG
*
24969641 CTGAGGTATTTTTAGTTTATGTTT
1 CTGAGGTATTTTTAATTTATGTTT
24969665 AGAAAATTGA
Statistics
Matches: 141, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
70 61 0.43
71 6 0.04
72 1 0.01
73 15 0.11
74 51 0.36
75 1 0.01
76 6 0.04
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (71 bp):
CTGAGGTATTTTTAATTTATGTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
GACACG
Found at i:24969870 original size:88 final size:88
Alignment explanation
Indices: 24969721--24969888 Score: 250
Period size: 88 Copynumber: 1.9 Consensus size: 88
24969711 CTGTTTTTCA
* * * *
24969721 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTT
1 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTGGGCACACGTGCTGAGCTATTTTCAAATT
*
24969786 CTGTTTTTCAAATTCCGTTCGTC
66 CTGTTATTCAAATTCCGTTCGTC
*
24969809 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGGTCACACGT-C-GAGGTATTTTCAAA
1 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCT-GGG-CACACGTGCTGAGCTATTTTCAAA
24969872 TTCTGTTATTCAAATTC
64 TTCTGTTATTCAAATTC
24969889 TGTTTTTTAA
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
88 63 0.88
89 3 0.04
90 6 0.08
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (88 bp):
AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTGGGCACACGTGCTGAGCTATTTTCAAATT
CTGTTATTCAAATTCCGTTCGTC
Found at i:24969885 original size:14 final size:14
Alignment explanation
Indices: 24969866--24969892 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24969856 TCGAGGTATT
24969866 TTCAAATTCTGTTA
1 TTCAAATTCTGTTA
24969880 TTCAAATTCTGTT
1 TTCAAATTCTGTT
24969893 TTTTAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (14 bp):
TTCAAATTCTGTTA
Found at i:24972797 original size:35 final size:31
Alignment explanation
Indices: 24972732--24972821 Score: 90
Period size: 35 Copynumber: 2.7 Consensus size: 31
24972722 CTAGATTTTA
* *
24972732 TATTCTTATATGTATATTATTACATTTATTT
1 TATTCTTATATATATATTATTACATGTATTT
24972763 TATTCTTATCATATATATTATCAATACATGTATTT
1 TATTCTTAT-ATATATATTAT---TACATGTATTT
* *
24972798 TATTATATGTATATATATATATTA
1 TATTCT-TATATATATAT-TATTA
24972822 TGTACACATA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
31 9 0.18
32 10 0.20
33 2 0.04
35 23 0.47
36 5 0.10
ACGTcount: A:0.34, C:0.07, G:0.03, T:0.56
Consensus pattern (31 bp):
TATTCTTATATATATATTATTACATGTATTT
Found at i:24977750 original size:42 final size:42
Alignment explanation
Indices: 24977665--24977824 Score: 117
Period size: 42 Copynumber: 3.8 Consensus size: 42
24977655 CATGGGATCA
* * ** *
24977665 CATATCGACGTCAATAGCCCAGCTATGGTCTTACACAATGTCT
1 CATATCGATGTC-ATATCCCAAATATGGTCTTACACAAAGTCT
*
24977708 CATATCGATGTCATATCCCAAATATGGTCTTATACAAAGTCT
1 CATATCGATGTCATATCCCAAATATGGTCTTACACAAAGTCT
* * * * * * ** *
24977750 CATTTTCGAAGCCATGTCCTAGACGTGGTCTTACACGAAA-TCG
1 CA-TATCGATGTCATATCCCAAATATGGTCTTACAC-AAAGTCT
**
24977793 CATGCCGAT-TCCATATCCCAAATATGGTCTTA
1 CATATCGATGT-CATATCCCAAATATGGTCTTA
24977825 TACGGAATCT
Statistics
Matches: 89, Mismatches: 25, Indels: 7
0.74 0.21 0.06
Matches are distributed among these distances:
42 47 0.53
43 39 0.44
44 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (42 bp):
CATATCGATGTCATATCCCAAATATGGTCTTACACAAAGTCT
Found at i:24979484 original size:27 final size:27
Alignment explanation
Indices: 24979446--24979499 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
24979436 ACTCAGGTAA
24979446 ATGGTGTTACACTCACTAAGTTCTCCC
1 ATGGTGTTACACTCACTAAGTTCTCCC
24979473 ATGGTGTTACACTCACTAAGTTCTCCC
1 ATGGTGTTACACTCACTAAGTTCTCCC
24979500 GAACTTACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (27 bp):
ATGGTGTTACACTCACTAAGTTCTCCC
Found at i:24980022 original size:20 final size:20
Alignment explanation
Indices: 24979993--24980046 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
24979983 TCACAGGGTC
*
24979993 ACACGCCCGTGTGGTTTTGG
1 ACACGCCCGTGTGGTTTAGG
*
24980013 ACATGCCCGTGTGGTTTAGG
1 ACACGCCCGTGTGGTTTAGG
*
24980033 ACACGCCCATGTGG
1 ACACGCCCGTGTGG
24980047 GCAGGCCGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.15, C:0.26, G:0.33, T:0.26
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTAGG
Found at i:24988666 original size:62 final size:62
Alignment explanation
Indices: 24988595--24988718 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
24988585 TAAATGGTTA
24988595 ATTGGGTAAAAAGAACTAAATTGTAAAAAGTGTAAAAGTTGAATTCTATTAGTTAAAGGGGT
1 ATTGGGTAAAAAGAACTAAATTGTAAAAAGTGTAAAAGTTGAATTCTATTAGTTAAAGGGGT
24988657 ATTGGGTAAAAAGAACTAAATTGTAAAAAGTGTAAAAGTTGAATTCTATTAGTTAAAGGGGT
1 ATTGGGTAAAAAGAACTAAATTGTAAAAAGTGTAAAAGTTGAATTCTATTAGTTAAAGGGGT
24988719 CAAATAGCCA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.44, C:0.03, G:0.23, T:0.31
Consensus pattern (62 bp):
ATTGGGTAAAAAGAACTAAATTGTAAAAAGTGTAAAAGTTGAATTCTATTAGTTAAAGGGGT
Found at i:24990914 original size:54 final size:54
Alignment explanation
Indices: 24990847--24990950 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
24990837 TTAGTGTATT
** * * *
24990847 AAGTCAGTGAGTTACATGACCTAGCACACGGCCTGTGACACGGCTGTGTGTCGC
1 AAGTCAGAAAGTTACACGACCTAGCACACGGCCTGCGACACGGCCGTGTGTCGC
* ** *
24990901 AAGTCAGAAAGTTATACGGTCTAGCACACGGCTTGCGACACGGCCGTGTG
1 AAGTCAGAAAGTTACACGACCTAGCACACGGCCTGCGACACGGCCGTGTG
24990951 ACCCAACTCA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 41 1.00
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Consensus pattern (54 bp):
AAGTCAGAAAGTTACACGACCTAGCACACGGCCTGCGACACGGCCGTGTGTCGC
Found at i:24990968 original size:54 final size:54
Alignment explanation
Indices: 24990867--24990973 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 54
24990857 GTTACATGAC
* * * * * *
24990867 CTAGCACACGGCCTGTGACACGGCTGTGTGTCGCAAGTCAGAAAGTTATACGGT
1 CTAGCACACGGCCTGCGACACGGCCGTGTGACCCAACTCAGAAAGTTACACGGT
* **
24990921 CTAGCACACGGCTTGCGACACGGCCGTGTGACCCAACTCAGTGAGTTACACGG
1 CTAGCACACGGCCTGCGACACGGCCGTGTGACCCAACTCAGAAAGTTACACGG
24990974 GTGAAGACAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (54 bp):
CTAGCACACGGCCTGCGACACGGCCGTGTGACCCAACTCAGAAAGTTACACGGT
Found at i:24995854 original size:2 final size:2
Alignment explanation
Indices: 24995847--24995884 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
24995837 TTAATTTTTA
24995847 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24995885 TATCTTTCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24997872 original size:18 final size:18
Alignment explanation
Indices: 24997849--24997883 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
24997839 ACCAAGGAAT
24997849 AATAAAAACATA-TATAAC
1 AATAAAAA-ATAGTATAAC
24997867 AATAAAAAATAGTATAA
1 AATAAAAAATAGTATAA
24997884 AGCGAATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.69, C:0.06, G:0.03, T:0.23
Consensus pattern (18 bp):
AATAAAAAATAGTATAAC
Found at i:24998022 original size:2 final size:2
Alignment explanation
Indices: 24998004--24998051 Score: 78
Period size: 2 Copynumber: 23.5 Consensus size: 2
24997994 ATTTAAGAAA
*
24998004 AT AT GAT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24998047 AT AT A
1 AT AT A
24998052 AATTTTAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 41 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:25010297 original size:55 final size:55
Alignment explanation
Indices: 25010213--25010322 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
25010203 TTAAGGAGAA
25010213 GGATCTCTTTAAGGGAGGAAGCACTTGTTATGGAAGGAATGTTTTCTATTGATTC
1 GGATCTCTTTAAGGGAGGAAGCACTTGTTATGGAAGGAATGTTTTCTATTGATTC
* *
25010268 GGATCTCTTTAAGGGAGGAAGTATTTGTTATGGAAGGAATGTTTTCTATTGATTC
1 GGATCTCTTTAAGGGAGGAAGCACTTGTTATGGAAGGAATGTTTTCTATTGATTC
25010323 TGTTAATTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.38
Consensus pattern (55 bp):
GGATCTCTTTAAGGGAGGAAGCACTTGTTATGGAAGGAATGTTTTCTATTGATTC
Found at i:25015600 original size:38 final size:38
Alignment explanation
Indices: 25015545--25015639 Score: 88
Period size: 38 Copynumber: 2.4 Consensus size: 38
25015535 TAATTTTATC
*
25015545 ATATATTAAAAATTTAT-ATAAA-CTGATAAAATTCATAA
1 ATATATTAAAAATTTATAATAAATCT--TAAAATTAATAA
*
25015583 ATAT-TTATAAATATTATAATAAATCTTAAAATTAATAAAA
1 ATATATTAAAAAT-TTATAATAAATCTTAAAATTAAT--AA
*
25015623 ACATATTAAAATATTTA
1 ATATATTAAAA-ATTTA
25015640 AAACATTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
37 7 0.15
38 17 0.37
39 5 0.11
40 7 0.15
41 8 0.17
42 2 0.04
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (38 bp):
ATATATTAAAAATTTATAATAAATCTTAAAATTAATAA
Found at i:25016598 original size:32 final size:32
Alignment explanation
Indices: 25016556--25016622 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
25016546 ACAAATTATA
*
25016556 TTTTTTTATAATTTTTATAAGTTTATA-CAAT
1 TTTTTTTATAATTTTTATAAGTATATATCAAT
25016587 TTTTTTATATAATTTTTATAAGTATATATCAAT
1 TTTTTT-TATAATTTTTATAAGTATATATCAAT
25016620 TTT
1 TTT
25016623 AATAATTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
31 6 0.18
32 20 0.61
33 7 0.21
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (32 bp):
TTTTTTTATAATTTTTATAAGTATATATCAAT
Found at i:25016623 original size:30 final size:30
Alignment explanation
Indices: 25016555--25016631 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 30
25016545 AACAAATTAT
* *
25016555 ATTTTTTTATAATTTTTATAAGTTTATACA
1 ATTTTTATATAATTTTTATAAGTATATACA
25016585 ATTTTTTTATATAATTTTTATAAGTATATATCA
1 A--TTTTTATATAATTTTTATAAGTATATA-CA
25016618 A-TTTTA-ATAATTTT
1 ATTTTTATATAATTTT
25016632 ATGAGAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
29 8 0.19
30 6 0.14
32 25 0.60
33 3 0.07
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (30 bp):
ATTTTTATATAATTTTTATAAGTATATACA
Found at i:25016632 original size:9 final size:10
Alignment explanation
Indices: 25016441--25016633 Score: 56
Period size: 10 Copynumber: 19.6 Consensus size: 10
25016431 AAATGATTTT
25016441 TTTTATATATA
1 TTTTATATA-A
25016452 TTTT-TAT-A
1 TTTTATATAA
*
25016460 TTTT-TACAA
1 TTTTATATAA
*
25016469 -TTTATTAGAA
1 TTTTA-TATAA
*
25016479 TTTTTTAT-A
1 TTTTATATAA
25016488 TTGTT-TATAA
1 TT-TTATATAA
*
25016498 GTTTTATAAAA
1 -TTTTATATAA
*
25016509 TTTTAAAT-A
1 TTTTATATAA
25016518 TTTTGA-AT-A
1 TTTT-ATATAA
25016527 TGTTT-TAGTAA
1 T-TTTATA-TAA
*
25016538 TTTTATAAACA
1 TTTTATATA-A
**
25016549 AATTATAT--
1 TTTTATATAA
*
25016557 TTTTTTATAA
1 TTTTATATAA
25016567 TTTT-TATAA
1 TTTTATATAA
* *
25016576 GTTTATACAA
1 TTTTATATAA
25016586 TTTTTTTATATAA
1 ---TTTTATATAA
25016599 TTTT-TATAA
1 TTTTATATAA
* *
25016608 GTATATATCAA
1 TTTTATAT-AA
25016619 TTTTA-ATAA
1 TTTTATATAA
25016628 TTTTAT
1 TTTTAT
25016634 GAGAAAATAT
Statistics
Matches: 136, Mismatches: 22, Indels: 49
0.66 0.11 0.24
Matches are distributed among these distances:
8 15 0.11
9 39 0.29
10 46 0.34
11 28 0.21
13 8 0.06
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (10 bp):
TTTTATATAA
Found at i:25016643 original size:28 final size:28
Alignment explanation
Indices: 25016589--25016651 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
25016579 TATACAATTT
* *
25016589 TTTTATATAATTTTTATAAGTATATATCAA
1 TTTTA-ATAATTTTTATAAGAAAATAT-AA
*
25016619 TTTTAATAA-TTTTATGAGAAAATATAA
1 TTTTAATAATTTTTATAAGAAAATATAA
*
25016646 TATTAA
1 TTTTAA
25016652 ACCAGGATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 7 0.24
28 13 0.45
29 4 0.14
30 5 0.17
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (28 bp):
TTTTAATAATTTTTATAAGAAAATATAA
Found at i:25018112 original size:29 final size:27
Alignment explanation
Indices: 25018080--25018159 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 27
25018070 TTATTGTAAT
25018080 TTTTATGAATTTTATATTTTTTATAAAAG
1 TTTTATGAATTTTATATTTTTTAT--AAG
* *
25018109 TTTTATGATTTTTTTATAATTTTTATAAG
1 TTTTATGA--ATTTTATATTTTTTATAAG
*
25018138 TTTATATCAATTTTAATATTTT
1 TTT-TATGAATTTT-ATATTTT
25018160 AATAAACTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
28 4 0.10
29 20 0.48
30 4 0.10
31 14 0.33
ACGTcount: A:0.31, C:0.01, G:0.05, T:0.62
Consensus pattern (27 bp):
TTTTATGAATTTTATATTTTTTATAAG
Found at i:25018131 original size:8 final size:9
Alignment explanation
Indices: 25018064--25018164 Score: 53
Period size: 9 Copynumber: 10.6 Consensus size: 9
25018054 TATAAAAAAA
25018064 TATAATTTAT
1 TATAATTT-T
*
25018074 TGTAATTTT
1 TATAATTTT
25018083 TATGAA-TTT
1 TAT-AATTTT
*
25018092 TATATTTTT
1 TATAATTTT
*
25018101 TATAAAAGTTT
1 TAT--AATTTT
*
25018112 TATGATTTTTT
1 TAT-A-ATTTT
25018123 TATAATTTT
1 TATAATTTT
*
25018132 TATAAGTTTA
1 TATAA-TTTT
25018142 TATCAATTTT
1 TAT-AATTTT
*
25018152 AAT-ATTTT
1 TATAATTTT
*
25018160 AATAA
1 TATAA
25018165 ACTTAATGAT
Statistics
Matches: 71, Mismatches: 12, Indels: 17
0.71 0.12 0.17
Matches are distributed among these distances:
8 9 0.13
9 25 0.35
10 22 0.31
11 15 0.21
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (9 bp):
TATAATTTT
Found at i:25018132 original size:20 final size:18
Alignment explanation
Indices: 25018079--25018159 Score: 63
Period size: 20 Copynumber: 4.1 Consensus size: 18
25018069 TTTATTGTAA
25018079 TTTTTATGAATTTTATATT
1 TTTTTAT-AATTTTATATT
*
25018098 TTTTATAAAAGTTTTATGATT
1 TTTT-TATAA-TTTTAT-ATT
**
25018119 TTTTTATAATTTTTATAAG
1 TTTTTATAA-TTTTATATT
*
25018138 TTTATATCAATTTTAATATT
1 TTTTTAT-AATTTT-ATATT
25018158 TT
1 TT
25018160 AATAAACTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
19 17 0.35
20 25 0.51
21 7 0.14
ACGTcount: A:0.31, C:0.01, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTTTATAATTTTATATT
Found at i:25018151 original size:31 final size:30
Alignment explanation
Indices: 25018089--25018151 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 30
25018079 TTTTTATGAA
* *
25018089 TTTTATATTTTTTATAAAAGTTTTATGATTT
1 TTTTATAATTTTTAT-AAAGTTTTATAATTT
25018120 TTTTATAATTTTTAT-AAGTTTATATCAATTT
1 TTTTATAATTTTTATAAAGTTT-TAT-AATTT
25018151 T
1 T
25018152 AATATTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 6 0.21
30 3 0.11
31 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (30 bp):
TTTTATAATTTTTATAAAGTTTTATAATTT
Found at i:25018733 original size:18 final size:19
Alignment explanation
Indices: 25018699--25018734 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
25018689 TAATAAATTA
*
25018699 TTTAATATTACAATTTTAC
1 TTTAATAATACAATTTTAC
25018718 TTTAATAATA-AATTTTA
1 TTTAATAATACAATTTTA
25018735 ACAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTAATAATACAATTTTAC
Found at i:25018822 original size:14 final size:14
Alignment explanation
Indices: 25018803--25018829 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25018793 ATTGATATTT
25018803 TAATAATAAATATG
1 TAATAATAAATATG
25018817 TAATAATAAATAT
1 TAATAATAAATAT
25018830 TTTATAGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (14 bp):
TAATAATAAATATG
Found at i:25019001 original size:17 final size:17
Alignment explanation
Indices: 25018970--25019009 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
25018960 TATTATTGAT
*
25018970 TATTAAATTTATATATAA
1 TATT-AATTTATATAAAA
*
25018988 TATTAATTTTTATAAAA
1 TATTAATTTATATAAAA
25019005 TATTA
1 TATTA
25019010 TCACATTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATTAATTTATATAAAA
Found at i:25019405 original size:29 final size:29
Alignment explanation
Indices: 25019349--25019407 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
25019339 ATTAATTGTT
*
25019349 TTTTTAATTTAAACAATTTATAAAAAATA
1 TTTTTAAATTAAACAATTTATAAAAAATA
25019378 TTTTTAAATTAAA-AA-TTATTAAATAAATA
1 TTTTTAAATTAAACAATTTA-TAAA-AAATA
25019407 T
1 T
25019408 AAATATTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 3 0.11
28 6 0.22
29 18 0.67
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (29 bp):
TTTTTAAATTAAACAATTTATAAAAAATA
Found at i:25022193 original size:199 final size:197
Alignment explanation
Indices: 25021828--25022341 Score: 699
Period size: 199 Copynumber: 2.6 Consensus size: 197
25021818 AAAAGAAAAG
** ** *
25021828 AAACTATTTTAACTTCCAAGTATTTCAAGTTTC-AAACCGAGGAATGATGTTCCATATACCAATA
1 AAACTATTTTAACTTCCAAGTATTT-AAAATTCAAAACCGAGGAATGATGTTCCATATGTCAAAA
* *
25021892 TGGAGGTGCTACTATAAATTTCAGTTGAAGCTAGCAAACTATTTTAACTTCAAGTATTTCAAGTT
65 TGGAGCTGCTACTGTAAATTTCAGTTGAAGCTAGCAAACTATTTTAACTTCAAGTATTTCAAGTT
* *
25021957 CAAAACCGAGGACTGATACTCCATATGTCAATATGGAGCTGCTACTGTAAATTTCTGTTGAAGCT
130 CAAAACCGAGGACTGATACTCCATATGTCAATATGGAGCAGCTACTGTAAATTTCAGTTGAAGCT
25022022 AGT
195 AGT
*
25022025 AAACTATTTTAACTTCCAAGTATTTAAAAATTCAAAACCGAGGTATGATGTTCCATATGTCAAAA
1 AAACTATTTTAACTTCCAAGTATTT-AAAATTCAAAACCGAGGAATGATGTTCCATATGTCAAAA
* * * *
25022090 TAGAGCTGCTACTGTAAATTTCAGTAGAAGCTAGTAAACTATTTTTAACTTTAAGTATTTCAAGT
65 TGGAGCTGCTACTGTAAATTTCAGTTGAAGCTAGCAAACTA-TTTTAACTTCAAGTATTTCAAGT
** *
25022155 TCAAAACCGAGGACTGATGTTCCATATGTCAATATGGAGCAGCTACTGTAAATTTCAGTTGCAGC
129 TCAAAACCGAGGACTGATACTCCATATGTCAATATGGAGCAGCTACTGTAAATTTCAGTTGAAGC
*
25022220 TCGT
194 TAGT
* * * * * *
25022224 AAACAATTTTAACTTCTCAAGTATTTCAAGTTCAAAACCGAGAAATAATGCTCCATATGT-AAAT
1 AAACTATTTTAACTTC-CAAGTATTTAAAATTCAAAACCGAGGAATGATGTTCCATATGTCAAA-
* * * * * *
25022288 ATGGAGCAGATACTGTAAATTTCAGTTGAAGCTAACAAAGTATTTCAAGTTCAA
64 ATGGAGCTGCTACTGTAAATTTCAGTTGAAGCTAGCAAACTATTTTAACTTCAA
25022342 AACTGAGGAC
Statistics
Matches: 277, Mismatches: 36, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
197 30 0.11
198 75 0.27
199 163 0.59
200 9 0.03
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (197 bp):
AAACTATTTTAACTTCCAAGTATTTAAAATTCAAAACCGAGGAATGATGTTCCATATGTCAAAAT
GGAGCTGCTACTGTAAATTTCAGTTGAAGCTAGCAAACTATTTTAACTTCAAGTATTTCAAGTTC
AAAACCGAGGACTGATACTCCATATGTCAATATGGAGCAGCTACTGTAAATTTCAGTTGAAGCTA
GT
Done.